Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1092500 | KEH22261.1 | 88.412 | 233 | 19 | 1 | 1 | 225 | 1 | 233 | 6.57e-152 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1092500 | sp|Q9S7L2|MYB98_ARATH | 40.000 | 115 | 57 | 3 | 62 | 164 | 211 | 325 | 1.30e-19 | 89.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1092500 | A0A072TYJ9 | 88.412 | 233 | 19 | 1 | 1 | 225 | 1 | 233 | 3.14e-152 | 431 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1092500 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1092500 | MtrunA17_Chr7g0228531 | 42.678 | 239 | 80 | 7 | 42 | 224 | 194 | 431 | 1.73e-49 | 167 |
| Msa1092500 | MtrunA17_Chr7g0228481 | 43.220 | 236 | 77 | 7 | 42 | 221 | 194 | 428 | 8.22e-46 | 157 |
| Msa1092500 | MtrunA17_Chr7g0233151 | 38.788 | 165 | 49 | 4 | 112 | 224 | 7 | 171 | 2.33e-27 | 102 |
| Msa1092500 | MtrunA17_Chr1g0177901 | 34.392 | 189 | 62 | 5 | 83 | 209 | 20 | 208 | 6.41e-23 | 92.4 |
| Msa1092500 | MtrunA17_Chr7g0228401 | 28.467 | 274 | 95 | 7 | 36 | 208 | 223 | 496 | 2.58e-21 | 91.7 |
| Msa1092500 | MtrunA17_Chr7g0233061 | 37.113 | 194 | 82 | 5 | 37 | 190 | 148 | 341 | 3.07e-21 | 90.5 |
| Msa1092500 | MtrunA17_Chr3g0117511 | 44.860 | 107 | 47 | 3 | 70 | 164 | 185 | 291 | 1.06e-20 | 89.7 |
| Msa1092500 | MtrunA17_Chr4g0058991 | 38.261 | 115 | 59 | 3 | 62 | 164 | 203 | 317 | 8.04e-19 | 84.3 |
| Msa1092500 | MtrunA17_Chr5g0429661 | 32.026 | 153 | 87 | 4 | 28 | 163 | 77 | 229 | 1.69e-18 | 82.8 |
| Msa1092500 | MtrunA17_Chr6g0460661 | 38.614 | 101 | 52 | 3 | 91 | 185 | 50 | 146 | 9.10e-15 | 69.3 |
| Msa1092500 | MtrunA17_Chr7g0238631 | 41.935 | 93 | 42 | 3 | 71 | 151 | 116 | 208 | 6.51e-14 | 70.1 |
| Msa1092500 | MtrunA17_Chr5g0397841 | 39.785 | 93 | 44 | 3 | 70 | 150 | 112 | 204 | 7.59e-14 | 70.1 |
| Msa1092500 | MtrunA17_Chr4g0008551 | 37.391 | 115 | 52 | 5 | 71 | 165 | 41 | 155 | 1.15e-13 | 68.9 |
| Msa1092500 | MtrunA17_Chr1g0157731 | 32.174 | 115 | 65 | 4 | 71 | 172 | 94 | 208 | 2.48e-13 | 68.6 |
| Msa1092500 | MtrunA17_Chr4g0046171 | 30.657 | 137 | 43 | 3 | 137 | 221 | 1 | 137 | 5.29e-13 | 64.3 |
| Msa1092500 | MtrunA17_Chr3g0139671 | 33.913 | 115 | 63 | 4 | 71 | 172 | 88 | 202 | 5.65e-13 | 67.8 |
| Msa1092500 | MtrunA17_Chr7g0233161 | 44.944 | 89 | 37 | 3 | 31 | 107 | 262 | 350 | 7.76e-12 | 63.9 |
| Msa1092500 | MtrunA17_Chr5g0417621 | 32.353 | 136 | 71 | 5 | 71 | 185 | 137 | 272 | 1.83e-11 | 62.8 |
| Msa1092500 | MtrunA17_Chr4g0042501 | 34.483 | 116 | 63 | 4 | 50 | 152 | 86 | 201 | 2.54e-11 | 62.4 |
| Msa1092500 | MtrunA17_Chr4g0070641 | 31.313 | 99 | 55 | 3 | 66 | 151 | 12 | 110 | 8.61e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1092500 | AT4G18770.1 | 40.000 | 115 | 57 | 3 | 62 | 164 | 211 | 325 | 1.33e-20 | 89.7 |
