AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1094370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1094370 MtrunA17_Chr6g0481041 65.541 148 39 1 1 136 1 148 4.46e-57 188
Msa1094370 MtrunA17_Chr7g0224481 64.706 136 36 2 1 136 1 124 4.89e-50 162
Msa1094370 MtrunA17_Chr7g0224451 64.706 136 36 2 1 136 1 124 3.92e-49 162
Msa1094370 MtrunA17_Chr5g0419821 60.504 119 46 1 19 136 35 153 1.67e-42 138
Msa1094370 MtrunA17_Chr7g0246631 56.667 120 52 0 17 136 91 210 2.22e-41 145
Msa1094370 MtrunA17_Chr8g0350321 55.833 120 53 0 17 136 115 234 1.27e-40 144
Msa1094370 MtrunA17_Chr4g0024351 49.635 137 67 1 2 136 43 179 4.87e-40 142
Msa1094370 MtrunA17_Chr1g0203671 55.000 120 54 0 17 136 95 214 2.92e-38 137
Msa1094370 MtrunA17_Chr5g0410711 52.941 119 55 1 19 136 91 209 5.66e-38 136
Msa1094370 MtrunA17_Chr2g0322731 54.237 118 54 0 19 136 102 219 6.08e-38 136
Msa1094370 MtrunA17_Chr6g0472471 49.138 116 59 0 21 136 73 188 1.06e-35 129
Msa1094370 MtrunA17_Chr2g0331581 48.305 118 59 1 21 136 143 260 2.18e-29 111
Msa1094370 MtrunA17_Chr5g0394111 36.283 113 71 1 24 136 40 151 1.27e-18 80.9
Msa1094370 MtrunA17_Chr3g0140351 34.821 112 51 3 20 109 20 131 1.06e-14 69.7
Msa1094370 MtrunA17_Chr4g0028991 32.174 115 68 3 3 107 9 123 8.64e-14 67.0
Msa1094370 MtrunA17_Chr2g0292391 35.106 94 46 2 16 94 9 102 8.36e-13 64.3
Msa1094370 MtrunA17_Chr8g0340411 35.577 104 59 2 11 106 6 109 8.31e-12 61.6
Msa1094370 MtrunA17_Chr2g0331131 37.778 90 41 2 20 94 14 103 2.47e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1094370 AT1G73360.1 66.949 118 39 0 19 136 34 151 1.66e-48 166
Msa1094370 AT1G17920.2 64.103 117 42 0 20 136 24 140 1.46e-45 157
Msa1094370 AT1G17920.1 64.103 117 42 0 20 136 24 140 1.46e-45 157
Msa1094370 AT4G00730.2 55.833 120 53 0 17 136 134 253 1.33e-41 145
Msa1094370 AT3G61150.1 55.932 118 52 0 19 136 112 229 2.24e-41 146
Msa1094370 AT4G00730.1 55.833 120 53 0 17 136 134 253 4.76e-41 145
Msa1094370 AT4G04890.2 55.085 118 53 0 19 136 64 181 3.14e-39 140
Msa1094370 AT4G04890.1 55.085 118 53 0 19 136 64 181 3.14e-39 140
Msa1094370 AT4G21750.2 55.932 118 52 0 19 136 64 181 7.37e-38 136
Msa1094370 AT4G21750.1 55.932 118 52 0 19 136 64 181 7.37e-38 136
Msa1094370 AT4G21750.3 55.932 118 52 0 19 136 64 181 7.37e-38 136
Msa1094370 AT4G21750.4 55.932 118 52 0 19 136 64 181 7.37e-38 136
Msa1094370 AT1G05230.12 55.085 118 53 0 19 136 66 183 2.76e-37 134
Msa1094370 AT1G05230.3 55.085 118 53 0 19 136 66 183 6.12e-37 133
