Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1094500 | AES78267.1 | 52.041 | 392 | 112 | 8 | 8 | 325 | 74 | 463 | 3.10e-105 | 331 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1094500 | sp|F4K493|CLSY2_ARATH | 46.667 | 180 | 69 | 5 | 169 | 323 | 771 | 948 | 2.20e-39 | 151 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1094500 | G7L117 | 52.041 | 392 | 112 | 8 | 8 | 325 | 74 | 463 | 1.48e-105 | 331 |
Gene ID | Type | Classification |
---|---|---|
Msa1094500 | TR | SNF2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1094500 | MtrunA17_Chr7g0224031 | 83.495 | 103 | 17 | 0 | 221 | 323 | 49 | 151 | 2.26e-54 | 177 |
Msa1094500 | MtrunA17_Chr7g0224051 | 73.016 | 126 | 29 | 1 | 203 | 323 | 680 | 805 | 1.22e-52 | 186 |
Msa1094500 | MtrunA17_Chr7g0224051 | 46.748 | 246 | 65 | 6 | 1 | 186 | 314 | 553 | 3.97e-50 | 179 |
Msa1094500 | MtrunA17_Chr3g0114161 | 75.962 | 104 | 24 | 1 | 221 | 323 | 833 | 936 | 3.03e-45 | 165 |
Msa1094500 | MtrunA17_Chr3g0114161 | 66.957 | 115 | 32 | 2 | 1 | 109 | 427 | 541 | 3.29e-36 | 138 |
Msa1094500 | MtrunA17_Chr3g0114161 | 54.545 | 77 | 33 | 2 | 110 | 186 | 606 | 680 | 1.56e-13 | 71.6 |
Msa1094500 | MtrunA17_Chr5g0437621 | 46.939 | 196 | 71 | 5 | 158 | 323 | 802 | 994 | 7.52e-44 | 160 |
Msa1094500 | MtrunA17_Chr1g0191141 | 73.786 | 103 | 26 | 1 | 221 | 323 | 690 | 791 | 6.66e-43 | 158 |
Msa1094500 | MtrunA17_Chr1g0191141 | 38.017 | 242 | 86 | 7 | 1 | 186 | 307 | 540 | 3.69e-32 | 127 |
Msa1094500 | MtrunA17_Chr7g0233021 | 48.571 | 70 | 36 | 0 | 218 | 287 | 833 | 902 | 5.41e-14 | 73.2 |
Msa1094500 | MtrunA17_Chr4g0047081 | 45.833 | 72 | 39 | 0 | 218 | 289 | 835 | 906 | 8.94e-14 | 72.4 |
Msa1094500 | MtrunA17_Chr7g0232991 | 50.000 | 66 | 33 | 0 | 218 | 283 | 264 | 329 | 9.56e-14 | 72.0 |
Msa1094500 | MtrunA17_Chr7g0225791 | 40.964 | 83 | 49 | 0 | 218 | 300 | 885 | 967 | 2.71e-13 | 70.9 |
Msa1094500 | MtrunA17_Chr7g0232971 | 49.275 | 69 | 35 | 0 | 219 | 287 | 897 | 965 | 2.95e-13 | 70.9 |
Msa1094500 | MtrunA17_Chr7g0233031 | 49.231 | 65 | 33 | 0 | 223 | 287 | 858 | 922 | 1.11e-12 | 68.9 |
Msa1094500 | MtrunA17_Chr7g0233001 | 44.444 | 72 | 40 | 0 | 218 | 289 | 120 | 191 | 1.98e-12 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1094500 | AT5G20420.1 | 46.667 | 180 | 69 | 5 | 169 | 323 | 771 | 948 | 2.24e-40 | 151 |
Msa1094500 | AT3G42670.2 | 68.269 | 104 | 32 | 1 | 221 | 324 | 841 | 943 | 3.68e-39 | 147 |
Msa1094500 | AT3G42670.3 | 68.269 | 104 | 32 | 1 | 221 | 324 | 841 | 943 | 3.68e-39 | 147 |