| Msa1092500 | AT3G27785.1 | 40.541 | 111 | 54 | 2 | 62 | 160 | 183 | 293 | 1.42e-19 | 86.7 |
| Msa1092500 | AT5G40360.1 | 40.678 | 118 | 56 | 3 | 60 | 164 | 150 | 266 | 1.47e-18 | 83.6 |
| Msa1092500 | AT2G25230.1 | 40.157 | 127 | 63 | 4 | 62 | 175 | 20 | 146 | 1.12e-17 | 79.3 |
| Msa1092500 | AT5G11050.1 | 39.640 | 111 | 55 | 3 | 63 | 161 | 100 | 210 | 1.38e-17 | 81.3 |
| Msa1092500 | AT5G58850.1 | 38.532 | 109 | 55 | 3 | 65 | 161 | 102 | 210 | 1.57e-17 | 80.9 |
| Msa1092500 | AT5G40430.1 | 36.691 | 139 | 76 | 3 | 62 | 188 | 48 | 186 | 1.23e-16 | 76.6 |
| Msa1092500 | AT5G11510.2 | 37.778 | 90 | 44 | 2 | 71 | 148 | 84 | 173 | 6.29e-13 | 67.8 |
| Msa1092500 | AT5G11510.3 | 37.778 | 90 | 44 | 2 | 71 | 148 | 84 | 173 | 6.35e-13 | 67.8 |
| Msa1092500 | AT5G11510.1 | 37.778 | 90 | 44 | 2 | 71 | 148 | 84 | 173 | 6.35e-13 | 67.8 |
| Msa1092500 | AT5G11510.4 | 37.778 | 90 | 44 | 2 | 71 | 148 | 84 | 173 | 6.35e-13 | 67.8 |
| Msa1092500 | AT5G11510.5 | 37.778 | 90 | 44 | 2 | 71 | 148 | 84 | 173 | 6.42e-13 | 67.8 |
| Msa1092500 | AT3G53200.2 | 41.667 | 72 | 40 | 2 | 78 | 148 | 1 | 71 | 1.00e-12 | 65.1 |
| Msa1092500 | AT5G02320.1 | 36.559 | 93 | 47 | 3 | 71 | 151 | 130 | 222 | 1.62e-12 | 66.6 |
| Msa1092500 | AT5G02320.2 | 36.559 | 93 | 47 | 3 | 71 | 151 | 130 | 222 | 1.62e-12 | 66.6 |
| Msa1092500 | AT5G02320.3 | 36.559 | 93 | 47 | 3 | 71 | 151 | 70 | 162 | 1.75e-12 | 66.2 |
| Msa1092500 | AT3G09370.1 | 38.710 | 93 | 45 | 3 | 71 | 151 | 133 | 225 | 3.40e-12 | 65.5 |
| Msa1092500 | AT3G09370.2 | 38.710 | 93 | 45 | 3 | 71 | 151 | 138 | 230 | 3.54e-12 | 65.5 |
| Msa1092500 | AT3G09370.3 | 38.710 | 93 | 45 | 3 | 71 | 151 | 146 | 238 | 3.88e-12 | 65.5 |
| Msa1092500 | AT1G69560.2 | 25.269 | 186 | 114 | 6 | 4 | 169 | 61 | 241 | 6.11e-12 | 64.3 |
| Msa1092500 | AT3G28470.1 | 32.673 | 101 | 55 | 3 | 64 | 151 | 10 | 110 | 6.84e-12 | 64.3 |
| Msa1092500 | AT1G69560.1 | 25.269 | 186 | 114 | 6 | 4 | 169 | 45 | 225 | 6.87e-12 | 64.3 |
| Msa1092500 | AT4G33450.1 | 36.458 | 96 | 55 | 3 | 93 | 186 | 55 | 146 | 1.03e-11 | 63.2 |
| Msa1092500 | AT2G47190.1 | 31.193 | 109 | 62 | 3 | 53 | 148 | 7 | 115 | 1.34e-11 | 62.8 |
| Msa1092500 | AT3G53200.1 | 45.614 | 57 | 30 | 1 | 93 | 148 | 48 | 104 | 1.89e-11 | 62.0 |
| Msa1092500 | AT1G57560.2 | 30.769 | 130 | 83 | 4 | 93 | 218 | 51 | 177 | 2.18e-11 | 62.4 |
| Msa1092500 | AT1G57560.1 | 40.580 | 69 | 40 | 1 | 93 | 160 | 51 | 119 | 2.71e-11 | 62.4 |
| Msa1092500 | AT4G32730.1 | 34.409 | 93 | 49 | 3 | 71 | 151 | 90 | 182 | 3.33e-11 | 62.8 |
| Msa1092500 | AT4G32730.5 | 34.409 | 93 | 49 | 3 | 71 | 151 | 90 | 182 | 3.57e-11 | 62.8 |
| Msa1092500 | AT4G32730.4 | 34.409 | 93 | 49 | 3 | 71 | 151 | 90 | 182 | 3.57e-11 | 62.8 |
