AlfalfaGEDB | Msa1093210

M. sativa cultivar zhongmu-4 / Msa1093210

KEGG: -
GO: -
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1093210	XP_013448091.1	81.156	467	31	4	11	422	37	501	0.0	721

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1093210	sp\|Q6NQK2\|NAC8_ARATH	36.028	433	233	11	3	412	27	438	1.23e-71	235

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1093210	A0A072TZ22	81.156	467	31	4	11	422	37	501	0.0	721

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TFs/TRs:

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Gene ID	Type	Classification
Msa1093210	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1093210	MtrunA17_Chr7g0227071	81.156	467	31	4	11	422	37	501	0.0	721
Msa1093210	MtrunA17_Chr5g0422431	37.674	430	225	9	6	415	30	436	1.13e-83	263
Msa1093210	MtrunA17_Chr1g0198751	51.316	228	101	3	9	228	33	258	1.61e-75	243
Msa1093210	MtrunA17_Chr2g0282871	51.961	204	89	3	25	222	48	248	1.31e-64	209
Msa1093210	MtrunA17_Chr4g0046431	58.333	168	65	2	25	190	63	227	9.75e-63	205
Msa1093210	MtrunA17_Chr4g0040541	52.941	187	88	0	25	211	43	229	3.10e-62	202
Msa1093210	MtrunA17_Chr8g0367761	59.146	164	62	2	25	186	63	223	3.44e-61	199
Msa1093210	MtrunA17_Chr8g0389661	56.725	171	68	2	26	190	43	213	1.05e-58	199
Msa1093210	MtrunA17_Chr2g0324961	51.892	185	88	1	26	210	45	228	2.32e-54	182
Msa1093210	MtrunA17_Chr1g0198741	47.518	141	69	2	88	224	10	149	1.02e-35	133

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1093210	AT1G25580.1	36.028	433	233	11	3	412	27	438	1.26e-72	235
Msa1093210	AT5G14490.2	53.571	196	88	3	21	216	46	238	2.05e-66	213
Msa1093210	AT5G14490.4	53.571	196	88	3	21	216	46	238	2.76e-66	215
Msa1093210	AT5G14490.1	53.571	196	88	3	21	216	49	241	3.14e-66	215
Msa1093210	AT5G14490.3	53.571	196	88	3	21	216	49	241	5.12e-66	215
Msa1093210	AT3G01600.1	50.980	204	92	3	11	214	37	232	2.84e-62	205
Msa1093210	AT4G29230.3	55.814	172	69	1	26	190	44	215	5.56e-61	204
Msa1093210	AT4G28500.1	52.273	176	84	0	26	201	55	230	1.18e-60	199
Msa1093210	AT4G29230.2	55.814	172	69	1	26	190	43	214	1.30e-60	205
Msa1093210	AT4G29230.1	55.814	172	69	1	26	190	44	215	1.30e-60	205

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Find 119 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACATACAACTTTGCA+TGG	0.525483	7_3:-12738118	Msa1093210:CDS
AAAACGCTTCTGGTACAAAA+AGG	0.355639	7_3:+12737479	None:intergenic
AAAATGCATCAGTACCATCT+AGG	0.444254	7_3:-12738868	Msa1093210:CDS
AAAGCCTCACATGTTTATCG+AGG	0.687510	7_3:-12740171	Msa1093210:CDS
AAAGTTTGATCCTTCTGATG+TGG	0.545313	7_3:-12740237	Msa1093210:CDS
AAATCTCGTCACACAATAAT+AGG	0.320076	7_3:+12737835	None:intergenic
AAATGCATCAGTACCATCTA+GGG	0.560385	7_3:-12738867	Msa1093210:CDS
AAATTCGGATTATTCCGGCT+TGG	0.537500	7_3:-12737862	Msa1093210:CDS
AACAACTCTGCATGGTTGGC+TGG	0.431062	7_3:-12737903	Msa1093210:CDS
AACCACGATGATGAATCTTT+CGG	0.451588	7_3:+12739031	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCCATAGCAAACATTACAT+AGG	-	chr7_3:12737350-12737369	Msa1093210:three_prime_UTR	30.0%
AAAGAGATAGAGAGAGAAAA+TGG	-	chr7_3:12737430-12737449	Msa1093210:three_prime_UTR	30.0%
GTATTGTCAATTGTGTAGTA+GGG	-	chr7_3:12737824-12737843	Msa1093210:CDS	30.0%
ATTTACAATTTGGGGGTTTA+TGG	-	chr7_3:12737991-12738010	Msa1093210:CDS	30.0%
TTTACAATTTGGGGGTTTAT+GGG	-	chr7_3:12737992-12738011	Msa1093210:CDS	30.0%
GAAAACCACCAAAAATACAA+GGG	+	chr7_3:12738288-12738307	None:intergenic	30.0%
AGAAAACCACCAAAAATACA+AGG	+	chr7_3:12738289-12738308	None:intergenic	30.0%
GAATGGCTAATTAACATAAG+AGG	-	chr7_3:12738544-12738563	Msa1093210:intron	30.0%
AAAAATGCAGGTATAGGAAT+TGG	+	chr7_3:12739031-12739050	None:intergenic	30.0%
CAAAAGAAAAATGCAGGTAT+AGG	+	chr7_3:12739037-12739056	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	12737211	12742280	12737211	ID=Msa1093210;Name=Msa1093210
chr7_3	mRNA	12737211	12742280	12737211	ID=Msa1093210-mRNA-1;Parent=Msa1093210;Name=Msa1093210-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.5\|0.4\|0.8\|1\|1\|5\|311\|422
chr7_3	exon	12737211	12737578	12737211	ID=Msa1093210-mRNA-1:exon:2999;Parent=Msa1093210-mRNA-1
chr7_3	exon	12737674	12738198	12737674	ID=Msa1093210-mRNA-1:exon:2998;Parent=Msa1093210-mRNA-1
chr7_3	exon	12738696	12739129	12738696	ID=Msa1093210-mRNA-1:exon:2997;Parent=Msa1093210-mRNA-1
chr7_3	exon	12740108	12740294	12740108	ID=Msa1093210-mRNA-1:exon:2996;Parent=Msa1093210-mRNA-1
chr7_3	exon	12742215	12742280	12742215	ID=Msa1093210-mRNA-1:exon:2995;Parent=Msa1093210-mRNA-1
chr7_3	CDS	12742215	12742280	12742215	ID=Msa1093210-mRNA-1:cds;Parent=Msa1093210-mRNA-1
chr7_3	CDS	12740108	12740294	12740108	ID=Msa1093210-mRNA-1:cds;Parent=Msa1093210-mRNA-1
chr7_3	CDS	12738696	12739129	12738696	ID=Msa1093210-mRNA-1:cds;Parent=Msa1093210-mRNA-1
chr7_3	CDS	12737674	12738198	12737674	ID=Msa1093210-mRNA-1:cds;Parent=Msa1093210-mRNA-1
chr7_3	CDS	12737522	12737578	12737522	ID=Msa1093210-mRNA-1:cds;Parent=Msa1093210-mRNA-1
chr7_3	three_prime_UTR	12737211	12737521	12737211	ID=Msa1093210-mRNA-1:three_prime_utr;Parent=Msa1093210-mRNA-1

