AlfalfaGEDB | Msa1092740

M. sativa cultivar zhongmu-4 / Msa1092740

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092740	XP_039688063.1	86.184	152	20	1	1	151	22	173	1.94e-87	273

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092740	A0A072U9Z0	76.871	147	22	3	4	149	48	183	2.16e-70	220

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TFs/TRs:

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Gene ID	Type	Classification
Msa1092740	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092740	MtrunA17_Chr4g0033611	36.029	136	71	5	26	155	61	186	4.11e-18	78.2
Msa1092740	MtrunA17_Chr2g0329421	34.307	137	79	3	16	150	1	128	2.76e-16	72.8
Msa1092740	MtrunA17_Chr7g0233911	37.069	116	58	4	41	151	33	138	5.91e-14	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092740	AT3G59470.3	37.838	111	58	3	41	149	69	170	1.72e-13	66.2
Msa1092740	AT3G59470.1	37.838	111	58	3	41	149	69	170	1.72e-13	66.2
Msa1092740	AT3G59470.2	37.838	111	58	3	41	149	81	182	2.19e-13	65.9
Msa1092740	AT3G07500.1	31.618	136	74	5	26	149	6	134	4.10e-12	62.0

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Find 19 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGTCTCTTGAAGTAAG+TGG	0.510860	7_3:+10380539	None:intergenic
ACTTCAAGAGACCGTTTCTA+AGG	0.391113	7_3:-10380533	None:intergenic
AGAAGGGCTTTAACAAGAGA+AGG	0.550276	7_3:-10380641	Msa1092740:CDS
AGTTGATGTATCTTTGTCCA+TGG	0.526717	7_3:+10381375	None:intergenic
CCAAATACATCAGTTTGAAT+TGG	0.335509	7_3:-10381432	None:intergenic
CTGTCAAGGTTAGAAGAAGA+AGG	0.491761	7_3:-10380658	Msa1092740:CDS
GATGAATTAAAGCCTATGAT+TGG	0.477938	7_3:-10380869	Msa1092740:CDS
GCAAAGTGAATCTACTGTCA+AGG	0.595204	7_3:-10380672	Msa1092740:CDS
GCCAAATAAGAAGGATGGTA+AGG	0.493986	7_3:-10380696	Msa1092740:CDS
GGGTTATTTGCCAAATAAGA+AGG	0.490320	7_3:-10380705	Msa1092740:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGGAACCAACAAAAAAAT+AGG	+	chr7_3:10380713-10380732	None:intergenic	30.0%
GATGAATTAAAGCCTATGAT+TGG	-	chr7_3:10381084-10381103	Msa1092740:intron	30.0%
TCAAATACTTGTCCAATCAT+AGG	+	chr7_3:10381099-10381118	None:intergenic	30.0%
GTATTTGATATGTTAGCAGA+AGG	-	chr7_3:10381111-10381130	Msa1092740:intron	30.0%
TATTTGCCAAATAAGAAGGA+TGG	-	chr7_3:10381252-10381271	Msa1092740:intron	30.0%
AGTGGAACCAACAAAAAAAT+AGG	+	chr7_3:10380713-10380732	None:intergenic	30.0%
GATGAATTAAAGCCTATGAT+TGG	-	chr7_3:10381084-10381103	Msa1092740:intron	30.0%
TCAAATACTTGTCCAATCAT+AGG	+	chr7_3:10381099-10381118	None:intergenic	30.0%
GTATTTGATATGTTAGCAGA+AGG	-	chr7_3:10381111-10381130	Msa1092740:intron	30.0%
TATTTGCCAAATAAGAAGGA+TGG	-	chr7_3:10381252-10381271	Msa1092740:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	10380535	10381440	10380535	ID=Msa1092740;Name=Msa1092740
chr7_3	mRNA	10380535	10381440	10380535	ID=Msa1092740-mRNA-1;Parent=Msa1092740;Name=Msa1092740-mRNA-1;_AED=0.36;_eAED=0.38;_QI=0\|0\|0\|1\|1\|1\|2\|0\|155
chr7_3	exon	10381357	10381440	10381357	ID=Msa1092740-mRNA-1:exon:2768;Parent=Msa1092740-mRNA-1
chr7_3	exon	10380535	10380918	10380535	ID=Msa1092740-mRNA-1:exon:2767;Parent=Msa1092740-mRNA-1
chr7_3	CDS	10381357	10381440	10381357	ID=Msa1092740-mRNA-1:cds;Parent=Msa1092740-mRNA-1
chr7_3	CDS	10380535	10380918	10380535	ID=Msa1092740-mRNA-1:cds;Parent=Msa1092740-mRNA-1

Gene Sequence

>Msa1092740

TTGAATTGGATAACTTGCACTTCTATTGAGTTACGTTCATTCTCCATGGACAAAGATACATCAACTTGTTTTCAAATTCCTCAGGAATATGAATGTGTGCCAAATTGTGATGATGAATTAAAGCCTATGATTGGACAAGTATTTGATATGTTAGCAGAAGGTAAAAAAATTTACGAAAAATACGCACTCTCTGTCGGATTTAGAGTGCGTTCATCATCATCGACTATAGATAAAAACGGTGTGAAGCGTTGGAAGTATTTTGTTTGCTCGAAAGAGGGTTATTTGCCAAATAAGAAGGATGGTAAGGAGCAAAGTGAATCTACTGTCAAGGTTAGAAGAAGAAGGGCTTTAACAAGAGAAGGATGCAATGCAAATGTTGTTTTCAAATGGGTGGGGGAAGGTAAGTATGAGATAGCTCGATTTCATGAAAACCATACACATCCACTTACTTCAAGAGACCGTTTCTAA

Protein sequence

>Msa1092740

LNWITCTSIELRSFSMDKDTSTCFQIPQEYECVPNCDDELKPMIGQVFDMLAEGKKIYEKYALSVGFRVRSSSSTIDKNGVKRWKYFVCSKEGYLPNKKDGKEQSESTVKVRRRRALTREGCNANVVFKWVGEGKYEIARFHENHTHPLTSRDRF*