Msa1094500 | AT3G42670.1 | 68.269 | 104 | 32 | 1 | 221 | 324 | 841 | 943 | 3.68e-39 | 147 |
Msa1094500 | AT3G42670.4 | 68.269 | 104 | 32 | 1 | 221 | 324 | 843 | 945 | 3.90e-39 | 147 |
Msa1094500 | AT3G24340.1 | 43.119 | 109 | 47 | 3 | 177 | 277 | 694 | 795 | 4.73e-14 | 73.6 |
Msa1094500 | AT1G05490.1 | 48.571 | 70 | 36 | 0 | 218 | 287 | 1000 | 1069 | 1.32e-12 | 69.3 |
Find 47 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGCACTTACATGAAGAATT+TGG | 0.177957 | 7_3:-16378530 | Msa1094500:CDS |
AGCACTTCGTGAACAAATTT+TGG | 0.230747 | 7_3:+16376921 | None:intergenic |
AACCTTGATTTAGTGCTTCT+AGG | 0.271299 | 7_3:+16377050 | None:intergenic |
TTGTCTTCTTCTTTAGATAA+TGG | 0.275139 | 7_3:+16377651 | None:intergenic |
GATGCACACAAGGAAATAAT+TGG | 0.325465 | 7_3:-16378550 | Msa1094500:CDS |
CTAAAGAAGAAGACAATGTT+TGG | 0.328401 | 7_3:-16377644 | Msa1094500:CDS |
TTTGTTTCTTCATTAATAGT+TGG | 0.352376 | 7_3:+16378484 | None:intergenic |
AAGGTTGAAGAAATGCTTAA+TGG | 0.374531 | 7_3:-16377033 | Msa1094500:CDS |
GAAGAATTTGGATAGTCTTC+CGG | 0.394022 | 7_3:-16378518 | Msa1094500:CDS |
AAGAAAAGAAATGTTGAGAA+AGG | 0.409608 | 7_3:+16377459 | None:intergenic |
TTTCTTTCGCAAAACATTGT+TGG | 0.412358 | 7_3:-16377565 | Msa1094500:CDS |
CATGAAGAACAAGATAATAA+TGG | 0.418039 | 7_3:-16378592 | Msa1094500:CDS |
GAAATGAATCCCTTCCCATT+TGG | 0.419989 | 7_3:+16378675 | None:intergenic |
TGAAGAAACAAACAAGTTTG+AGG | 0.450964 | 7_3:-16378473 | Msa1094500:CDS |
GCAAAACATTGTTGGTTTCG+TGG | 0.455573 | 7_3:-16377557 | Msa1094500:CDS |
TAAAGAAGAAGACAATGTTT+GGG | 0.466098 | 7_3:-16377643 | Msa1094500:CDS |
TTGATGACTTGTCCGCCACT+TGG | 0.468292 | 7_3:-16378411 | Msa1094500:CDS |
ATATCACATGCTCTTGGAGC+AGG | 0.473334 | 7_3:-16377487 | Msa1094500:CDS |
GATACTGCTTTAATAGCAAA+AGG | 0.477495 | 7_3:-16378379 | Msa1094500:intron |
AAATACTTGAGGAGAGGTAA+TGG | 0.479844 | 7_3:-16376882 | Msa1094500:CDS |
TCGTCAAGTATCAAGAGTCC+AGG | 0.499815 | 7_3:+16377083 | None:intergenic |
GCGGCGAAGGAGAATCTTCA+TGG | 0.500291 | 7_3:-16376829 | Msa1094500:CDS |
TTTCAGATCTTTCTTACGTG+AGG | 0.503386 | 7_3:+16377527 | None:intergenic |
TTCAGATCTTTCTTACGTGA+GGG | 0.523183 | 7_3:+16377528 | None:intergenic |
TCTTTAGATAATGGTTCACC+AGG | 0.523606 | 7_3:+16377660 | None:intergenic |
GAAAGATCTGAAACAAGTGT+TGG | 0.526144 | 7_3:-16377517 | Msa1094500:CDS |
ATCCTAGAAGCACTAAATCA+AGG | 0.536502 | 7_3:-16377052 | Msa1094500:CDS |
TGATGACTTGTCCGCCACTT+GGG | 0.540770 | 7_3:-16378410 | Msa1094500:CDS |
TGTGTCATATCACATGCTCT+TGG | 0.541798 | 7_3:-16377493 | Msa1094500:CDS |
