AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1093660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093660 MtrunA17_Chr6g0468491 71.827 323 69 5 24 333 1 314 8.24e-159 446
Msa1093660 MtrunA17_Chr7g0225901 77.622 286 19 2 24 309 1 241 2.83e-158 442
Msa1093660 MtrunA17_Chr2g0307131 65.651 361 89 7 1 332 1 355 4.63e-152 431
Msa1093660 MtrunA17_Chr2g0307141 65.840 363 91 7 1 333 1 360 1.02e-143 410
Msa1093660 MtrunA17_Chr4g0033391 64.201 338 95 8 1 331 1 319 3.78e-136 389
Msa1093660 MtrunA17_Chr4g0033291 64.058 345 96 8 1 333 1 329 4.71e-136 389
Msa1093660 MtrunA17_Chr4g0033281 61.143 350 93 8 1 332 1 325 3.37e-124 359
Msa1093660 MtrunA17_Chr6g0468461 62.388 335 75 9 1 308 1 311 6.39e-122 354
Msa1093660 MtrunA17_Chr4g0054581 52.320 388 121 10 1 333 1 379 3.47e-113 333
Msa1093660 MtrunA17_Chr4g0054621 46.175 366 140 14 1 333 1 342 4.40e-81 250
Msa1093660 MtrunA17_Chr5g0400621 43.769 329 156 10 18 332 20 333 2.16e-63 204
Msa1093660 MtrunA17_Chr5g0400661 36.735 343 174 10 14 328 7 334 5.73e-54 180
Msa1093660 MtrunA17_Chr2g0280161 46.667 210 94 4 133 331 151 353 2.56e-52 176
Msa1093660 MtrunA17_Chr5g0400641 54.268 164 66 4 159 317 1 160 2.72e-49 162
Msa1093660 MtrunA17_Chr4g0054561 38.971 272 151 6 64 323 52 320 9.13e-48 163
Msa1093660 MtrunA17_Chr4g0002801 44.144 222 103 8 125 329 114 331 2.23e-47 162
Msa1093660 MtrunA17_Chr4g0054551 36.397 272 158 5 64 323 52 320 1.56e-45 157
Msa1093660 MtrunA17_Chr4g0049331 44.211 190 94 3 148 331 127 310 9.62e-44 152
Msa1093660 MtrunA17_Chr4g0002781 39.732 224 114 6 125 329 129 350 3.88e-43 152
Msa1093660 MtrunA17_Chr8g0336681 45.251 179 87 4 155 324 155 331 1.86e-41 147
Msa1093660 MtrunA17_Chr5g0400671 45.198 177 92 3 153 328 151 323 1.00e-39 142
Msa1093660 MtrunA17_Chr7g0249811 39.806 206 115 2 124 329 133 329 2.58e-39 141
Msa1093660 MtrunA17_Chr4g0054571 35.780 327 175 11 14 330 30 331 1.34e-38 139
Msa1093660 MtrunA17_Chr2g0333621 40.609 197 112 3 139 332 121 315 1.75e-38 139
Msa1093660 MtrunA17_Chr2g0333641 41.176 187 104 4 139 323 120 302 1.81e-38 139
Msa1093660 MtrunA17_Chr2g0333541 38.813 219 125 3 112 327 55 267 9.31e-36 130
Msa1093660 MtrunA17_Chr2g0333611 38.068 176 103 2 157 330 46 217 3.56e-34 125
Msa1093660 MtrunA17_Chr4g0002851 35.484 155 68 3 179 326 65 194 8.67e-24 96.7
Msa1093660 MtrunA17_Chr7g0233441 37.584 149 81 4 179 326 57 194 2.35e-23 95.5
Msa1093660 MtrunA17_Chr4g0002831 33.333 168 88 4 166 326 52 202 1.61e-21 90.9
Msa1093660 MtrunA17_Chr8g0366751 32.973 185 104 5 135 300 434 617 1.20e-17 84.0
Msa1093660 MtrunA17_Chr8g0346151 33.613 119 65 3 156 265 279 392 3.59e-15 76.3
Msa1093660 MtrunA17_Chr5g0411341 31.073 177 102 5 142 300 474 648 3.73e-15 76.3
Msa1093660 MtrunA17_Chr1g0185621 28.834 163 98 4 142 289 457 616 6.74e-15 75.5
Msa1093660 MtrunA17_Chr8g0346161 29.167 168 92 5 138 285 263 423 2.03e-14 73.9
Msa1093660 MtrunA17_Chr7g0275821 31.034 145 90 3 156 299 252 387 7.02e-14 72.0
Msa1093660 MtrunA17_Chr3g0131691 26.316 209 136 5 135 330 277 480 1.90e-13 70.9
Msa1093660 MtrunA17_Chr8g0386921 42.466 73 42 0 148 220 398 470 7.98e-13 69.3
Msa1093660 MtrunA17_Chr7g0260841 29.000 200 111 8 79 247 252 451 1.14e-12 68.6
Msa1093660 MtrunA17_Chr1g0211081 29.412 187 101 7 137 292 295 481 1.19e-11 65.5
