Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1093660 | XP_013442252.2 | 78.979 | 333 | 25 | 2 | 1 | 333 | 1 | 288 | 0.0 | 526 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1093660 | sp|Q9T072|BH025_ARATH | 42.927 | 205 | 102 | 5 | 139 | 331 | 127 | 328 | 2.73e-44 | 157 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1093660 | A0A072TFX4 | 78.710 | 310 | 21 | 2 | 24 | 333 | 1 | 265 | 5.07e-173 | 490 |
Gene ID | Type | Classification |
---|---|---|
Msa1093660 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1093660 | MtrunA17_Chr6g0468491 | 71.827 | 323 | 69 | 5 | 24 | 333 | 1 | 314 | 8.24e-159 | 446 |
Msa1093660 | MtrunA17_Chr7g0225901 | 77.622 | 286 | 19 | 2 | 24 | 309 | 1 | 241 | 2.83e-158 | 442 |
Msa1093660 | MtrunA17_Chr2g0307131 | 65.651 | 361 | 89 | 7 | 1 | 332 | 1 | 355 | 4.63e-152 | 431 |
Msa1093660 | MtrunA17_Chr2g0307141 | 65.840 | 363 | 91 | 7 | 1 | 333 | 1 | 360 | 1.02e-143 | 410 |
Msa1093660 | MtrunA17_Chr4g0033391 | 64.201 | 338 | 95 | 8 | 1 | 331 | 1 | 319 | 3.78e-136 | 389 |
Msa1093660 | MtrunA17_Chr4g0033291 | 64.058 | 345 | 96 | 8 | 1 | 333 | 1 | 329 | 4.71e-136 | 389 |
Msa1093660 | MtrunA17_Chr4g0033281 | 61.143 | 350 | 93 | 8 | 1 | 332 | 1 | 325 | 3.37e-124 | 359 |
Msa1093660 | MtrunA17_Chr6g0468461 | 62.388 | 335 | 75 | 9 | 1 | 308 | 1 | 311 | 6.39e-122 | 354 |
Msa1093660 | MtrunA17_Chr4g0054581 | 52.320 | 388 | 121 | 10 | 1 | 333 | 1 | 379 | 3.47e-113 | 333 |
Msa1093660 | MtrunA17_Chr4g0054621 | 46.175 | 366 | 140 | 14 | 1 | 333 | 1 | 342 | 4.40e-81 | 250 |
Msa1093660 | MtrunA17_Chr5g0400621 | 43.769 | 329 | 156 | 10 | 18 | 332 | 20 | 333 | 2.16e-63 | 204 |
Msa1093660 | MtrunA17_Chr5g0400661 | 36.735 | 343 | 174 | 10 | 14 | 328 | 7 | 334 | 5.73e-54 | 180 |
Msa1093660 | MtrunA17_Chr2g0280161 | 46.667 | 210 | 94 | 4 | 133 | 331 | 151 | 353 | 2.56e-52 | 176 |
Msa1093660 | MtrunA17_Chr5g0400641 | 54.268 | 164 | 66 | 4 | 159 | 317 | 1 | 160 | 2.72e-49 | 162 |
Msa1093660 | MtrunA17_Chr4g0054561 | 38.971 | 272 | 151 | 6 | 64 | 323 | 52 | 320 | 9.13e-48 | 163 |
Msa1093660 | MtrunA17_Chr4g0002801 | 44.144 | 222 | 103 | 8 | 125 | 329 | 114 | 331 | 2.23e-47 | 162 |
Msa1093660 | MtrunA17_Chr4g0054551 | 36.397 | 272 | 158 | 5 | 64 | 323 | 52 | 320 | 1.56e-45 | 157 |
Msa1093660 | MtrunA17_Chr4g0049331 | 44.211 | 190 | 94 | 3 | 148 | 331 | 127 | 310 | 9.62e-44 | 152 |
Msa1093660 | MtrunA17_Chr4g0002781 | 39.732 | 224 | 114 | 6 | 125 | 329 | 129 | 350 | 3.88e-43 | 152 |
Msa1093660 | MtrunA17_Chr8g0336681 | 45.251 | 179 | 87 | 4 | 155 | 324 | 155 | 331 | 1.86e-41 | 147 |
Msa1093660 | MtrunA17_Chr5g0400671 | 45.198 | 177 | 92 | 3 | 153 | 328 | 151 | 323 | 1.00e-39 | 142 |
Msa1093660 | MtrunA17_Chr7g0249811 | 39.806 | 206 | 115 | 2 | 124 | 329 | 133 | 329 | 2.58e-39 | 141 |
Msa1093660 | MtrunA17_Chr4g0054571 | 35.780 | 327 | 175 | 11 | 14 | 330 | 30 | 331 | 1.34e-38 | 139 |
Msa1093660 | MtrunA17_Chr2g0333621 | 40.609 | 197 | 112 | 3 | 139 | 332 | 121 | 315 | 1.75e-38 | 139 |
Msa1093660 | MtrunA17_Chr2g0333641 | 41.176 | 187 | 104 | 4 | 139 | 323 | 120 | 302 | 1.81e-38 | 139 |
Msa1093660 | MtrunA17_Chr2g0333541 | 38.813 | 219 | 125 | 3 | 112 | 327 | 55 | 267 | 9.31e-36 | 130 |
Msa1093660 | MtrunA17_Chr2g0333611 | 38.068 | 176 | 103 | 2 | 157 | 330 | 46 | 217 | 3.56e-34 | 125 |
Msa1093660 | MtrunA17_Chr4g0002851 | 35.484 | 155 | 68 | 3 | 179 | 326 | 65 | 194 | 8.67e-24 | 96.7 |
Msa1093660 | MtrunA17_Chr7g0233441 | 37.584 | 149 | 81 | 4 | 179 | 326 | 57 | 194 | 2.35e-23 | 95.5 |
Msa1093660 | MtrunA17_Chr4g0002831 | 33.333 | 168 | 88 | 4 | 166 | 326 | 52 | 202 | 1.61e-21 | 90.9 |
Msa1093660 | MtrunA17_Chr8g0366751 | 32.973 | 185 | 104 | 5 | 135 | 300 | 434 | 617 | 1.20e-17 | 84.0 |