| Msa1092500 | AT4G32730.3 | 34.409 | 93 | 49 | 3 | 71 | 151 | 90 | 182 | 3.57e-11 | 62.8 |
| Msa1092500 | AT4G32730.2 | 34.409 | 93 | 49 | 3 | 71 | 151 | 90 | 182 | 3.57e-11 | 62.8 |
| Msa1092500 | AT4G00540.2 | 36.735 | 98 | 50 | 3 | 93 | 189 | 142 | 228 | 7.51e-11 | 61.6 |
| Msa1092500 | AT4G00540.1 | 36.735 | 98 | 50 | 3 | 93 | 189 | 140 | 226 | 8.15e-11 | 61.2 |
Find 43 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTATGTGGAAACGTTTA+AGG | 0.181442 | 7_3:+9356820 | Msa1092500:CDS |
| AACAATGATTATGAGTTATA+TGG | 0.223163 | 7_3:+9356745 | Msa1092500:CDS |
| GGCATTCTCGACTTGCTTAA+TGG | 0.229142 | 7_3:-9356614 | None:intergenic |
| GATCAAGCCCACAACATATT+TGG | 0.264284 | 7_3:+9356520 | Msa1092500:CDS |
| AAAAGAAACACCTTAATATC+TGG | 0.291683 | 7_3:-9356042 | None:intergenic |
| CCATTGATCAGCATTTATAT+TGG | 0.314785 | 7_3:-9355781 | None:intergenic |
| AAATGATTGTACTCAATATA+AGG | 0.322591 | 7_3:+9355608 | Msa1092500:CDS |
| CCATCTTAAACCAGATATTA+AGG | 0.331529 | 7_3:+9356032 | Msa1092500:CDS |
| GAATAGTATTCTGCTGCTTA+TGG | 0.333313 | 7_3:-9355728 | None:intergenic |
| GAAATTGATTTCCTGCTTCA+TGG | 0.333503 | 7_3:-9356791 | None:intergenic |
| ACCTTAAACGTTTCCACATA+AGG | 0.341962 | 7_3:-9356821 | None:intergenic |
| TAATCATTGTTGAATGTCAT+TGG | 0.377851 | 7_3:-9356733 | None:intergenic |
| TAAGCAGCAGAATACTATTC+AGG | 0.381837 | 7_3:+9355731 | Msa1092500:CDS |
| TATCCACCAAGTTCATCTTC+TGG | 0.384852 | 7_3:-9356706 | None:intergenic |
| TCAATATAAGGAACATCATA+TGG | 0.403054 | 7_3:+9355620 | Msa1092500:CDS |
| TTCCTGCTTCATGGGAACCT+CGG | 0.444432 | 7_3:-9356782 | None:intergenic |
| TCCTGCTTCATGGGAACCTC+GGG | 0.444652 | 7_3:-9356781 | None:intergenic |
| ACAACATATTTGGAGACAAC+TGG | 0.446422 | 7_3:+9356530 | Msa1092500:CDS |
| GTTGTCTCCAAATATGTTGT+GGG | 0.463375 | 7_3:-9356527 | None:intergenic |
| TGCTTATGGTAAATGAGAAC+GGG | 0.465009 | 7_3:-9355714 | None:intergenic |
| AATTTCATGAAGGCCTTATG+TGG | 0.471697 | 7_3:+9356808 | Msa1092500:CDS |
| AAATTGATTTCCTGCTTCAT+GGG | 0.472609 | 7_3:-9356790 | None:intergenic |
| ATATTTGTATCCAATTTCAC+TGG | 0.483235 | 7_3:-9355673 | None:intergenic |
| CCTTAATATCTGGTTTAAGA+TGG | 0.484241 | 7_3:-9356032 | None:intergenic |
| AATGGACTACAAAAGAGAAT+AGG | 0.491834 | 7_3:+9355799 | Msa1092500:CDS |
| TCCCGAGGTTCCCATGAAGC+AGG | 0.502564 | 7_3:+9356780 | Msa1092500:CDS |
| AGTTGTCTCCAAATATGTTG+TGG | 0.504440 | 7_3:-9356528 | None:intergenic |
| GAAATTTCAAGAAGATTGCC+AGG | 0.513813 | 7_3:+9356556 | Msa1092500:CDS |
| CCAATATAAATGCTGATCAA+TGG | 0.515462 | 7_3:+9355781 | Msa1092500:CDS |
| TGAGAACGGGTTCTTGATCA+TGG | 0.521600 | 7_3:-9355701 | None:intergenic |
| CTGCTTATGGTAAATGAGAA+CGG | 0.536086 | 7_3:-9355715 | None:intergenic |
