AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1094440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1094440 MtrunA17_Chr7g0224271 98.516 674 10 0 1 674 1 674 0.0 1384
Msa1094440 MtrunA17_Chr4g0057891 41.604 399 211 6 288 674 133 521 1.37e-96 307
Msa1094440 MtrunA17_Chr8g0376381 41.895 401 191 10 284 673 153 522 1.70e-94 302
Msa1094440 MtrunA17_Chr2g0306641 42.250 400 190 10 290 674 115 488 2.44e-93 298
Msa1094440 MtrunA17_Chr3g0110971 35.878 524 268 13 184 673 98 587 4.74e-93 300
Msa1094440 MtrunA17_Chr7g0245601 41.910 377 186 6 304 673 442 792 2.09e-92 304
Msa1094440 MtrunA17_Chr8g0357601 40.863 394 206 6 292 673 174 552 2.62e-88 286
Msa1094440 MtrunA17_Chr5g0447691 40.204 393 205 5 293 673 170 544 3.59e-88 286
Msa1094440 MtrunA17_Chr4g0057291 38.303 389 217 7 294 672 286 661 4.20e-82 273
Msa1094440 MtrunA17_Chr1g0159461 39.589 389 201 6 299 673 224 592 6.71e-81 268
Msa1094440 MtrunA17_Chr2g0319091 36.490 433 239 5 258 672 164 578 5.36e-79 262
Msa1094440 MtrunA17_Chr3g0101141 32.914 556 295 10 162 673 21 542 1.52e-78 260
Msa1094440 MtrunA17_Chr4g0038761 38.710 372 209 6 304 673 88 442 1.86e-78 257
Msa1094440 MtrunA17_Chr5g0445331 33.623 461 266 7 233 673 92 532 5.10e-78 258
Msa1094440 MtrunA17_Chr3g0125811 37.629 388 210 5 299 673 202 570 1.02e-75 253
Msa1094440 MtrunA17_Chr4g0076091 36.132 393 220 5 295 674 170 544 1.67e-71 241
Msa1094440 MtrunA17_Chr2g0290241 33.915 401 218 8 295 674 52 426 1.48e-69 233
Msa1094440 MtrunA17_Chr4g0031721 34.000 400 234 6 286 672 301 683 2.75e-65 228
Msa1094440 MtrunA17_Chr1g0183641 35.128 390 224 10 290 674 113 478 5.68e-65 222
Msa1094440 MtrunA17_Chr5g0424131 36.930 417 210 17 288 674 107 500 8.80e-65 222
Msa1094440 MtrunA17_Chr1g0200401 34.140 413 220 14 290 673 70 459 6.71e-64 219
Msa1094440 MtrunA17_Chr3g0114841 37.101 407 219 14 290 674 110 501 1.41e-63 219
Msa1094440 MtrunA17_Chr3g0085681 30.140 428 227 5 301 673 26 436 8.65e-62 212
Msa1094440 MtrunA17_Chr7g0238891 32.398 392 234 5 295 673 367 740 4.25e-59 212
Msa1094440 MtrunA17_Chr4g0031701 31.910 398 234 5 291 670 245 623 1.00e-58 209
Msa1094440 MtrunA17_Chr4g0031731 31.910 398 234 5 291 670 245 623 1.16e-57 206
Msa1094440 MtrunA17_Chr2g0328341 31.105 389 239 6 295 672 267 637 6.37e-57 204
Msa1094440 MtrunA17_Chr2g0328391 31.807 393 237 6 294 672 293 668 9.91e-57 204
Msa1094440 MtrunA17_Chr4g0031741 31.714 391 234 7 295 672 279 649 1.56e-56 203
Msa1094440 MtrunA17_Chr4g0031711 31.671 401 237 7 290 672 351 732 2.54e-55 201
Msa1094440 MtrunA17_Chr2g0328381 30.591 389 241 6 295 672 270 640 3.08e-55 199
Msa1094440 MtrunA17_Chr2g0328411 29.771 393 242 5 293 672 282 653 3.06e-54 197
Msa1094440 MtrunA17_Chr2g0328431 30.227 397 235 8 293 672 282 653 2.79e-51 188
Msa1094440 MtrunA17_Chr4g0039661 34.232 371 207 8 316 673 209 555 6.95e-51 185
Msa1094440 MtrunA17_Chr2g0294461 31.683 404 246 10 286 673 196 585 2.68e-49 182
Msa1094440 MtrunA17_Chr3g0085361 30.747 348 181 5 381 673 8 350 2.39e-48 173
Msa1094440 MtrunA17_Chr5g0401131 31.343 402 237 12 293 673 107 490 4.54e-48 176
Msa1094440 MtrunA17_Chr2g0294471 29.703 404 251 11 286 673 190 576 1.59e-46 174
Msa1094440 MtrunA17_Chr2g0328401 28.212 358 225 5 295 640 285 622 2.59e-45 171
Msa1094440 MtrunA17_Chr2g0328361 28.351 388 226 7 295 672 269 614 8.09e-45 169
Msa1094440 MtrunA17_Chr7g0270031 29.723 397 253 9 286 673 175 554 2.84e-44 167
Msa1094440 MtrunA17_Chr8g0383981 32.426 404 221 15 287 672 126 495 5.34e-42 159
Msa1094440 MtrunA17_Chr2g0328371 34.286 245 150 4 387 620 1 245 3.48e-41 150
Msa1094440 MtrunA17_Chr1g0194621 28.571 406 265 11 283 673 123 518 3.86e-41 157
Msa1094440 MtrunA17_Chr5g0396491 36.797 231 124 2 289 516 45 256 5.89e-40 153
Msa1094440 MtrunA17_Chr5g0396491 43.333 150 85 0 525 674 330 479 5.06e-39 150
Msa1094440 MtrunA17_Chr4g0038851 44.595 148 82 0 526 673 322 469 1.70e-39 151
Msa1094440 MtrunA17_Chr4g0038851 35.088 228 132 2 289 516 37 248 1.06e-34 137
Msa1094440 MtrunA17_Chr7g0236851 34.007 297 175 8 392 672 365 656 1.70e-38 151
Msa1094440 MtrunA17_Chr7g0230771 29.124 388 238 11 297 674 372 732 9.31e-36 144
Msa1094440 MtrunA17_Chr7g0230731 29.124 388 238 11 297 674 369 729 5.69e-35 141
Msa1094440 MtrunA17_Chr6g0468561 29.136 405 217 13 301 673 296 662 1.34e-33 137
Msa1094440 MtrunA17_Chr2g0329591 26.329 395 253 10 300 673 74 451 5.79e-33 132
Msa1094440 MtrunA17_Chr4g0053901 25.714 420 254 9 300 672 59 467 1.80e-32 131
Msa1094440 MtrunA17_Chr4g0012071 28.238 386 235 12 301 674 197 552 6.76e-32 130
Msa1094440 MtrunA17_Chr5g0401421 25.592 422 254 12 300 672 35 445 2.84e-31 127