Msa1093660 | MtrunA17_Chr8g0346151 | 33.613 | 119 | 65 | 3 | 156 | 265 | 279 | 392 | 3.59e-15 | 76.3 |
Msa1093660 | MtrunA17_Chr5g0411341 | 31.073 | 177 | 102 | 5 | 142 | 300 | 474 | 648 | 3.73e-15 | 76.3 |
Msa1093660 | MtrunA17_Chr1g0185621 | 28.834 | 163 | 98 | 4 | 142 | 289 | 457 | 616 | 6.74e-15 | 75.5 |
Msa1093660 | MtrunA17_Chr8g0346161 | 29.167 | 168 | 92 | 5 | 138 | 285 | 263 | 423 | 2.03e-14 | 73.9 |
Msa1093660 | MtrunA17_Chr7g0275821 | 31.034 | 145 | 90 | 3 | 156 | 299 | 252 | 387 | 7.02e-14 | 72.0 |
Msa1093660 | MtrunA17_Chr3g0131691 | 26.316 | 209 | 136 | 5 | 135 | 330 | 277 | 480 | 1.90e-13 | 70.9 |
Msa1093660 | MtrunA17_Chr8g0386921 | 42.466 | 73 | 42 | 0 | 148 | 220 | 398 | 470 | 7.98e-13 | 69.3 |
Msa1093660 | MtrunA17_Chr7g0260841 | 29.000 | 200 | 111 | 8 | 79 | 247 | 252 | 451 | 1.14e-12 | 68.6 |
Msa1093660 | MtrunA17_Chr1g0211081 | 29.412 | 187 | 101 | 7 | 137 | 292 | 295 | 481 | 1.19e-11 | 65.5 |
Msa1093660 | MtrunA17_Chr8g0365711 | 26.923 | 156 | 103 | 4 | 158 | 305 | 246 | 398 | 1.20e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1093660 | AT4G37850.2 | 42.927 | 205 | 102 | 5 | 139 | 331 | 127 | 328 | 2.77e-45 | 157 |
Msa1093660 | AT4G37850.1 | 42.927 | 205 | 102 | 5 | 139 | 331 | 127 | 328 | 2.77e-45 | 157 |
Msa1093660 | AT2G22760.1 | 43.229 | 192 | 96 | 6 | 147 | 326 | 103 | 293 | 3.95e-45 | 156 |
Msa1093660 | AT2G22750.2 | 44.670 | 197 | 100 | 4 | 140 | 330 | 111 | 304 | 6.70e-39 | 140 |
Msa1093660 | AT2G22750.3 | 44.670 | 197 | 100 | 4 | 140 | 330 | 139 | 332 | 7.08e-39 | 140 |
Msa1093660 | AT2G22750.5 | 44.670 | 197 | 100 | 4 | 140 | 330 | 135 | 328 | 8.61e-39 | 140 |
Msa1093660 | AT2G22760.2 | 42.197 | 173 | 88 | 5 | 147 | 308 | 103 | 274 | 1.78e-37 | 135 |
Msa1093660 | AT2G22750.1 | 44.670 | 197 | 99 | 5 | 140 | 330 | 111 | 303 | 2.09e-37 | 136 |
Msa1093660 | AT2G22750.4 | 44.670 | 197 | 99 | 5 | 140 | 330 | 139 | 331 | 2.30e-37 | 136 |
Msa1093660 | AT2G22770.1 | 38.009 | 221 | 109 | 5 | 133 | 326 | 98 | 317 | 1.47e-35 | 131 |
Msa1093660 | AT4G17880.1 | 34.731 | 167 | 98 | 4 | 142 | 300 | 397 | 560 | 2.51e-17 | 83.2 |
Msa1093660 | AT1G32640.1 | 32.394 | 142 | 87 | 2 | 156 | 292 | 452 | 589 | 1.88e-16 | 80.9 |
Msa1093660 | AT5G46760.1 | 29.730 | 185 | 113 | 7 | 142 | 313 | 396 | 576 | 3.95e-15 | 76.6 |
Msa1093660 | AT1G63650.3 | 28.402 | 169 | 98 | 5 | 156 | 304 | 405 | 570 | 8.24e-14 | 72.8 |
Msa1093660 | AT1G63650.1 | 28.402 | 169 | 98 | 5 | 156 | 304 | 405 | 570 | 8.24e-14 | 72.8 |
Msa1093660 | AT1G63650.2 | 28.402 | 169 | 98 | 5 | 156 | 304 | 405 | 570 | 8.24e-14 | 72.8 |
Msa1093660 | AT5G41315.2 | 27.586 | 174 | 98 | 4 | 156 | 304 | 449 | 619 | 8.51e-13 | 69.7 |
Msa1093660 | AT5G41315.1 | 27.586 | 174 | 98 | 4 | 156 | 304 | 441 | 611 | 8.85e-13 | 69.7 |
Msa1093660 | AT5G41315.3 | 27.586 | 174 | 98 | 4 | 156 | 304 | 446 | 616 | 9.21e-13 | 69.7 |
Msa1093660 | AT4G16430.1 | 42.683 | 82 | 42 | 1 | 140 | 216 | 299 | 380 | 1.04e-12 | 68.9 |
Msa1093660 | AT2G46510.1 | 44.304 | 79 | 39 | 2 | 142 | 215 | 376 | 454 | 1.05e-12 | 69.3 |
Msa1093660 | AT1G01260.1 | 34.821 | 112 | 63 | 2 | 146 | 250 | 416 | 524 | 1.16e-12 | 69.3 |
Msa1093660 | AT1G01260.2 | 34.821 | 112 | 63 | 2 | 146 | 250 | 416 | 524 | 1.16e-12 | 69.3 |
Msa1093660 | AT1G01260.3 | 34.821 | 112 | 63 | 2 | 146 | 250 | 416 | 524 | 1.16e-12 | 69.3 |
Msa1093660 | AT3G26744.1 | 29.091 | 165 | 107 | 2 | 157 | 311 | 308 | 472 | 1.63e-11 | 65.5 |
Msa1093660 | AT3G26744.4 | 29.091 | 165 | 107 | 2 | 157 | 311 | 308 | 472 | 1.63e-11 | 65.5 |
Msa1093660 | AT3G26744.2 | 29.091 | 165 | 107 | 2 | 157 | 311 | 308 | 472 | 1.63e-11 | 65.5 |
Msa1093660 | AT1G12860.1 | 28.902 | 173 | 116 | 4 | 157 | 323 | 268 | 439 | 5.88e-11 | 63.5 |