GATCTTTCTTACGTGAGGGA+TGG | 0.542290 | 7_3:+16377532 | None:intergenic |
ATAGTTGGCTCTTCTTCAGC+CGG | 0.543638 | 7_3:+16378499 | None:intergenic |
ATTTGCTTGAGGCGCGGCGA+AGG | 0.544026 | 7_3:-16376842 | Msa1094500:CDS |
TCTTCATGGAAAACATTGCT+AGG | 0.547442 | 7_3:-16376815 | Msa1094500:CDS |
CACAACATTTGCTTGAGGCG+CGG | 0.558042 | 7_3:-16376848 | Msa1094500:CDS |
ATCTATTTCTTCCCAAGTGG+CGG | 0.558498 | 7_3:+16378399 | None:intergenic |
AGTTAGATTCTAAATACTTG+AGG | 0.561826 | 7_3:-16376893 | Msa1094500:CDS |
AATGTCGAAAAGAGATGATG+AGG | 0.575153 | 7_3:-16378443 | Msa1094500:CDS |
ACTCATTCTACTGATCCTCC+TGG | 0.582157 | 7_3:-16377678 | Msa1094500:CDS |
AAAACATTCAGAGAAAGCCC+TGG | 0.598405 | 7_3:-16377101 | Msa1094500:intron |
TTAGATAATGGTTCACCAGG+AGG | 0.622558 | 7_3:+16377663 | None:intergenic |
GATTCTAAATACTTGAGGAG+AGG | 0.628538 | 7_3:-16376888 | Msa1094500:CDS |
AAAATCAACTCACAATCATG+AGG | 0.638562 | 7_3:-16376792 | None:intergenic |
GTTAAATGTTGATGCACACA+AGG | 0.641852 | 7_3:-16378560 | Msa1094500:CDS |
AGTATCTATTTCTTCCCAAG+TGG | 0.646380 | 7_3:+16378396 | None:intergenic |
AAAGAGGAGAAACAATGCAG+TGG | 0.651340 | 7_3:-16377768 | Msa1094500:intron |
CGTCAAGTATCAAGAGTCCA+GGG | 0.651876 | 7_3:+16377084 | None:intergenic |
GAAAGCACAACATTTGCTTG+AGG | 0.655037 | 7_3:-16376853 | Msa1094500:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAATGTATATTCTTGTTA+AGG | + | chr7_3:16377510-16377529 | None:intergenic | 15.0% |
!!! | TTTAAATTTAGTTCCTTATT+TGG | - | chr7_3:16377525-16377544 | Msa1094500:CDS | 15.0% |
!! | ATATAAATAATTTATCAGGT+AGG | + | chr7_3:16377663-16377682 | None:intergenic | 15.0% |
!! | TATTTATATATATAAGTAGG+TGG | - | chr7_3:16377674-16377693 | Msa1094500:CDS | 15.0% |
!!! | AGAAATTCAAAAACTTTTTT+CGG | + | chr7_3:16377902-16377921 | None:intergenic | 15.0% |
!! | TTAAATGTATATTCTTGTTA+AGG | + | chr7_3:16377510-16377529 | None:intergenic | 15.0% |
!!! | TTTAAATTTAGTTCCTTATT+TGG | - | chr7_3:16377525-16377544 | Msa1094500:CDS | 15.0% |
!! | ATATAAATAATTTATCAGGT+AGG | + | chr7_3:16377663-16377682 | None:intergenic | 15.0% |
!! | TATTTATATATATAAGTAGG+TGG | - | chr7_3:16377674-16377693 | Msa1094500:CDS | 15.0% |
!!! | AGAAATTCAAAAACTTTTTT+CGG | + | chr7_3:16377902-16377921 | None:intergenic | 15.0% |
!!! | TTTGTTTCTTCATTAATAGT+TGG | + | chr7_3:16377001-16377020 | None:intergenic | 20.0% |
!!! | ATTGATTCATATATATTGTC+AGG | + | chr7_3:16377267-16377286 | None:intergenic | 20.0% |
!!! | TGATTTTTTCTACTTTTCTA+TGG | - | chr7_3:16377298-16377317 | Msa1094500:intron | 20.0% |