Msa1093660 MtrunA17_Chr8g0365711 26.923 156 103 4 158 305 246 398 1.20e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093660 AT4G37850.2 42.927 205 102 5 139 331 127 328 2.77e-45 157
Msa1093660 AT4G37850.1 42.927 205 102 5 139 331 127 328 2.77e-45 157
Msa1093660 AT2G22760.1 43.229 192 96 6 147 326 103 293 3.95e-45 156
Msa1093660 AT2G22750.2 44.670 197 100 4 140 330 111 304 6.70e-39 140
Msa1093660 AT2G22750.3 44.670 197 100 4 140 330 139 332 7.08e-39 140
Msa1093660 AT2G22750.5 44.670 197 100 4 140 330 135 328 8.61e-39 140
Msa1093660 AT2G22760.2 42.197 173 88 5 147 308 103 274 1.78e-37 135
Msa1093660 AT2G22750.1 44.670 197 99 5 140 330 111 303 2.09e-37 136
Msa1093660 AT2G22750.4 44.670 197 99 5 140 330 139 331 2.30e-37 136
Msa1093660 AT2G22770.1 38.009 221 109 5 133 326 98 317 1.47e-35 131
Msa1093660 AT4G17880.1 34.731 167 98 4 142 300 397 560 2.51e-17 83.2
Msa1093660 AT1G32640.1 32.394 142 87 2 156 292 452 589 1.88e-16 80.9
Msa1093660 AT5G46760.1 29.730 185 113 7 142 313 396 576 3.95e-15 76.6
Msa1093660 AT1G63650.3 28.402 169 98 5 156 304 405 570 8.24e-14 72.8
Msa1093660 AT1G63650.1 28.402 169 98 5 156 304 405 570 8.24e-14 72.8
Msa1093660 AT1G63650.2 28.402 169 98 5 156 304 405 570 8.24e-14 72.8
Msa1093660 AT5G41315.2 27.586 174 98 4 156 304 449 619 8.51e-13 69.7
Msa1093660 AT5G41315.1 27.586 174 98 4 156 304 441 611 8.85e-13 69.7
Msa1093660 AT5G41315.3 27.586 174 98 4 156 304 446 616 9.21e-13 69.7
Msa1093660 AT4G16430.1 42.683 82 42 1 140 216 299 380 1.04e-12 68.9
Msa1093660 AT2G46510.1 44.304 79 39 2 142 215 376 454 1.05e-12 69.3
Msa1093660 AT1G01260.1 34.821 112 63 2 146 250 416 524 1.16e-12 69.3
Msa1093660 AT1G01260.2 34.821 112 63 2 146 250 416 524 1.16e-12 69.3
Msa1093660 AT1G01260.3 34.821 112 63 2 146 250 416 524 1.16e-12 69.3
Msa1093660 AT3G26744.1 29.091 165 107 2 157 311 308 472 1.63e-11 65.5
Msa1093660 AT3G26744.4 29.091 165 107 2 157 311 308 472 1.63e-11 65.5
Msa1093660 AT3G26744.2 29.091 165 107 2 157 311 308 472 1.63e-11 65.5
Msa1093660 AT1G12860.1 28.902 173 116 4 157 323 268 439 5.88e-11 63.5

Find 47 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTTGTAGTGGATGAATT+TGG 0.179475 7_3:-14102233 None:intergenic
CAAGTGGAAGCAAGAGTCTT+AGG 0.227099 7_3:+14103405 Msa1093660:CDS
AATAGTAGTGTCTTACCTTT+TGG 0.280739 7_3:+14103522 Msa1093660:CDS
CAACAGCTGGTTATCTGATT+TGG 0.283101 7_3:+14100287 Msa1093660:CDS
AATTTGTAGTGGATGAATTT+GGG 0.291366 7_3:-14102232 None:intergenic
TCCACATCTATAAGGAAATT+CGG 0.302534 7_3:-14102020 None:intergenic
ACAAATTCCTTACAATTTAG+TGG 0.309622 7_3:+14102248 Msa1093660:CDS
GATGAGTTAGAAGAAAGTTT+TGG 0.345146 7_3:-14102176 None:intergenic
CAGAAGAGTCATCGAGAAAA+AGG 0.350658 7_3:+14102336 Msa1093660:CDS
TTCAAATCCACTAAATTGTA+AGG 0.351709 7_3:-14102255 None:intergenic
GGGACTTATAGTTAAAATTA+TGG 0.357813 7_3:+14103467 Msa1093660:CDS
GAAGCTCTTCCACATCTATA+AGG 0.379411 7_3:-14102028 None:intergenic
ACTCTTGCTTCCACTTGAAA+TGG 0.394913 7_3:-14103399 None:intergenic
GTCCCCTGTGCTCTTGGCAT+TGG 0.400312 7_3:-14103449 None:intergenic
CCACATCTATAAGGAAATTC+GGG 0.402643 7_3:-14102019 None:intergenic
CTATAAGTCCCCTGTGCTCT+TGG 0.402896 7_3:-14103455 None:intergenic
ATCAACAATGTTTGACTTCG+AGG 0.419284 7_3:+14102090 Msa1093660:CDS
ACCAGTGTCTCCAACTGAAA+TGG 0.420736 7_3:+14102286 Msa1093660:CDS