Find 47 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAATTTGTAGTGGATGAATT+TGG | 0.179475 | 7_3:-14102233 | None:intergenic |
CAAGTGGAAGCAAGAGTCTT+AGG | 0.227099 | 7_3:+14103405 | Msa1093660:CDS |
AATAGTAGTGTCTTACCTTT+TGG | 0.280739 | 7_3:+14103522 | Msa1093660:CDS |
CAACAGCTGGTTATCTGATT+TGG | 0.283101 | 7_3:+14100287 | Msa1093660:CDS |
AATTTGTAGTGGATGAATTT+GGG | 0.291366 | 7_3:-14102232 | None:intergenic |
TCCACATCTATAAGGAAATT+CGG | 0.302534 | 7_3:-14102020 | None:intergenic |
ACAAATTCCTTACAATTTAG+TGG | 0.309622 | 7_3:+14102248 | Msa1093660:CDS |
GATGAGTTAGAAGAAAGTTT+TGG | 0.345146 | 7_3:-14102176 | None:intergenic |
CAGAAGAGTCATCGAGAAAA+AGG | 0.350658 | 7_3:+14102336 | Msa1093660:CDS |
TTCAAATCCACTAAATTGTA+AGG | 0.351709 | 7_3:-14102255 | None:intergenic |
GGGACTTATAGTTAAAATTA+TGG | 0.357813 | 7_3:+14103467 | Msa1093660:CDS |
GAAGCTCTTCCACATCTATA+AGG | 0.379411 | 7_3:-14102028 | None:intergenic |
ACTCTTGCTTCCACTTGAAA+TGG | 0.394913 | 7_3:-14103399 | None:intergenic |
GTCCCCTGTGCTCTTGGCAT+TGG | 0.400312 | 7_3:-14103449 | None:intergenic |
CCACATCTATAAGGAAATTC+GGG | 0.402643 | 7_3:-14102019 | None:intergenic |
CTATAAGTCCCCTGTGCTCT+TGG | 0.402896 | 7_3:-14103455 | None:intergenic |
ATCAACAATGTTTGACTTCG+AGG | 0.419284 | 7_3:+14102090 | Msa1093660:CDS |
ACCAGTGTCTCCAACTGAAA+TGG | 0.420736 | 7_3:+14102286 | Msa1093660:CDS |
TAGGGAAATATATGTTGATT+CGG | 0.438258 | 7_3:+14103424 | Msa1093660:CDS |
ATCACTATAAATGCCTGGTT+TGG | 0.451938 | 7_3:-14103328 | None:intergenic |
AAGTGGAAGCAAGAGTCTTA+GGG | 0.455524 | 7_3:+14103406 | Msa1093660:CDS |
GAGAACCTTCATAGTGTTGT+TGG | 0.457272 | 7_3:+14103372 | Msa1093660:CDS |
TCCATTTCAGTTGGAGACAC+TGG | 0.482760 | 7_3:-14102287 | None:intergenic |
GGATCCAATGCCAAGAGCAC+AGG | 0.490309 | 7_3:+14103445 | Msa1093660:CDS |
GGTCTCTACCTGAGCAATGA+TGG | 0.493468 | 7_3:-14103565 | None:intergenic |
AAAAGGTCTCGTGGTAATCA+TGG | 0.510954 | 7_3:+14102353 | Msa1093660:CDS |
CAAGTGGTTGTGACCAAACC+AGG | 0.515887 | 7_3:+14103315 | Msa1093660:CDS |
AGGTTACAACATGAACATAA+AGG | 0.516117 | 7_3:+14104137 | Msa1093660:CDS |
AAATTATGGTCGAAATTCAA+AGG | 0.523147 | 7_3:+14103481 | Msa1093660:CDS |
CGACGTGACCATCATTGCTC+AGG | 0.526856 | 7_3:+14103557 | Msa1093660:CDS |
TTGTCATCACTATAAATGCC+TGG | 0.527391 | 7_3:-14103333 | None:intergenic |
CCCGAATTTCCTTATAGATG+TGG | 0.531562 | 7_3:+14102019 | Msa1093660:CDS |
CGAATACAATTTAATTGCTG+AGG | 0.543999 | 7_3:+14101989 | Msa1093660:CDS |
TCATGGTCATGATCATATCA+TGG | 0.552733 | 7_3:+14102370 | Msa1093660:CDS |
GTAAACCAACAACACTATGA+AGG | 0.554409 | 7_3:-14103377 | None:intergenic |
CAAATCAGATAACCAGCTGT+TGG | 0.564229 | 7_3:-14100286 | None:intergenic |
AAGGTTCTCATCACATGAAG+AGG | 0.579692 | 7_3:-14103358 | None:intergenic |
GATCCAATGCCAAGAGCACA+GGG | 0.583908 | 7_3:+14103446 | Msa1093660:CDS |
TTTGGGGTGTTGTCAAAACA+TGG | 0.585137 | 7_3:-14102215 | None:intergenic |
TCGATGATAGAATCTCCAAA+AGG | 0.598134 | 7_3:-14103537 | None:intergenic |
AATCGACATCAACCAACAGC+TGG | 0.599243 | 7_3:+14100274 | Msa1093660:CDS |
TGTTGGTTTACCATTTCAAG+TGG | 0.603001 | 7_3:+14103389 | Msa1093660:CDS |
GTTGCTGAGAGTTGTGTGAG+TGG | 0.604875 | 7_3:-14102114 | None:intergenic |
AAATTGTAAGGAATTTGTAG+TGG | 0.612033 | 7_3:-14102243 | None:intergenic |
ATTTGTAGTGGATGAATTTG+GGG | 0.649171 | 7_3:-14102231 | None:intergenic |
ACTTGTGAAGAACATACGCA+TGG | 0.680721 | 7_3:+14104161 | Msa1093660:CDS |
ATCCAATGCCAAGAGCACAG+GGG | 0.782046 | 7_3:+14103447 | Msa1093660:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTTGAAAATAATTTAAATTA+GGG | + | chr7_3:14100456-14100475 | Msa1093660:intron | 10.0% |
!!! | AAAATTTAAAACATAATTAG+TGG | + | chr7_3:14103018-14103037 | Msa1093660:intron | 10.0% |
!!! | TAATACAATTTTTTAGTTTT+TGG | + | chr7_3:14103805-14103824 | Msa1093660:intron | 10.0% |