Msa1094440 MtrunA17_Chr8g0373561 26.972 393 243 14 297 674 179 542 2.05e-28 120
Msa1094440 MtrunA17_Chr8g0344101 23.587 407 251 12 299 673 222 600 1.44e-19 93.2
Msa1094440 MtrunA17_Chr2g0323111 26.286 175 120 3 505 672 133 305 5.46e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1094440 AT1G66350.1 44.103 390 184 11 291 674 146 507 1.07e-97 310
Msa1094440 AT3G03450.1 42.092 392 198 8 291 673 174 545 4.01e-95 304
Msa1094440 AT3G54220.1 41.709 398 196 6 285 672 278 649 1.09e-92 301
Msa1094440 AT1G14920.1 40.712 393 197 9 291 673 163 529 4.05e-90 291
Msa1094440 AT5G17490.1 42.967 391 190 10 291 673 151 516 3.05e-89 288
Msa1094440 AT2G01570.1 40.458 393 198 10 291 673 215 581 4.15e-87 285
Msa1094440 AT5G41920.1 40.759 395 202 9 287 673 30 400 1.14e-86 278
Msa1094440 AT2G04890.1 39.949 393 209 5 287 673 42 413 3.78e-84 271
Msa1094440 AT5G48150.1 39.481 385 204 5 301 673 123 490 4.42e-83 271
Msa1094440 AT5G48150.4 39.481 385 204 5 301 673 123 490 4.42e-83 271
Msa1094440 AT5G48150.2 39.481 385 204 5 301 673 123 490 4.42e-83 271
Msa1094440 AT5G48150.3 39.481 385 204 5 301 673 123 490 4.42e-83 271
Msa1094440 AT1G50600.3 38.560 389 209 6 297 673 156 526 1.55e-73 247
Msa1094440 AT1G50600.1 39.075 389 207 7 297 673 227 597 4.91e-73 247
Msa1094440 AT1G50600.2 38.560 389 209 6 297 673 231 601 5.88e-73 247
Msa1094440 AT1G21450.1 36.434 387 217 4 299 673 224 593 2.20e-72 245
Msa1094440 AT1G55580.1 37.438 406 226 8 296 673 40 445 9.64e-72 239
Msa1094440 AT4G17230.1 36.061 391 220 4 295 673 153 525 4.51e-68 232
Msa1094440 AT4G17230.2 36.061 391 220 4 295 673 153 525 4.51e-68 232
Msa1094440 AT1G63100.1 34.596 396 227 7 295 672 247 628 2.09e-67 233
Msa1094440 AT1G63100.2 34.596 396 227 7 295 672 272 653 5.13e-67 233
Msa1094440 AT1G07520.2 31.841 402 246 7 286 672 140 528 2.37e-59 209
Msa1094440 AT1G07520.4 31.841 402 246 7 286 672 140 528 2.37e-59 209
Msa1094440 AT1G07520.3 31.841 402 246 7 286 672 305 693 8.55e-59 211
Msa1094440 AT1G07520.1 31.841 402 246 7 286 672 304 692 9.12e-59 211
Msa1094440 AT3G46600.1 30.326 399 246 5 288 673 200 579 2.92e-57 204
Msa1094440 AT5G59450.1 29.442 394 246 6 295 673 222 598 3.60e-57 204
Msa1094440 AT3G46600.3 30.326 399 246 5 288 673 168 547 6.45e-57 202
Msa1094440 AT3G46600.2 30.670 388 237 5 299 673 3 371 1.97e-56 196
Msa1094440 AT1G07530.1 31.538 390 235 6 297 672 393 764 2.57e-55 202
Msa1094440 AT2G29065.1 29.820 389 244 7 300 672 252 627 9.56e-55 198
Msa1094440 AT5G66770.1 35.038 391 217 10 297 673 217 584 1.15e-53 194
Msa1094440 AT2G29060.2 30.612 392 238 7 297 672 281 654 7.33e-53 193
Msa1094440 AT2G29060.1 30.612 392 238 7 297 672 318 691 1.17e-52 193
Msa1094440 AT2G37650.2 30.827 399 229 7 295 673 330 701 2.18e-52 193
Msa1094440 AT2G37650.1 31.078 399 228 8 295 673 342 713 2.26e-52 193
Msa1094440 AT4G08250.1 32.432 407 228 14 288 672 95 476 2.64e-49 180
Msa1094440 AT3G50650.1 33.962 371 205 9 320 673 195 542 4.24e-46 172
Msa1094440 AT4G37650.1 29.397 398 243 10 300 673 146 529 2.02e-43 164
Msa1094440 AT5G52510.1 30.250 400 224 9 301 673 269 640 5.34e-40 156
Msa1094440 AT1G50420.1 45.333 150 82 0 525 674 331 480 6.69e-39 150
Msa1094440 AT1G50420.1 38.496 226 125 2 291 516 48 259 5.98e-38 147
Msa1094440 AT3G49950.1 28.678 401 237 10 299 672 29 407 3.94e-33 132
Msa1094440 AT4G00150.1 27.431 401 238 13 282 674 200 555 2.37e-28 120
Msa1094440 AT2G45160.1 27.829 327 204 9 367 674 327 640 2.38e-28 121
Msa1094440 AT3G60630.1 28.852 305 191 10 388 674 327 623 9.74e-28 119
Msa1094440 AT4G36710.1 26.972 393 252 11 292 673 117 485 1.54e-27 117
Msa1094440 AT3G13840.1 24.557 395 245 14 300 673 148 510 1.93e-14 77.0

Find 155 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCCAATATCAACAATTT+TGG 0.134391 7_3:-16206333 Msa1094440:CDS
TGTTGCATATATTGATTATT+TGG 0.203768 7_3:+16206464 None:intergenic
GTAGAAGCTTGTGGTGAATT+AGG 0.209436 7_3:+16206644 None:intergenic
CTATCCAAAATTGTTGATAT+TGG 0.238972 7_3:+16206329 None:intergenic
GACTCAATCAAGGATATTAT+TGG 0.253341 7_3:-16204575 Msa1094440:CDS
GGCAAGCTTGGTAGACAATT+TGG 0.255349 7_3:+16205301 None:intergenic
TGTATTCATGTGATGGTTAC+AGG 0.259318 7_3:-16204549 Msa1094440:CDS
AATAGTAATAACCAACAAAA+AGG 0.261319 7_3:-16206524 Msa1094440:CDS
TGCCTCAAACGCCTCGAAAA+TGG 0.275785 7_3:+16205242 None:intergenic
GCCAGCTATTGAAGAGTTCT+TGG 0.285111 7_3:-16206423 Msa1094440:CDS
TTAGGGTTAATGTTTCTAAT+TGG 0.288688 7_3:+16206662 None:intergenic
GATGGTAAGTTTAGGCTTTG+TGG 0.292426 7_3:+16206791 None:intergenic
TAGAAGCTTGTGGTGAATTA+GGG 0.297220 7_3:+16206645 None:intergenic
GACATGAGAGGTTGGAGAAA+TGG 0.307042 7_3:-16204654 Msa1094440:CDS