Msa1094370 AT1G05230.8 55.085 118 53 0 19 136 66 183 6.45e-37 133
Msa1094370 AT1G05230.4 55.085 118 53 0 19 136 66 183 6.45e-37 133
Msa1094370 AT1G05230.9 55.085 118 53 0 19 136 66 183 6.45e-37 133
Msa1094370 AT1G05230.10 55.085 118 53 0 19 136 66 183 6.45e-37 133
Msa1094370 AT1G05230.7 55.085 118 53 0 19 136 66 183 6.45e-37 133
Msa1094370 AT1G05230.11 55.085 118 53 0 19 136 66 183 6.45e-37 133
Msa1094370 AT1G05230.2 55.085 118 53 0 19 136 66 183 6.45e-37 133
Msa1094370 AT1G05230.6 55.085 118 53 0 19 136 66 183 6.45e-37 133
Msa1094370 AT1G05230.5 55.085 118 53 0 19 136 66 183 6.45e-37 133
Msa1094370 AT1G05230.1 55.085 118 53 0 19 136 66 183 6.45e-37 133
Msa1094370 AT3G03260.2 55.652 115 50 1 22 135 28 142 2.04e-33 122
Msa1094370 AT3G03260.1 55.652 115 50 1 22 135 28 142 3.91e-33 122
Msa1094370 AT5G52170.3 49.138 116 59 0 21 136 61 176 8.66e-33 121
Msa1094370 AT5G52170.1 49.138 116 59 0 21 136 61 176 8.66e-33 121
Msa1094370 AT5G52170.2 49.138 116 59 0 21 136 61 176 8.90e-33 121
Msa1094370 AT5G46880.3 49.153 118 58 1 19 136 113 228 6.85e-31 116
Msa1094370 AT5G46880.1 49.153 118 58 1 19 136 113 228 6.85e-31 116
Msa1094370 AT5G46880.2 49.153 118 58 1 19 136 113 228 6.85e-31 116
Msa1094370 AT2G32370.1 44.361 133 74 0 4 136 55 187 5.09e-30 114
Msa1094370 AT5G17320.1 49.624 133 65 2 6 136 14 146 3.98e-29 111
Msa1094370 AT1G79840.5 47.500 120 52 2 19 136 103 213 8.45e-28 107
Msa1094370 AT1G79840.1 47.500 120 52 2 19 136 103 213 9.49e-28 107
Msa1094370 AT1G79840.4 45.669 127 58 2 12 136 96 213 1.08e-27 107
Msa1094370 AT1G79840.3 47.500 120 52 2 19 136 45 155 1.13e-27 107
Msa1094370 AT1G79840.6 47.500 120 52 2 19 136 45 155 1.13e-27 107
Msa1094370 AT1G79840.2 47.500 120 52 2 19 136 132 242 1.68e-27 106
Msa1094370 AT4G17710.1 44.068 118 54 1 19 136 90 195 6.59e-27 105
Msa1094370 AT1G34650.1 46.018 113 61 0 24 136 23 135 1.68e-23 95.5
Msa1094370 AT4G25530.1 34.146 123 81 0 14 136 37 159 9.08e-17 76.3
Msa1094370 AT1G30490.1 28.571 154 89 4 1 137 2 151 1.60e-14 69.7
Msa1094370 AT4G32880.1 36.893 103 50 2 7 94 2 104 1.23e-12 64.3
Msa1094370 AT5G60690.1 31.746 126 64 3 3 106 8 133 1.80e-12 63.9
Msa1094370 AT1G52150.1 37.778 90 41 2 20 94 17 106 2.79e-11 60.5
Msa1094370 AT1G52150.3 37.778 90 41 2 20 94 17 106 2.83e-11 60.5
Msa1094370 AT1G52150.2 37.778 90 41 2 20 94 17 106 3.10e-11 60.1

Find 23 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTTGGTTTCAGAATAAA+AGG 0.220895 7_3:+15981336 Msa1094370:CDS