TAGGGAAATATATGTTGATT+CGG 0.438258 7_3:+14103424 Msa1093660:CDS
ATCACTATAAATGCCTGGTT+TGG 0.451938 7_3:-14103328 None:intergenic
AAGTGGAAGCAAGAGTCTTA+GGG 0.455524 7_3:+14103406 Msa1093660:CDS
GAGAACCTTCATAGTGTTGT+TGG 0.457272 7_3:+14103372 Msa1093660:CDS
TCCATTTCAGTTGGAGACAC+TGG 0.482760 7_3:-14102287 None:intergenic
GGATCCAATGCCAAGAGCAC+AGG 0.490309 7_3:+14103445 Msa1093660:CDS
GGTCTCTACCTGAGCAATGA+TGG 0.493468 7_3:-14103565 None:intergenic
AAAAGGTCTCGTGGTAATCA+TGG 0.510954 7_3:+14102353 Msa1093660:CDS
CAAGTGGTTGTGACCAAACC+AGG 0.515887 7_3:+14103315 Msa1093660:CDS
AGGTTACAACATGAACATAA+AGG 0.516117 7_3:+14104137 Msa1093660:CDS
AAATTATGGTCGAAATTCAA+AGG 0.523147 7_3:+14103481 Msa1093660:CDS
CGACGTGACCATCATTGCTC+AGG 0.526856 7_3:+14103557 Msa1093660:CDS
TTGTCATCACTATAAATGCC+TGG 0.527391 7_3:-14103333 None:intergenic
CCCGAATTTCCTTATAGATG+TGG 0.531562 7_3:+14102019 Msa1093660:CDS
CGAATACAATTTAATTGCTG+AGG 0.543999 7_3:+14101989 Msa1093660:CDS
TCATGGTCATGATCATATCA+TGG 0.552733 7_3:+14102370 Msa1093660:CDS
GTAAACCAACAACACTATGA+AGG 0.554409 7_3:-14103377 None:intergenic
CAAATCAGATAACCAGCTGT+TGG 0.564229 7_3:-14100286 None:intergenic
AAGGTTCTCATCACATGAAG+AGG 0.579692 7_3:-14103358 None:intergenic
GATCCAATGCCAAGAGCACA+GGG 0.583908 7_3:+14103446 Msa1093660:CDS
TTTGGGGTGTTGTCAAAACA+TGG 0.585137 7_3:-14102215 None:intergenic
TCGATGATAGAATCTCCAAA+AGG 0.598134 7_3:-14103537 None:intergenic
AATCGACATCAACCAACAGC+TGG 0.599243 7_3:+14100274 Msa1093660:CDS
TGTTGGTTTACCATTTCAAG+TGG 0.603001 7_3:+14103389 Msa1093660:CDS
GTTGCTGAGAGTTGTGTGAG+TGG 0.604875 7_3:-14102114 None:intergenic
AAATTGTAAGGAATTTGTAG+TGG 0.612033 7_3:-14102243 None:intergenic
ATTTGTAGTGGATGAATTTG+GGG 0.649171 7_3:-14102231 None:intergenic
ACTTGTGAAGAACATACGCA+TGG 0.680721 7_3:+14104161 Msa1093660:CDS
ATCCAATGCCAAGAGCACAG+GGG 0.782046 7_3:+14103447 Msa1093660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTGAAAATAATTTAAATTA+GGG + chr7_3:14100456-14100475 Msa1093660:intron 10.0%
!!! AAAATTTAAAACATAATTAG+TGG + chr7_3:14103018-14103037 Msa1093660:intron 10.0%
!!! TAATACAATTTTTTAGTTTT+TGG + chr7_3:14103805-14103824 Msa1093660:intron 10.0%
!!! AATCTTAATTATTTTATAGA+TGG + chr7_3:14104110-14104129 Msa1093660:intron 10.0%
!! GCTTGAAAATAATTTAAATT+AGG + chr7_3:14100455-14100474 Msa1093660:intron 15.0%
!! AATATAAACATAGTACAAAA+TGG - chr7_3:14100807-14100826 None:intergenic 15.0%
!!! TTTTTTTTAAGAAGCTAAAA+TGG + chr7_3:14100835-14100854 Msa1093660:intron 15.0%
!! TCCTATTTATAAGAAAAAAT+TGG + chr7_3:14101493-14101512 Msa1093660:intron 15.0%
!! CCTATTTATAAGAAAAAATT+GGG + chr7_3:14101494-14101513 Msa1093660:intron 15.0%
!! ATCAAAAGATATTCAATATT+TGG - chr7_3:14102691-14102710 None:intergenic 15.0%
!! AAAAATAATCGTCAATTTAT+TGG + chr7_3:14102813-14102832 Msa1093660:intron 15.0%
!! AGTAAATGAATAAAGAAATA+TGG + chr7_3:14102893-14102912 Msa1093660:intron 15.0%
!! ATACAAAAATACTATAATCT+TGG + chr7_3:14103133-14103152 Msa1093660:intron 15.0%
!! TTGTATTAAAAAAATGTTAG+TGG - chr7_3:14103793-14103812 None:intergenic 15.0%
!! TATAATAATAGTAATAGTGA+TGG - chr7_3:14103833-14103852 None:intergenic 15.0%
!! ATAATTGTTATCATCTTAAA+AGG + chr7_3:14103882-14103901 Msa1093660:intron 15.0%
!! CATTTCTGAATTTAGAAAAT+AGG - chr7_3:14100342-14100361 None:intergenic 20.0%