| TGGATCTCTTTCTAAATCGA+TGG | 0.536456 | 7_3:+9355980 | Msa1092500:CDS |
| ACTACTCCAGAAGATGAACT+TGG | 0.550371 | 7_3:+9356700 | Msa1092500:CDS |
| TAAAACAATGCATGGAGAGA+TGG | 0.560064 | 7_3:+9356007 | Msa1092500:CDS |
| ATGGACCTTAAAACAATGCA+TGG | 0.570560 | 7_3:+9355999 | Msa1092500:CDS |
| TAAGGAACATCATATGGATG+AGG | 0.593905 | 7_3:+9355626 | Msa1092500:CDS |
| GCAGGAAATCAATTTCATGA+AGG | 0.597528 | 7_3:+9356798 | Msa1092500:CDS |
| ACTCCAGAAGATGAACTTGG+TGG | 0.599781 | 7_3:+9356703 | Msa1092500:CDS |
| GAATGAGCCATTGAGTGAGG+AGG | 0.611909 | 7_3:+9356483 | Msa1092500:intron |
| ACATAACTATCGTTACGTCC+TGG | 0.612302 | 7_3:-9356574 | None:intergenic |
| TGGTTGCAAAACTAGAGTGA+TGG | 0.623138 | 7_3:-9355653 | None:intergenic |
| TCGATTTAGAAAGAGATCCA+CGG | 0.651610 | 7_3:-9355977 | None:intergenic |
| GTAGAATGAGCCATTGAGTG+AGG | 0.657428 | 7_3:+9356480 | Msa1092500:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCATATATAGTTTTATTA+TGG | + | chr7_3:9355864-9355883 | Msa1092500:intron | 10.0% |
| !!! | TTTCATATATAGTTTTATTA+TGG | + | chr7_3:9355864-9355883 | Msa1092500:intron | 10.0% |
| !!! | TTCTAAAAAAAGTGTTAAAA+AGG | - | chr7_3:9356073-9356092 | None:intergenic | 15.0% |
| !! | GTCTATATATAATTAAATAG+AGG | - | chr7_3:9356434-9356453 | None:intergenic | 15.0% |
| !!! | TTCTAAAAAAAGTGTTAAAA+AGG | - | chr7_3:9356073-9356092 | None:intergenic | 15.0% |
| !! | GTCTATATATAATTAAATAG+AGG | - | chr7_3:9356434-9356453 | None:intergenic | 15.0% |
| !! | AAATGATTGTACTCAATATA+AGG | + | chr7_3:9355608-9355627 | Msa1092500:CDS | 20.0% |
| !! | TTACGCAATAAAAGATAAAA+AGG | - | chr7_3:9356100-9356119 | None:intergenic | 20.0% |
| !!! | TATGATTTTATAACAACAAG+TGG | + | chr7_3:9356228-9356247 | Msa1092500:intron | 20.0% |
| !! | ATGAAAACAAATTTGTGAAA+TGG | + | chr7_3:9356401-9356420 | Msa1092500:intron | 20.0% |
| !! | ATACAAAACATGTTTAGATT+AGG | - | chr7_3:9356456-9356475 | None:intergenic | 20.0% |
| !! | AAACCTTCAAAAATGTAATT+AGG | - | chr7_3:9356679-9356698 | None:intergenic | 20.0% |
| !! | AACAATGATTATGAGTTATA+TGG | + | chr7_3:9356745-9356764 | Msa1092500:CDS | 20.0% |
| !! | AAATGATTGTACTCAATATA+AGG | + | chr7_3:9355608-9355627 | Msa1092500:CDS | 20.0% |
| !! | TTACGCAATAAAAGATAAAA+AGG | - | chr7_3:9356100-9356119 | None:intergenic | 20.0% |
| !!! | TATGATTTTATAACAACAAG+TGG | + | chr7_3:9356228-9356247 | Msa1092500:intron | 20.0% |
| !! | ATGAAAACAAATTTGTGAAA+TGG | + | chr7_3:9356401-9356420 | Msa1092500:intron | 20.0% |
| !! | ATACAAAACATGTTTAGATT+AGG | - | chr7_3:9356456-9356475 | None:intergenic | 20.0% |
| !! | AAACCTTCAAAAATGTAATT+AGG | - | chr7_3:9356679-9356698 | None:intergenic | 20.0% |
| !! | AACAATGATTATGAGTTATA+TGG | + | chr7_3:9356745-9356764 | Msa1092500:CDS | 20.0% |