CTCCTAGACAGATTGATGTT+TGG 0.363835 7_3:+15981321 Msa1094370:CDS
AAATCACAATCAACATTGAT+TGG 0.400197 7_3:-15982304 None:intergenic
AACATAGGTTGCAGTTAAGC+AGG 0.427466 7_3:+15981285 Msa1094370:CDS
CTTCTAATACAGATTATATG+AGG 0.451700 7_3:+15981099 Msa1094370:CDS
GAATAAAAGGGCTCAGATGA+AGG 0.502319 7_3:+15981349 Msa1094370:CDS
ATCTGAGAATATAGCTATGA+GGG 0.523034 7_3:+15982240 Msa1094370:CDS
ACACTCCTCGTCAGATTCAA+AGG 0.528470 7_3:+15981141 Msa1094370:CDS
AAGCAGACACGAGAAGAAAG+AGG 0.531686 7_3:+15982178 Msa1094370:intron
GATCTGAGAATATAGCTATG+AGG 0.531988 7_3:+15982239 Msa1094370:CDS
CACATCCTTGTGAACAACAT+AGG 0.537997 7_3:+15981270 Msa1094370:CDS
AACCAAACATCAATCTGTCT+AGG 0.586256 7_3:-15981323 None:intergenic
TCACAATCAACATTGATTGG+AGG 0.587576 7_3:-15982301 None:intergenic
TGTTTGGTTTCAGAATAAAA+GGG 0.598282 7_3:+15981337 Msa1094370:CDS
ATCAATCTGTCTAGGAGACA+AGG 0.602937 7_3:-15981315 None:intergenic
AAATGCTCAACTCAAAGAAG+AGG 0.603990 7_3:+15982351 Msa1094370:CDS
TGCAACCTATGTTGTTCACA+AGG 0.621373 7_3:-15981275 None:intergenic
CTTATGGAGCATCACAGTGA+AGG 0.621938 7_3:+15981068 None:intergenic
ACATAGGTTGCAGTTAAGCA+GGG 0.638853 7_3:+15981286 Msa1094370:CDS
TCAAGCCTTTGAATCTGACG+AGG 0.643299 7_3:-15981146 None:intergenic
AATGTTATCTGCAGCACTTG+TGG 0.647495 7_3:+15982274 Msa1094370:CDS
GAATCTGACGAGGAGTGTGA+CGG 0.662551 7_3:-15981136 None:intergenic
GTTATCTGCAGCACTTGTGG+TGG 0.684640 7_3:+15982277 Msa1094370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTCTTTTTATTTTATTTTTC+AGG + chr7_3:15981231-15981250 Msa1094370:intron 15.0%
!!! GTTATAAATTTTAGATGATT+TGG + chr7_3:15981379-15981398 Msa1094370:intron 15.0%
!! GATTATTACATTGAATTATA+TGG + chr7_3:15981514-15981533 Msa1094370:intron 15.0%
!!! GTCTTTTTATTTTATTTTTC+AGG + chr7_3:15981231-15981250 Msa1094370:intron 15.0%
!!! GTTATAAATTTTAGATGATT+TGG + chr7_3:15981379-15981398 Msa1094370:intron 15.0%
!! GATTATTACATTGAATTATA+TGG + chr7_3:15981514-15981533 Msa1094370:intron 15.0%
!!! TGGTTTTCTTAAATTTTTAG+TGG + chr7_3:15981534-15981553 Msa1094370:intron 20.0%
!!! GATTTTATACAATTTTGTGT+CGG + chr7_3:15981625-15981644 Msa1094370:intron 20.0%
!!! AATATGTGCTCTTTTTTTTA+AGG + chr7_3:15981926-15981945 Msa1094370:intron 20.0%
!!! ATTTACATGCAGAATTTTAA+TGG + chr7_3:15982432-15982451 Msa1094370:intron 20.0%
!!! TGGTTTTCTTAAATTTTTAG+TGG + chr7_3:15981534-15981553 Msa1094370:intron 20.0%
!!! GATTTTATACAATTTTGTGT+CGG + chr7_3:15981625-15981644 Msa1094370:intron 20.0%