!!! CTATTTTCTAAATTCAGAAA+TGG + chr7_3:14100340-14100359 Msa1093660:intron 20.0%
!!! TTATCCATTTTGTTTGTAAT+AGG - chr7_3:14100600-14100619 None:intergenic 20.0%
!! GTGAATTTAGAAAATAGAAA+GGG - chr7_3:14100696-14100715 None:intergenic 20.0%
!! TGTGAATTTAGAAAATAGAA+AGG - chr7_3:14100697-14100716 None:intergenic 20.0%
!!! CTATTTTCTAAATTCACAAA+TGG + chr7_3:14100699-14100718 Msa1093660:intron 20.0%
!! GTTAATGTTATGAAATGTTT+AGG - chr7_3:14101005-14101024 None:intergenic 20.0%
!!! TTGCTGAAACATTATATTTT+AGG - chr7_3:14101051-14101070 None:intergenic 20.0%
!! TAATCATTTGATACATCATT+GGG - chr7_3:14101123-14101142 None:intergenic 20.0%
!! ATAATCATTTGATACATCAT+TGG - chr7_3:14101124-14101143 None:intergenic 20.0%
!!! TGTTAGTATGACTTTTAAAA+AGG + chr7_3:14101239-14101258 Msa1093660:intron 20.0%
!! TATGAATATTTCGCATAATT+AGG + chr7_3:14101305-14101324 Msa1093660:intron 20.0%
!!! TCCCTTAATATGATTTTTTT+TGG + chr7_3:14101355-14101374 Msa1093660:intron 20.0%
!! GCCAAAAAAAATCATATTAA+GGG - chr7_3:14101359-14101378 None:intergenic 20.0%
!!! ATTGTAGAAGTATTAAACAT+AGG - chr7_3:14101406-14101425 None:intergenic 20.0%
!!! TTTTTTCTTATAAATAGGAC+CGG - chr7_3:14101492-14101511 None:intergenic 20.0%
!!! CCCAATTTTTTCTTATAAAT+AGG - chr7_3:14101497-14101516 None:intergenic 20.0%
!! CATTTGTGAATTTCAAAAAT+AGG - chr7_3:14101883-14101902 None:intergenic 20.0%
!!! CTATTTTTGAAATTCACAAA+TGG + chr7_3:14101881-14101900 Msa1093660:intron 20.0%
!!! ATTAAATTTTGTTCGATGAA+AGG - chr7_3:14102640-14102659 None:intergenic 20.0%
!! AATGAATAAAGAAATATGGT+TGG + chr7_3:14102897-14102916 Msa1093660:intron 20.0%
!! ATAATCTTGGTTACATTATT+TGG + chr7_3:14103146-14103165 Msa1093660:intron 20.0%
!! CGATATTGTAAAAATATGTT+AGG + chr7_3:14103188-14103207 Msa1093660:intron 20.0%
!! TATTGTAAAAATATGTTAGG+TGG + chr7_3:14103191-14103210 Msa1093660:intron 20.0%
!!! TAAAAGGAGTATTTTATTCT+AGG + chr7_3:14103898-14103917 Msa1093660:intron 20.0%
!!! ACTACAACATTTTTTGTTTT+AGG + chr7_3:14103933-14103952 Msa1093660:intron 20.0%
!!! AATTTGTTGTCTTTTGATTT+CGG + chr7_3:14104049-14104068 Msa1093660:intron 20.0%
!!! ATTATTTTATAGATGGATGA+AGG + chr7_3:14104117-14104136 Msa1093660:intron 20.0%
!! GATTTGGTAAGAAAATCAAA+AGG + chr7_3:14100303-14100322 Msa1093660:intron 25.0%
! CTGAATTTAGAAAATAGGAA+GGG - chr7_3:14100337-14100356 None:intergenic 25.0%
! TCTGAATTTAGAAAATAGGA+AGG - chr7_3:14100338-14100357 None:intergenic 25.0%
! ATATTTCCGAATATAAAGTG+GGG - chr7_3:14100496-14100515 None:intergenic 25.0%
! CATATTTCCGAATATAAAGT+GGG - chr7_3:14100497-14100516 None:intergenic 25.0%
! ACATATTTCCGAATATAAAG+TGG - chr7_3:14100498-14100517 None:intergenic 25.0%
! GAATCCAATTCTTAAACATT+CGG + chr7_3:14100541-14100560 Msa1093660:intron 25.0%
! CTATCCTATTACAAACAAAA+TGG + chr7_3:14100593-14100612 Msa1093660:intron 25.0%
!! TTTTCTAAATTCACAAATGG+TGG + chr7_3:14100702-14100721 Msa1093660:intron 25.0%
! ATGTTATGAAATGTTTAGGT+GGG - chr7_3:14101001-14101020 None:intergenic 25.0%
! AATGTTATGAAATGTTTAGG+TGG - chr7_3:14101002-14101021 None:intergenic 25.0%
! TGATTATATATTAACCCACT+TGG + chr7_3:14101137-14101156 Msa1093660:intron 25.0%
! AAAGGAAATTGATTGTATAC+TGG + chr7_3:14101257-14101276 Msa1093660:intron 25.0%
! CGCCAAAAAAAATCATATTA+AGG - chr7_3:14101360-14101379 None:intergenic 25.0%
! ATATAAATTAATACTCCCTC+CGG + chr7_3:14101470-14101489 Msa1093660:intron 25.0%