| ! | TCAATATAAGGAACATCATA+TGG | + | chr7_3:9355620-9355639 | Msa1092500:CDS | 25.0% |
| ! | ATATTTGTATCCAATTTCAC+TGG | - | chr7_3:9355676-9355695 | None:intergenic | 25.0% |
| ! | AAAAGAAACACCTTAATATC+TGG | - | chr7_3:9356045-9356064 | None:intergenic | 25.0% |
| ! | TGTAAAAGCAATATATGTGT+AGG | - | chr7_3:9356124-9356143 | None:intergenic | 25.0% |
| ! | CATTTCATTGAAAAACCTAA+TGG | + | chr7_3:9356335-9356354 | Msa1092500:intron | 25.0% |
| ! | CTTCAAAAATGTAATTAGGT+TGG | - | chr7_3:9356675-9356694 | None:intergenic | 25.0% |
| !! | CAACCTAATTACATTTTTGA+AGG | + | chr7_3:9356673-9356692 | Msa1092500:CDS | 25.0% |
| ! | TAATCATTGTTGAATGTCAT+TGG | - | chr7_3:9356736-9356755 | None:intergenic | 25.0% |
| ! | TCAATATAAGGAACATCATA+TGG | + | chr7_3:9355620-9355639 | Msa1092500:CDS | 25.0% |
| ! | ATATTTGTATCCAATTTCAC+TGG | - | chr7_3:9355676-9355695 | None:intergenic | 25.0% |
| ! | AAAAGAAACACCTTAATATC+TGG | - | chr7_3:9356045-9356064 | None:intergenic | 25.0% |
| ! | TGTAAAAGCAATATATGTGT+AGG | - | chr7_3:9356124-9356143 | None:intergenic | 25.0% |
| ! | CATTTCATTGAAAAACCTAA+TGG | + | chr7_3:9356335-9356354 | Msa1092500:intron | 25.0% |
| ! | CTTCAAAAATGTAATTAGGT+TGG | - | chr7_3:9356675-9356694 | None:intergenic | 25.0% |
| !! | CAACCTAATTACATTTTTGA+AGG | + | chr7_3:9356673-9356692 | Msa1092500:CDS | 25.0% |
| ! | TAATCATTGTTGAATGTCAT+TGG | - | chr7_3:9356736-9356755 | None:intergenic | 25.0% |
| !!! | GTACAATCATTTTGAGACAA+GGG | - | chr7_3:9355600-9355619 | None:intergenic | 30.0% |
| !!! | AGTACAATCATTTTGAGACA+AGG | - | chr7_3:9355601-9355620 | None:intergenic | 30.0% |
| CCATTGATCAGCATTTATAT+TGG | - | chr7_3:9355784-9355803 | None:intergenic | 30.0% | |
| CCAATATAAATGCTGATCAA+TGG | + | chr7_3:9355781-9355800 | Msa1092500:CDS | 30.0% | |
| !! | AATGGACTACAAAAGAGAAT+AGG | + | chr7_3:9355799-9355818 | Msa1092500:CDS | 30.0% |
| ! | CCTTAATATCTGGTTTAAGA+TGG | - | chr7_3:9356035-9356054 | None:intergenic | 30.0% |
| CCATCTTAAACCAGATATTA+AGG | + | chr7_3:9356032-9356051 | Msa1092500:CDS | 30.0% | |
| ! | ATTGAAAAACCTAATGGATG+TGG | + | chr7_3:9356341-9356360 | Msa1092500:intron | 30.0% |
| ! | AAATTGATTTCCTGCTTCAT+GGG | - | chr7_3:9356793-9356812 | None:intergenic | 30.0% |
| !!! | GTACAATCATTTTGAGACAA+GGG | - | chr7_3:9355600-9355619 | None:intergenic | 30.0% |
| !!! | AGTACAATCATTTTGAGACA+AGG | - | chr7_3:9355601-9355620 | None:intergenic | 30.0% |
| CCATTGATCAGCATTTATAT+TGG | - | chr7_3:9355784-9355803 | None:intergenic | 30.0% | |
| CCAATATAAATGCTGATCAA+TGG | + | chr7_3:9355781-9355800 | Msa1092500:CDS | 30.0% | |
| !! | AATGGACTACAAAAGAGAAT+AGG | + | chr7_3:9355799-9355818 | Msa1092500:CDS | 30.0% |
| ! | CCTTAATATCTGGTTTAAGA+TGG | - | chr7_3:9356035-9356054 | None:intergenic | 30.0% |