!!! | GATTTTTTCTACTTTTCTAT+GGG | - | chr7_3:16377299-16377318 | Msa1094500:intron | 20.0% |
!!! | GAAATTCAAAAACTTTTTTC+GGG | + | chr7_3:16377901-16377920 | None:intergenic | 20.0% |
!!! | TGATCTCTTTAATTCTAAAA+AGG | + | chr7_3:16378325-16378344 | None:intergenic | 20.0% |
!!! | TTTGTTTCTTCATTAATAGT+TGG | + | chr7_3:16377001-16377020 | None:intergenic | 20.0% |
!!! | ATTGATTCATATATATTGTC+AGG | + | chr7_3:16377267-16377286 | None:intergenic | 20.0% |
!!! | TGATTTTTTCTACTTTTCTA+TGG | - | chr7_3:16377298-16377317 | Msa1094500:intron | 20.0% |
!!! | GATTTTTTCTACTTTTCTAT+GGG | - | chr7_3:16377299-16377318 | Msa1094500:intron | 20.0% |
!!! | GAAATTCAAAAACTTTTTTC+GGG | + | chr7_3:16377901-16377920 | None:intergenic | 20.0% |
!!! | TGATCTCTTTAATTCTAAAA+AGG | + | chr7_3:16378325-16378344 | None:intergenic | 20.0% |
! | CATGAAGAACAAGATAATAA+TGG | - | chr7_3:16376890-16376909 | Msa1094500:CDS | 25.0% |
!!! | GTTTAATTTTGATACGCTAT+CGG | - | chr7_3:16377190-16377209 | Msa1094500:intron | 25.0% |
!! | TATGATAGGTTGTAATTTGT+TGG | + | chr7_3:16377234-16377253 | None:intergenic | 25.0% |
! | CAGGTCATTAAAAATATGAT+AGG | + | chr7_3:16377248-16377267 | None:intergenic | 25.0% |
! | ACAATAGACATAACCAAATA+AGG | + | chr7_3:16377541-16377560 | None:intergenic | 25.0% |
! | GTTTAACAAATCGTTATTCT+TGG | - | chr7_3:16377599-16377618 | Msa1094500:CDS | 25.0% |
! | TTGTCTTCTTCTTTAGATAA+TGG | + | chr7_3:16377834-16377853 | None:intergenic | 25.0% |
! | TAAAGAAGAAGACAATGTTT+GGG | - | chr7_3:16377839-16377858 | Msa1094500:intron | 25.0% |
! | AAGAAAAGAAATGTTGAGAA+AGG | + | chr7_3:16378026-16378045 | None:intergenic | 25.0% |
!!! | AATTTTGGTGCAAGTATTAA+TGG | + | chr7_3:16378082-16378101 | None:intergenic | 25.0% |
! | CAAAGAGTTAAAAAAATGGA+AGG | - | chr7_3:16378120-16378139 | Msa1094500:intron | 25.0% |
! | AATATTCACAAAAATTGCTC+TGG | + | chr7_3:16378518-16378537 | None:intergenic | 25.0% |
! | AGTTAGATTCTAAATACTTG+AGG | - | chr7_3:16378589-16378608 | Msa1094500:CDS | 25.0% |
! | CATGAAGAACAAGATAATAA+TGG | - | chr7_3:16376890-16376909 | Msa1094500:CDS | 25.0% |
!!! | GTTTAATTTTGATACGCTAT+CGG | - | chr7_3:16377190-16377209 | Msa1094500:intron | 25.0% |
!! | TATGATAGGTTGTAATTTGT+TGG | + | chr7_3:16377234-16377253 | None:intergenic | 25.0% |
! | CAGGTCATTAAAAATATGAT+AGG | + | chr7_3:16377248-16377267 | None:intergenic | 25.0% |
! | ACAATAGACATAACCAAATA+AGG | + | chr7_3:16377541-16377560 | None:intergenic | 25.0% |
! | GTTTAACAAATCGTTATTCT+TGG | - | chr7_3:16377599-16377618 | Msa1094500:CDS | 25.0% |