!! CTCAAGTTTTTCTTGTAAAT+AGG + chr7_3:14101576-14101595 Msa1093660:intron 25.0%
! ATATTAAATTATACTCCCTC+CGG - chr7_3:14101603-14101622 None:intergenic 25.0%
!!! CTTACGGTTTTTAGAATATA+AGG - chr7_3:14101688-14101707 None:intergenic 25.0%
! GTGAATTTCAAAAATAGGAA+GGG - chr7_3:14101878-14101897 None:intergenic 25.0%
! TGTGAATTTCAAAAATAGGA+AGG - chr7_3:14101879-14101898 None:intergenic 25.0%
!!! TTGTTGATTGTTTTGTTCTT+GGG - chr7_3:14102078-14102097 None:intergenic 25.0%
!!! ATTGTTGATTGTTTTGTTCT+TGG - chr7_3:14102079-14102098 None:intergenic 25.0%
!!! AATTTGTAGTGGATGAATTT+GGG - chr7_3:14102235-14102254 None:intergenic 25.0%
! AAATTGTAAGGAATTTGTAG+TGG - chr7_3:14102246-14102265 None:intergenic 25.0%
! ACAAATTCCTTACAATTTAG+TGG + chr7_3:14102248-14102267 Msa1093660:CDS 25.0%
! TTCAAATCCACTAAATTGTA+AGG - chr7_3:14102258-14102277 None:intergenic 25.0%
!! TTCATATTTTCCATTTCAGT+TGG - chr7_3:14102299-14102318 None:intergenic 25.0%
!!! TTACTTCTTCTACCTTTTTT+AGG - chr7_3:14102460-14102479 None:intergenic 25.0%
!!! ATTTTAAAAGCTAGCTAAGT+GGG - chr7_3:14102493-14102512 None:intergenic 25.0%
! CGCTATATTTACAAATTGAA+GGG - chr7_3:14102862-14102881 None:intergenic 25.0%
! ACGCTATATTTACAAATTGA+AGG - chr7_3:14102863-14102882 None:intergenic 25.0%
! TTAAAACATAATTAGTGGTG+TGG + chr7_3:14103023-14103042 Msa1093660:intron 25.0%
!! GTGGTAAAAAATACTTTTGA+CGG + chr7_3:14103045-14103064 Msa1093660:intron 25.0%
!! TAGGGAAATATATGTTGATT+CGG + chr7_3:14103424-14103443 Msa1093660:CDS 25.0%
! GGGACTTATAGTTAAAATTA+TGG + chr7_3:14103467-14103486 Msa1093660:CDS 25.0%
! AAATTATGGTCGAAATTCAA+AGG + chr7_3:14103481-14103500 Msa1093660:CDS 25.0%
! ATAGAGTCATAAAGAGATAT+TGG - chr7_3:14103589-14103608 None:intergenic 25.0%
!! TGGAGAATGCTTAATTATTT+TGG - chr7_3:14103650-14103669 None:intergenic 25.0%
! ATGTTAGTGGCAAAATTAAA+GGG - chr7_3:14103780-14103799 None:intergenic 25.0%
! AATGTTAGTGGCAAAATTAA+AGG - chr7_3:14103781-14103800 None:intergenic 25.0%
! AACAAAAAATGTTGTAGTGT+TGG - chr7_3:14103931-14103950 None:intergenic 25.0%
! GTTTTACCCCACTTTATATT+CGG + chr7_3:14100487-14100506 Msa1093660:intron 30.0%
TTTGCCGAATGTTTAAGAAT+TGG - chr7_3:14100548-14100567 None:intergenic 30.0%
TAGGATAGTTTCTCAATTAC+TGG - chr7_3:14100581-14100600 None:intergenic 30.0%
! ACACTCAACTTGAAATGTTT+TGG - chr7_3:14100763-14100782 None:intergenic 30.0%
AGCATTTGTATGTGAAATCT+GGG - chr7_3:14100883-14100902 None:intergenic 30.0%
AAGCATTTGTATGTGAAATC+TGG - chr7_3:14100884-14100903 None:intergenic 30.0%
! CTTGAGTTTTTACAGAAAGA+AGG - chr7_3:14100937-14100956 None:intergenic 30.0%
! CAAAGCTACTTTCAATTCAA+AGG - chr7_3:14100966-14100985 None:intergenic 30.0%
TTATATATTAACCCACTTGG+CGG + chr7_3:14101140-14101159 Msa1093660:intron 30.0%
TCATACTAACACATCGAAAT+TGG - chr7_3:14101230-14101249 None:intergenic 30.0%
CATTAGTTATGCATAAGGAA+AGG - chr7_3:14101331-14101350 None:intergenic 30.0%
AGATGCATTAGTTATGCATA+AGG - chr7_3:14101336-14101355 None:intergenic 30.0%
! GTTTTTCTTGTAAATAGGAC+CGG + chr7_3:14101581-14101600 Msa1093660:intron 30.0%
TGTACTTACTCATTTCCAAA+AGG + chr7_3:14101843-14101862 Msa1093660:intron 30.0%
AATTTCAAAAATAGGAAGGG+TGG - chr7_3:14101875-14101894 None:intergenic 30.0%
!!! CTTGAAATTTCCTTTTTTGC+AGG + chr7_3:14101959-14101978 Msa1093660:intron 30.0%
CGAATACAATTTAATTGCTG+AGG + chr7_3:14101989-14102008 Msa1093660:CDS 30.0%