| CCATCTTAAACCAGATATTA+AGG | + | chr7_3:9356032-9356051 | Msa1092500:CDS | 30.0% | |
| ! | ATTGAAAAACCTAATGGATG+TGG | + | chr7_3:9356341-9356360 | Msa1092500:intron | 30.0% |
| ! | AAATTGATTTCCTGCTTCAT+GGG | - | chr7_3:9356793-9356812 | None:intergenic | 30.0% |
| TAAGGAACATCATATGGATG+AGG | + | chr7_3:9355626-9355645 | Msa1092500:CDS | 35.0% | |
| ! | AGTTTTGCAACCAGTGAAAT+TGG | + | chr7_3:9355663-9355682 | Msa1092500:CDS | 35.0% |
| TGCTTATGGTAAATGAGAAC+GGG | - | chr7_3:9355717-9355736 | None:intergenic | 35.0% | |
| CTGCTTATGGTAAATGAGAA+CGG | - | chr7_3:9355718-9355737 | None:intergenic | 35.0% | |
| ! | GAATAGTATTCTGCTGCTTA+TGG | - | chr7_3:9355731-9355750 | None:intergenic | 35.0% |
| TAAGCAGCAGAATACTATTC+AGG | + | chr7_3:9355731-9355750 | Msa1092500:CDS | 35.0% | |
| TCGATTTAGAAAGAGATCCA+CGG | - | chr7_3:9355980-9355999 | None:intergenic | 35.0% | |
| TGGATCTCTTTCTAAATCGA+TGG | + | chr7_3:9355980-9355999 | Msa1092500:CDS | 35.0% | |
| ATGGACCTTAAAACAATGCA+TGG | + | chr7_3:9355999-9356018 | Msa1092500:CDS | 35.0% | |
| !! | TCTCTCCATGCATTGTTTTA+AGG | - | chr7_3:9356007-9356026 | None:intergenic | 35.0% |
| TAAAACAATGCATGGAGAGA+TGG | + | chr7_3:9356007-9356026 | Msa1092500:CDS | 35.0% | |
| GTTGTCTCCAAATATGTTGT+GGG | - | chr7_3:9356530-9356549 | None:intergenic | 35.0% | |
| AGTTGTCTCCAAATATGTTG+TGG | - | chr7_3:9356531-9356550 | None:intergenic | 35.0% | |
| ACAACATATTTGGAGACAAC+TGG | + | chr7_3:9356530-9356549 | Msa1092500:CDS | 35.0% | |
| GAAATTTCAAGAAGATTGCC+AGG | + | chr7_3:9356556-9356575 | Msa1092500:CDS | 35.0% | |
| AGAATGCCAAGAAAAAATCC+AGG | + | chr7_3:9356629-9356648 | Msa1092500:CDS | 35.0% | |
| !!! | CATGTTCCTGGATTTTTTCT+TGG | - | chr7_3:9356638-9356657 | None:intergenic | 35.0% |
| CAAGAAAAAATCCAGGAACA+TGG | + | chr7_3:9356636-9356655 | Msa1092500:CDS | 35.0% | |
| ! | GAAATTGATTTCCTGCTTCA+TGG | - | chr7_3:9356794-9356813 | None:intergenic | 35.0% |
| GCAGGAAATCAATTTCATGA+AGG | + | chr7_3:9356798-9356817 | Msa1092500:CDS | 35.0% | |
| ! | AATTTCATGAAGGCCTTATG+TGG | + | chr7_3:9356808-9356827 | Msa1092500:CDS | 35.0% |
| TAAGGAACATCATATGGATG+AGG | + | chr7_3:9355626-9355645 | Msa1092500:CDS | 35.0% | |
| ! | AGTTTTGCAACCAGTGAAAT+TGG | + | chr7_3:9355663-9355682 | Msa1092500:CDS | 35.0% |
| TGCTTATGGTAAATGAGAAC+GGG | - | chr7_3:9355717-9355736 | None:intergenic | 35.0% | |
| CTGCTTATGGTAAATGAGAA+CGG | - | chr7_3:9355718-9355737 | None:intergenic | 35.0% | |
| ! | GAATAGTATTCTGCTGCTTA+TGG | - | chr7_3:9355731-9355750 | None:intergenic | 35.0% |
| TAAGCAGCAGAATACTATTC+AGG | + | chr7_3:9355731-9355750 | Msa1092500:CDS | 35.0% | |
| TCGATTTAGAAAGAGATCCA+CGG | - | chr7_3:9355980-9355999 | None:intergenic | 35.0% | |