CTTGATTGAGTCACTGCATT+AGG 0.311878 7_3:+16204586 None:intergenic
GTATCATCAAATGGGATCTA+TGG 0.314373 7_3:-16206201 Msa1094440:CDS
TCATGAAATCATTATCTAAA+TGG 0.317694 7_3:+16206693 None:intergenic
AACCGTCTCCACCGTGTTCC+TGG 0.336032 7_3:-16204937 Msa1094440:CDS
TTGATGATGACTTGGTTGTT+AGG 0.342078 7_3:+16205418 None:intergenic
GGTCTCTTATCATGGATAAC+AGG 0.350431 7_3:+16204899 None:intergenic
ACTCAATCAAGGATATTATT+GGG 0.352700 7_3:-16204574 Msa1094440:CDS
ATTTGTTTGATTTGAAGAAT+TGG 0.357982 7_3:+16206877 None:intergenic
TCCTCAAGTTGTTCTCCAAC+AGG 0.371000 7_3:+16205018 None:intergenic
TGGTGCTTGGTCTCTTATCA+TGG 0.378979 7_3:+16204891 None:intergenic
ATAAAGGTTGTTTGTTGCTT+GGG 0.381702 7_3:-16204516 Msa1094440:CDS
GTCACTGCATTAGGACTTAG+AGG 0.385725 7_3:+16204595 None:intergenic
CTAACAGTTCCTATTCCAAT+TGG 0.386725 7_3:-16206098 Msa1094440:CDS
GATAAAGGTTGTTTGTTGCT+TGG 0.388205 7_3:-16204517 Msa1094440:CDS
CCATGCAGAAGCAGCGATAA+TGG 0.390323 7_3:+16204480 None:intergenic
GCTTCCCACATTGAACTATC+TGG 0.392042 7_3:+16206728 None:intergenic
TTTGTTTGATTTGAAGAATT+GGG 0.395359 7_3:+16206878 None:intergenic
CCGGCGGTGCTCCGTTCCTT+AGG 0.397678 7_3:-16205137 Msa1094440:CDS
AGGACTTCCATAGGGTTTGA+TGG 0.398057 7_3:+16205333 None:intergenic
AATGCAAAGCCTCGAGAAAT+CGG 0.401833 7_3:+16204812 None:intergenic
GCCAATGCCTGCATGAATGC+AGG 0.402364 7_3:+16205168 None:intergenic
ATGCAAATTCAAAGCCTATC+AGG 0.406320 7_3:-16206587 Msa1094440:CDS
CAGGCCATTGGTAGCCTTGA+AGG 0.407502 7_3:+16205187 None:intergenic
TACAGGTTAACTGAGGATAA+AGG 0.412392 7_3:-16204532 Msa1094440:CDS
CAGGCATTGGCTGCACGGCC+CGG 0.413918 7_3:-16205156 Msa1094440:CDS
CACAAGCTTTACAACAAGAA+AGG 0.417444 7_3:-16206163 Msa1094440:CDS
ATTTGAGAGATGGTAAGTTT+AGG 0.417615 7_3:+16206783 None:intergenic
TGATGATGACTTGGTTGTTA+GGG 0.418899 7_3:+16205419 None:intergenic
ATCGACCTTGATATCCTTCA+AGG 0.423493 7_3:-16205201 Msa1094440:CDS
GAGTGATATGTATCATCAAA+TGG 0.430639 7_3:-16206210 Msa1094440:CDS
TCCACAAGTGTCACTATGTT+TGG 0.431028 7_3:+16204871 None:intergenic
ATATATTTGCACCGGAGATT+CGG 0.433485 7_3:-16204714 Msa1094440:CDS
CCTAAGGAACGGAGCACCGC+CGG 0.433800 7_3:+16205137 None:intergenic
TCCTTAGGATCACTGGAGTT+GGG 0.435193 7_3:-16205122 Msa1094440:CDS
CTCGAAAATGGCTTGGTTAG+CGG 0.435294 7_3:+16205254 None:intergenic
ATCGAATCGGTTAGGGAAAC+CGG 0.437086 7_3:-16205093 Msa1094440:CDS
TCATGCAGGCATTGGCTGCA+CGG 0.438295 7_3:-16205161 Msa1094440:CDS
GGCCGTGCATCGAATCGGTT+AGG 0.440216 7_3:-16205101 Msa1094440:CDS
GGAGAAATGGAGGAAGATAA+TGG 0.442415 7_3:-16204641 Msa1094440:CDS
TAAATCACCACAAGAATTTG+TGG 0.443098 7_3:+16206835 None:intergenic
AAAATGATGAATTCACTTTG+TGG 0.443783 7_3:-16206935 Msa1094440:CDS
ATTACCTGCTCAATTCCAAT+TGG 0.449064 7_3:+16206083 None:intergenic
TTCCTTAGGATCACTGGAGT+TGG 0.451123 7_3:-16205123 Msa1094440:CDS
GTGTTCCTGGCAATCATCTC+GGG 0.453444 7_3:-16204924 Msa1094440:CDS
GATAGAGAGACATGAGAGGT+TGG 0.454325 7_3:-16204662 Msa1094440:CDS
CAAAATTCTTCAAGCTATTG+TGG 0.454394 7_3:-16206296 Msa1094440:CDS
TGCTCAATTCCAATTGGAAT+AGG 0.456239 7_3:+16206089 None:intergenic
TACTGCTCTACCTTAGCCCT+TGG 0.456368 7_3:+16204736 None:intergenic
AGCAAGAAGCAAGCCATAAC+GGG 0.462121 7_3:-16204849 Msa1094440:CDS
GCCACGATGTTCCGAATCTC+CGG 0.464344 7_3:+16204703 None:intergenic
CCGTGTAGGCGAGGCTTTGG+CGG 0.466492 7_3:-16204971 Msa1094440:CDS
CGTGTTCCTGGCAATCATCT+CGG 0.467483 7_3:-16204925 Msa1094440:CDS
CGAGGCTTTGCATTACTACT+CGG 0.469216 7_3:-16204803 Msa1094440:CDS
ACATTGAACTATCTGGTGAT+TGG 0.469373 7_3:+16206735 None:intergenic
ATGAGAGGTTGGAGAAATGG+AGG 0.478165 7_3:-16204651 Msa1094440:CDS
TCCAAGAACTCTTCAATAGC+TGG 0.478205 7_3:+16206422 None:intergenic
AACACGGTGGAGACGGTTAA+CGG 0.479130 7_3:+16204942 None:intergenic
GCTCCGTTCCTTAGGATCAC+TGG 0.483442 7_3:-16205129 Msa1094440:CDS
TATTCCAATTGGAATTGAGC+AGG 0.485481 7_3:-16206087 Msa1094440:intron
GTGTTACTACTTTATTGAGC+TGG 0.486255 7_3:+16205511 None:intergenic
TTCCATAGGGTTTGATGGGA+AGG 0.488537 7_3:+16205338 None:intergenic
GCCTGCATTCATGCAGGCAT+TGG 0.492416 7_3:-16205169 Msa1094440:CDS
TCCCTAACCGATTCGATGCA+CGG 0.492832 7_3:+16205099 None:intergenic
CCCTTCGAGTTCCACCCTGT+TGG 0.500773 7_3:-16205033 Msa1094440:CDS
GTGTCACTATGTTTGGTGCT+TGG 0.501545 7_3:+16204878 None:intergenic
CCGCCAAAGCCTCGCCTACA+CGG 0.501971 7_3:+16204971 None:intergenic
TAACTCTGTTAAGCATCGTC+CGG 0.502256 7_3:+16205074 None:intergenic
AGTGATATGTATCATCAAAT+GGG 0.505152 7_3:-16206209 Msa1094440:CDS
TACCTTCCCATCAAACCCTA+TGG 0.506323 7_3:-16205340 Msa1094440:CDS
TCCTGTGGAGTCAGCACCAA+GGG 0.507337 7_3:-16204752 Msa1094440:CDS
GGAAGATAATGGAAGGGAAA+GGG 0.523029 7_3:-16204630 Msa1094440:CDS