!!! | AATCTTAATTATTTTATAGA+TGG | + | chr7_3:14104110-14104129 | Msa1093660:intron | 10.0% |
!! | GCTTGAAAATAATTTAAATT+AGG | + | chr7_3:14100455-14100474 | Msa1093660:intron | 15.0% |
!! | AATATAAACATAGTACAAAA+TGG | - | chr7_3:14100807-14100826 | None:intergenic | 15.0% |
!!! | TTTTTTTTAAGAAGCTAAAA+TGG | + | chr7_3:14100835-14100854 | Msa1093660:intron | 15.0% |
!! | TCCTATTTATAAGAAAAAAT+TGG | + | chr7_3:14101493-14101512 | Msa1093660:intron | 15.0% |
!! | CCTATTTATAAGAAAAAATT+GGG | + | chr7_3:14101494-14101513 | Msa1093660:intron | 15.0% |
!! | ATCAAAAGATATTCAATATT+TGG | - | chr7_3:14102691-14102710 | None:intergenic | 15.0% |
!! | AAAAATAATCGTCAATTTAT+TGG | + | chr7_3:14102813-14102832 | Msa1093660:intron | 15.0% |
!! | AGTAAATGAATAAAGAAATA+TGG | + | chr7_3:14102893-14102912 | Msa1093660:intron | 15.0% |
!! | ATACAAAAATACTATAATCT+TGG | + | chr7_3:14103133-14103152 | Msa1093660:intron | 15.0% |
!! | TTGTATTAAAAAAATGTTAG+TGG | - | chr7_3:14103793-14103812 | None:intergenic | 15.0% |
!! | TATAATAATAGTAATAGTGA+TGG | - | chr7_3:14103833-14103852 | None:intergenic | 15.0% |
!! | ATAATTGTTATCATCTTAAA+AGG | + | chr7_3:14103882-14103901 | Msa1093660:intron | 15.0% |
!! | CATTTCTGAATTTAGAAAAT+AGG | - | chr7_3:14100342-14100361 | None:intergenic | 20.0% |
!!! | CTATTTTCTAAATTCAGAAA+TGG | + | chr7_3:14100340-14100359 | Msa1093660:intron | 20.0% |
!!! | TTATCCATTTTGTTTGTAAT+AGG | - | chr7_3:14100600-14100619 | None:intergenic | 20.0% |
!! | GTGAATTTAGAAAATAGAAA+GGG | - | chr7_3:14100696-14100715 | None:intergenic | 20.0% |
!! | TGTGAATTTAGAAAATAGAA+AGG | - | chr7_3:14100697-14100716 | None:intergenic | 20.0% |
!!! | CTATTTTCTAAATTCACAAA+TGG | + | chr7_3:14100699-14100718 | Msa1093660:intron | 20.0% |
!! | GTTAATGTTATGAAATGTTT+AGG | - | chr7_3:14101005-14101024 | None:intergenic | 20.0% |
!!! | TTGCTGAAACATTATATTTT+AGG | - | chr7_3:14101051-14101070 | None:intergenic | 20.0% |
!! | TAATCATTTGATACATCATT+GGG | - | chr7_3:14101123-14101142 | None:intergenic | 20.0% |
!! | ATAATCATTTGATACATCAT+TGG | - | chr7_3:14101124-14101143 | None:intergenic | 20.0% |
!!! | TGTTAGTATGACTTTTAAAA+AGG | + | chr7_3:14101239-14101258 | Msa1093660:intron | 20.0% |
!! | TATGAATATTTCGCATAATT+AGG | + | chr7_3:14101305-14101324 | Msa1093660:intron | 20.0% |
!!! | TCCCTTAATATGATTTTTTT+TGG | + | chr7_3:14101355-14101374 | Msa1093660:intron | 20.0% |
!! | GCCAAAAAAAATCATATTAA+GGG | - | chr7_3:14101359-14101378 | None:intergenic | 20.0% |
!!! | ATTGTAGAAGTATTAAACAT+AGG | - | chr7_3:14101406-14101425 | None:intergenic | 20.0% |
!!! | TTTTTTCTTATAAATAGGAC+CGG | - | chr7_3:14101492-14101511 | None:intergenic | 20.0% |
!!! | CCCAATTTTTTCTTATAAAT+AGG | - | chr7_3:14101497-14101516 | None:intergenic | 20.0% |
!! | CATTTGTGAATTTCAAAAAT+AGG | - | chr7_3:14101883-14101902 | None:intergenic | 20.0% |
!!! | CTATTTTTGAAATTCACAAA+TGG | + | chr7_3:14101881-14101900 | Msa1093660:intron | 20.0% |
!!! | ATTAAATTTTGTTCGATGAA+AGG | - | chr7_3:14102640-14102659 | None:intergenic | 20.0% |
!! | AATGAATAAAGAAATATGGT+TGG | + | chr7_3:14102897-14102916 | Msa1093660:intron | 20.0% |
!! | ATAATCTTGGTTACATTATT+TGG | + | chr7_3:14103146-14103165 | Msa1093660:intron | 20.0% |
!! | CGATATTGTAAAAATATGTT+AGG | + | chr7_3:14103188-14103207 | Msa1093660:intron | 20.0% |
!! | TATTGTAAAAATATGTTAGG+TGG | + | chr7_3:14103191-14103210 | Msa1093660:intron | 20.0% |
!!! | TAAAAGGAGTATTTTATTCT+AGG | + | chr7_3:14103898-14103917 | Msa1093660:intron | 20.0% |
!!! | ACTACAACATTTTTTGTTTT+AGG | + | chr7_3:14103933-14103952 | Msa1093660:intron | 20.0% |
!!! | AATTTGTTGTCTTTTGATTT+CGG | + | chr7_3:14104049-14104068 | Msa1093660:intron | 20.0% |
!!! | ATTATTTTATAGATGGATGA+AGG | + | chr7_3:14104117-14104136 | Msa1093660:intron | 20.0% |
