AlfalfaGEDB | Msa1093670

M. sativa cultivar zhongmu-4 / Msa1093670

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01476.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1093670	XP_013448055.2	95.335	686	20	1	1	686	1	674	0.0	1349

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1093670	sp\|Q9SGI7\|LYK2_ARATH	40.242	661	310	18	43	679	48	647	3.37e-144	438

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1093670	A0A072TXB8	95.301	681	20	1	6	686	1	669	0.0	1339

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1093670	MtrunA17_Chr7g0225871	98.396	374	6	0	313	686	1	374	0.0	761
Msa1093670	MtrunA17_Chr5g0439334	30.938	640	391	19	31	657	33	634	2.22e-77	260
Msa1093670	MtrunA17_Chr3g0119351	30.363	662	403	24	26	673	53	670	1.95e-73	250
Msa1093670	MtrunA17_Chr1g0154511	29.706	680	394	21	12	667	1	620	2.12e-69	238
Msa1093670	MtrunA17_Chr5g0403371	28.900	609	336	19	55	657	47	564	4.74e-63	220
Msa1093670	MtrunA17_Chr8g0373711	27.201	636	358	19	38	662	24	565	5.10e-56	201
Msa1093670	MtrunA17_Chr4g0028801	29.329	641	353	25	37	658	44	603	6.33e-53	192
Msa1093670	MtrunA17_Chr7g0248904	25.149	672	417	23	26	668	43	657	2.26e-51	189
Msa1093670	MtrunA17_Chr5g0439631	28.295	569	333	21	105	657	86	595	1.22e-50	186
Msa1093670	MtrunA17_Chr5g0403381	34.868	304	180	7	353	656	342	627	1.20e-48	181

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1093670	AT3G01840.1	40.242	661	310	18	43	679	48	647	3.43e-145	438
Msa1093670	AT2G33580.1	30.149	670	418	16	9	658	5	644	2.03e-77	261
Msa1093670	AT2G23770.1	29.378	691	375	24	7	666	1	609	3.63e-69	238
Msa1093670	AT3G21630.1	28.475	590	342	21	103	671	85	615	3.75e-51	188
Msa1093670	AT4G22130.2	31.042	451	251	18	245	660	109	534	1.99e-43	165
Msa1093670	AT4G22130.1	31.486	451	249	19	245	660	250	675	1.03e-42	165
Msa1093670	AT1G51940.1	31.410	312	194	6	355	658	328	627	1.42e-39	155
Msa1093670	AT2G28250.2	32.923	325	186	9	356	666	198	504	3.57e-39	153
Msa1093670	AT2G28250.5	32.923	325	186	9	356	666	198	504	3.57e-39	153
Msa1093670	AT2G28250.4	32.923	325	186	9	356	666	198	504	3.57e-39	153