AGTTGGGCCGTGCATCGAAT+CGG 0.524300 7_3:-16205106 Msa1094440:CDS
GCCCTTGGTGCTGACTCCAC+AGG 0.524463 7_3:+16204751 None:intergenic
GCATTGGCTGCACGGCCCGG+CGG 0.530002 7_3:-16205153 Msa1094440:CDS
CCAATGGCCTGCATTCATGC+AGG 0.532300 7_3:-16205175 Msa1094440:CDS
TAGATCTTGAGGACTTCCAT+AGG 0.534706 7_3:+16205324 None:intergenic
TGCCAGGAACACGGTGGAGA+CGG 0.538538 7_3:+16204935 None:intergenic
AGAATCTCTAAGTGCAAGAC+TGG 0.538771 7_3:-16205448 Msa1094440:CDS
GGTAGATAAACATGATGAAG+AGG 0.540118 7_3:+16205359 None:intergenic
GGACTTCCATAGGGTTTGAT+GGG 0.540263 7_3:+16205334 None:intergenic
CTAATGCAGTGACTCAATCA+AGG 0.544135 7_3:-16204585 Msa1094440:CDS
TTGGGTTTGTATTCATGTGA+TGG 0.544918 7_3:-16204556 Msa1094440:CDS
CGGAACATCGTGGCATGTGA+AGG 0.545048 7_3:-16204694 Msa1094440:CDS
CTACTTTATTGAGCTGGTGT+AGG 0.548195 7_3:+16205517 None:intergenic
AGACAATTTGGTAGATCTTG+AGG 0.549770 7_3:+16205313 None:intergenic
AAGGTTGTTTGTTGCTTGGG+TGG 0.550029 7_3:-16204513 Msa1094440:CDS
TCTAAGTCAAATTTGAGAGA+TGG 0.550529 7_3:+16206773 None:intergenic
AGATCTTGAGGACTTCCATA+GGG 0.551151 7_3:+16205325 None:intergenic
CAAACGCCTCGAAAATGGCT+TGG 0.554574 7_3:+16205247 None:intergenic
GAGCAAGAAGCAAGCCATAA+CGG 0.555779 7_3:-16204850 Msa1094440:CDS
GGAGTCAGCACCAAGGGCTA+AGG 0.557086 7_3:-16204746 Msa1094440:CDS
GCCCAACTCCAGTGATCCTA+AGG 0.558573 7_3:+16205121 None:intergenic
TGTAACTATAACTATGCTCA+AGG 0.559054 7_3:-16206611 Msa1094440:CDS
GGTAGCCTTGAAGGATATCA+AGG 0.560859 7_3:+16205196 None:intergenic
ATGGAAGGGAAAGGGTTCAA+AGG 0.562746 7_3:-16204622 Msa1094440:CDS
GGATATCAAGGTCGATGACA+TGG 0.564199 7_3:+16205208 None:intergenic
AGGTTCCCGAGATGATTGCC+AGG 0.564807 7_3:+16204919 None:intergenic
GCCGTGCATCGAATCGGTTA+GGG 0.568254 7_3:-16205100 Msa1094440:CDS
CCAACAGGGTGGAACTCGAA+GGG 0.569813 7_3:+16205033 None:intergenic
AAATGGAGGAAGATAATGGA+AGG 0.574690 7_3:-16204637 Msa1094440:CDS
GAGGTGGTGAACAACCTGAT+AGG 0.574741 7_3:+16206573 None:intergenic
CCATTATCGCTGCTTCTGCA+TGG 0.581952 7_3:-16204480 Msa1094440:CDS
ACATGAAGCTACTCTTTGCA+TGG 0.581987 7_3:+16205476 None:intergenic
CCTGCATGAATGCAGGCCAT+TGG 0.587372 7_3:+16205175 None:intergenic
GTTTAACCGCCGTGTAGGCG+AGG 0.587763 7_3:-16204980 Msa1094440:CDS
GTGAATACATGCTAGCAAGA+AGG 0.591113 7_3:-16205542 Msa1094440:CDS
TCCAACAGGGTGGAACTCGA+AGG 0.593188 7_3:+16205032 None:intergenic
TGTGCTGAAGCAGTGGCAAA+AGG 0.593207 7_3:-16205564 Msa1094440:CDS
GAATTAAATACTCTATGAAG+TGG 0.597232 7_3:+16206488 None:intergenic
CCCTGTTGGAGAACAACTTG+AGG 0.601784 7_3:-16205019 Msa1094440:CDS
TCTAGCATGTGCTGAAGCAG+TGG 0.602572 7_3:-16205571 Msa1094440:CDS
CGAGATGATTGCCAGGAACA+CGG 0.603757 7_3:+16204926 None:intergenic
ATCACCAGATAGTTCAATGT+GGG 0.605621 7_3:-16206732 Msa1094440:CDS
ATATCCTTCAAGGCTACCAA+TGG 0.609017 7_3:-16205191 Msa1094440:CDS
AGAGGATAGAGAGACATGAG+AGG 0.611332 7_3:-16204666 Msa1094440:CDS
AGGAAGATAATGGAAGGGAA+AGG 0.613642 7_3:-16204631 Msa1094440:CDS
CATCGTGGCATGTGAAGGTG+AGG 0.614548 7_3:-16204689 Msa1094440:CDS
CTTTGCATGGAGTCACCTAG+TGG 0.624018 7_3:+16205489 None:intergenic
AGAGCAGTATATATTTGCAC+CGG 0.624565 7_3:-16204722 Msa1094440:CDS
TTCCTGTGGAGTCAGCACCA+AGG 0.627178 7_3:-16204753 Msa1094440:CDS
AATGGAGGAAGATAATGGAA+GGG 0.644464 7_3:-16204636 Msa1094440:CDS
CCTCAAGTTGTTCTCCAACA+GGG 0.648235 7_3:+16205019 None:intergenic
ATTTGACTTAGATGTTGATG+TGG 0.651519 7_3:-16206762 Msa1094440:CDS
AATAAAGTAGTAACACCACT+AGG 0.659108 7_3:-16205504 Msa1094440:CDS
CACATGTTTAACCGCCGTGT+AGG 0.660169 7_3:-16204985 Msa1094440:CDS
GATGACGATGATAACGATGA+TGG 0.665670 7_3:+16205381 None:intergenic
ACTCCAGTGATCCTAAGGAA+CGG 0.672214 7_3:+16205126 None:intergenic
CAACAGGGTGGAACTCGAAG+GGG 0.673995 7_3:+16205034 None:intergenic
ACACGGCGGTTAAACATGTG+CGG 0.674730 7_3:+16204988 None:intergenic
TGGCATGTGAAGGTGAGGAG+AGG 0.683443 7_3:-16204684 Msa1094440:CDS
ACCAAACATAGTGACACTTG+TGG 0.687522 7_3:-16204872 Msa1094440:CDS
TATATGTAGGAACAAGACAG+TGG 0.702151 7_3:-16205615 Msa1094440:intron
TTATTGTAAGTAGAAGCTTG+TGG 0.706364 7_3:+16206635 None:intergenic
CCAATTTGTGATGCAAAACG+AGG 0.711917 7_3:+16206554 None:intergenic
AATCACCAGATAGTTCAATG+TGG 0.716750 7_3:-16206733 Msa1094440:CDS
TGATGGTTACAGGTTAACTG+AGG 0.719493 7_3:-16204539 Msa1094440:CDS
CAAGTTGTTCTCCAACAGGG+TGG 0.720607 7_3:+16205022 None:intergenic
ATTTGTGATGCAAAACGAGG+TGG 0.735195 7_3:+16206557 None:intergenic
ACCGGAGATTCGGAACATCG+TGG 0.740006 7_3:-16204704 Msa1094440:CDS
GATGATTGCCAGGAACACGG+TGG 0.742020 7_3:+16204929 None:intergenic
CCAAAGCCTCGCCTACACGG+CGG 0.759718 7_3:+16204974 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAATTAATTAAGATTTT+AGG + chr7_3:16205371-16205390 None:intergenic 10.0%
