AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1094030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1094030 MtrunA17_Chr7g0225371 97.233 253 7 0 1 253 1 253 0.0 515
Msa1094030 MtrunA17_Chr7g0225251 96.316 190 7 0 64 253 3 192 4.05e-136 381
Msa1094030 MtrunA17_Chr7g0225341 78.378 111 22 2 136 245 8 117 8.25e-53 167
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1094030 AT5G14140.1 63.563 247 81 4 11 249 14 259 9.88e-112 322

Find 79 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTCATGATTCTTTCTTTC+AGG 0.183557 7_3:-15063802 Msa1094030:CDS
GAAGTCTTCTGTCCCATTGC+TGG 0.271752 7_3:-15063951 Msa1094030:CDS
TGTTTAACTCATATTCTCTT+TGG 0.290369 7_3:-15062212 Msa1094030:three_prime_UTR
GGGTTGGAACTTACGTGAAA+TGG 0.341316 7_3:+15065125 None:intergenic
TGCTGGGTGTGGAGCGCGTT+TGG 0.354156 7_3:-15063934 Msa1094030:CDS
GCGCGGGAAGGGATCTAATT+CGG 0.361395 7_3:-15062516 Msa1094030:CDS
CATATAGTATGAATGTTTAG+TGG 0.382154 7_3:-15062846 Msa1094030:intron
TTTATCCTGTGTTTCTTTGA+AGG 0.386367 7_3:+15062722 None:intergenic
ATGGGCACAAAACCTATGTT+AGG 0.387427 7_3:+15062295 None:intergenic
TTCTGTCCCATTGCTGGGTG+TGG 0.397837 7_3:-15063945 Msa1094030:CDS
CAAAACGGAAAATTTGAATC+CGG 0.397939 7_3:+15065153 None:intergenic
ATGACATGCCTTTGGTGTTA+CGG 0.399250 7_3:+15062558 None:intergenic
ATTAGCAGATATAATTTGAA+TGG 0.399537 7_3:+15062276 None:intergenic
CGCGGGAAGGGATCTAATTC+GGG 0.406429 7_3:-15062515 Msa1094030:CDS
TCTCAAAAGGAGGATACTTC+AGG 0.418130 7_3:-15062680 Msa1094030:CDS
ACTCCTTCCTCCATCAGCTT+TGG 0.427536 7_3:-15062584 Msa1094030:CDS
ACGAGAACTTCTTGTCAAAC+AGG 0.437900 7_3:-15065070 Msa1094030:intron
CGTGAAATGGGTTTCCAAAA+CGG 0.438517 7_3:+15065138 None:intergenic
GGTTGGAACTTACGTGAAAT+GGG 0.448158 7_3:+15065126 None:intergenic
GACTCTAGAACACACAGAAC+AGG 0.456459 7_3:+15063863 None:intergenic
ATTGTGATTATTAATACTCC+TGG 0.456631 7_3:-15062069 None:intergenic
AAGTCTTCTGTCCCATTGCT+GGG 0.459510 7_3:-15063950 Msa1094030:CDS
TATGTAAGTGTCCCTAACAT+AGG 0.476678 7_3:-15062307 Msa1094030:three_prime_UTR
GGAGGATACTTCAGGAATGA+TGG 0.477569 7_3:-15062672 Msa1094030:CDS
AGGGACAAATGACATGCCTT+TGG 0.478422 7_3:+15062550 None:intergenic
GGAAGTGGAAAATCAAAATC+CGG 0.482912 7_3:-15065172 Msa1094030:CDS
AAAGAAAGAATCATGAGCTT+CGG 0.485050 7_3:+15063806 None:intergenic
CGAGCTGTTCAGCGCGGGAA+GGG 0.490505 7_3:-15062527 Msa1094030:CDS
TCCCTCGAGCTGTTCAGCGC+GGG 0.491415 7_3:-15062532 Msa1094030:CDS
TTAGCAGATATAATTTGAAT+GGG 0.493733 7_3:+15062277 None:intergenic
TTCCCGCGCTGAACAGCTCG+AGG 0.497355 7_3:+15062530 None:intergenic
TGACAAGAAGTTCTCGTTCG+AGG 0.497533 7_3:+15065076 None:intergenic
GATAGCGAAGAAAGGTGAAT+CGG 0.497649 7_3:+15065104 None:intergenic
AATTCAAAAGCTACAAAAGT+AGG 0.497972 7_3:-15062808 Msa1094030:CDS
TTGCAAAATTGCTCTATACC+AGG 0.501359 7_3:-15062405 Msa1094030:three_prime_UTR
ATCAGAAAATAGAATCATGC+TGG 0.501729 7_3:-15062356 Msa1094030:three_prime_UTR
TGAATATTAAGCTTTGCAAA+TGG 0.508445 7_3:-15062114 Msa1094030:three_prime_UTR
GATTCACCTTTCTTCGCTAT+CGG 0.511476 7_3:-15065102 Msa1094030:CDS
GTAAGCTTATTTCTTAGTAA+CGG 0.517163 7_3:+15062487 None:intergenic