! | TTGTCTTCTTCTTTAGATAA+TGG | + | chr7_3:16377834-16377853 | None:intergenic | 25.0% |
! | TAAAGAAGAAGACAATGTTT+GGG | - | chr7_3:16377839-16377858 | Msa1094500:intron | 25.0% |
! | AAGAAAAGAAATGTTGAGAA+AGG | + | chr7_3:16378026-16378045 | None:intergenic | 25.0% |
!!! | AATTTTGGTGCAAGTATTAA+TGG | + | chr7_3:16378082-16378101 | None:intergenic | 25.0% |
! | CAAAGAGTTAAAAAAATGGA+AGG | - | chr7_3:16378120-16378139 | Msa1094500:intron | 25.0% |
! | AATATTCACAAAAATTGCTC+TGG | + | chr7_3:16378518-16378537 | None:intergenic | 25.0% |
! | AGTTAGATTCTAAATACTTG+AGG | - | chr7_3:16378589-16378608 | Msa1094500:CDS | 25.0% |
!!! | ATTTTGAAACCAAATGGGAA+GGG | - | chr7_3:16376798-16376817 | Msa1094500:CDS | 30.0% |
GAAGGGATTCATTTCAAAAA+AGG | - | chr7_3:16376815-16376834 | Msa1094500:CDS | 30.0% | |
TGAAGAAACAAACAAGTTTG+AGG | - | chr7_3:16377009-16377028 | Msa1094500:CDS | 30.0% | |
GATACTGCTTTAATAGCAAA+AGG | - | chr7_3:16377103-16377122 | Msa1094500:intron | 30.0% | |
ACGGTATATAATACTTGAAC+TGG | + | chr7_3:16377336-16377355 | None:intergenic | 30.0% | |
AAGTATTATATACCGTTGCA+GGG | - | chr7_3:16377340-16377359 | Msa1094500:intron | 30.0% | |
CTACTGCAATTTGTATATAG+TGG | - | chr7_3:16377561-16377580 | Msa1094500:CDS | 30.0% | |
CTAAAGAAGAAGACAATGTT+TGG | - | chr7_3:16377838-16377857 | Msa1094500:intron | 30.0% | |
! | ATGCATCTTTTCTTTGAATC+AGG | + | chr7_3:16377873-16377892 | None:intergenic | 30.0% |
TTTCTTTCGCAAAACATTGT+TGG | - | chr7_3:16377917-16377936 | Msa1094500:intron | 30.0% | |
!!! | AGTTACGTGAAGTTTTTTCT+AGG | - | chr7_3:16378049-16378068 | Msa1094500:intron | 30.0% |
! | TATGCGTAGAGTGTAAATTT+TGG | + | chr7_3:16378097-16378116 | None:intergenic | 30.0% |
AGCGCAAAGAGTTAAAAAAA+TGG | - | chr7_3:16378116-16378135 | Msa1094500:intron | 30.0% | |
! | ACATGTTTTACATCACCAAT+AGG | + | chr7_3:16378235-16378254 | None:intergenic | 30.0% |
!! | TGGTGATGTAAAACATGTTT+TGG | - | chr7_3:16378237-16378256 | Msa1094500:intron | 30.0% |
!! | AAACATGTTTTGGATTGTCT+TGG | - | chr7_3:16378247-16378266 | Msa1094500:intron | 30.0% |
TGTCTTGGCAAAAAATAAAG+TGG | - | chr7_3:16378262-16378281 | Msa1094500:intron | 30.0% | |
!!! | ATGTTTTAGCCATGTAGTTT+TGG | + | chr7_3:16378368-16378387 | None:intergenic | 30.0% |
AAGGTTGAAGAAATGCTTAA+TGG | - | chr7_3:16378449-16378468 | Msa1094500:CDS | 30.0% | |
!!! | ATTTTGAAACCAAATGGGAA+GGG | - | chr7_3:16376798-16376817 | Msa1094500:CDS | 30.0% |
GAAGGGATTCATTTCAAAAA+AGG | - | chr7_3:16376815-16376834 | Msa1094500:CDS | 30.0% | |