!! TTAAATATTTAATACAGAAA+TGG + chr7_3:16205667-16205686 None:intergenic 10.0%
!! TATGTTAATTTATTCAGTTA+GGG + chr7_3:16205415-16205434 None:intergenic 15.0%
!! TTATGTTAATTTATTCAGTT+AGG + chr7_3:16205416-16205435 None:intergenic 15.0%
!!! TTTGTTTGATTTGAAGAATT+GGG + chr7_3:16204528-16204547 None:intergenic 20.0%
!!! ATTTGTTTGATTTGAAGAAT+TGG + chr7_3:16204529-16204548 None:intergenic 20.0%
!! TCATGAAATCATTATCTAAA+TGG + chr7_3:16204713-16204732 None:intergenic 20.0%
!! AATAGTAATAACCAACAAAA+AGG - chr7_3:16204879-16204898 Msa1094440:CDS 20.0%
!! ATAGTAATAACCAACAAAAA+GGG - chr7_3:16204880-16204899 Msa1094440:CDS 20.0%
!!! TGTTGCATATATTGATTATT+TGG + chr7_3:16204942-16204961 None:intergenic 20.0%
!! ATATTTAATACAGAAATGGA+AGG + chr7_3:16205663-16205682 None:intergenic 20.0%
!! GCTATATATCTAATATATGT+AGG - chr7_3:16205775-16205794 Msa1094440:intron 20.0%
!! TTAGGGTTAATGTTTCTAAT+TGG + chr7_3:16204744-16204763 None:intergenic 25.0%
! GAATTAAATACTCTATGAAG+TGG + chr7_3:16204918-16204937 None:intergenic 25.0%
!! AACTCCAATATCAACAATTT+TGG - chr7_3:16205070-16205089 Msa1094440:CDS 25.0%
! CTATCCAAAATTGTTGATAT+TGG + chr7_3:16205077-16205096 None:intergenic 25.0%
! AGTGATATGTATCATCAAAT+GGG - chr7_3:16205194-16205213 Msa1094440:CDS 25.0%
!!! TTTTAGGTGAAAAAAGACAA+AGG + chr7_3:16205355-16205374 None:intergenic 25.0%
! TTAATTTATTCAGTTAGGGA+GGG + chr7_3:16205411-16205430 None:intergenic 25.0%
! ATTGGTTATGTAATCCATAA+AGG - chr7_3:16205609-16205628 Msa1094440:CDS 25.0%
!! AGTGTGCAAATTTTATGTAA+GGG + chr7_3:16206126-16206145 None:intergenic 25.0%
!! AAGTGTGCAAATTTTATGTA+AGG + chr7_3:16206127-16206146 None:intergenic 25.0%
! ACTCAATCAAGGATATTATT+GGG - chr7_3:16206829-16206848 Msa1094440:CDS 25.0%
AAAAATGCCACAAATTCTTG+TGG - chr7_3:16204561-16204580 Msa1094440:CDS 30.0%
TAAATCACCACAAGAATTTG+TGG + chr7_3:16204571-16204590 None:intergenic 30.0%
ATTTGAGAGATGGTAAGTTT+AGG + chr7_3:16204623-16204642 None:intergenic 30.0%
TCTAAGTCAAATTTGAGAGA+TGG + chr7_3:16204633-16204652 None:intergenic 30.0%
! ATTTGACTTAGATGTTGATG+TGG - chr7_3:16204641-16204660 Msa1094440:CDS 30.0%
TTATTGTAAGTAGAAGCTTG+TGG + chr7_3:16204771-16204790 None:intergenic 30.0%
TGTAACTATAACTATGCTCA+AGG - chr7_3:16204792-16204811 Msa1094440:CDS 30.0%
AATAACCAACAAAAAGGGAA+AGG - chr7_3:16204885-16204904 Msa1094440:CDS 30.0%
!! TGATCACTTTTCATCAACAA+AGG - chr7_3:16205022-16205041 Msa1094440:CDS 30.0%
!!! TTCTTCTGAATGTTTTGACA+TGG - chr7_3:16205046-16205065 Msa1094440:CDS 30.0%
CAAAATTCTTCAAGCTATTG+TGG - chr7_3:16205107-16205126 Msa1094440:CDS 30.0%
! GAAGAATCTACTATTTTGCA+TGG - chr7_3:16205140-16205159 Msa1094440:CDS 30.0%
GAGTGATATGTATCATCAAA+TGG - chr7_3:16205193-16205212 Msa1094440:CDS 30.0%
TAATTTATTCAGTTAGGGAG+GGG + chr7_3:16205410-16205429 None:intergenic 30.0%
GTTAATTTATTCAGTTAGGG+AGG + chr7_3:16205412-16205431 None:intergenic 30.0%
TGTAATCCATAAAGGAATAG+TGG - chr7_3:16205617-16205636 Msa1094440:intron 30.0%
AATAAAGTAGTAACACCACT+AGG - chr7_3:16205899-16205918 Msa1094440:intron 30.0%
GACTCAATCAAGGATATTAT+TGG - chr7_3:16206828-16206847 Msa1094440:CDS 30.0%
! ATAAAGGTTGTTTGTTGCTT+GGG - chr7_3:16206887-16206906 Msa1094440:CDS 30.0%
ACATTGAACTATCTGGTGAT+TGG + chr7_3:16204671-16204690 None:intergenic 35.0%
AATCACCAGATAGTTCAATG+TGG - chr7_3:16204670-16204689 Msa1094440:CDS 35.0%
ATCACCAGATAGTTCAATGT+GGG - chr7_3:16204671-16204690 Msa1094440:CDS 35.0%
TAGAAGCTTGTGGTGAATTA+GGG + chr7_3:16204761-16204780 None:intergenic 35.0%
ATGCAAATTCAAAGCCTATC+AGG - chr7_3:16204816-16204835 Msa1094440:CDS 35.0%
! TAAGTCCTTTCCCTTTTTGT+TGG + chr7_3:16204893-16204912 None:intergenic 35.0%
! GAGTTCTTGGAAGATTTTCA+AGG - chr7_3:16204993-16205012 Msa1094440:CDS 35.0%
! GAATCTACTATTTTGCATGG+TGG - chr7_3:16205143-16205162 Msa1094440:CDS 35.0%
GTATCATCAAATGGGATCTA+TGG - chr7_3:16205202-16205221 Msa1094440:CDS 35.0%
CACAAGCTTTACAACAAGAA+AGG - chr7_3:16205240-16205259 Msa1094440:CDS 35.0%
! GCATCTTTTGATGTTTCTCT+TGG + chr7_3:16205268-16205287 None:intergenic 35.0%
CTAACAGTTCCTATTCCAAT+TGG - chr7_3:16205305-16205324 Msa1094440:CDS 35.0%
TGCTCAATTCCAATTGGAAT+AGG + chr7_3:16205317-16205336 None:intergenic 35.0%
TATTCCAATTGGAATTGAGC+AGG - chr7_3:16205316-16205335 Msa1094440:CDS 35.0%
ATTACCTGCTCAATTCCAAT+TGG + chr7_3:16205323-16205342 None:intergenic 35.0%
! GTCTAAAGTCATGATTGATG+CGG - chr7_3:16205486-16205505 Msa1094440:CDS 35.0%
CACAAGATCATGCATAACAA+TGG - chr7_3:16205550-16205569 Msa1094440:CDS 35.0%
GGTCGTTAGATTTACGATAT+TGG - chr7_3:16205591-16205610 Msa1094440:CDS 35.0%
TATATGTAGGAACAAGACAG+TGG - chr7_3:16205788-16205807 Msa1094440:intron 35.0%
! GTGTTACTACTTTATTGAGC+TGG + chr7_3:16205895-16205914 None:intergenic 35.0%