ACCAGCAAGGAAAATGAGAA+TGG 0.523445 7_3:+15065207 None:intergenic
TCGAGCTGTTCAGCGCGGGA+AGG 0.524899 7_3:-15062528 Msa1094030:CDS
TTAATTTGAAAAGGTTGCGT+TGG 0.527267 7_3:-15064952 Msa1094030:intron
ACGCGCTCCACACCCAGCAA+TGG 0.530230 7_3:+15063938 None:intergenic
CGAAGAAAGGTGAATCGGGT+TGG 0.552955 7_3:+15065109 None:intergenic
ATTTGAATTAACACAAGAGA+AGG 0.553168 7_3:-15064928 Msa1094030:CDS
TAGTATGAATGTTTAGTGGA+AGG 0.553562 7_3:-15062842 Msa1094030:CDS
CTCTGCCTTCAAAGAAACAC+AGG 0.556458 7_3:-15062727 Msa1094030:CDS
TACTTCAGGAATGATGGAAG+TGG 0.560728 7_3:-15062666 Msa1094030:CDS
GGAAGTGGAAAATGCAGCTA+TGG 0.560741 7_3:-15062651 Msa1094030:CDS
ATTTGATACAAGAGGATGGA+AGG 0.563551 7_3:-15064893 Msa1094030:intron
ATAGCGAAGAAAGGTGAATC+GGG 0.565377 7_3:+15065105 None:intergenic
TGGGCACAAAACCTATGTTA+GGG 0.565786 7_3:+15062296 None:intergenic
GAATGTTTAGTGGAAGGGTG+CGG 0.566139 7_3:-15062836 Msa1094030:CDS
AATAAATGTCAACAAGAAGC+TGG 0.567276 7_3:+15062089 None:intergenic
AGTATGAATGTTTAGTGGAA+GGG 0.570063 7_3:-15062841 Msa1094030:CDS
CGACCAAAGCTGATGGAGGA+AGG 0.576405 7_3:+15062581 None:intergenic
TGCAAAATTGCTCTATACCA+GGG 0.579873 7_3:-15062404 Msa1094030:three_prime_UTR
AATTATATCTGCTAATGATG+TGG 0.580686 7_3:-15062269 Msa1094030:three_prime_UTR
AGGTTACCGATAGCGAAGAA+AGG 0.581308 7_3:+15065096 None:intergenic
GCTTGAGGATTTGATACAAG+AGG 0.581314 7_3:-15064901 Msa1094030:CDS
CTTGCTGGTTGAACTAGCGA+TGG 0.583229 7_3:-15065193 Msa1094030:exon
GGTTGAACTAGCGATGGAAG+TGG 0.593489 7_3:-15065187 Msa1094030:exon
AGTATCTAGATTAAATACTT+CGG 0.598587 7_3:-15062612 Msa1094030:CDS
ACAAGAGAAGGAACAGCTTG+AGG 0.601672 7_3:-15064916 Msa1094030:CDS
TATGCTGAGCAAACGTGATG+TGG 0.604052 7_3:+15063836 None:intergenic
GAGGATTTGATACAAGAGGA+TGG 0.605203 7_3:-15064897 Msa1094030:CDS
TTTCAGGCAAAAGTTGCTCG+TGG 0.610110 7_3:-15063786 Msa1094030:CDS
GTTACGGCGACCAAAGCTGA+TGG 0.611864 7_3:+15062574 None:intergenic
ATCTAGATACTGCTGAAACA+AGG 0.615031 7_3:+15062624 None:intergenic
TCCCGCGCTGAACAGCTCGA+GGG 0.617014 7_3:+15062531 None:intergenic
TTTGGTCGCCGTAACACCAA+AGG 0.617378 7_3:-15062566 Msa1094030:CDS
CATCGCTAGTTCAACCAGCA+AGG 0.624239 7_3:+15065194 None:intergenic
AAAGCTGATGGAGGAAGGAG+TGG 0.625836 7_3:+15062586 None:intergenic
ATGCTGAGCAAACGTGATGT+GGG 0.625974 7_3:+15063837 None:intergenic
GTCCCTCGAGCTGTTCAGCG+CGG 0.630621 7_3:-15062533 Msa1094030:CDS
AGTTGCTCGTGGCTATGACA+TGG 0.638718 7_3:-15063775 Msa1094030:intron
AGAAAATAGAATCATGCTGG+AGG 0.643059 7_3:-15062353 Msa1094030:three_prime_UTR
ACGGCGACCAAAGCTGATGG+AGG 0.668193 7_3:+15062577 None:intergenic
TGCTGAGCAAACGTGATGTG+GGG 0.701816 7_3:+15063838 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTTTGAATTAAAATT+TGG + chr7_3:15062077-15062096 None:intergenic 10.0%
!! TCAAAAATAAAAAAAGAATA+AGG - chr7_3:15062897-15062916 Msa1094030:intron 10.0%
!! TTGAATTTATACTTATAAAA+TGG - chr7_3:15063335-15063354 Msa1094030:intron 10.0%
!!! ATTTGTAAGATTTTAAATTA+AGG + chr7_3:15063723-15063742 None:intergenic 10.0%
!! AAATTAAATAGAAGATATAA+AGG + chr7_3:15063821-15063840 None:intergenic 10.0%