| TGGATCTCTTTCTAAATCGA+TGG | + | chr7_3:9355980-9355999 | Msa1092500:CDS | 35.0% | |
| ATGGACCTTAAAACAATGCA+TGG | + | chr7_3:9355999-9356018 | Msa1092500:CDS | 35.0% | |
| !! | TCTCTCCATGCATTGTTTTA+AGG | - | chr7_3:9356007-9356026 | None:intergenic | 35.0% |
| TAAAACAATGCATGGAGAGA+TGG | + | chr7_3:9356007-9356026 | Msa1092500:CDS | 35.0% | |
| GTTGTCTCCAAATATGTTGT+GGG | - | chr7_3:9356530-9356549 | None:intergenic | 35.0% | |
| AGTTGTCTCCAAATATGTTG+TGG | - | chr7_3:9356531-9356550 | None:intergenic | 35.0% | |
| ACAACATATTTGGAGACAAC+TGG | + | chr7_3:9356530-9356549 | Msa1092500:CDS | 35.0% | |
| GAAATTTCAAGAAGATTGCC+AGG | + | chr7_3:9356556-9356575 | Msa1092500:CDS | 35.0% | |
| AGAATGCCAAGAAAAAATCC+AGG | + | chr7_3:9356629-9356648 | Msa1092500:CDS | 35.0% | |
| !!! | CATGTTCCTGGATTTTTTCT+TGG | - | chr7_3:9356638-9356657 | None:intergenic | 35.0% |
| CAAGAAAAAATCCAGGAACA+TGG | + | chr7_3:9356636-9356655 | Msa1092500:CDS | 35.0% | |
| ! | GAAATTGATTTCCTGCTTCA+TGG | - | chr7_3:9356794-9356813 | None:intergenic | 35.0% |
| GCAGGAAATCAATTTCATGA+AGG | + | chr7_3:9356798-9356817 | Msa1092500:CDS | 35.0% | |
| ! | AATTTCATGAAGGCCTTATG+TGG | + | chr7_3:9356808-9356827 | Msa1092500:CDS | 35.0% |
| TGGTTGCAAAACTAGAGTGA+TGG | - | chr7_3:9355656-9355675 | None:intergenic | 40.0% | |
| ! | TAGCATTTTTGTCGAATCCG+TGG | + | chr7_3:9355960-9355979 | Msa1092500:intron | 40.0% |
| TACAAGACACCACATCCATT+AGG | - | chr7_3:9356353-9356372 | None:intergenic | 40.0% | |
| GATCAAGCCCACAACATATT+TGG | + | chr7_3:9356520-9356539 | Msa1092500:CDS | 40.0% | |
| ACATAACTATCGTTACGTCC+TGG | - | chr7_3:9356577-9356596 | None:intergenic | 40.0% | |
| ! | CTCAATTTTCACCATGTTCC+TGG | - | chr7_3:9356650-9356669 | None:intergenic | 40.0% |
| ACTACTCCAGAAGATGAACT+TGG | + | chr7_3:9356700-9356719 | Msa1092500:CDS | 40.0% | |
| TATCCACCAAGTTCATCTTC+TGG | - | chr7_3:9356709-9356728 | None:intergenic | 40.0% | |
| !! | TGGATTAGAGTTTTATCCCG+AGG | + | chr7_3:9356765-9356784 | Msa1092500:CDS | 40.0% |
| TGGTTGCAAAACTAGAGTGA+TGG | - | chr7_3:9355656-9355675 | None:intergenic | 40.0% | |
| ! | TAGCATTTTTGTCGAATCCG+TGG | + | chr7_3:9355960-9355979 | Msa1092500:intron | 40.0% |
| TACAAGACACCACATCCATT+AGG | - | chr7_3:9356353-9356372 | None:intergenic | 40.0% | |
| GATCAAGCCCACAACATATT+TGG | + | chr7_3:9356520-9356539 | Msa1092500:CDS | 40.0% | |
| ACATAACTATCGTTACGTCC+TGG | - | chr7_3:9356577-9356596 | None:intergenic | 40.0% | |
| ! | CTCAATTTTCACCATGTTCC+TGG | - | chr7_3:9356650-9356669 | None:intergenic | 40.0% |
| ACTACTCCAGAAGATGAACT+TGG | + | chr7_3:9356700-9356719 | Msa1092500:CDS | 40.0% | |
| TATCCACCAAGTTCATCTTC+TGG | - | chr7_3:9356709-9356728 | None:intergenic | 40.0% | |
| !! | TGGATTAGAGTTTTATCCCG+AGG | + | chr7_3:9356765-9356784 | Msa1092500:CDS | 40.0% |