!! | GATTTGGTAAGAAAATCAAA+AGG | + | chr7_3:14100303-14100322 | Msa1093660:intron | 25.0% |
! | CTGAATTTAGAAAATAGGAA+GGG | - | chr7_3:14100337-14100356 | None:intergenic | 25.0% |
! | TCTGAATTTAGAAAATAGGA+AGG | - | chr7_3:14100338-14100357 | None:intergenic | 25.0% |
! | ATATTTCCGAATATAAAGTG+GGG | - | chr7_3:14100496-14100515 | None:intergenic | 25.0% |
! | CATATTTCCGAATATAAAGT+GGG | - | chr7_3:14100497-14100516 | None:intergenic | 25.0% |
! | ACATATTTCCGAATATAAAG+TGG | - | chr7_3:14100498-14100517 | None:intergenic | 25.0% |
! | GAATCCAATTCTTAAACATT+CGG | + | chr7_3:14100541-14100560 | Msa1093660:intron | 25.0% |
! | CTATCCTATTACAAACAAAA+TGG | + | chr7_3:14100593-14100612 | Msa1093660:intron | 25.0% |
!! | TTTTCTAAATTCACAAATGG+TGG | + | chr7_3:14100702-14100721 | Msa1093660:intron | 25.0% |
! | ATGTTATGAAATGTTTAGGT+GGG | - | chr7_3:14101001-14101020 | None:intergenic | 25.0% |
! | AATGTTATGAAATGTTTAGG+TGG | - | chr7_3:14101002-14101021 | None:intergenic | 25.0% |
! | TGATTATATATTAACCCACT+TGG | + | chr7_3:14101137-14101156 | Msa1093660:intron | 25.0% |
! | AAAGGAAATTGATTGTATAC+TGG | + | chr7_3:14101257-14101276 | Msa1093660:intron | 25.0% |
! | CGCCAAAAAAAATCATATTA+AGG | - | chr7_3:14101360-14101379 | None:intergenic | 25.0% |
! | ATATAAATTAATACTCCCTC+CGG | + | chr7_3:14101470-14101489 | Msa1093660:intron | 25.0% |
!! | CTCAAGTTTTTCTTGTAAAT+AGG | + | chr7_3:14101576-14101595 | Msa1093660:intron | 25.0% |
! | ATATTAAATTATACTCCCTC+CGG | - | chr7_3:14101603-14101622 | None:intergenic | 25.0% |
!!! | CTTACGGTTTTTAGAATATA+AGG | - | chr7_3:14101688-14101707 | None:intergenic | 25.0% |
! | GTGAATTTCAAAAATAGGAA+GGG | - | chr7_3:14101878-14101897 | None:intergenic | 25.0% |
! | TGTGAATTTCAAAAATAGGA+AGG | - | chr7_3:14101879-14101898 | None:intergenic | 25.0% |
!!! | TTGTTGATTGTTTTGTTCTT+GGG | - | chr7_3:14102078-14102097 | None:intergenic | 25.0% |
!!! | ATTGTTGATTGTTTTGTTCT+TGG | - | chr7_3:14102079-14102098 | None:intergenic | 25.0% |
!!! | AATTTGTAGTGGATGAATTT+GGG | - | chr7_3:14102235-14102254 | None:intergenic | 25.0% |
! | AAATTGTAAGGAATTTGTAG+TGG | - | chr7_3:14102246-14102265 | None:intergenic | 25.0% |
! | ACAAATTCCTTACAATTTAG+TGG | + | chr7_3:14102248-14102267 | Msa1093660:CDS | 25.0% |
! | TTCAAATCCACTAAATTGTA+AGG | - | chr7_3:14102258-14102277 | None:intergenic | 25.0% |
!! | TTCATATTTTCCATTTCAGT+TGG | - | chr7_3:14102299-14102318 | None:intergenic | 25.0% |
!!! | TTACTTCTTCTACCTTTTTT+AGG | - | chr7_3:14102460-14102479 | None:intergenic | 25.0% |
!!! | ATTTTAAAAGCTAGCTAAGT+GGG | - | chr7_3:14102493-14102512 | None:intergenic | 25.0% |
! | CGCTATATTTACAAATTGAA+GGG | - | chr7_3:14102862-14102881 | None:intergenic | 25.0% |
! | ACGCTATATTTACAAATTGA+AGG | - | chr7_3:14102863-14102882 | None:intergenic | 25.0% |
! | TTAAAACATAATTAGTGGTG+TGG | + | chr7_3:14103023-14103042 | Msa1093660:intron | 25.0% |
!! | GTGGTAAAAAATACTTTTGA+CGG | + | chr7_3:14103045-14103064 | Msa1093660:intron | 25.0% |
!! | TAGGGAAATATATGTTGATT+CGG | + | chr7_3:14103424-14103443 | Msa1093660:CDS | 25.0% |
! | GGGACTTATAGTTAAAATTA+TGG | + | chr7_3:14103467-14103486 | Msa1093660:CDS | 25.0% |
! | AAATTATGGTCGAAATTCAA+AGG | + | chr7_3:14103481-14103500 | Msa1093660:CDS | 25.0% |
! | ATAGAGTCATAAAGAGATAT+TGG | - | chr7_3:14103589-14103608 | None:intergenic | 25.0% |
!! | TGGAGAATGCTTAATTATTT+TGG | - | chr7_3:14103650-14103669 | None:intergenic | 25.0% |
! | ATGTTAGTGGCAAAATTAAA+GGG | - | chr7_3:14103780-14103799 | None:intergenic | 25.0% |
! | AATGTTAGTGGCAAAATTAA+AGG | - | chr7_3:14103781-14103800 | None:intergenic | 25.0% |
! | AACAAAAAATGTTGTAGTGT+TGG | - | chr7_3:14103931-14103950 | None:intergenic | 25.0% |