TCCACATCTATAAGGAAATT+CGG - chr7_3:14102023-14102042 None:intergenic 30.0%
!! AGAAGAAAGTTTTGGTGAAA+AGG - chr7_3:14102171-14102190 None:intergenic 30.0%
! GATGAGTTAGAAGAAAGTTT+TGG - chr7_3:14102179-14102198 None:intergenic 30.0%
!! ATTTGTAGTGGATGAATTTG+GGG - chr7_3:14102234-14102253 None:intergenic 30.0%
!! GAATTTGTAGTGGATGAATT+TGG - chr7_3:14102236-14102255 None:intergenic 30.0%
TCTTGTTCCTAACCTAAAAA+AGG + chr7_3:14102445-14102464 Msa1093660:CDS 30.0%
!!! TCTTCTACCTTTTTTAGGTT+AGG - chr7_3:14102455-14102474 None:intergenic 30.0%
!! GATTTTAAAAGCTAGCTAAG+TGG - chr7_3:14102494-14102513 None:intergenic 30.0%
!!! TAAAAAGCGTTTGGAAGTTT+TGG + chr7_3:14103260-14103279 Msa1093660:CDS 30.0%
AACAAAAATAGAGTCACAAG+TGG + chr7_3:14103299-14103318 Msa1093660:CDS 30.0%
! AATAGTAGTGTCTTACCTTT+TGG + chr7_3:14103522-14103541 Msa1093660:CDS 30.0%
!!! GTTTGAAACATCTTGTTTTG+TGG - chr7_3:14103670-14103689 None:intergenic 30.0%
CAACACCAAAACAATCAAAA+GGG + chr7_3:14103740-14103759 Msa1093660:intron 30.0%
!! CTTTACCCTTTTGATTGTTT+TGG - chr7_3:14103748-14103767 None:intergenic 30.0%
AGGTTACAACATGAACATAA+AGG + chr7_3:14104137-14104156 Msa1093660:CDS 30.0%
! GGAGGAAATTTCAAGTGTTA+AGG - chr7_3:14100742-14100761 None:intergenic 35.0%
!! CTCAACTTGAAATGTTTTGG+AGG - chr7_3:14100760-14100779 None:intergenic 35.0%
AACATAGGAGCCTAAATATG+AGG - chr7_3:14101391-14101410 None:intergenic 35.0%
TTCTTATAAATAGGACCGGA+GGG - chr7_3:14101488-14101507 None:intergenic 35.0%
TTTCTTATAAATAGGACCGG+AGG - chr7_3:14101489-14101508 None:intergenic 35.0%
TCGTTCATTTCCTGCAAAAA+AGG - chr7_3:14101972-14101991 None:intergenic 35.0%
CCACATCTATAAGGAAATTC+GGG - chr7_3:14102022-14102041 None:intergenic 35.0%
! ATCAACAATGTTTGACTTCG+AGG + chr7_3:14102090-14102109 Msa1093660:CDS 35.0%
TCATGGTCATGATCATATCA+TGG + chr7_3:14102370-14102389 Msa1093660:CDS 35.0%
AAACATAATTAGTGGTGTGG+TGG + chr7_3:14103026-14103045 Msa1093660:intron 35.0%
!! GAAAGAGCTTAAAAAGCGTT+TGG + chr7_3:14103251-14103270 Msa1093660:CDS 35.0%
ATCACTATAAATGCCTGGTT+TGG - chr7_3:14103331-14103350 None:intergenic 35.0%
TTGTCATCACTATAAATGCC+TGG - chr7_3:14103336-14103355 None:intergenic 35.0%
GTAAACCAACAACACTATGA+AGG - chr7_3:14103380-14103399 None:intergenic 35.0%
!! TGTTGGTTTACCATTTCAAG+TGG + chr7_3:14103389-14103408 Msa1093660:CDS 35.0%
TCGATGATAGAATCTCCAAA+AGG - chr7_3:14103540-14103559 None:intergenic 35.0%
!!! CCTTTTGATTGTTTTGGTGT+TGG - chr7_3:14103742-14103761 None:intergenic 35.0%
CCAACACCAAAACAATCAAA+AGG + chr7_3:14103739-14103758 Msa1093660:intron 35.0%
CAAATCAGATAACCAGCTGT+TGG - chr7_3:14100289-14100308 None:intergenic 40.0%
CAACAGCTGGTTATCTGATT+TGG + chr7_3:14100287-14100306 Msa1093660:CDS 40.0%
!! ATGGTGTTGATTTGAGACCA+TGG + chr7_3:14101172-14101191 Msa1093660:intron 40.0%
AACCTAATACACTCACTCCA+TGG - chr7_3:14101192-14101211 None:intergenic 40.0%
CGAAACCTTGCCTCATATTT+AGG + chr7_3:14101378-14101397 Msa1093660:intron 40.0%
TTTCTTGTAAATAGGACCGG+AGG + chr7_3:14101584-14101603 Msa1093660:intron 40.0%
TTCTTGTAAATAGGACCGGA+GGG + chr7_3:14101585-14101604 Msa1093660:intron 40.0%
GCAACAAAGGACATGACTTA+CGG - chr7_3:14101704-14101723 None:intergenic 40.0%
TAGACGGAGAAATGCAACAA+AGG - chr7_3:14101717-14101736 None:intergenic 40.0%
TTTGTTGCATTTCTCCGTCT+AGG + chr7_3:14101716-14101735 Msa1093660:intron 40.0%