!!! AATATGTGCTCTTTTTTTTA+AGG + chr7_3:15981926-15981945 Msa1094370:intron 20.0%
!!! ATTTACATGCAGAATTTTAA+TGG + chr7_3:15982432-15982451 Msa1094370:intron 20.0%
! CTTCTAATACAGATTATATG+AGG + chr7_3:15981099-15981118 Msa1094370:CDS 25.0%
!! ATGTTTGGTTTCAGAATAAA+AGG + chr7_3:15981336-15981355 Msa1094370:CDS 25.0%
!! TGTTTGGTTTCAGAATAAAA+GGG + chr7_3:15981337-15981356 Msa1094370:CDS 25.0%
! AATGTAATAATCATATGTGC+CGG - chr7_3:15981506-15981525 None:intergenic 25.0%
!!! TCTTAAATTTTTAGTGGTGT+CGG + chr7_3:15981540-15981559 Msa1094370:intron 25.0%
!!! GACTTTGAACAATTTTTCAA+CGG + chr7_3:15981739-15981758 Msa1094370:intron 25.0%
! CCATAAAAAAAAGTTCAGAT+GGG - chr7_3:15982090-15982109 None:intergenic 25.0%
!! TATTTTACAACGATTCTTTG+TGG + chr7_3:15982141-15982160 Msa1094370:intron 25.0%
! AAATCACAATCAACATTGAT+TGG - chr7_3:15982307-15982326 None:intergenic 25.0%
!! CACAAATATTTTGCATAAGT+GGG - chr7_3:15982399-15982418 None:intergenic 25.0%
!! ACACAAATATTTTGCATAAG+TGG - chr7_3:15982400-15982419 None:intergenic 25.0%
! CTTCTAATACAGATTATATG+AGG + chr7_3:15981099-15981118 Msa1094370:CDS 25.0%
!! ATGTTTGGTTTCAGAATAAA+AGG + chr7_3:15981336-15981355 Msa1094370:CDS 25.0%
!! TGTTTGGTTTCAGAATAAAA+GGG + chr7_3:15981337-15981356 Msa1094370:CDS 25.0%
! AATGTAATAATCATATGTGC+CGG - chr7_3:15981506-15981525 None:intergenic 25.0%
!!! TCTTAAATTTTTAGTGGTGT+CGG + chr7_3:15981540-15981559 Msa1094370:intron 25.0%
!!! GACTTTGAACAATTTTTCAA+CGG + chr7_3:15981739-15981758 Msa1094370:intron 25.0%
! CCATAAAAAAAAGTTCAGAT+GGG - chr7_3:15982090-15982109 None:intergenic 25.0%
!! TATTTTACAACGATTCTTTG+TGG + chr7_3:15982141-15982160 Msa1094370:intron 25.0%
! AAATCACAATCAACATTGAT+TGG - chr7_3:15982307-15982326 None:intergenic 25.0%
!! CACAAATATTTTGCATAAGT+GGG - chr7_3:15982399-15982418 None:intergenic 25.0%
!! ACACAAATATTTTGCATAAG+TGG - chr7_3:15982400-15982419 None:intergenic 25.0%
! TTGTGTGTTTCTATGAAACT+AGG + chr7_3:15981429-15981448 Msa1094370:intron 30.0%
AGGTTGACTAAAAATTAGAG+TGG - chr7_3:15981992-15982011 None:intergenic 30.0%
!!! CCCATCTGAACTTTTTTTTA+TGG + chr7_3:15982087-15982106 Msa1094370:intron 30.0%
GCCATAAAAAAAAGTTCAGA+TGG - chr7_3:15982091-15982110 None:intergenic 30.0%
CATATAACAATCTCATGTAG+TGG - chr7_3:15982118-15982137 None:intergenic 30.0%
ATCTGAGAATATAGCTATGA+GGG + chr7_3:15982240-15982259 Msa1094370:CDS 30.0%
! GCTGCAGATAACATTTTTAA+GGG - chr7_3:15982269-15982288 None:intergenic 30.0%