! | GTTTTACCCCACTTTATATT+CGG | + | chr7_3:14100487-14100506 | Msa1093660:intron | 30.0% |
TTTGCCGAATGTTTAAGAAT+TGG | - | chr7_3:14100548-14100567 | None:intergenic | 30.0% | |
TAGGATAGTTTCTCAATTAC+TGG | - | chr7_3:14100581-14100600 | None:intergenic | 30.0% | |
! | ACACTCAACTTGAAATGTTT+TGG | - | chr7_3:14100763-14100782 | None:intergenic | 30.0% |
AGCATTTGTATGTGAAATCT+GGG | - | chr7_3:14100883-14100902 | None:intergenic | 30.0% | |
AAGCATTTGTATGTGAAATC+TGG | - | chr7_3:14100884-14100903 | None:intergenic | 30.0% | |
! | CTTGAGTTTTTACAGAAAGA+AGG | - | chr7_3:14100937-14100956 | None:intergenic | 30.0% |
! | CAAAGCTACTTTCAATTCAA+AGG | - | chr7_3:14100966-14100985 | None:intergenic | 30.0% |
TTATATATTAACCCACTTGG+CGG | + | chr7_3:14101140-14101159 | Msa1093660:intron | 30.0% | |
TCATACTAACACATCGAAAT+TGG | - | chr7_3:14101230-14101249 | None:intergenic | 30.0% | |
CATTAGTTATGCATAAGGAA+AGG | - | chr7_3:14101331-14101350 | None:intergenic | 30.0% | |
AGATGCATTAGTTATGCATA+AGG | - | chr7_3:14101336-14101355 | None:intergenic | 30.0% | |
! | GTTTTTCTTGTAAATAGGAC+CGG | + | chr7_3:14101581-14101600 | Msa1093660:intron | 30.0% |
TGTACTTACTCATTTCCAAA+AGG | + | chr7_3:14101843-14101862 | Msa1093660:intron | 30.0% | |
AATTTCAAAAATAGGAAGGG+TGG | - | chr7_3:14101875-14101894 | None:intergenic | 30.0% | |
!!! | CTTGAAATTTCCTTTTTTGC+AGG | + | chr7_3:14101959-14101978 | Msa1093660:intron | 30.0% |
CGAATACAATTTAATTGCTG+AGG | + | chr7_3:14101989-14102008 | Msa1093660:CDS | 30.0% | |
TCCACATCTATAAGGAAATT+CGG | - | chr7_3:14102023-14102042 | None:intergenic | 30.0% | |
!! | AGAAGAAAGTTTTGGTGAAA+AGG | - | chr7_3:14102171-14102190 | None:intergenic | 30.0% |
! | GATGAGTTAGAAGAAAGTTT+TGG | - | chr7_3:14102179-14102198 | None:intergenic | 30.0% |
!! | ATTTGTAGTGGATGAATTTG+GGG | - | chr7_3:14102234-14102253 | None:intergenic | 30.0% |
!! | GAATTTGTAGTGGATGAATT+TGG | - | chr7_3:14102236-14102255 | None:intergenic | 30.0% |
TCTTGTTCCTAACCTAAAAA+AGG | + | chr7_3:14102445-14102464 | Msa1093660:CDS | 30.0% | |
!!! | TCTTCTACCTTTTTTAGGTT+AGG | - | chr7_3:14102455-14102474 | None:intergenic | 30.0% |
!! | GATTTTAAAAGCTAGCTAAG+TGG | - | chr7_3:14102494-14102513 | None:intergenic | 30.0% |
!!! | TAAAAAGCGTTTGGAAGTTT+TGG | + | chr7_3:14103260-14103279 | Msa1093660:CDS | 30.0% |
AACAAAAATAGAGTCACAAG+TGG | + | chr7_3:14103299-14103318 | Msa1093660:CDS | 30.0% | |
! | AATAGTAGTGTCTTACCTTT+TGG | + | chr7_3:14103522-14103541 | Msa1093660:CDS | 30.0% |
!!! | GTTTGAAACATCTTGTTTTG+TGG | - | chr7_3:14103670-14103689 | None:intergenic | 30.0% |
CAACACCAAAACAATCAAAA+GGG | + | chr7_3:14103740-14103759 | Msa1093660:intron | 30.0% | |
!! | CTTTACCCTTTTGATTGTTT+TGG | - | chr7_3:14103748-14103767 | None:intergenic | 30.0% |
AGGTTACAACATGAACATAA+AGG | + | chr7_3:14104137-14104156 | Msa1093660:CDS | 30.0% | |
! | GGAGGAAATTTCAAGTGTTA+AGG | - | chr7_3:14100742-14100761 | None:intergenic | 35.0% |
!! | CTCAACTTGAAATGTTTTGG+AGG | - | chr7_3:14100760-14100779 | None:intergenic | 35.0% |
AACATAGGAGCCTAAATATG+AGG | - | chr7_3:14101391-14101410 | None:intergenic | 35.0% | |
TTCTTATAAATAGGACCGGA+GGG | - | chr7_3:14101488-14101507 | None:intergenic | 35.0% | |
TTTCTTATAAATAGGACCGG+AGG | - | chr7_3:14101489-14101508 | None:intergenic | 35.0% | |
TCGTTCATTTCCTGCAAAAA+AGG | - | chr7_3:14101972-14101991 | None:intergenic | 35.0% | |
CCACATCTATAAGGAAATTC+GGG | - | chr7_3:14102022-14102041 | None:intergenic | 35.0% | |
! | ATCAACAATGTTTGACTTCG+AGG | + | chr7_3:14102090-14102109 | Msa1093660:CDS | 35.0% |
TCATGGTCATGATCATATCA+TGG | + | chr7_3:14102370-14102389 | Msa1093660:CDS | 35.0% | |
AAACATAATTAGTGGTGTGG+TGG | + | chr7_3:14103026-14103045 | Msa1093660:intron | 35.0% | |