!! ACATTAAAAAACCTTAATTT+GGG - chr7_3:15062598-15062617 Msa1094030:CDS 15.0%
!!! TATGATTTAATTTAATGACA+TGG - chr7_3:15063623-15063642 Msa1094030:intron 15.0%
!! ACATAACCAAATTATAAAAA+AGG + chr7_3:15063760-15063779 None:intergenic 15.0%
!! AACTAAAATAGTAAACAAAA+AGG + chr7_3:15064142-15064161 None:intergenic 15.0%
!! GTTATAGATAATTAATGATA+GGG - chr7_3:15064297-15064316 Msa1094030:intron 15.0%
!! GACATTAAAAAACCTTAATT+TGG - chr7_3:15062597-15062616 Msa1094030:CDS 20.0%
!!! TATTCTAATGCCTATTATTT+TGG + chr7_3:15062758-15062777 None:intergenic 20.0%
!! AAATAATAGGCATTAGAATA+AGG - chr7_3:15062758-15062777 Msa1094030:CDS 20.0%
!! TGATTTAATACACTGTTATT+AGG - chr7_3:15062925-15062944 Msa1094030:intron 20.0%
!! AATTTCAAGAACTATAAGAA+AGG + chr7_3:15063067-15063086 None:intergenic 20.0%
!! TATATCTGTAATCATTTATG+TGG - chr7_3:15063095-15063114 Msa1094030:intron 20.0%
!!! TTGTTATTTGAAACATACAA+TGG + chr7_3:15063147-15063166 None:intergenic 20.0%
!!! TGTATCTTTTATCAACATAA+CGG - chr7_3:15063217-15063236 Msa1094030:intron 20.0%
!!! GTAAGATTTTAAATTAAGGT+AGG + chr7_3:15063719-15063738 None:intergenic 20.0%
!!! GAAAGACCTTTTTTATAATT+TGG - chr7_3:15063751-15063770 Msa1094030:intron 20.0%
!!! TGATTTTGAAATCAAAGATT+GGG + chr7_3:15063998-15064017 None:intergenic 20.0%
!!! ATGATTTTGAAATCAAAGAT+TGG + chr7_3:15063999-15064018 None:intergenic 20.0%
!! TTATTACGTAGAGATAATAT+GGG + chr7_3:15064074-15064093 None:intergenic 20.0%
!! AAGAAGGATTTCAAATTAAA+TGG - chr7_3:15064268-15064287 Msa1094030:intron 20.0%
!! CGTTATAGATAATTAATGAT+AGG - chr7_3:15064296-15064315 Msa1094030:intron 20.0%
!!! ACATATGAATTTTCTCTATT+AGG - chr7_3:15064440-15064459 Msa1094030:intron 20.0%
!! AGTATCTAGATTAAATACTT+CGG - chr7_3:15064739-15064758 Msa1094030:intron 20.0%
!! TTAGCAGATATAATTTGAAT+GGG + chr7_3:15065077-15065096 None:intergenic 20.0%
!! ATTAGCAGATATAATTTGAA+TGG + chr7_3:15065078-15065097 None:intergenic 20.0%
!!! ACTTGCGTTTTAATTTGAAA+AGG - chr7_3:15062390-15062409 Msa1094030:three_prime_UTR 25.0%
! ATTTGAATTAACACAAGAGA+AGG - chr7_3:15062423-15062442 Msa1094030:three_prime_UTR 25.0%
!! TTAAAAAACCTTAATTTGGG+TGG - chr7_3:15062601-15062620 Msa1094030:CDS 25.0%
!! TAAAAAACCTTAATTTGGGT+GGG - chr7_3:15062602-15062621 Msa1094030:CDS 25.0%
!! TGTTGATAAAAGATACACTT+TGG + chr7_3:15063214-15063233 None:intergenic 25.0%
! AAAATCACAATCTTCAACAA+AGG + chr7_3:15063293-15063312 None:intergenic 25.0%
!! TTTTCCTAGAAGTTAATCTT+TGG - chr7_3:15063310-15063329 Msa1094030:intron 25.0%
! AAGCAATATGTTACAAAATG+AGG + chr7_3:15063372-15063391 None:intergenic 25.0%
! AGATATAAAGGATGTAACAA+AGG + chr7_3:15063809-15063828 None:intergenic 25.0%
! GTTATTACGTAGAGATAATA+TGG + chr7_3:15064075-15064094 None:intergenic 25.0%
! TATAGGTCAAATCATTAAGA+AGG - chr7_3:15064252-15064271 Msa1094030:intron 25.0%
! AAATGACAATCTCTATAACA+TGG - chr7_3:15064467-15064486 Msa1094030:intron 25.0%
! CATATAGTATGAATGTTTAG+TGG - chr7_3:15064505-15064524 Msa1094030:intron 25.0%
! AATTCAAAAGCTACAAAAGT+AGG - chr7_3:15064543-15064562 Msa1094030:intron 25.0%
!! GTAAGCTTATTTCTTAGTAA+CGG + chr7_3:15064867-15064886 None:intergenic 25.0%