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Find 99 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGTTGTTCCTCATT+TGG	0.306577	7_3:+14150774	None:intergenic
AAAAGACCAAACCTCTCATG+TGG	0.602505	7_3:+14152728	None:intergenic
AAAATGGTTCATTGAAAGAT+TGG	0.330095	7_3:-14151439	Msa1093670:CDS
AAAGGGCAAGCACATTTCAA+AGG	0.550535	7_3:+14152259	None:intergenic
AAATGATACAATTTCAAATT+TGG	0.145964	7_3:-14152182	Msa1093670:CDS
AAATTTGTATTGGGTTGTTT+TGG	0.297687	7_3:+14152025	None:intergenic
AAGGGCAAGCACATTTCAAA+GGG	0.559478	7_3:+14152260	None:intergenic
AATTATGCTTCTTGGAGTAT+TGG	0.372064	7_3:-14151155	Msa1093670:CDS
AATTGATTGCAAATGCAAAA+AGG	0.262652	7_3:-14152440	Msa1093670:CDS
ACATTTCTATGCACATAACT+TGG	0.455569	7_3:+14151287	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAATCTTACCCTATACTT+AGG	-	chr7_3:14150929-14150948	Msa1093670:CDS	30.0%
CAATCAATTGGTATAAGAAG+AGG	+	chr7_3:14151025-14151044	None:intergenic	30.0%
GCTATTAAAGAGAATAACCT+TGG	-	chr7_3:14151151-14151170	Msa1093670:CDS	30.0%
AGAAAGAGTGAAGTGTATAT+TGG	-	chr7_3:14151526-14151545	Msa1093670:CDS	30.0%
TATCTGGTTGAAACAAAAGA+AGG	-	chr7_3:14151603-14151622	Msa1093670:CDS	30.0%
TTCATGCAAAGAAAGAGATA+TGG	-	chr7_3:14151636-14151655	Msa1093670:CDS	30.0%
AGTTCAAATTGTCACATTGA+AGG	-	chr7_3:14151823-14151842	Msa1093670:CDS	30.0%
GTTCAAATTGTCACATTGAA+GGG	-	chr7_3:14151824-14151843	Msa1093670:CDS	30.0%
CAAAAGAGTAAAAACTGAGA+TGG	-	chr7_3:14151888-14151907	Msa1093670:CDS	30.0%
TTGGAACAAGTATTTCAGAA+GGG	-	chr7_3:14151977-14151996	Msa1093670:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	14150719	14152779	14150719	ID=Msa1093670;Name=Msa1093670
chr7_3	mRNA	14150719	14152779	14150719	ID=Msa1093670-mRNA-1;Parent=Msa1093670;Name=Msa1093670-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|686
chr7_3	exon	14150719	14152779	14150719	ID=Msa1093670-mRNA-1:exon:3293;Parent=Msa1093670-mRNA-1
chr7_3	CDS	14150719	14152779	14150719	ID=Msa1093670-mRNA-1:cds;Parent=Msa1093670-mRNA-1