TGAAGAAACAAACAAGTTTG+AGG | - | chr7_3:16377009-16377028 | Msa1094500:CDS | 30.0% | |
GATACTGCTTTAATAGCAAA+AGG | - | chr7_3:16377103-16377122 | Msa1094500:intron | 30.0% | |
ACGGTATATAATACTTGAAC+TGG | + | chr7_3:16377336-16377355 | None:intergenic | 30.0% | |
AAGTATTATATACCGTTGCA+GGG | - | chr7_3:16377340-16377359 | Msa1094500:intron | 30.0% | |
CTACTGCAATTTGTATATAG+TGG | - | chr7_3:16377561-16377580 | Msa1094500:CDS | 30.0% | |
CTAAAGAAGAAGACAATGTT+TGG | - | chr7_3:16377838-16377857 | Msa1094500:intron | 30.0% | |
! | ATGCATCTTTTCTTTGAATC+AGG | + | chr7_3:16377873-16377892 | None:intergenic | 30.0% |
TTTCTTTCGCAAAACATTGT+TGG | - | chr7_3:16377917-16377936 | Msa1094500:intron | 30.0% | |
!!! | AGTTACGTGAAGTTTTTTCT+AGG | - | chr7_3:16378049-16378068 | Msa1094500:intron | 30.0% |
! | TATGCGTAGAGTGTAAATTT+TGG | + | chr7_3:16378097-16378116 | None:intergenic | 30.0% |
AGCGCAAAGAGTTAAAAAAA+TGG | - | chr7_3:16378116-16378135 | Msa1094500:intron | 30.0% | |
! | ACATGTTTTACATCACCAAT+AGG | + | chr7_3:16378235-16378254 | None:intergenic | 30.0% |
!! | TGGTGATGTAAAACATGTTT+TGG | - | chr7_3:16378237-16378256 | Msa1094500:intron | 30.0% |
!! | AAACATGTTTTGGATTGTCT+TGG | - | chr7_3:16378247-16378266 | Msa1094500:intron | 30.0% |
TGTCTTGGCAAAAAATAAAG+TGG | - | chr7_3:16378262-16378281 | Msa1094500:intron | 30.0% | |
!!! | ATGTTTTAGCCATGTAGTTT+TGG | + | chr7_3:16378368-16378387 | None:intergenic | 30.0% |
AAGGTTGAAGAAATGCTTAA+TGG | - | chr7_3:16378449-16378468 | Msa1094500:CDS | 30.0% | |
!!! | GATTTTGAAACCAAATGGGA+AGG | - | chr7_3:16376797-16376816 | Msa1094500:CDS | 35.0% |
GTTAAATGTTGATGCACACA+AGG | - | chr7_3:16376922-16376941 | Msa1094500:CDS | 35.0% | |
GATGCACACAAGGAAATAAT+TGG | - | chr7_3:16376932-16376951 | Msa1094500:CDS | 35.0% | |
TGGCACTTACATGAAGAATT+TGG | - | chr7_3:16376952-16376971 | Msa1094500:CDS | 35.0% | |
GAAGAATTTGGATAGTCTTC+CGG | - | chr7_3:16376964-16376983 | Msa1094500:CDS | 35.0% | |
AATGTCGAAAAGAGATGATG+AGG | - | chr7_3:16377039-16377058 | Msa1094500:CDS | 35.0% | |
! | AGTATCTATTTCTTCCCAAG+TGG | + | chr7_3:16377089-16377108 | None:intergenic | 35.0% |
ATAGCAAAAGGTCTTCTTGA+TGG | - | chr7_3:16377115-16377134 | Msa1094500:intron | 35.0% | |
!! | GATAGGTTGTAATTTGTTGG+TGG | + | chr7_3:16377231-16377250 | None:intergenic | 35.0% |
CAAGTATTATATACCGTTGC+AGG | - | chr7_3:16377339-16377358 | Msa1094500:intron | 35.0% | |
!! | AAAGGTTTTAGCAGATACCA+AGG | - | chr7_3:16377372-16377391 | Msa1094500:intron | 35.0% |