!! TGATGATGACTTGGTTGTTA+GGG + chr7_3:16205987-16206006 None:intergenic 35.0%
!! TTGATGATGACTTGGTTGTT+AGG + chr7_3:16205988-16206007 None:intergenic 35.0%
!!! CTTTTTGGTTGATGATGACT+TGG + chr7_3:16205996-16206015 None:intergenic 35.0%
!! CGATGATGGTGTTAACTTTT+TGG + chr7_3:16206011-16206030 None:intergenic 35.0%
GGTAGATAAACATGATGAAG+AGG + chr7_3:16206047-16206066 None:intergenic 35.0%
AGACAATTTGGTAGATCTTG+AGG + chr7_3:16206093-16206112 None:intergenic 35.0%
! ATTTTATGTAAGGGCAAGCT+TGG + chr7_3:16206117-16206136 None:intergenic 35.0%
AGAGCAGTATATATTTGCAC+CGG - chr7_3:16206681-16206700 Msa1094440:CDS 35.0%
ATATATTTGCACCGGAGATT+CGG - chr7_3:16206689-16206708 Msa1094440:CDS 35.0%
!! AAATGGAGGAAGATAATGGA+AGG - chr7_3:16206766-16206785 Msa1094440:CDS 35.0%
!! AATGGAGGAAGATAATGGAA+GGG - chr7_3:16206767-16206786 Msa1094440:CDS 35.0%
TTGGGTTTGTATTCATGTGA+TGG - chr7_3:16206847-16206866 Msa1094440:CDS 35.0%
TGTATTCATGTGATGGTTAC+AGG - chr7_3:16206854-16206873 Msa1094440:CDS 35.0%
TACAGGTTAACTGAGGATAA+AGG - chr7_3:16206871-16206890 Msa1094440:CDS 35.0%
! GATAAAGGTTGTTTGTTGCT+TGG - chr7_3:16206886-16206905 Msa1094440:CDS 35.0%
GATGGTAAGTTTAGGCTTTG+TGG + chr7_3:16204615-16204634 None:intergenic 40.0%
GTAGAAGCTTGTGGTGAATT+AGG + chr7_3:16204762-16204781 None:intergenic 40.0%
ATTTGTGATGCAAAACGAGG+TGG + chr7_3:16204849-16204868 None:intergenic 40.0%
CCAATTTGTGATGCAAAACG+AGG + chr7_3:16204852-16204871 None:intergenic 40.0%
! CCTCGTTTTGCATCACAAAT+TGG - chr7_3:16204849-16204868 Msa1094440:CDS 40.0%
TCCAAGAACTCTTCAATAGC+TGG + chr7_3:16204984-16205003 None:intergenic 40.0%
TCTAACGACCATAGACATTG+AGG + chr7_3:16205581-16205600 None:intergenic 40.0%
GTGAATACATGCTAGCAAGA+AGG - chr7_3:16205861-16205880 Msa1094440:intron 40.0%
CTACTTTATTGAGCTGGTGT+AGG + chr7_3:16205889-16205908 None:intergenic 40.0%
ACATGAAGCTACTCTTTGCA+TGG + chr7_3:16205930-16205949 None:intergenic 40.0%
AGAATCTCTAAGTGCAAGAC+TGG - chr7_3:16205955-16205974 Msa1094440:intron 40.0%
! GATGACGATGATAACGATGA+TGG + chr7_3:16206025-16206044 None:intergenic 40.0%
AGATCTTGAGGACTTCCATA+GGG + chr7_3:16206081-16206100 None:intergenic 40.0%
TAGATCTTGAGGACTTCCAT+AGG + chr7_3:16206082-16206101 None:intergenic 40.0%
ATCGACCTTGATATCCTTCA+AGG - chr7_3:16206202-16206221 Msa1094440:CDS 40.0%
ATATCCTTCAAGGCTACCAA+TGG - chr7_3:16206212-16206231 Msa1094440:CDS 40.0%
! TAACTCTGTTAAGCATCGTC+CGG + chr7_3:16206332-16206351 None:intergenic 40.0%
GGTCTCTTATCATGGATAAC+AGG + chr7_3:16206507-16206526 None:intergenic 40.0%
ACCAAACATAGTGACACTTG+TGG - chr7_3:16206531-16206550 Msa1094440:CDS 40.0%
! TCCACAAGTGTCACTATGTT+TGG + chr7_3:16206535-16206554 None:intergenic 40.0%
AGAAATCGGCCCAAAAAGTA+CGG + chr7_3:16206580-16206599 None:intergenic 40.0%
AATGCAAAGCCTCGAGAAAT+CGG + chr7_3:16206594-16206613 None:intergenic 40.0%
GGAGAAATGGAGGAAGATAA+TGG - chr7_3:16206762-16206781 Msa1094440:CDS 40.0%
!! AGGAAGATAATGGAAGGGAA+AGG - chr7_3:16206772-16206791 Msa1094440:CDS 40.0%
!! GGAAGATAATGGAAGGGAAA+GGG - chr7_3:16206773-16206792 Msa1094440:CDS 40.0%
CTTGATTGAGTCACTGCATT+AGG + chr7_3:16206820-16206839 None:intergenic 40.0%
CTAATGCAGTGACTCAATCA+AGG - chr7_3:16206818-16206837 Msa1094440:CDS 40.0%
TGATGGTTACAGGTTAACTG+AGG - chr7_3:16206864-16206883 Msa1094440:CDS 40.0%
GCTTCCCACATTGAACTATC+TGG + chr7_3:16204678-16204697 None:intergenic 45.0%
GCCAGCTATTGAAGAGTTCT+TGG - chr7_3:16204980-16204999 Msa1094440:CDS 45.0%
TGGTGTGTCCTCAATGTCTA+TGG - chr7_3:16205570-16205589 Msa1094440:CDS 45.0%
TACCTTCCCATCAAACCCTA+TGG - chr7_3:16206063-16206082 Msa1094440:intron 45.0%
TTCCATAGGGTTTGATGGGA+AGG + chr7_3:16206068-16206087 None:intergenic 45.0%
GGACTTCCATAGGGTTTGAT+GGG + chr7_3:16206072-16206091 None:intergenic 45.0%
AGGACTTCCATAGGGTTTGA+TGG + chr7_3:16206073-16206092 None:intergenic 45.0%
GGCAAGCTTGGTAGACAATT+TGG + chr7_3:16206105-16206124 None:intergenic 45.0%
!! CTCGAAAATGGCTTGGTTAG+CGG + chr7_3:16206152-16206171 None:intergenic 45.0%
GGATATCAAGGTCGATGACA+TGG + chr7_3:16206198-16206217 None:intergenic 45.0%
! GGTAGCCTTGAAGGATATCA+AGG + chr7_3:16206210-16206229 None:intergenic 45.0%
ACTCCAGTGATCCTAAGGAA+CGG + chr7_3:16206280-16206299 None:intergenic 45.0%
TTCCTTAGGATCACTGGAGT+TGG - chr7_3:16206280-16206299 Msa1094440:CDS 45.0%
TCCTTAGGATCACTGGAGTT+GGG - chr7_3:16206281-16206300 Msa1094440:CDS 45.0%
ATCGAATCGGTTAGGGAAAC+CGG - chr7_3:16206310-16206329 Msa1094440:CDS 45.0%
! CCTCAAGTTGTTCTCCAACA+GGG + chr7_3:16206387-16206406 None:intergenic 45.0%
! TCCTCAAGTTGTTCTCCAAC+AGG + chr7_3:16206388-16206407 None:intergenic 45.0%
TGGTGCTTGGTCTCTTATCA+TGG + chr7_3:16206515-16206534 None:intergenic 45.0%