Gene Sequence

>Msa1093210

ATGAACCGAAGCTCCACCTACTGTTCCAATCCGAACCAAAAGGCTCGTGTCTTGCTTCAGTCAACGGTTTCTAGTGAATGGCCTGGCTTTCCCCTCGGCATAAAGTTTGATCCTTCTGATGTGGAAATATTGGAGCATTTAGCGGCTAAATGTGGTGTGGGGAACATAAAGCCTCACATGTTTATCGAGGAGTTCATACCAACATTGGAAGGAGAACAAGGCATTTGCTATACACATCCTGAAAATCTTCCAGGTGCTAAGAAAGATGGGAGCAGTGTTCATTTCTTTCACAGAACAATGAATGCATATAGTTCTGGTCAACGAAAGCGCCGAAAGATTCATCATCGTGGTTCGACTGAAGACCATGTACGCTGGCACAAGACTGGTAAGACCAAAGCTATAATAGAACATGGAGAACATAAGGGATTTAAGAAGATCATGGTTCTGTATATAAGATCTGAGAAAGAGTCCAAGTCCTACAAATCTGACTGGAAAATGCATCAGTACCATCTAGGGACTGATGAAGACGAGAAGAATGGAGAATACGTCGTTTCAAAAATATTTTATAAGCAGAATGAGAAAAATGAAGAGAAAGCAATGGCTGAAGAACCTGACAGTATAACATCGCGAACAAGTCCAAGGACTCCAAACCCAAATCCTCCAAATCCACCGCGTACAGGAAAATGTGATGTCAAGTCTATCCCTGTAGAATCAAATGCCATGCAATCTGATATTCAGGATCAGGAAAACACATACAACTTTGCATGGTTGGCTGGTGAATCACAGGCTGCCCCGCAATTTGATATTCAGGATCAGGACAACACATTCAACTCTGCATGGTTGGCTGGTGAATCACAGGCTGCCCTGCAATCTGATATTCAGGATCACGACAACTCTGCATGGTTGGCCGGTGAATCGCAAGCTGCCCTGCAAACTGATATTCAGAATCAGGATAACACAAACAACTCTGCATGGTTGGCTGGTGAATCGCAGGCTATGGAAAATTCGGATTATTCCGGCTTGGATGACCTATTATTGTGTGACGAGATTTTTGATTCATCTGCTCTATTTACTGACTCTCAATTGGACTCGATCAATGACCTCACTCACTACGAAAACAAAATGACAGGAAATTATAATGTATCTAGTGAAACTTCAACTGCTGTCCTGGATAAACTGGAATTGGATACTCCTCCAGATTATGATCTTTCGAATTTGACATTTGGTTCTCAAGACGACAGTATCCTTGGTTTGATAGGCGGGCTATGA

Protein sequence

>Msa1093210

MNRSSTYCSNPNQKARVLLQSTVSSEWPGFPLGIKFDPSDVEILEHLAAKCGVGNIKPHMFIEEFIPTLEGEQGICYTHPENLPGAKKDGSSVHFFHRTMNAYSSGQRKRRKIHHRGSTEDHVRWHKTGKTKAIIEHGEHKGFKKIMVLYIRSEKESKSYKSDWKMHQYHLGTDEDEKNGEYVVSKIFYKQNEKNEEKAMAEEPDSITSRTSPRTPNPNPPNPPRTGKCDVKSIPVESNAMQSDIQDQENTYNFAWLAGESQAAPQFDIQDQDNTFNSAWLAGESQAALQSDIQDHDNSAWLAGESQAALQTDIQNQDNTNNSAWLAGESQAMENSDYSGLDDLLLCDEIFDSSALFTDSQLDSINDLTHYENKMTGNYNVSSETSTAVLDKLELDTPPDYDLSNLTFGSQDDSILGLIGGL*