!! | GAAAGAGCTTAAAAAGCGTT+TGG | + | chr7_3:14103251-14103270 | Msa1093660:CDS | 35.0% |
ATCACTATAAATGCCTGGTT+TGG | - | chr7_3:14103331-14103350 | None:intergenic | 35.0% | |
TTGTCATCACTATAAATGCC+TGG | - | chr7_3:14103336-14103355 | None:intergenic | 35.0% | |
GTAAACCAACAACACTATGA+AGG | - | chr7_3:14103380-14103399 | None:intergenic | 35.0% | |
!! | TGTTGGTTTACCATTTCAAG+TGG | + | chr7_3:14103389-14103408 | Msa1093660:CDS | 35.0% |
TCGATGATAGAATCTCCAAA+AGG | - | chr7_3:14103540-14103559 | None:intergenic | 35.0% | |
!!! | CCTTTTGATTGTTTTGGTGT+TGG | - | chr7_3:14103742-14103761 | None:intergenic | 35.0% |
CCAACACCAAAACAATCAAA+AGG | + | chr7_3:14103739-14103758 | Msa1093660:intron | 35.0% | |
CAAATCAGATAACCAGCTGT+TGG | - | chr7_3:14100289-14100308 | None:intergenic | 40.0% | |
CAACAGCTGGTTATCTGATT+TGG | + | chr7_3:14100287-14100306 | Msa1093660:CDS | 40.0% | |
!! | ATGGTGTTGATTTGAGACCA+TGG | + | chr7_3:14101172-14101191 | Msa1093660:intron | 40.0% |
AACCTAATACACTCACTCCA+TGG | - | chr7_3:14101192-14101211 | None:intergenic | 40.0% | |
CGAAACCTTGCCTCATATTT+AGG | + | chr7_3:14101378-14101397 | Msa1093660:intron | 40.0% | |
TTTCTTGTAAATAGGACCGG+AGG | + | chr7_3:14101584-14101603 | Msa1093660:intron | 40.0% | |
TTCTTGTAAATAGGACCGGA+GGG | + | chr7_3:14101585-14101604 | Msa1093660:intron | 40.0% | |
GCAACAAAGGACATGACTTA+CGG | - | chr7_3:14101704-14101723 | None:intergenic | 40.0% | |
TAGACGGAGAAATGCAACAA+AGG | - | chr7_3:14101717-14101736 | None:intergenic | 40.0% | |
TTTGTTGCATTTCTCCGTCT+AGG | + | chr7_3:14101716-14101735 | Msa1093660:intron | 40.0% | |
TTGGTTGGATTTGACCTAGA+CGG | - | chr7_3:14101733-14101752 | None:intergenic | 40.0% | |
CCATTATGAGCAAGTTTGGT+TGG | - | chr7_3:14101748-14101767 | None:intergenic | 40.0% | |
! | CCAACCAAACTTGCTCATAA+TGG | + | chr7_3:14101745-14101764 | Msa1093660:intron | 40.0% |
TTGGCCATTATGAGCAAGTT+TGG | - | chr7_3:14101752-14101771 | None:intergenic | 40.0% | |
CCCGAATTTCCTTATAGATG+TGG | + | chr7_3:14102019-14102038 | Msa1093660:CDS | 40.0% | |
GAAGCTCTTCCACATCTATA+AGG | - | chr7_3:14102031-14102050 | None:intergenic | 40.0% | |
!! | TTTGGGGTGTTGTCAAAACA+TGG | - | chr7_3:14102218-14102237 | None:intergenic | 40.0% |
! | TTTTCTCGATGACTCTTCTG+AGG | - | chr7_3:14102336-14102355 | None:intergenic | 40.0% |
CAGAAGAGTCATCGAGAAAA+AGG | + | chr7_3:14102336-14102355 | Msa1093660:CDS | 40.0% | |
AAAAGGTCTCGTGGTAATCA+TGG | + | chr7_3:14102353-14102372 | Msa1093660:CDS | 40.0% | |
AAGGTTCTCATCACATGAAG+AGG | - | chr7_3:14103361-14103380 | None:intergenic | 40.0% | |
GAGAACCTTCATAGTGTTGT+TGG | + | chr7_3:14103372-14103391 | Msa1093660:CDS | 40.0% | |
ACTCTTGCTTCCACTTGAAA+TGG | - | chr7_3:14103402-14103421 | None:intergenic | 40.0% | |
AAGTGGAAGCAAGAGTCTTA+GGG | + | chr7_3:14103406-14103425 | Msa1093660:CDS | 40.0% | |
AATCCGTTGCCTAAACGTTT+AGG | + | chr7_3:14103987-14104006 | Msa1093660:intron | 40.0% | |
CAACCTAAACGTTTAGGCAA+CGG | - | chr7_3:14103993-14104012 | None:intergenic | 40.0% | |
!! | TTGCCTAAACGTTTAGGTTG+CGG | + | chr7_3:14103993-14104012 | Msa1093660:intron | 40.0% |
AAACCGCAACCTAAACGTTT+AGG | - | chr7_3:14103999-14104018 | None:intergenic | 40.0% | |
!!! | ACGTTTAGGTTGCGGTTTTT+AGG | + | chr7_3:14104001-14104020 | Msa1093660:intron | 40.0% |
ACTTGTGAAGAACATACGCA+TGG | + | chr7_3:14104161-14104180 | Msa1093660:CDS | 40.0% | |
AATCGACATCAACCAACAGC+TGG | + | chr7_3:14100274-14100293 | Msa1093660:CDS | 45.0% | |
AGTATGAGTACCCGTTTCCA+CGG | + | chr7_3:14100379-14100398 | Msa1093660:intron | 45.0% | |
! | TTTTAACGTCCCGTGGAAAC+GGG | - | chr7_3:14100392-14100411 | None:intergenic | 45.0% |
!! | GTTTTAACGTCCCGTGGAAA+CGG | - | chr7_3:14100393-14100412 | None:intergenic | 45.0% |
!! | AGCAAAGTTTTAACGTCCCG+TGG | - | chr7_3:14100399-14100418 | None:intergenic | 45.0% |