! TGCTGCAGATAACATTTTTA+AGG - chr7_3:15982270-15982289 None:intergenic 30.0%
! ATTTTGCATAAGTGGGTATT+TGG - chr7_3:15982392-15982411 None:intergenic 30.0%
! TTGTGTGTTTCTATGAAACT+AGG + chr7_3:15981429-15981448 Msa1094370:intron 30.0%
AGGTTGACTAAAAATTAGAG+TGG - chr7_3:15981992-15982011 None:intergenic 30.0%
!!! CCCATCTGAACTTTTTTTTA+TGG + chr7_3:15982087-15982106 Msa1094370:intron 30.0%
GCCATAAAAAAAAGTTCAGA+TGG - chr7_3:15982091-15982110 None:intergenic 30.0%
CATATAACAATCTCATGTAG+TGG - chr7_3:15982118-15982137 None:intergenic 30.0%
ATCTGAGAATATAGCTATGA+GGG + chr7_3:15982240-15982259 Msa1094370:CDS 30.0%
! GCTGCAGATAACATTTTTAA+GGG - chr7_3:15982269-15982288 None:intergenic 30.0%
! TGCTGCAGATAACATTTTTA+AGG - chr7_3:15982270-15982289 None:intergenic 30.0%
! ATTTTGCATAAGTGGGTATT+TGG - chr7_3:15982392-15982411 None:intergenic 30.0%
AACCAAACATCAATCTGTCT+AGG - chr7_3:15981326-15981345 None:intergenic 35.0%
TTTGGATCCTATAACTCAAG+TGG + chr7_3:15981397-15981416 Msa1094370:intron 35.0%
TTGGATCCTATAACTCAAGT+GGG + chr7_3:15981398-15981417 Msa1094370:intron 35.0%
TCGTTAATTCCTATGAAGCA+CGG - chr7_3:15981594-15981613 None:intergenic 35.0%
TGATCAAAATTCTCGCAAAG+TGG + chr7_3:15981662-15981681 Msa1094370:intron 35.0%
! TCAACGGTTATAGTTTTCCA+CGG + chr7_3:15981755-15981774 Msa1094370:intron 35.0%
TGTAGAACTTCGAATTTGCA+CGG + chr7_3:15981822-15981841 Msa1094370:intron 35.0%
TTCAGTTGAGAGACAATATG+CGG - chr7_3:15981861-15981880 None:intergenic 35.0%
CTCAACTGAAAATTCTCTCT+CGG + chr7_3:15981871-15981890 Msa1094370:intron 35.0%
TACGTACGAAGTTGAAATGA+CGG - chr7_3:15982015-15982034 None:intergenic 35.0%
ATAACAATCTCATGTAGTGG+CGG - chr7_3:15982115-15982134 None:intergenic 35.0%
! ACAACGATTCTTTGTGGTTT+TGG + chr7_3:15982147-15982166 Msa1094370:intron 35.0%
GATCTGAGAATATAGCTATG+AGG + chr7_3:15982239-15982258 Msa1094370:CDS 35.0%
! TCACAATCAACATTGATTGG+AGG - chr7_3:15982304-15982323 None:intergenic 35.0%
AAATGCTCAACTCAAAGAAG+AGG + chr7_3:15982351-15982370 Msa1094370:CDS 35.0%
AACCAAACATCAATCTGTCT+AGG - chr7_3:15981326-15981345 None:intergenic 35.0%
TTTGGATCCTATAACTCAAG+TGG + chr7_3:15981397-15981416 Msa1094370:intron 35.0%
TTGGATCCTATAACTCAAGT+GGG + chr7_3:15981398-15981417 Msa1094370:intron 35.0%
TCGTTAATTCCTATGAAGCA+CGG - chr7_3:15981594-15981613 None:intergenic 35.0%
TGATCAAAATTCTCGCAAAG+TGG + chr7_3:15981662-15981681 Msa1094370:intron 35.0%
! TCAACGGTTATAGTTTTCCA+CGG + chr7_3:15981755-15981774 Msa1094370:intron 35.0%