!! GTGTCACTATGTTTGGTGCT+TGG + chr7_3:16206528-16206547 None:intergenic 45.0%
GAGCAAGAAGCAAGCCATAA+CGG - chr7_3:16206553-16206572 Msa1094440:CDS 45.0%
AGCAAGAAGCAAGCCATAAC+GGG - chr7_3:16206554-16206573 Msa1094440:CDS 45.0%
!!! CATAACGGGCCGTACTTTTT+GGG - chr7_3:16206568-16206587 Msa1094440:CDS 45.0%
CGAGGCTTTGCATTACTACT+CGG - chr7_3:16206600-16206619 Msa1094440:CDS 45.0%
! CTCGGCAATTTTCGACTCTT+TGG - chr7_3:16206618-16206637 Msa1094440:CDS 45.0%
!!! TTTGGACGCTACTTTTCCTG+TGG - chr7_3:16206636-16206655 Msa1094440:CDS 45.0%
AGAGGATAGAGAGACATGAG+AGG - chr7_3:16206737-16206756 Msa1094440:CDS 45.0%
GATAGAGAGACATGAGAGGT+TGG - chr7_3:16206741-16206760 Msa1094440:CDS 45.0%
GACATGAGAGGTTGGAGAAA+TGG - chr7_3:16206749-16206768 Msa1094440:CDS 45.0%
ATGAGAGGTTGGAGAAATGG+AGG - chr7_3:16206752-16206771 Msa1094440:CDS 45.0%
ATGGAAGGGAAAGGGTTCAA+AGG - chr7_3:16206781-16206800 Msa1094440:CDS 45.0%
GTCACTGCATTAGGACTTAG+AGG + chr7_3:16206811-16206830 None:intergenic 45.0%
! AAGGTTGTTTGTTGCTTGGG+TGG - chr7_3:16206890-16206909 Msa1094440:CDS 45.0%
GAGGTGGTGAACAACCTGAT+AGG + chr7_3:16204833-16204852 None:intergenic 50.0%
GCTGCGCCACTATTCCTTTA+TGG + chr7_3:16205626-16205645 None:intergenic 50.0%
TCTAGCATGTGCTGAAGCAG+TGG - chr7_3:16205832-16205851 Msa1094440:intron 50.0%
TGTGCTGAAGCAGTGGCAAA+AGG - chr7_3:16205839-16205858 Msa1094440:intron 50.0%
CTTTGCATGGAGTCACCTAG+TGG + chr7_3:16205917-16205936 None:intergenic 50.0%
!! CGCTAACCAAGCCATTTTCG+AGG - chr7_3:16206150-16206169 Msa1094440:CDS 50.0%
CAAACGCCTCGAAAATGGCT+TGG + chr7_3:16206159-16206178 None:intergenic 50.0%
!! AGCCATTTTCGAGGCGTTTG+AGG - chr7_3:16206159-16206178 Msa1094440:CDS 50.0%
TGCCTCAAACGCCTCGAAAA+TGG + chr7_3:16206164-16206183 None:intergenic 50.0%
!! TCCCTAACCGATTCGATGCA+CGG + chr7_3:16206307-16206326 None:intergenic 50.0%
CAAGTTGTTCTCCAACAGGG+TGG + chr7_3:16206384-16206403 None:intergenic 50.0%
CCCTGTTGGAGAACAACTTG+AGG - chr7_3:16206384-16206403 Msa1094440:CDS 50.0%
ACACGGCGGTTAAACATGTG+CGG + chr7_3:16206418-16206437 None:intergenic 50.0%
CACATGTTTAACCGCCGTGT+AGG - chr7_3:16206418-16206437 Msa1094440:CDS 50.0%
AACACGGTGGAGACGGTTAA+CGG + chr7_3:16206464-16206483 None:intergenic 50.0%
CGAGATGATTGCCAGGAACA+CGG + chr7_3:16206480-16206499 None:intergenic 50.0%
CGTGTTCCTGGCAATCATCT+CGG - chr7_3:16206478-16206497 Msa1094440:CDS 50.0%
GTGTTCCTGGCAATCATCTC+GGG - chr7_3:16206479-16206498 Msa1094440:CDS 50.0%
! CCAAAAAGTACGGCCCGTTA+TGG + chr7_3:16206570-16206589 None:intergenic 50.0%
!!! CCATAACGGGCCGTACTTTT+TGG - chr7_3:16206567-16206586 Msa1094440:CDS 50.0%
!! CTTTTTGGGCCGATTTCTCG+AGG - chr7_3:16206582-16206601 Msa1094440:CDS 50.0%
TACTGCTCTACCTTAGCCCT+TGG + chr7_3:16206670-16206689 None:intergenic 50.0%
CCATGCAGAAGCAGCGATAA+TGG + chr7_3:16206926-16206945 None:intergenic 50.0%
CCATTATCGCTGCTTCTGCA+TGG - chr7_3:16206923-16206942 Msa1094440:CDS 50.0%
! CAGGCCATTGGTAGCCTTGA+AGG + chr7_3:16206219-16206238 None:intergenic 55.0%
CCTGCATGAATGCAGGCCAT+TGG + chr7_3:16206231-16206250 None:intergenic 55.0%
CCAATGGCCTGCATTCATGC+AGG - chr7_3:16206228-16206247 Msa1094440:CDS 55.0%
GCCTGCATTCATGCAGGCAT+TGG - chr7_3:16206234-16206253 Msa1094440:CDS 55.0%
GCCAATGCCTGCATGAATGC+AGG + chr7_3:16206238-16206257 None:intergenic 55.0%
!! TCATGCAGGCATTGGCTGCA+CGG - chr7_3:16206242-16206261 Msa1094440:CDS 55.0%
GCTCCGTTCCTTAGGATCAC+TGG - chr7_3:16206274-16206293 Msa1094440:CDS 55.0%
GCCCAACTCCAGTGATCCTA+AGG + chr7_3:16206285-16206304 None:intergenic 55.0%
AGTTGGGCCGTGCATCGAAT+CGG - chr7_3:16206297-16206316 Msa1094440:CDS 55.0%
GCCGTGCATCGAATCGGTTA+GGG - chr7_3:16206303-16206322 Msa1094440:CDS 55.0%
CAACAGGGTGGAACTCGAAG+GGG + chr7_3:16206372-16206391 None:intergenic 55.0%
CCAACAGGGTGGAACTCGAA+GGG + chr7_3:16206373-16206392 None:intergenic 55.0%
TCCAACAGGGTGGAACTCGA+AGG + chr7_3:16206374-16206393 None:intergenic 55.0%
GATGATTGCCAGGAACACGG+TGG + chr7_3:16206477-16206496 None:intergenic 55.0%
AGGTTCCCGAGATGATTGCC+AGG + chr7_3:16206487-16206506 None:intergenic 55.0%
TTCCTGTGGAGTCAGCACCA+AGG - chr7_3:16206650-16206669 Msa1094440:CDS 55.0%
TCCTGTGGAGTCAGCACCAA+GGG - chr7_3:16206651-16206670 Msa1094440:CDS 55.0%
ACCGGAGATTCGGAACATCG+TGG - chr7_3:16206699-16206718 Msa1094440:CDS 55.0%
GCCACGATGTTCCGAATCTC+CGG + chr7_3:16206703-16206722 None:intergenic 55.0%
CGGAACATCGTGGCATGTGA+AGG - chr7_3:16206709-16206728 Msa1094440:CDS 55.0%
CATCGTGGCATGTGAAGGTG+AGG - chr7_3:16206714-16206733 Msa1094440:CDS 55.0%
TGGCATGTGAAGGTGAGGAG+AGG - chr7_3:16206719-16206738 Msa1094440:CDS 55.0%
GGCCGTGCATCGAATCGGTT+AGG - chr7_3:16206302-16206321 Msa1094440:CDS 60.0%