CTCATGTTCACAAATTTCCT+TGG | + | chr7_3:16377392-16377411 | None:intergenic | 35.0% | |
TGAATATTCTGTCGTAGTTG+CGG | - | chr7_3:16377427-16377446 | Msa1094500:intron | 35.0% | |
AGTAGGTGGAAAGACTAAAA+TGG | - | chr7_3:16377688-16377707 | Msa1094500:CDS | 35.0% | |
AAGACTAAAATGGCACAAAG+AGG | - | chr7_3:16377698-16377717 | Msa1094500:CDS | 35.0% | |
! | TCTTTAGATAATGGTTCACC+AGG | + | chr7_3:16377825-16377844 | None:intergenic | 35.0% |
TTCAGATCTTTCTTACGTGA+GGG | + | chr7_3:16377957-16377976 | None:intergenic | 35.0% | |
TTTCAGATCTTTCTTACGTG+AGG | + | chr7_3:16377958-16377977 | None:intergenic | 35.0% | |
! | GAAAGATCTGAAACAAGTGT+TGG | - | chr7_3:16377965-16377984 | Msa1094500:intron | 35.0% |
! | TCAAATCTGAAGTGGTTCAA+CGG | - | chr7_3:16378174-16378193 | Msa1094500:intron | 35.0% |
TTTACATCACCAATAGGTCT+TGG | + | chr7_3:16378229-16378248 | None:intergenic | 35.0% | |
ATTTGCACACCAAAACTACA+TGG | - | chr7_3:16378356-16378375 | Msa1094500:intron | 35.0% | |
!! | ATCCTAGAAGCACTAAATCA+AGG | - | chr7_3:16378430-16378449 | Msa1094500:CDS | 35.0% |
AACCTTGATTTAGTGCTTCT+AGG | + | chr7_3:16378435-16378454 | None:intergenic | 35.0% | |
! | AGCACTTCGTGAACAAATTT+TGG | + | chr7_3:16378564-16378583 | None:intergenic | 35.0% |
GATTCTAAATACTTGAGGAG+AGG | - | chr7_3:16378594-16378613 | Msa1094500:CDS | 35.0% | |
AAATACTTGAGGAGAGGTAA+TGG | - | chr7_3:16378600-16378619 | Msa1094500:CDS | 35.0% | |
TCTTCATGGAAAACATTGCT+AGG | - | chr7_3:16378667-16378686 | Msa1094500:CDS | 35.0% | |
!!! | GATTTTGAAACCAAATGGGA+AGG | - | chr7_3:16376797-16376816 | Msa1094500:CDS | 35.0% |
GTTAAATGTTGATGCACACA+AGG | - | chr7_3:16376922-16376941 | Msa1094500:CDS | 35.0% | |
GATGCACACAAGGAAATAAT+TGG | - | chr7_3:16376932-16376951 | Msa1094500:CDS | 35.0% | |
TGGCACTTACATGAAGAATT+TGG | - | chr7_3:16376952-16376971 | Msa1094500:CDS | 35.0% | |
GAAGAATTTGGATAGTCTTC+CGG | - | chr7_3:16376964-16376983 | Msa1094500:CDS | 35.0% | |
AATGTCGAAAAGAGATGATG+AGG | - | chr7_3:16377039-16377058 | Msa1094500:CDS | 35.0% | |
! | AGTATCTATTTCTTCCCAAG+TGG | + | chr7_3:16377089-16377108 | None:intergenic | 35.0% |
ATAGCAAAAGGTCTTCTTGA+TGG | - | chr7_3:16377115-16377134 | Msa1094500:intron | 35.0% | |
!! | GATAGGTTGTAATTTGTTGG+TGG | + | chr7_3:16377231-16377250 | None:intergenic | 35.0% |
CAAGTATTATATACCGTTGC+AGG | - | chr7_3:16377339-16377358 | Msa1094500:intron | 35.0% | |
!! | AAAGGTTTTAGCAGATACCA+AGG | - | chr7_3:16377372-16377391 | Msa1094500:intron | 35.0% |
CTCATGTTCACAAATTTCCT+TGG | + | chr7_3:16377392-16377411 | None:intergenic | 35.0% | |