! AATTATATCTGCTAATGATG+TGG - chr7_3:15065082-15065101 Msa1094030:CDS 25.0%
! TGTTTAACTCATATTCTCTT+TGG - chr7_3:15065139-15065158 Msa1094030:CDS 25.0%
! TGAATATTAAGCTTTGCAAA+TGG - chr7_3:15065237-15065256 Msa1094030:five_prime_UTR 25.0%
CAAAACGGAAAATTTGAATC+CGG + chr7_3:15062201-15062220 None:intergenic 30.0%
! TTAATTTGAAAAGGTTGCGT+TGG - chr7_3:15062399-15062418 Msa1094030:three_prime_UTR 30.0%
CCACATTAATCGAGAATATA+AGG + chr7_3:15062549-15062568 None:intergenic 30.0%
CCTTATATTCTCGATTAATG+TGG - chr7_3:15062546-15062565 Msa1094030:CDS 30.0%
TTCTTGAGAACTAGAATGTT+TGG - chr7_3:15062724-15062743 Msa1094030:CDS 30.0%
GGAGTTAAGACCAAAATAAT+AGG - chr7_3:15062745-15062764 Msa1094030:CDS 30.0%
CATCATTAACTGTTCTCAAA+GGG + chr7_3:15063000-15063019 None:intergenic 30.0%
AAAGCCAAAGATTAACTTCT+AGG + chr7_3:15063317-15063336 None:intergenic 30.0%
AAAGAAAGAATCATGAGCTT+CGG + chr7_3:15063548-15063567 None:intergenic 30.0%
TCATAGTTGAGTTTCTTAGA+AGG - chr7_3:15063853-15063872 Msa1094030:CDS 30.0%
! ATTTGGACTATAGTTTTCTC+TGG + chr7_3:15063923-15063942 None:intergenic 30.0%
AACTATAGTCCAAATCATCA+AGG - chr7_3:15063928-15063947 Msa1094030:CDS 30.0%
! ATTCCAAATCCTTGATGATT+TGG + chr7_3:15063940-15063959 None:intergenic 30.0%
! TCTTTTTGTTGAAGGGTTAT+TGG + chr7_3:15064023-15064042 None:intergenic 30.0%
AGAGAGAAATTCATCAACAT+GGG + chr7_3:15064110-15064129 None:intergenic 30.0%
AAGAGAGAAATTCATCAACA+TGG + chr7_3:15064111-15064130 None:intergenic 30.0%
TAGTATGAATGTTTAGTGGA+AGG - chr7_3:15064509-15064528 Msa1094030:intron 30.0%
AGTATGAATGTTTAGTGGAA+GGG - chr7_3:15064510-15064529 Msa1094030:intron 30.0%
TTGAAAAACTCAAATGACGT+CGG + chr7_3:15064599-15064618 None:intergenic 30.0%
!!! GTCATTTGAGTTTTTCAAGA+AGG - chr7_3:15064601-15064620 Msa1094030:intron 30.0%
TTTATCCTGTGTTTCTTTGA+AGG + chr7_3:15064632-15064651 None:intergenic 30.0%
!!! TAATCATCTTTTTTCAACCC+TGG + chr7_3:15064967-15064986 None:intergenic 30.0%
ATCAGAAAATAGAATCATGC+TGG - chr7_3:15064995-15065014 Msa1094030:intron 30.0%
AATAAATGTCAACAAGAAGC+TGG + chr7_3:15065265-15065284 None:intergenic 30.0%
GGAAGTGGAAAATCAAAATC+CGG - chr7_3:15062179-15062198 Msa1094030:three_prime_UTR 35.0%
! CGGATTCAAATTTTCCGTTT+TGG - chr7_3:15062199-15062218 Msa1094030:three_prime_UTR 35.0%
ATTTGATACAAGAGGATGGA+AGG - chr7_3:15062458-15062477 Msa1094030:three_prime_UTR 35.0%
TTTAGCTAGTACACCCAAAT+TGG + chr7_3:15062701-15062720 None:intergenic 35.0%
TAGAATAAGGCGTGCTAATT+TGG - chr7_3:15062771-15062790 Msa1094030:CDS 35.0%
AGAATAAGGCGTGCTAATTT+GGG - chr7_3:15062772-15062791 Msa1094030:CDS 35.0%
ATTCTTCCCAGTGTCAATTT+GGG - chr7_3:15062856-15062875 Msa1094030:intron 35.0%
TTAGGTCTTACTCAAACTTC+AGG - chr7_3:15062943-15062962 Msa1094030:intron 35.0%
CCATCATTAACTGTTCTCAA+AGG + chr7_3:15063001-15063020 None:intergenic 35.0%
! CCTTTGAGAACAGTTAATGA+TGG - chr7_3:15062998-15063017 Msa1094030:intron 35.0%
AGGTAAGCAAGTAGTATAAC+AGG + chr7_3:15063047-15063066 None:intergenic 35.0%
TGAGTTTGACGAAATCACAA+TGG - chr7_3:15063167-15063186 Msa1094030:intron 35.0%
TTGGAGCTTCAACAAAATCA+CGG + chr7_3:15063195-15063214 None:intergenic 35.0%