| ! | TGAGAACGGGTTCTTGATCA+TGG | - | chr7_3:9355704-9355723 | None:intergenic | 45.0% |
| GTAGAATGAGCCATTGAGTG+AGG | + | chr7_3:9356480-9356499 | Msa1092500:intron | 45.0% | |
| ! | TTTTGCTCCTCCTCACTCAA+TGG | - | chr7_3:9356493-9356512 | None:intergenic | 45.0% |
| ! | GGCATTCTCGACTTGCTTAA+TGG | - | chr7_3:9356617-9356636 | None:intergenic | 45.0% |
| ACTCCAGAAGATGAACTTGG+TGG | + | chr7_3:9356703-9356722 | Msa1092500:CDS | 45.0% | |
| ! | TGAGAACGGGTTCTTGATCA+TGG | - | chr7_3:9355704-9355723 | None:intergenic | 45.0% |
| GTAGAATGAGCCATTGAGTG+AGG | + | chr7_3:9356480-9356499 | Msa1092500:intron | 45.0% | |
| ! | TTTTGCTCCTCCTCACTCAA+TGG | - | chr7_3:9356493-9356512 | None:intergenic | 45.0% |
| ! | GGCATTCTCGACTTGCTTAA+TGG | - | chr7_3:9356617-9356636 | None:intergenic | 45.0% |
| ACTCCAGAAGATGAACTTGG+TGG | + | chr7_3:9356703-9356722 | Msa1092500:CDS | 45.0% | |
| !!! | ATTTTTTTATTTATTTTATG+CGG | - | chr7_3:9356158-9356177 | None:intergenic | 5.0% |
| !!! | ATTTTTTTATTTATTTTATG+CGG | - | chr7_3:9356158-9356177 | None:intergenic | 5.0% |
| GAATGAGCCATTGAGTGAGG+AGG | + | chr7_3:9356483-9356502 | Msa1092500:intron | 50.0% | |
| TTCCTGCTTCATGGGAACCT+CGG | - | chr7_3:9356785-9356804 | None:intergenic | 50.0% | |
| GAATGAGCCATTGAGTGAGG+AGG | + | chr7_3:9356483-9356502 | Msa1092500:intron | 50.0% | |
| TTCCTGCTTCATGGGAACCT+CGG | - | chr7_3:9356785-9356804 | None:intergenic | 50.0% | |
| TCCTGCTTCATGGGAACCTC+GGG | - | chr7_3:9356784-9356803 | None:intergenic | 55.0% | |
| TCCTGCTTCATGGGAACCTC+GGG | - | chr7_3:9356784-9356803 | None:intergenic | 55.0% | |
| TCCCGAGGTTCCCATGAAGC+AGG | + | chr7_3:9356780-9356799 | Msa1092500:CDS | 60.0% | |
| TCCCGAGGTTCCCATGAAGC+AGG | + | chr7_3:9356780-9356799 | Msa1092500:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 9355591 | 9356840 | 9355591 | ID=Msa1092500;Name=Msa1092500 |
| chr7_3 | mRNA | 9355591 | 9356840 | 9355591 | ID=Msa1092500-mRNA-1;Parent=Msa1092500;Name=Msa1092500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|225 |
| chr7_3 | exon | 9355591 | 9355820 | 9355591 | ID=Msa1092500-mRNA-1:exon:2638;Parent=Msa1092500-mRNA-1 |
| chr7_3 | exon | 9355963 | 9356053 | 9355963 | ID=Msa1092500-mRNA-1:exon:2639;Parent=Msa1092500-mRNA-1 |
| chr7_3 | exon | 9356484 | 9356840 | 9356484 | ID=Msa1092500-mRNA-1:exon:2640;Parent=Msa1092500-mRNA-1 |
| chr7_3 | CDS | 9355591 | 9355820 | 9355591 | ID=Msa1092500-mRNA-1:cds;Parent=Msa1092500-mRNA-1 |
| chr7_3 | CDS | 9355963 | 9356053 | 9355963 | ID=Msa1092500-mRNA-1:cds;Parent=Msa1092500-mRNA-1 |
| chr7_3 | CDS | 9356484 | 9356840 | 9356484 | ID=Msa1092500-mRNA-1:cds;Parent=Msa1092500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