! CCCTTCGAGTTCCACCCTGT+TGG - chr7_3:16206370-16206389 Msa1094440:CDS 60.0%
GTTTAACCGCCGTGTAGGCG+AGG - chr7_3:16206423-16206442 Msa1094440:CDS 60.0%
AACCGTCTCCACCGTGTTCC+TGG - chr7_3:16206466-16206485 Msa1094440:CDS 60.0%
TGCCAGGAACACGGTGGAGA+CGG + chr7_3:16206471-16206490 None:intergenic 60.0%
GGAGTCAGCACCAAGGGCTA+AGG - chr7_3:16206657-16206676 Msa1094440:CDS 60.0%
!! CTAAGGAACGGAGCACCGCC+GGG + chr7_3:16206268-16206287 None:intergenic 65.0%
!! CCTAAGGAACGGAGCACCGC+CGG + chr7_3:16206269-16206288 None:intergenic 65.0%
CCAAAGCCTCGCCTACACGG+CGG + chr7_3:16206432-16206451 None:intergenic 65.0%
CCGCCAAAGCCTCGCCTACA+CGG + chr7_3:16206435-16206454 None:intergenic 65.0%
! CCGTGTAGGCGAGGCTTTGG+CGG - chr7_3:16206432-16206451 Msa1094440:CDS 65.0%
!! GCCCTTGGTGCTGACTCCAC+AGG + chr7_3:16206655-16206674 None:intergenic 65.0%
!! CAGGCATTGGCTGCACGGCC+CGG - chr7_3:16206247-16206266 Msa1094440:CDS 70.0%
CCGGCGGTGCTCCGTTCCTT+AGG - chr7_3:16206266-16206285 Msa1094440:CDS 70.0%
CCGCCGTGTAGGCGAGGCTT+TGG - chr7_3:16206429-16206448 Msa1094440:CDS 70.0%
!! GCATTGGCTGCACGGCCCGG+CGG - chr7_3:16206250-16206269 Msa1094440:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 16204471 16206954 16204471 ID=Msa1094440;Name=Msa1094440
chr7_3 mRNA 16204471 16206954 16204471 ID=Msa1094440-mRNA-1;Parent=Msa1094440;Name=Msa1094440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|674
chr7_3 exon 16206088 16206954 16206088 ID=Msa1094440-mRNA-1:exon:3627;Parent=Msa1094440-mRNA-1
chr7_3 exon 16204471 16205628 16204471 ID=Msa1094440-mRNA-1:exon:3626;Parent=Msa1094440-mRNA-1
chr7_3 CDS 16206088 16206954 16206088 ID=Msa1094440-mRNA-1:cds;Parent=Msa1094440-mRNA-1
chr7_3 CDS 16204471 16205628 16204471 ID=Msa1094440-mRNA-1:cds;Parent=Msa1094440-mRNA-1
Gene Sequence

>Msa1094440

ATGATGAATTCACTTTGTGGAAGCTCAAATTCTCTCAAAGAAAAATGTCTTCAACCCAATTCTTCAAATCAAACAAATACACACTCAAAGAAAAATGCCACAAATTCTTGTGGTGATTTAGAGCAAATTAATGTTCTAACTCCACAAAGCCTAAACTTACCATCTCTCAAATTTGACTTAGATGTTGATGTGGAAGTCCAATCACCAGATAGTTCAATGTGGGAAGCATTTTTCAATGACCATTTAGATAATGATTTCATGATATCATCACCAATTAGAAACATTAACCCTAATTCACCACAAGCTTCTACTTACAATAATTGTAACTATAACTATGCTCAAGGCATGCAAATTCAAAGCCTATCAGGTTGTTCACCACCTCGTTTTGCATCACAAATTGGTTCATTAAATAGTAATAACCAACAAAAAGGGAAAGGACTTAGTCCACTTCATAGAGTATTTAATTCACCAAATAATCAATATATGCAACATGTTGAGAATCTTTCATTGCCAGCTATTGAAGAGTTCTTGGAAGATTTTCAAGGTGATGTTGATCACTTTTCATCAACAAAGGTTTCTTCTGAATGTTTTGACATGGAAACTCCAATATCAACAATTTTGGATAGTTTAACAATGCAAAATTCTTCAAGCTATTGTGGTTCAGTTAATGAAGAATCTACTATTTTGCATGGTGGTAATTCTTCTTCTCAACTTTCTCAAGAGAGTGATATGTATCATCAAATGGGATCTATGGCTAGTGCTTCTCTTTCACAAGCTTTACAACAAGAAAGGTACCAAGAGAAACATCAAAAGATGCAAGCTCAACAACAGAGTCTAACAGTTCCTATTCCAATTGGAATTGAGCAGGAACAAGACAGTGGACTTCAACTAGTGCACTTACTTCTAGCATGTGCTGAAGCAGTGGCAAAAGGTGAATACATGCTAGCAAGAAGGTACCTACACCAGCTCAATAAAGTAGTAACACCACTAGGTGACTCCATGCAAAGAGTAGCTTCATGTTTCACAGAATCTCTAAGTGCAAGACTGGCTGCAACCCTAACAACCAAGTCATCATCAACCAAAAAGTTAACACCATCATCGTTATCATCGTCATCCTCTTCATCATGTTTATCTACCTTCCCATCAAACCCTATGGAAGTCCTCAAGATCTACCAAATTGTCTACCAAGCTTGCCCTTACATAAAATTTGCACACTTTACCGCTAACCAAGCCATTTTCGAGGCGTTTGAGGCAGAAGAACGTGTCCATGTCATCGACCTTGATATCCTTCAAGGCTACCAATGGCCTGCATTCATGCAGGCATTGGCTGCACGGCCCGGCGGTGCTCCGTTCCTTAGGATCACTGGAGTTGGGCCGTGCATCGAATCGGTTAGGGAAACCGGACGATGCTTAACAGAGTTAGCTCATTCTCTTCGTATCCCCTTCGAGTTCCACCCTGTTGGAGAACAACTTGAGGATCTAAAACCGCACATGTTTAACCGCCGTGTAGGCGAGGCTTTGGCGGTTAACACCGTTAACCGTCTCCACCGTGTTCCTGGCAATCATCTCGGGAACCTGTTATCCATGATAAGAGACCAAGCACCAAACATAGTGACACTTGTGGAGCAAGAAGCAAGCCATAACGGGCCGTACTTTTTGGGCCGATTTCTCGAGGCTTTGCATTACTACTCGGCAATTTTCGACTCTTTGGACGCTACTTTTCCTGTGGAGTCAGCACCAAGGGCTAAGGTAGAGCAGTATATATTTGCACCGGAGATTCGGAACATCGTGGCATGTGAAGGTGAGGAGAGGATAGAGAGACATGAGAGGTTGGAGAAATGGAGGAAGATAATGGAAGGGAAAGGGTTCAAAGGAGTGCCTCTAAGTCCTAATGCAGTGACTCAATCAAGGATATTATTGGGTTTGTATTCATGTGATGGTTACAGGTTAACTGAGGATAAAGGTTGTTTGTTGCTTGGGTGGCAAGACAGAGCCATTATCGCTGCTTCTGCATGGCGATGCTGA
Protein sequence

>Msa1094440

MMNSLCGSSNSLKEKCLQPNSSNQTNTHSKKNATNSCGDLEQINVLTPQSLNLPSLKFDLDVDVEVQSPDSSMWEAFFNDHLDNDFMISSPIRNINPNSPQASTYNNCNYNYAQGMQIQSLSGCSPPRFASQIGSLNSNNQQKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEDFQGDVDHFSSTKVSSECFDMETPISTILDSLTMQNSSSYCGSVNEESTILHGGNSSSQLSQESDMYHQMGSMASASLSQALQQERYQEKHQKMQAQQQSLTVPIPIGIEQEQDSGLQLVHLLLACAEAVAKGEYMLARRYLHQLNKVVTPLGDSMQRVASCFTESLSARLAATLTTKSSSTKKLTPSSLSSSSSSSCLSTFPSNPMEVLKIYQIVYQACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGPCIESVRETGRCLTELAHSLRIPFEFHPVGEQLEDLKPHMFNRRVGEALAVNTVNRLHRVPGNHLGNLLSMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPVESAPRAKVEQYIFAPEIRNIVACEGEERIERHERLEKWRKIMEGKGFKGVPLSPNAVTQSRILLGLYSCDGYRLTEDKGCLLLGWQDRAIIAASAWRC*