TGTAGAACTTCGAATTTGCA+CGG + chr7_3:15981822-15981841 Msa1094370:intron 35.0%
TTCAGTTGAGAGACAATATG+CGG - chr7_3:15981861-15981880 None:intergenic 35.0%
CTCAACTGAAAATTCTCTCT+CGG + chr7_3:15981871-15981890 Msa1094370:intron 35.0%
TACGTACGAAGTTGAAATGA+CGG - chr7_3:15982015-15982034 None:intergenic 35.0%
ATAACAATCTCATGTAGTGG+CGG - chr7_3:15982115-15982134 None:intergenic 35.0%
! ACAACGATTCTTTGTGGTTT+TGG + chr7_3:15982147-15982166 Msa1094370:intron 35.0%
GATCTGAGAATATAGCTATG+AGG + chr7_3:15982239-15982258 Msa1094370:CDS 35.0%
! TCACAATCAACATTGATTGG+AGG - chr7_3:15982304-15982323 None:intergenic 35.0%
AAATGCTCAACTCAAAGAAG+AGG + chr7_3:15982351-15982370 Msa1094370:CDS 35.0%
CACATCCTTGTGAACAACAT+AGG + chr7_3:15981270-15981289 Msa1094370:CDS 40.0%
TGCAACCTATGTTGTTCACA+AGG - chr7_3:15981278-15981297 None:intergenic 40.0%
AACATAGGTTGCAGTTAAGC+AGG + chr7_3:15981285-15981304 Msa1094370:CDS 40.0%
ACATAGGTTGCAGTTAAGCA+GGG + chr7_3:15981286-15981305 Msa1094370:CDS 40.0%
ATCAATCTGTCTAGGAGACA+AGG - chr7_3:15981318-15981337 None:intergenic 40.0%
CTCCTAGACAGATTGATGTT+TGG + chr7_3:15981321-15981340 Msa1094370:CDS 40.0%
GAATAAAAGGGCTCAGATGA+AGG + chr7_3:15981349-15981368 Msa1094370:CDS 40.0%
TCTACACCCACTTGAGTTAT+AGG - chr7_3:15981407-15981426 None:intergenic 40.0%
ACTAGGACACTTCTCGAATT+AGG + chr7_3:15981446-15981465 Msa1094370:intron 40.0%
GTAATAATCATATGTGCCGG+TGG - chr7_3:15981503-15981522 None:intergenic 40.0%
GTACAGACACAGACATTACA+CGG - chr7_3:15981571-15981590 None:intergenic 40.0%
CGTTAATTCCTATGAAGCAC+GGG - chr7_3:15981593-15981612 None:intergenic 40.0%
!!! GTATGTCACTTTTGAAACCG+TGG - chr7_3:15981775-15981794 None:intergenic 40.0%
! CGTGATTTTTGTGATGCTAG+CGG + chr7_3:15981794-15981813 Msa1094370:intron 40.0%
TCAGTTGAGAGACAATATGC+GGG - chr7_3:15981860-15981879 None:intergenic 40.0%
AATGTTATCTGCAGCACTTG+TGG + chr7_3:15982274-15982293 Msa1094370:CDS 40.0%
CACATCCTTGTGAACAACAT+AGG + chr7_3:15981270-15981289 Msa1094370:CDS 40.0%
TGCAACCTATGTTGTTCACA+AGG - chr7_3:15981278-15981297 None:intergenic 40.0%
AACATAGGTTGCAGTTAAGC+AGG + chr7_3:15981285-15981304 Msa1094370:CDS 40.0%
ACATAGGTTGCAGTTAAGCA+GGG + chr7_3:15981286-15981305 Msa1094370:CDS 40.0%
ATCAATCTGTCTAGGAGACA+AGG - chr7_3:15981318-15981337 None:intergenic 40.0%
CTCCTAGACAGATTGATGTT+TGG + chr7_3:15981321-15981340 Msa1094370:CDS 40.0%
GAATAAAAGGGCTCAGATGA+AGG + chr7_3:15981349-15981368 Msa1094370:CDS 40.0%
TCTACACCCACTTGAGTTAT+AGG - chr7_3:15981407-15981426 None:intergenic 40.0%
