AlfalfaGEDB | Msa1092750

M. sativa cultivar zhongmu-4 / Msa1092750

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092750	XP_039688063.1	87.500	136	17	0	1	136	38	173	1.05e-80	255

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092750	A0A072U9Z0	77.612	134	19	2	1	134	61	183	1.65e-66	209

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TFs/TRs:

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Gene ID	Type	Classification
Msa1092750	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092750	MtrunA17_Chr4g0033611	36.029	136	71	5	11	140	61	186	7.43e-19	79.7
Msa1092750	MtrunA17_Chr2g0329421	34.307	137	79	3	1	135	1	128	4.97e-17	73.9
Msa1092750	MtrunA17_Chr7g0233911	37.069	116	58	4	26	136	33	138	1.51e-14	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1092750	AT3G59470.3	37.838	111	58	3	26	134	69	170	3.37e-14	67.4
Msa1092750	AT3G59470.1	37.838	111	58	3	26	134	69	170	3.37e-14	67.4
Msa1092750	AT3G59470.2	37.838	111	58	3	26	134	81	182	3.86e-14	67.4
Msa1092750	AT3G07500.1	31.579	133	73	4	13	134	9	134	2.80e-13	64.7

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Find 17 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGTCTCTCGAAGTAAG+TGG	0.540000	7_3:+10390099	None:intergenic
ACTTCGAGAGACCGTTTCTA+AGG	0.392704	7_3:-10390093	None:intergenic
AGAAGGGCTTTAACAAGAGA+AGG	0.550276	7_3:-10390201	Msa1092750:CDS
AGTTGATGTATCTTTGTCCA+TGG	0.526717	7_3:+10390936	None:intergenic
CTGTCAAGGTTAGAAGAAGA+AGG	0.491761	7_3:-10390218	Msa1092750:CDS
GATGAATTAAAGCCTATGAT+TGG	0.477938	7_3:-10390429	Msa1092750:CDS
GCAAAGTGAATCTACTGTCA+AGG	0.595204	7_3:-10390232	Msa1092750:CDS
GCCAAATAAGAAGGATGGTA+AGG	0.493986	7_3:-10390256	Msa1092750:CDS
GGGTTATTTGCCAAATAAGA+AGG	0.490320	7_3:-10390265	Msa1092750:CDS
GTATTTGATACGTTAGCAGA+AGG	0.613843	7_3:-10390402	Msa1092750:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGGAACCAACAAAAAAAT+AGG	+	chr7_3:10390228-10390247	None:intergenic	30.0%
GATGAATTAAAGCCTATGAT+TGG	-	chr7_3:10390600-10390619	Msa1092750:intron	30.0%
TCAAATACTTGTCCAATCAT+AGG	+	chr7_3:10390615-10390634	None:intergenic	30.0%
TATTTGCCAAATAAGAAGGA+TGG	-	chr7_3:10390768-10390787	Msa1092750:intron	30.0%
AGTGGAACCAACAAAAAAAT+AGG	+	chr7_3:10390228-10390247	None:intergenic	30.0%
GATGAATTAAAGCCTATGAT+TGG	-	chr7_3:10390600-10390619	Msa1092750:intron	30.0%
TCAAATACTTGTCCAATCAT+AGG	+	chr7_3:10390615-10390634	None:intergenic	30.0%
TATTTGCCAAATAAGAAGGA+TGG	-	chr7_3:10390768-10390787	Msa1092750:intron	30.0%
AACCACCTAAGATTAATGCA+GGG	+	chr7_3:10390405-10390424	None:intergenic	35.0%
AAACCACCTAAGATTAATGC+AGG	+	chr7_3:10390406-10390425	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	10390095	10390956	10390095	ID=Msa1092750;Name=Msa1092750
chr7_3	mRNA	10390095	10390956	10390095	ID=Msa1092750-mRNA-1;Parent=Msa1092750;Name=Msa1092750-mRNA-1;_AED=0.42;_eAED=0.44;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|140
chr7_3	exon	10390918	10390956	10390918	ID=Msa1092750-mRNA-1:exon:2770;Parent=Msa1092750-mRNA-1
chr7_3	exon	10390095	10390478	10390095	ID=Msa1092750-mRNA-1:exon:2769;Parent=Msa1092750-mRNA-1
chr7_3	CDS	10390918	10390956	10390918	ID=Msa1092750-mRNA-1:cds;Parent=Msa1092750-mRNA-1
chr7_3	CDS	10390095	10390478	10390095	ID=Msa1092750-mRNA-1:cds;Parent=Msa1092750-mRNA-1

Gene Sequence

>Msa1092750

ATGGACAAAGATACATCAACTTGTTTTCAAATTCCTCAGGACTATGAATGTGTGCCAAATTGTGATGATGAATTAAAGCCTATGATTGGACAAGTATTTGATACGTTAGCAGAAGGTAAAAAAATTTACGAAAAATACGCACTCTCTGTCGGATTTAGAGTGCGTTCATCATCATCGACTATAGATAAAAACGGTGTGAAGCGTTGGAAGTATTTTGTTTGCTCGAAAGAGGGTTATTTGCCAAATAAGAAGGATGGTAAGGAGCAAAGTGAATCTACTGTCAAGGTTAGAAGAAGAAGGGCTTTAACAAGAGAAGGATGCAATGCAAATGTTGTTTTCAAATGGGTGGGGGAAGGTAAGTATGAGATAGCTCGATTTCATGAAAACCATACACATCCACTTACTTCGAGAGACCGTTTCTAA

Protein sequence

>Msa1092750

MDKDTSTCFQIPQDYECVPNCDDELKPMIGQVFDTLAEGKKIYEKYALSVGFRVRSSSSTIDKNGVKRWKYFVCSKEGYLPNKKDGKEQSESTVKVRRRRALTREGCNANVVFKWVGEGKYEIARFHENHTHPLTSRDRF*