TTGGTTGGATTTGACCTAGA+CGG - chr7_3:14101733-14101752 None:intergenic 40.0%
CCATTATGAGCAAGTTTGGT+TGG - chr7_3:14101748-14101767 None:intergenic 40.0%
! CCAACCAAACTTGCTCATAA+TGG + chr7_3:14101745-14101764 Msa1093660:intron 40.0%
TTGGCCATTATGAGCAAGTT+TGG - chr7_3:14101752-14101771 None:intergenic 40.0%
CCCGAATTTCCTTATAGATG+TGG + chr7_3:14102019-14102038 Msa1093660:CDS 40.0%
GAAGCTCTTCCACATCTATA+AGG - chr7_3:14102031-14102050 None:intergenic 40.0%
!! TTTGGGGTGTTGTCAAAACA+TGG - chr7_3:14102218-14102237 None:intergenic 40.0%
! TTTTCTCGATGACTCTTCTG+AGG - chr7_3:14102336-14102355 None:intergenic 40.0%
CAGAAGAGTCATCGAGAAAA+AGG + chr7_3:14102336-14102355 Msa1093660:CDS 40.0%
AAAAGGTCTCGTGGTAATCA+TGG + chr7_3:14102353-14102372 Msa1093660:CDS 40.0%
AAGGTTCTCATCACATGAAG+AGG - chr7_3:14103361-14103380 None:intergenic 40.0%
GAGAACCTTCATAGTGTTGT+TGG + chr7_3:14103372-14103391 Msa1093660:CDS 40.0%
ACTCTTGCTTCCACTTGAAA+TGG - chr7_3:14103402-14103421 None:intergenic 40.0%
AAGTGGAAGCAAGAGTCTTA+GGG + chr7_3:14103406-14103425 Msa1093660:CDS 40.0%
AATCCGTTGCCTAAACGTTT+AGG + chr7_3:14103987-14104006 Msa1093660:intron 40.0%
CAACCTAAACGTTTAGGCAA+CGG - chr7_3:14103993-14104012 None:intergenic 40.0%
!! TTGCCTAAACGTTTAGGTTG+CGG + chr7_3:14103993-14104012 Msa1093660:intron 40.0%
AAACCGCAACCTAAACGTTT+AGG - chr7_3:14103999-14104018 None:intergenic 40.0%
!!! ACGTTTAGGTTGCGGTTTTT+AGG + chr7_3:14104001-14104020 Msa1093660:intron 40.0%
ACTTGTGAAGAACATACGCA+TGG + chr7_3:14104161-14104180 Msa1093660:CDS 40.0%
AATCGACATCAACCAACAGC+TGG + chr7_3:14100274-14100293 Msa1093660:CDS 45.0%
AGTATGAGTACCCGTTTCCA+CGG + chr7_3:14100379-14100398 Msa1093660:intron 45.0%
! TTTTAACGTCCCGTGGAAAC+GGG - chr7_3:14100392-14100411 None:intergenic 45.0%
!! GTTTTAACGTCCCGTGGAAA+CGG - chr7_3:14100393-14100412 None:intergenic 45.0%
!! AGCAAAGTTTTAACGTCCCG+TGG - chr7_3:14100399-14100418 None:intergenic 45.0%
GACCATGGAGTGAGTGTATT+AGG + chr7_3:14101187-14101206 Msa1093660:intron 45.0%
ACACATCGAAATTGGCACTG+AGG - chr7_3:14101222-14101241 None:intergenic 45.0%
AGGAGCCTAAATATGAGGCA+AGG - chr7_3:14101386-14101405 None:intergenic 45.0%
! GAAGGGTGGATCATACCTTT+TGG - chr7_3:14101861-14101880 None:intergenic 45.0%
ACCAGTGTCTCCAACTGAAA+TGG + chr7_3:14102286-14102305 Msa1093660:CDS 45.0%
TCCATTTCAGTTGGAGACAC+TGG - chr7_3:14102290-14102309 None:intergenic 45.0%
TCATCGAGAAAAAGGTCTCG+TGG + chr7_3:14102344-14102363 Msa1093660:CDS 45.0%
CAAGTGGAAGCAAGAGTCTT+AGG + chr7_3:14103405-14103424 Msa1093660:CDS 45.0%
!! GCAAAATTAAAGGGTGCTGG+TGG - chr7_3:14103771-14103790 None:intergenic 45.0%
! GTGGCAAAATTAAAGGGTGC+TGG - chr7_3:14103774-14103793 None:intergenic 45.0%
CGACGCAAAATCGTGGTTAA+AGG + chr7_3:14103959-14103978 Msa1093660:intron 45.0%
!!! TTACAATTTTTTTAATATAT+TGG - chr7_3:14101771-14101790 None:intergenic 5.0%
!!! CATTTATATAATTATTTTAA+AGG + chr7_3:14102594-14102613 Msa1093660:intron 5.0%
!! TATTTATTCAAATAATTTAA+TGG + chr7_3:14102987-14103006 Msa1093660:intron 5.0%
GTATGAGTACCCGTTTCCAC+GGG + chr7_3:14100380-14100399 Msa1093660:intron 50.0%
ATCAGACTAAGCCGCCAAGT+GGG - chr7_3:14101154-14101173 None:intergenic 50.0%
GTTGCTGAGAGTTGTGTGAG+TGG - chr7_3:14102117-14102136 None:intergenic 50.0%
CAAGTGGTTGTGACCAAACC+AGG + chr7_3:14103315-14103334 Msa1093660:CDS 50.0%