ACTAGGACACTTCTCGAATT+AGG + chr7_3:15981446-15981465 Msa1094370:intron 40.0%
GTAATAATCATATGTGCCGG+TGG - chr7_3:15981503-15981522 None:intergenic 40.0%
GTACAGACACAGACATTACA+CGG - chr7_3:15981571-15981590 None:intergenic 40.0%
CGTTAATTCCTATGAAGCAC+GGG - chr7_3:15981593-15981612 None:intergenic 40.0%
!!! GTATGTCACTTTTGAAACCG+TGG - chr7_3:15981775-15981794 None:intergenic 40.0%
! CGTGATTTTTGTGATGCTAG+CGG + chr7_3:15981794-15981813 Msa1094370:intron 40.0%
TCAGTTGAGAGACAATATGC+GGG - chr7_3:15981860-15981879 None:intergenic 40.0%
AATGTTATCTGCAGCACTTG+TGG + chr7_3:15982274-15982293 Msa1094370:CDS 40.0%
ACACTCCTCGTCAGATTCAA+AGG + chr7_3:15981141-15981160 Msa1094370:CDS 45.0%
TCAAGCCTTTGAATCTGACG+AGG - chr7_3:15981149-15981168 None:intergenic 45.0%
ATTCTCGCAAAGTGGTGTAG+TGG + chr7_3:15981670-15981689 Msa1094370:intron 45.0%
GTACGAAGTTGAAATGACGG+AGG - chr7_3:15982012-15982031 None:intergenic 45.0%
AAGCAGACACGAGAAGAAAG+AGG + chr7_3:15982178-15982197 Msa1094370:intron 45.0%
ACACTCCTCGTCAGATTCAA+AGG + chr7_3:15981141-15981160 Msa1094370:CDS 45.0%
TCAAGCCTTTGAATCTGACG+AGG - chr7_3:15981149-15981168 None:intergenic 45.0%
ATTCTCGCAAAGTGGTGTAG+TGG + chr7_3:15981670-15981689 Msa1094370:intron 45.0%
GTACGAAGTTGAAATGACGG+AGG - chr7_3:15982012-15982031 None:intergenic 45.0%
AAGCAGACACGAGAAGAAAG+AGG + chr7_3:15982178-15982197 Msa1094370:intron 45.0%
!! ATAAAACAAAAATTAATAAA+GGG - chr7_3:15981208-15981227 None:intergenic 5.0%
!! TATAAAACAAAAATTAATAA+AGG - chr7_3:15981209-15981228 None:intergenic 5.0%
!!! TTATTAATTTTTGTTTTATA+TGG + chr7_3:15981209-15981228 Msa1094370:intron 5.0%
!!! TTGAAATATTTAAATTTTTT+GGG - chr7_3:15981700-15981719 None:intergenic 5.0%
!!! ATTGAAATATTTAAATTTTT+TGG - chr7_3:15981701-15981720 None:intergenic 5.0%
!!! TATATTATAATTAATTTTAG+TGG + chr7_3:15982064-15982083 Msa1094370:intron 5.0%
!! ATAAAACAAAAATTAATAAA+GGG - chr7_3:15981208-15981227 None:intergenic 5.0%
!! TATAAAACAAAAATTAATAA+AGG - chr7_3:15981209-15981228 None:intergenic 5.0%
!!! TTATTAATTTTTGTTTTATA+TGG + chr7_3:15981209-15981228 Msa1094370:intron 5.0%
!!! TTGAAATATTTAAATTTTTT+GGG - chr7_3:15981700-15981719 None:intergenic 5.0%
!!! ATTGAAATATTTAAATTTTT+TGG - chr7_3:15981701-15981720 None:intergenic 5.0%
!!! TATATTATAATTAATTTTAG+TGG + chr7_3:15982064-15982083 Msa1094370:intron 5.0%
! GAATCTGACGAGGAGTGTGA+CGG - chr7_3:15981139-15981158 None:intergenic 50.0%