TGTAACATATTGCTTTGTGC+AGG - chr7_3:15063377-15063396 Msa1094030:intron 35.0%
GTAACATATTGCTTTGTGCA+GGG - chr7_3:15063378-15063397 Msa1094030:intron 35.0%
AGCTCATGATTCTTTCTTTC+AGG - chr7_3:15063549-15063568 Msa1094030:intron 35.0%
AAGGATGTAACAAAGGAAGA+AGG + chr7_3:15063802-15063821 None:intergenic 35.0%
AAAGACAGTCCATTAGTTAG+TGG - chr7_3:15063887-15063906 Msa1094030:CDS 35.0%
TTCGCTTTACCACTAACTAA+TGG + chr7_3:15063899-15063918 None:intergenic 35.0%
AGTCCAAATCATCAAGGATT+TGG - chr7_3:15063934-15063953 Msa1094030:CDS 35.0%
! TAATATGGGTTGTTGGAATG+TGG + chr7_3:15064060-15064079 None:intergenic 35.0%
! GTAGAGATAATATGGGTTGT+TGG + chr7_3:15064067-15064086 None:intergenic 35.0%
TCATAGTTGAGTTTGTCAGA+AGG - chr7_3:15064174-15064193 Msa1094030:intron 35.0%
CTATTGGACTATCTTCCATT+TGG + chr7_3:15064204-15064223 None:intergenic 35.0%
GAAGATAGTCCAATAGTTAG+AGG - chr7_3:15064208-15064227 Msa1094030:intron 35.0%
AGTCCAATAGTTAGAGGTAA+AGG - chr7_3:15064214-15064233 Msa1094030:intron 35.0%
GTCCAATAGTTAGAGGTAAA+GGG - chr7_3:15064215-15064234 Msa1094030:intron 35.0%
AACAACAACAACAACAACAG+AGG + chr7_3:15064384-15064403 None:intergenic 35.0%
TGAAAAACTCAAATGACGTC+GGG + chr7_3:15064598-15064617 None:intergenic 35.0%
ACGCAAAAAACCTTCTCAAA+AGG - chr7_3:15064658-15064677 Msa1094030:intron 35.0%
CAAAAAACCTTCTCAAAAGG+AGG - chr7_3:15064661-15064680 Msa1094030:intron 35.0%
ATCTAGATACTGCTGAAACA+AGG + chr7_3:15064730-15064749 None:intergenic 35.0%
! GTATAGAGCAATTTTGCAAC+GGG + chr7_3:15064945-15064964 None:intergenic 35.0%
! GGTATAGAGCAATTTTGCAA+CGG + chr7_3:15064946-15064965 None:intergenic 35.0%
TTGCAAAATTGCTCTATACC+AGG - chr7_3:15064946-15064965 Msa1094030:intron 35.0%
TGCAAAATTGCTCTATACCA+GGG - chr7_3:15064947-15064966 Msa1094030:intron 35.0%
AGAAAATAGAATCATGCTGG+AGG - chr7_3:15064998-15065017 Msa1094030:intron 35.0%
TATGTAAGTGTCCCTAACAT+AGG - chr7_3:15065044-15065063 Msa1094030:intron 35.0%
! TCCATTCTCATTTTCCTTGC+TGG - chr7_3:15062143-15062162 Msa1094030:three_prime_UTR 40.0%
ACCAGCAAGGAAAATGAGAA+TGG + chr7_3:15062147-15062166 None:intergenic 40.0%
! CGTGAAATGGGTTTCCAAAA+CGG + chr7_3:15062216-15062235 None:intergenic 40.0%
GGTTGGAACTTACGTGAAAT+GGG + chr7_3:15062228-15062247 None:intergenic 40.0%
ATAGCGAAGAAAGGTGAATC+GGG + chr7_3:15062249-15062268 None:intergenic 40.0%
GATAGCGAAGAAAGGTGAAT+CGG + chr7_3:15062250-15062269 None:intergenic 40.0%
GATTCACCTTTCTTCGCTAT+CGG - chr7_3:15062249-15062268 Msa1094030:three_prime_UTR 40.0%
ACGAGAACTTCTTGTCAAAC+AGG - chr7_3:15062281-15062300 Msa1094030:three_prime_UTR 40.0%
GCTTGAGGATTTGATACAAG+AGG - chr7_3:15062450-15062469 Msa1094030:three_prime_UTR 40.0%
GAGGATTTGATACAAGAGGA+TGG - chr7_3:15062454-15062473 Msa1094030:three_prime_UTR 40.0%
! AACCTTAATTTGGGTGGGTA+TGG - chr7_3:15062607-15062626 Msa1094030:CDS 40.0%
! TTAAGGAGGAGCATATTCCA+AGG + chr7_3:15062823-15062842 None:intergenic 40.0%
TTGGAATATGCTCCTCCTTA+AGG - chr7_3:15062822-15062841 Msa1094030:CDS 40.0%
GAATCGAATCAGAGACCTTA+AGG + chr7_3:15062840-15062859 None:intergenic 40.0%