GACCATGGAGTGAGTGTATT+AGG | + | chr7_3:14101187-14101206 | Msa1093660:intron | 45.0% | |
ACACATCGAAATTGGCACTG+AGG | - | chr7_3:14101222-14101241 | None:intergenic | 45.0% | |
AGGAGCCTAAATATGAGGCA+AGG | - | chr7_3:14101386-14101405 | None:intergenic | 45.0% | |
! | GAAGGGTGGATCATACCTTT+TGG | - | chr7_3:14101861-14101880 | None:intergenic | 45.0% |
ACCAGTGTCTCCAACTGAAA+TGG | + | chr7_3:14102286-14102305 | Msa1093660:CDS | 45.0% | |
TCCATTTCAGTTGGAGACAC+TGG | - | chr7_3:14102290-14102309 | None:intergenic | 45.0% | |
TCATCGAGAAAAAGGTCTCG+TGG | + | chr7_3:14102344-14102363 | Msa1093660:CDS | 45.0% | |
CAAGTGGAAGCAAGAGTCTT+AGG | + | chr7_3:14103405-14103424 | Msa1093660:CDS | 45.0% | |
!! | GCAAAATTAAAGGGTGCTGG+TGG | - | chr7_3:14103771-14103790 | None:intergenic | 45.0% |
! | GTGGCAAAATTAAAGGGTGC+TGG | - | chr7_3:14103774-14103793 | None:intergenic | 45.0% |
CGACGCAAAATCGTGGTTAA+AGG | + | chr7_3:14103959-14103978 | Msa1093660:intron | 45.0% | |
!!! | TTACAATTTTTTTAATATAT+TGG | - | chr7_3:14101771-14101790 | None:intergenic | 5.0% |
!!! | CATTTATATAATTATTTTAA+AGG | + | chr7_3:14102594-14102613 | Msa1093660:intron | 5.0% |
!! | TATTTATTCAAATAATTTAA+TGG | + | chr7_3:14102987-14103006 | Msa1093660:intron | 5.0% |
GTATGAGTACCCGTTTCCAC+GGG | + | chr7_3:14100380-14100399 | Msa1093660:intron | 50.0% | |
ATCAGACTAAGCCGCCAAGT+GGG | - | chr7_3:14101154-14101173 | None:intergenic | 50.0% | |
GTTGCTGAGAGTTGTGTGAG+TGG | - | chr7_3:14102117-14102136 | None:intergenic | 50.0% | |
CAAGTGGTTGTGACCAAACC+AGG | + | chr7_3:14103315-14103334 | Msa1093660:CDS | 50.0% | |
! | GATCCAATGCCAAGAGCACA+GGG | + | chr7_3:14103446-14103465 | Msa1093660:CDS | 50.0% |
! | ATCCAATGCCAAGAGCACAG+GGG | + | chr7_3:14103447-14103466 | Msa1093660:CDS | 50.0% |
CTATAAGTCCCCTGTGCTCT+TGG | - | chr7_3:14103458-14103477 | None:intergenic | 50.0% | |
GGTCTCTACCTGAGCAATGA+TGG | - | chr7_3:14103568-14103587 | None:intergenic | 50.0% | |
TAGGCTACGACGCAAAATCG+TGG | + | chr7_3:14103952-14103971 | Msa1093660:intron | 50.0% | |
!! | TAGGTTGCGGTTTTTAGGCG+TGG | + | chr7_3:14104006-14104025 | Msa1093660:intron | 50.0% |
CATCAGACTAAGCCGCCAAG+TGG | - | chr7_3:14101155-14101174 | None:intergenic | 55.0% | |
CACTTGGCGGCTTAGTCTGA+TGG | + | chr7_3:14101153-14101172 | Msa1093660:intron | 55.0% | |
! | GGATCCAATGCCAAGAGCAC+AGG | + | chr7_3:14103445-14103464 | Msa1093660:CDS | 55.0% |
CGACGTGACCATCATTGCTC+AGG | + | chr7_3:14103557-14103576 | Msa1093660:CDS | 55.0% | |
GTCCCCTGTGCTCTTGGCAT+TGG | - | chr7_3:14103452-14103471 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 14100243 | 14104209 | 14100243 | ID=Msa1093660;Name=Msa1093660 |
chr7_3 | mRNA | 14100243 | 14104209 | 14100243 | ID=Msa1093660-mRNA-1;Parent=Msa1093660;Name=Msa1093660-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.75|1|1|4|0|333 |
chr7_3 | exon | 14100243 | 14100308 | 14100243 | ID=Msa1093660-mRNA-1:exon:3289;Parent=Msa1093660-mRNA-1 |
chr7_3 | exon | 14101981 | 14102466 | 14101981 | ID=Msa1093660-mRNA-1:exon:3290;Parent=Msa1093660-mRNA-1 |
chr7_3 | exon | 14103210 | 14103578 | 14103210 | ID=Msa1093660-mRNA-1:exon:3291;Parent=Msa1093660-mRNA-1 |
chr7_3 | exon | 14104129 | 14104209 | 14104129 | ID=Msa1093660-mRNA-1:exon:3292;Parent=Msa1093660-mRNA-1 |
chr7_3 | CDS | 14100243 | 14100308 | 14100243 | ID=Msa1093660-mRNA-1:cds;Parent=Msa1093660-mRNA-1 |
chr7_3 | CDS | 14101981 | 14102466 | 14101981 | ID=Msa1093660-mRNA-1:cds;Parent=Msa1093660-mRNA-1 |
chr7_3 | CDS | 14103210 | 14103578 | 14103210 | ID=Msa1093660-mRNA-1:cds;Parent=Msa1093660-mRNA-1 |
chr7_3 | CDS | 14104129 | 14104209 | 14104129 | ID=Msa1093660-mRNA-1:cds;Parent=Msa1093660-mRNA-1 |
Gene Sequence |
Protein sequence |