! AATCATATGTGCCGGTGGTG+TGG - chr7_3:15981498-15981517 None:intergenic 50.0%
TGTCTGTACCCGTGCTTCAT+AGG + chr7_3:15981582-15981601 Msa1094370:intron 50.0%
GTTATCTGCAGCACTTGTGG+TGG + chr7_3:15982277-15982296 Msa1094370:CDS 50.0%
! GAATCTGACGAGGAGTGTGA+CGG - chr7_3:15981139-15981158 None:intergenic 50.0%
! AATCATATGTGCCGGTGGTG+TGG - chr7_3:15981498-15981517 None:intergenic 50.0%
TGTCTGTACCCGTGCTTCAT+AGG + chr7_3:15981582-15981601 Msa1094370:intron 50.0%
GTTATCTGCAGCACTTGTGG+TGG + chr7_3:15982277-15982296 Msa1094370:CDS 50.0%
! CGGTGGTGTGGTGTTAGTGA+CGG - chr7_3:15981486-15981505 None:intergenic 55.0%
CGTCACTAACACCACACCAC+CGG + chr7_3:15981484-15981503 Msa1094370:intron 55.0%
! CGGTGGTGTGGTGTTAGTGA+CGG - chr7_3:15981486-15981505 None:intergenic 55.0%
CGTCACTAACACCACACCAC+CGG + chr7_3:15981484-15981503 Msa1094370:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 15981071 15982458 15981071 ID=Msa1094370;Name=Msa1094370
chr7_3 mRNA 15981071 15982458 15981071 ID=Msa1094370-mRNA-1;Parent=Msa1094370;Name=Msa1094370-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|0.75|1|1|4|0|140
chr7_3 exon 15981071 15981171 15981071 ID=Msa1094370-mRNA-1:exon:3568;Parent=Msa1094370-mRNA-1
chr7_3 exon 15981253 15981370 15981253 ID=Msa1094370-mRNA-1:exon:3569;Parent=Msa1094370-mRNA-1
chr7_3 exon 15982184 15982372 15982184 ID=Msa1094370-mRNA-1:exon:3570;Parent=Msa1094370-mRNA-1
chr7_3 exon 15982444 15982458 15982444 ID=Msa1094370-mRNA-1:exon:3571;Parent=Msa1094370-mRNA-1
chr7_3 CDS 15981071 15981171 15981071 ID=Msa1094370-mRNA-1:cds;Parent=Msa1094370-mRNA-1
chr7_3 CDS 15981253 15981370 15981253 ID=Msa1094370-mRNA-1:cds;Parent=Msa1094370-mRNA-1
chr7_3 CDS 15982184 15982372 15982184 ID=Msa1094370-mRNA-1:cds;Parent=Msa1094370-mRNA-1
chr7_3 CDS 15982444 15982458 15982444 ID=Msa1094370-mRNA-1:cds;Parent=Msa1094370-mRNA-1
Gene Sequence

>Msa1094370

ATGGAGCATCACAGTGAAGGAAGTGTTTCTTCTAATACAGATTATATGAGGATCAAACGTTACAACCGTCACACTCCTCGTCAGATTCAAAGGCTTGAAGCGCTGTTTAAAGATTGTTCACATCCTTGTGAACAACATAGGTTGCAGTTAAGCAGGGAATTAGCCTTGTCTCCTAGACAGATTGATGTTTGGTTTCAGAATAAAAGGGCTCAGATGAAGACACGAGAAGAAAGAGGTGATAACTCTAAACTCATAGAAGAGAATGATAAAATAAGATCTGAGAATATAGCTATGAGGGAAGCCCTTAAAAATGTTATCTGCAGCACTTGTGGTGGTCCTCCAATCAATGTTGATTGTGATTTTGATGAACAAAAGTTGATCATTGAAAATGCTCAACTCAAAGAAGAGAATTTTAATGGTTAA
Protein sequence

>Msa1094370

MEHHSEGSVSSNTDYMRIKRYNRHTPRQIQRLEALFKDCSHPCEQHRLQLSRELALSPRQIDVWFQNKRAQMKTREERGDNSKLIEENDKIRSENIAMREALKNVICSTCGGPPINVDCDFDEQKLIIENAQLKEENFNG*