GATTCTTCCCAGTGTCAATT+TGG - chr7_3:15062855-15062874 Msa1094030:intron 40.0%
GTTTGAATTCGCGGTAAGTT+TGG + chr7_3:15063261-15063280 None:intergenic 40.0%
ACTTACCGCGAATTCAAACA+TGG - chr7_3:15063262-15063281 Msa1094030:intron 40.0%
CACAATCTTCAACAAAGGTG+AGG + chr7_3:15063288-15063307 None:intergenic 40.0%
! GGGCGTTTCTTTTTGTTGAA+GGG + chr7_3:15064030-15064049 None:intergenic 40.0%
! TGGGCGTTTCTTTTTGTTGA+AGG + chr7_3:15064031-15064050 None:intergenic 40.0%
TGTTGGAATGTGGTGTGTTT+GGG + chr7_3:15064050-15064069 None:intergenic 40.0%
TTGTTGGAATGTGGTGTGTT+TGG + chr7_3:15064051-15064070 None:intergenic 40.0%
TTGTCAGAAGGTAGACCAAA+TGG - chr7_3:15064186-15064205 Msa1094030:intron 40.0%
CTCCCTTTACCTCTAACTAT+TGG + chr7_3:15064220-15064239 None:intergenic 40.0%
TAACCTCGTCTGATGAGAAA+AGG - chr7_3:15064349-15064368 Msa1094030:intron 40.0%
!! GAAGTATCCTCCTTTTGAGA+AGG + chr7_3:15064671-15064690 None:intergenic 40.0%
TCTCAAAAGGAGGATACTTC+AGG - chr7_3:15064671-15064690 Msa1094030:intron 40.0%
! TACTTCAGGAATGATGGAAG+TGG - chr7_3:15064685-15064704 Msa1094030:intron 40.0%
!! ATGACATGCCTTTGGTGTTA+CGG + chr7_3:15064796-15064815 None:intergenic 40.0%
TGGGCACAAAACCTATGTTA+GGG + chr7_3:15065058-15065077 None:intergenic 40.0%
ATGGGCACAAAACCTATGTT+AGG + chr7_3:15065059-15065078 None:intergenic 40.0%
GGGTTGGAACTTACGTGAAA+TGG + chr7_3:15062229-15062248 None:intergenic 45.0%
AGGTTACCGATAGCGAAGAA+AGG + chr7_3:15062258-15062277 None:intergenic 45.0%
TGACAAGAAGTTCTCGTTCG+AGG + chr7_3:15062278-15062297 None:intergenic 45.0%
ACAAGAGAAGGAACAGCTTG+AGG - chr7_3:15062435-15062454 Msa1094030:three_prime_UTR 45.0%
GGCTTATTCGACCTCAATCT+CGG - chr7_3:15062567-15062586 Msa1094030:CDS 45.0%
TGTCTCTACAACCGAGATTG+AGG + chr7_3:15062581-15062600 None:intergenic 45.0%
CACCATACCCACCCAAATTA+AGG + chr7_3:15062612-15062631 None:intergenic 45.0%
! CTTAATTTGGGTGGGTATGG+TGG - chr7_3:15062610-15062629 Msa1094030:CDS 45.0%
! GAATCGAATCTGAGACCTTG+AGG + chr7_3:15062669-15062688 None:intergenic 45.0%
GTCTCAGATTCGATTCTTCC+CGG - chr7_3:15062673-15062692 Msa1094030:CDS 45.0%
! ATTCTTCCCGGTGCCAATTT+GGG - chr7_3:15062685-15062704 Msa1094030:CDS 45.0%
TAGTACACCCAAATTGGCAC+CGG + chr7_3:15062695-15062714 None:intergenic 45.0%
ATAAGGCGTGCTAATTTGGG+TGG - chr7_3:15062775-15062794 Msa1094030:CDS 45.0%
TAAGGCGTGCTAATTTGGGT+GGG - chr7_3:15062776-15062795 Msa1094030:CDS 45.0%
TCGAATCAGAGACCTTAAGG+AGG + chr7_3:15062837-15062856 None:intergenic 45.0%
TTCCCAGTGTCAATTTGGGT+GGG - chr7_3:15062860-15062879 Msa1094030:intron 45.0%
TGAGGCCATGTTTGAATTCG+CGG + chr7_3:15063270-15063289 None:intergenic 45.0%
AAGTCTTCTGTCCCATTGCT+GGG - chr7_3:15063401-15063420 Msa1094030:intron 45.0%
!! GACTCTAGAACACACAGAAC+AGG + chr7_3:15063491-15063510 None:intergenic 45.0%
ATGCTGAGCAAACGTGATGT+GGG + chr7_3:15063517-15063536 None:intergenic 45.0%
TATGCTGAGCAAACGTGATG+TGG + chr7_3:15063518-15063537 None:intergenic 45.0%
TTTCAGGCAAAAGTTGCTCG+TGG - chr7_3:15063565-15063584 Msa1094030:intron 45.0%
! AAGCCTTTTCTCATCAGACG+AGG + chr7_3:15064355-15064374 None:intergenic 45.0%
CGTCTGATGAGAAAAGGCTT+TGG - chr7_3:15064355-15064374 Msa1094030:intron 45.0%