Gene Sequence

>Msa1093670

ATGGGCATAGTAGAAATGATGATTACATTCCACATGAGAGGTTTGGTCTTTTTCCTTTGGCTCTTTCTCTCTTCATTAGGTAAAAACCTTCTAACCTGTGAAACAACATCATCACATGATTCTAGCTACCATTGCAATGAAAATGAGTCACATAATCATCATTGTGAAACATTTGCACTCTTTTTCACAAACTCTCACTACTACTCTCTTTCAAATCTTACCCTATACTTAGGACTCAACAAGTTTGTCATAGCAGAAACCAATGGTTTCTCTTTAGAAACTGAGTTCCTTCCACAGAATCAACCTCTTCTTATACCAATTGATTGCAAATGCAAAAAGGGTGATTTTCAAGCCGAGTTAACAAAAATTACTATCAAAGGTGAGAGTTTTTATGACATTTTTCAATCACTTGAAGGTTTAACAACATGCAAGGCTATTAAAGAGAATAACCTTGGTTTGTCACCTTGGAACCTTGATGCTAAACTCAAATTGATTATCCCTTTGAAATGTGCTTGCCCTTTTTCTTCTTTTGTTATACCAAAACCAAAATTTCTTCTTTCTTATCCTATAATTGAAAATGATACAATTTCAAATTTGGCCTTAAAGTTCAATATTACAAAAGAAGCTATTGTTATTGCCAATAACATTTCATCAGAAGAAAGAAGCTTAGAACCTTTTACATCTATTCTAATTCCATTGAATGGTAAACCTTTCCTTGATCCTTTAGCTAAGCCAAAACAACCCAATACAAATTTTCCAAAAACCAACAATATTCCAATAAATAGTCAACACAAGAAGTCAACAATGAGAAAGAGTGAAGTGTATATTGGTCTAATTGGTGTTGCAATTGGACTTTTCTTTGCTTTATTAGTAACTTTTTGCTTTATCTGGTTGAAACAAAAGAAGGTTGAAGAGAATTCATGCAAAGAAAGAGATATGGAGCTACAACATCTAAATCAAAGTGTGAGAACAACAAGTGATAAGAAAGTTTCATTTGAAGGGTCACAAGACACACTTGATAGTAAAATCATTGACGCGACGCCGCGTAAGATGTTACTGGAGACATATACAATTGATGATTTGAGAAAAGCAACAGAGGATTTCAGTTCAAATTGTCACATTGAAGGGTCAGTTTTTCATGGTTGTTTAAATGGTAAAAACATGGCAATCAAAAGAGTAAAAACTGAGATGGTGTCAAAATTAGACTTTGGTCTTTTTCATGATGCAATTCATCATCATCCTAACATAATTAGCCTCTTTGGAACAAGTATTTCAGAAGGGTCAGATTCAGAGTCATTTTTGGTTTTTGAGTATGCTAAAAATGGTTCATTGAAAGATTGGCTTCATGGTGGCTTGGCCATCAAGAATCAATTCATCTCATCTTGCTACTGTTTCTTGAATTGGAACCAAAGGCTTAAGATTTGTCTTGATGTTGCAAGTGCCTTGGATTACATGCACCATGTAATGATACCAAGTTATGTGCATAGAAATGTGAAGAGTAGGAACATCTTTTTAGATGAAGAATTCGGTGCTAAGTTAGGTAATTTTGGTATGGCAAGTTTTGTTGAGAATGAAACTGAGGATCCTCAATTTTATTCAACTAATTATGCTTCTTGGAGTATTGGTTATTTAGCACCTGAATATGTTCACCAAGGTATAGTTTCAACAAGCATTGATATATTTGCTTTTGGTGTGGTTTTGTTAGAAGTTTTATCTGGTCAAACACCTATAAGTGGATCAAGCTGTGATAAAGGTGAAGGAAGTGTTTGGCTTAGTGACAAAATAAAGACAATTTTGATGTCAGAAAATAATGTGAATGAGTTATTAAGTGAGTGGATAGATAGTGTATTAGGTGAGAATTTCTCATTTGATGCAGCTTTGGAAGTGGCTAATATTGCAAGAGCTTGCGTGGAGGAAGATTGTTGTTTGAGGCCTAGTGCAAGGGAAATTGTTGAGAAGCTATCAAGATTGGTGGAGGAATTACCAAATGAGGAACAACAAGTTTTGATGAGTGAAAGCTCTTCCAATCCTCTGGTTGGAGCACTAGAAAGCAGTATGTGA

Protein sequence

>Msa1093670

MGIVEMMITFHMRGLVFFLWLFLSSLGKNLLTCETTSSHDSSYHCNENESHNHHCETFALFFTNSHYYSLSNLTLYLGLNKFVIAETNGFSLETEFLPQNQPLLIPIDCKCKKGDFQAELTKITIKGESFYDIFQSLEGLTTCKAIKENNLGLSPWNLDAKLKLIIPLKCACPFSSFVIPKPKFLLSYPIIENDTISNLALKFNITKEAIVIANNISSEERSLEPFTSILIPLNGKPFLDPLAKPKQPNTNFPKTNNIPINSQHKKSTMRKSEVYIGLIGVAIGLFFALLVTFCFIWLKQKKVEENSCKERDMELQHLNQSVRTTSDKKVSFEGSQDTLDSKIIDATPRKMLLETYTIDDLRKATEDFSSNCHIEGSVFHGCLNGKNMAIKRVKTEMVSKLDFGLFHDAIHHHPNIISLFGTSISEGSDSESFLVFEYAKNGSLKDWLHGGLAIKNQFISSCYCFLNWNQRLKICLDVASALDYMHHVMIPSYVHRNVKSRNIFLDEEFGAKLGNFGMASFVENETEDPQFYSTNYASWSIGYLAPEYVHQGIVSTSIDIFAFGVVLLEVLSGQTPISGSSCDKGEGSVWLSDKIKTILMSENNVNELLSEWIDSVLGENFSFDAALEVANIARACVEEDCCLRPSAREIVEKLSRLVEELPNEEQQVLMSESSSNPLVGALESSM*