! GATCCAATGCCAAGAGCACA+GGG + chr7_3:14103446-14103465 Msa1093660:CDS 50.0%
! ATCCAATGCCAAGAGCACAG+GGG + chr7_3:14103447-14103466 Msa1093660:CDS 50.0%
CTATAAGTCCCCTGTGCTCT+TGG - chr7_3:14103458-14103477 None:intergenic 50.0%
GGTCTCTACCTGAGCAATGA+TGG - chr7_3:14103568-14103587 None:intergenic 50.0%
TAGGCTACGACGCAAAATCG+TGG + chr7_3:14103952-14103971 Msa1093660:intron 50.0%
!! TAGGTTGCGGTTTTTAGGCG+TGG + chr7_3:14104006-14104025 Msa1093660:intron 50.0%
CATCAGACTAAGCCGCCAAG+TGG - chr7_3:14101155-14101174 None:intergenic 55.0%
CACTTGGCGGCTTAGTCTGA+TGG + chr7_3:14101153-14101172 Msa1093660:intron 55.0%
! GGATCCAATGCCAAGAGCAC+AGG + chr7_3:14103445-14103464 Msa1093660:CDS 55.0%
CGACGTGACCATCATTGCTC+AGG + chr7_3:14103557-14103576 Msa1093660:CDS 55.0%
GTCCCCTGTGCTCTTGGCAT+TGG - chr7_3:14103452-14103471 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 14100243 14104209 14100243 ID=Msa1093660;Name=Msa1093660
chr7_3 mRNA 14100243 14104209 14100243 ID=Msa1093660-mRNA-1;Parent=Msa1093660;Name=Msa1093660-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.75|1|1|4|0|333
chr7_3 exon 14100243 14100308 14100243 ID=Msa1093660-mRNA-1:exon:3289;Parent=Msa1093660-mRNA-1
chr7_3 exon 14101981 14102466 14101981 ID=Msa1093660-mRNA-1:exon:3290;Parent=Msa1093660-mRNA-1
chr7_3 exon 14103210 14103578 14103210 ID=Msa1093660-mRNA-1:exon:3291;Parent=Msa1093660-mRNA-1
chr7_3 exon 14104129 14104209 14104129 ID=Msa1093660-mRNA-1:exon:3292;Parent=Msa1093660-mRNA-1
chr7_3 CDS 14100243 14100308 14100243 ID=Msa1093660-mRNA-1:cds;Parent=Msa1093660-mRNA-1
chr7_3 CDS 14101981 14102466 14101981 ID=Msa1093660-mRNA-1:cds;Parent=Msa1093660-mRNA-1
chr7_3 CDS 14103210 14103578 14103210 ID=Msa1093660-mRNA-1:cds;Parent=Msa1093660-mRNA-1
chr7_3 CDS 14104129 14104209 14104129 ID=Msa1093660-mRNA-1:cds;Parent=Msa1093660-mRNA-1
Gene Sequence

>Msa1093660

ATGGAAGAAATCAACAACACAGCATTGAACGAATCGACATCAACCAACAGCTGGTTATCTGATTTGGAAATGAACGAATACAATTTAATTGCTGAGGAATGCAACCCGAATTTCCTTATAGATGTGGAAGAGCTTCTTTCACATGACATAGCTAATGTCTCCCAAGAACAAAACAATCAACAATGTTTGACTTCGAGGTCCACTCACACAACTCTCAGCAACACAATTGATCATAGCAACAAAATCAATGAAACCTTTTCACCAAAACTTTCTTCTAACTCATCTTTTCATTTTCAAATTCCATGTTTTGACAACACCCCAAATTCATCCACTACAAATTCCTTACAATTTAGTGGATTTGAAAAATATGAACCAGTGTCTCCAACTGAAATGGAAAATATGAATCACTCAACTCAAACCTCAGAAGAGTCATCGAGAAAAAGGTCTCGTGGTAATCATGGTCATGATCATATCATGGCTGAGAGAAAGAGAAGAGAGAAACTCACACAGAACTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTAAAAAAGGTGGACAAATATTCTGTATTAGTTGAAGCTATCAAATACATGAAAGAGCTTAAAAAGCGTTTGGAAGTTTTGGAAGAACAAAATGAGAAAACAAAAATAGAGTCACAAGTGGTTGTGACCAAACCAGGCATTTATAGTGATGACAATTCCTCTTCATGTGATGAGAACCTTCATAGTGTTGTTGGTTTACCATTTCAAGTGGAAGCAAGAGTCTTAGGGAAATATATGTTGATTCGGATCCAATGCCAAGAGCACAGGGGACTTATAGTTAAAATTATGGTCGAAATTCAAAGGTTTCAACTATTTGTTGTTAATAGTAGTGTCTTACCTTTTGGAGATTCTATCATCGACGTGACCATCATTGCTCAGATGGATGAAGGTTACAACATGAACATAAAGGAACTTGTGAAGAACATACGCATGGCAGCATTGAAGTTTATGTCATCATAA

Protein sequence

>Msa1093660

MEEINNTALNESTSTNSWLSDLEMNEYNLIAEECNPNFLIDVEELLSHDIANVSQEQNNQQCLTSRSTHTTLSNTIDHSNKINETFSPKLSSNSSFHFQIPCFDNTPNSSTTNSLQFSGFEKYEPVSPTEMENMNHSTQTSEESSRKRSRGNHGHDHIMAERKRREKLTQNFIALAALVPNLKKVDKYSVLVEAIKYMKELKKRLEVLEEQNEKTKIESQVVVTKPGIYSDDNSSSCDENLHSVVGLPFQVEARVLGKYMLIRIQCQEHRGLIVKIMVEIQRFQLFVVNSSVLPFGDSIIDVTIIAQMDEGYNMNIKELVKNIRMAALKFMSS*