GAATGTTTAGTGGAAGGGTG+CGG - chr7_3:15064515-15064534 Msa1094030:intron 45.0%
CTCTGCCTTCAAAGAAACAC+AGG - chr7_3:15064624-15064643 Msa1094030:intron 45.0%
GGAGGATACTTCAGGAATGA+TGG - chr7_3:15064679-15064698 Msa1094030:intron 45.0%
GGAAGTGGAAAATGCAGCTA+TGG - chr7_3:15064700-15064719 Msa1094030:intron 45.0%
AGGGACAAATGACATGCCTT+TGG + chr7_3:15064804-15064823 None:intergenic 45.0%
CATCGCTAGTTCAACCAGCA+AGG + chr7_3:15062160-15062179 None:intergenic 50.0%
! CTTGCTGGTTGAACTAGCGA+TGG - chr7_3:15062158-15062177 Msa1094030:three_prime_UTR 50.0%
GGTTGAACTAGCGATGGAAG+TGG - chr7_3:15062164-15062183 Msa1094030:three_prime_UTR 50.0%
CGAAGAAAGGTGAATCGGGT+TGG + chr7_3:15062245-15062264 None:intergenic 50.0%
! ATCTGAGACCTTGAGGAGGA+GGG + chr7_3:15062662-15062681 None:intergenic 50.0%
! AATCTGAGACCTTGAGGAGG+AGG + chr7_3:15062663-15062682 None:intergenic 50.0%
! TCGAATCTGAGACCTTGAGG+AGG + chr7_3:15062666-15062685 None:intergenic 50.0%
! GATTCTTCCCGGTGCCAATT+TGG - chr7_3:15062684-15062703 Msa1094030:CDS 50.0%
AGTACACCCAAATTGGCACC+GGG + chr7_3:15062694-15062713 None:intergenic 50.0%
CTTCCCAGTGTCAATTTGGG+TGG - chr7_3:15062859-15062878 Msa1094030:intron 50.0%
AGCCCACCCAAATTGACACT+GGG + chr7_3:15062865-15062884 None:intergenic 50.0%
TAGCCCACCCAAATTGACAC+TGG + chr7_3:15062866-15062885 None:intergenic 50.0%
GAAGTCTTCTGTCCCATTGC+TGG - chr7_3:15063400-15063419 Msa1094030:intron 50.0%
TGCTGAGCAAACGTGATGTG+GGG + chr7_3:15063516-15063535 None:intergenic 50.0%
AGTTGCTCGTGGCTATGACA+TGG - chr7_3:15063576-15063595 Msa1094030:intron 50.0%
GGGAGACTAGAGAGAGCTAT+AGG - chr7_3:15064235-15064254 Msa1094030:intron 50.0%
AAAGCTGATGGAGGAAGGAG+TGG + chr7_3:15064768-15064787 None:intergenic 50.0%
ACTCCTTCCTCCATCAGCTT+TGG - chr7_3:15064767-15064786 Msa1094030:intron 50.0%
TTTGGTCGCCGTAACACCAA+AGG - chr7_3:15064785-15064804 Msa1094030:intron 50.0%
! TTGGGTGGGTATGGTGGTGT+TGG - chr7_3:15062616-15062635 Msa1094030:CDS 55.0%
! AGGAGGAGGGGCATATTCCA+AGG + chr7_3:15062649-15062668 None:intergenic 55.0%
GAATATGCCCCTCCTCCTCA+AGG - chr7_3:15062651-15062670 Msa1094030:CDS 55.0%
! TCTGAGACCTTGAGGAGGAG+GGG + chr7_3:15062661-15062680 None:intergenic 55.0%
TTCTGTCCCATTGCTGGGTG+TGG - chr7_3:15063406-15063425 Msa1094030:intron 55.0%
CGACCAAAGCTGATGGAGGA+AGG + chr7_3:15064773-15064792 None:intergenic 55.0%
GTTACGGCGACCAAAGCTGA+TGG + chr7_3:15064780-15064799 None:intergenic 55.0%
GCGCGGGAAGGGATCTAATT+CGG - chr7_3:15064835-15064854 Msa1094030:intron 55.0%
CGCGGGAAGGGATCTAATTC+GGG - chr7_3:15064836-15064855 Msa1094030:intron 55.0%
!! GTGGTGTTGGCTCGAGACCT+TGG - chr7_3:15062629-15062648 Msa1094030:CDS 60.0%
CGTGCTAATTTGGGTGGGCC+TGG - chr7_3:15062781-15062800 Msa1094030:CDS 60.0%
GCTAATTTGGGTGGGCCTGG+TGG - chr7_3:15062784-15062803 Msa1094030:CDS 60.0%
! TGGGCCTGGTGGTGTTTGCT+CGG - chr7_3:15062795-15062814 Msa1094030:CDS 60.0%
GTGGTGTTTGCTCGGGACCT+TGG - chr7_3:15062803-15062822 Msa1094030:CDS 60.0%
ACGGCGACCAAAGCTGATGG+AGG + chr7_3:15064777-15064796 None:intergenic 60.0%
! GGGCCTGGTGGTGTTTGCTC+GGG - chr7_3:15062796-15062815 Msa1094030:CDS 65.0%
GGTCCCGAGCAAACACCACC+AGG + chr7_3:15062802-15062821 None:intergenic 65.0%
CGCGCTCCACACCCAGCAAT+GGG + chr7_3:15063415-15063434 None:intergenic 65.0%
ACGCGCTCCACACCCAGCAA+TGG + chr7_3:15063416-15063435 None:intergenic 65.0%
TGCTGGGTGTGGAGCGCGTT+TGG - chr7_3:15063417-15063436 Msa1094030:intron 65.0%
GTCCCTCGAGCTGTTCAGCG+CGG - chr7_3:15064818-15064837 Msa1094030:intron 65.0%
TCCCTCGAGCTGTTCAGCGC+GGG - chr7_3:15064819-15064838 Msa1094030:intron 65.0%
TCCCGCGCTGAACAGCTCGA+GGG + chr7_3:15064823-15064842 None:intergenic 65.0%
TTCCCGCGCTGAACAGCTCG+AGG + chr7_3:15064824-15064843 None:intergenic 65.0%
TCGAGCTGTTCAGCGCGGGA+AGG - chr7_3:15064823-15064842 Msa1094030:intron 65.0%
CGAGCTGTTCAGCGCGGGAA+GGG - chr7_3:15064824-15064843 Msa1094030:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 15062070 15065303 15062070 ID=Msa1094030;Name=Msa1094030
chr7_3 mRNA 15062070 15065303 15062070 ID=Msa1094030-mRNA-1;Parent=Msa1094030;Name=Msa1094030-mRNA-1;_AED=0.29;_eAED=0.29;_QI=107|1|1|1|1|1|4|423|253
chr7_3 exon 15062070 15062861 15062070 ID=Msa1094030-mRNA-1:exon:3466;Parent=Msa1094030-mRNA-1
chr7_3 exon 15063776 15063974 15063776 ID=Msa1094030-mRNA-1:exon:3465;Parent=Msa1094030-mRNA-1
chr7_3 exon 15064894 15064961 15064894 ID=Msa1094030-mRNA-1:exon:3464;Parent=Msa1094030-mRNA-1
chr7_3 exon 15065071 15065303 15065071 ID=Msa1094030-mRNA-1:exon:3463;Parent=Msa1094030-mRNA-1
chr7_3 five_prime_UTR 15065197 15065303 15065197 ID=Msa1094030-mRNA-1:five_prime_utr;Parent=Msa1094030-mRNA-1
chr7_3 CDS 15065071 15065196 15065071 ID=Msa1094030-mRNA-1:cds;Parent=Msa1094030-mRNA-1
chr7_3 CDS 15064894 15064961 15064894 ID=Msa1094030-mRNA-1:cds;Parent=Msa1094030-mRNA-1
chr7_3 CDS 15063776 15063974 15063776 ID=Msa1094030-mRNA-1:cds;Parent=Msa1094030-mRNA-1
chr7_3 CDS 15062493 15062861 15062493 ID=Msa1094030-mRNA-1:cds;Parent=Msa1094030-mRNA-1
chr7_3 three_prime_UTR 15062070 15062492 15062070 ID=Msa1094030-mRNA-1:three_prime_utr;Parent=Msa1094030-mRNA-1
Gene Sequence

>Msa1094030

ATGGAAGTGGAAAATCAAAATCCGGATTCAAATTTTCCGTTTTGGAAACCCATTTCACGTAAGTTCCAACCCGATTCACCTTTCTTCGCTATCGGTAACCTCGAACGAGAACTTCTTGTCAAACAGGTTGCGTTGGAATTTGAATTAACACAAGAGAAGGAACAGCTTGAGGATTTGATACAAGAGGATGGAAGGGAAGTCTTCTGTCCCATTGCTGGGTGTGGAGCGCGTTTGGCTTCAATTGAGAATTTTGAAAATCACTATAATGCAAGACATACTGCATCCTGTTCTGTGTGTTCTAGAGTCTACCCCACATCACGTTTGCTCAGCATACATGTATCCGAAGCTCATGATTCTTTCTTTCAGGCAAAAGTTGCTCGTGGCTATGACATGTATGAATGTTTAGTGGAAGGGTGCGGTTTGAAATTCAAAAGCTACAAAAGTAGGCAGCAGCATCTAGTTGACAAGCATAAATTCCCGACGTCATTTGAGTTTTTCAAGAAGGCTCTGCCTTCAAAGAAACACAGGATAAAGTCTCAACGCAAAAAACCTTCTCAAAAGGAGGATACTTCAGGAATGATGGAAGTGGAAAATGCAGCTATGGATGACCTTGTTTCAGCAGTATCTAGATTAAATACTTCGGACACCACTCCTTCCTCCATCAGCTTTGGTCGCCGTAACACCAAAGGCATGTCATTTGTCCCTCGAGCTGTTCAGCGCGGGAAGGGATCTAATTCGGGCTCATCCGTTACTAAGAAATAA
Protein sequence

>Msa1094030

MEVENQNPDSNFPFWKPISRKFQPDSPFFAIGNLERELLVKQVALEFELTQEKEQLEDLIQEDGREVFCPIAGCGARLASIENFENHYNARHTASCSVCSRVYPTSRLLSIHVSEAHDSFFQAKVARGYDMYECLVEGCGLKFKSYKSRQQHLVDKHKFPTSFEFFKKALPSKKHRIKSQRKKPSQKEDTSGMMEVENAAMDDLVSAVSRLNTSDTTPSSISFGRRNTKGMSFVPRAVQRGKGSNSGSSVTKK*