TGAATATTCTGTCGTAGTTG+CGG | - | chr7_3:16377427-16377446 | Msa1094500:intron | 35.0% | |
AGTAGGTGGAAAGACTAAAA+TGG | - | chr7_3:16377688-16377707 | Msa1094500:CDS | 35.0% | |
AAGACTAAAATGGCACAAAG+AGG | - | chr7_3:16377698-16377717 | Msa1094500:CDS | 35.0% | |
! | TCTTTAGATAATGGTTCACC+AGG | + | chr7_3:16377825-16377844 | None:intergenic | 35.0% |
TTCAGATCTTTCTTACGTGA+GGG | + | chr7_3:16377957-16377976 | None:intergenic | 35.0% | |
TTTCAGATCTTTCTTACGTG+AGG | + | chr7_3:16377958-16377977 | None:intergenic | 35.0% | |
! | GAAAGATCTGAAACAAGTGT+TGG | - | chr7_3:16377965-16377984 | Msa1094500:intron | 35.0% |
! | TCAAATCTGAAGTGGTTCAA+CGG | - | chr7_3:16378174-16378193 | Msa1094500:intron | 35.0% |
TTTACATCACCAATAGGTCT+TGG | + | chr7_3:16378229-16378248 | None:intergenic | 35.0% | |
ATTTGCACACCAAAACTACA+TGG | - | chr7_3:16378356-16378375 | Msa1094500:intron | 35.0% | |
!! | ATCCTAGAAGCACTAAATCA+AGG | - | chr7_3:16378430-16378449 | Msa1094500:CDS | 35.0% |
AACCTTGATTTAGTGCTTCT+AGG | + | chr7_3:16378435-16378454 | None:intergenic | 35.0% | |
! | AGCACTTCGTGAACAAATTT+TGG | + | chr7_3:16378564-16378583 | None:intergenic | 35.0% |
GATTCTAAATACTTGAGGAG+AGG | - | chr7_3:16378594-16378613 | Msa1094500:CDS | 35.0% | |
AAATACTTGAGGAGAGGTAA+TGG | - | chr7_3:16378600-16378619 | Msa1094500:CDS | 35.0% | |
TCTTCATGGAAAACATTGCT+AGG | - | chr7_3:16378667-16378686 | Msa1094500:CDS | 35.0% | |
GAAATGAATCCCTTCCCATT+TGG | + | chr7_3:16376810-16376829 | None:intergenic | 40.0% | |
! | ATCTATTTCTTCCCAAGTGG+CGG | + | chr7_3:16377086-16377105 | None:intergenic | 40.0% |
TTTGCATTTGAACCCTGCAA+CGG | + | chr7_3:16377355-16377374 | None:intergenic | 40.0% | |
! | TAGTTGCGGCTTTGTGAATA+CGG | - | chr7_3:16377441-16377460 | Msa1094500:intron | 40.0% |
ATAGTGGCTACAACATCATG+AGG | - | chr7_3:16377577-16377596 | Msa1094500:CDS | 40.0% | |
AAAGAGGAGAAACAATGCAG+TGG | - | chr7_3:16377714-16377733 | Msa1094500:CDS | 40.0% | |
! | TTAGATAATGGTTCACCAGG+AGG | + | chr7_3:16377822-16377841 | None:intergenic | 40.0% |
!! | GCAAAACATTGTTGGTTTCG+TGG | - | chr7_3:16377925-16377944 | Msa1094500:intron | 40.0% |
TGTGTCATATCACATGCTCT+TGG | - | chr7_3:16377989-16378008 | Msa1094500:intron | 40.0% | |
CTGCTATGGATAAGATACAC+AGG | + | chr7_3:16378154-16378173 | None:intergenic | 40.0% | |
CACTTCAGATTTGACTGCTA+TGG | + | chr7_3:16378168-16378187 | None:intergenic | 40.0% | |
CATAGCAGTCAAATCTGAAG+TGG | - | chr7_3:16378166-16378185 | Msa1094500:intron | 40.0% | |
! | CCAGGAAGAACTGTAAGTTT+TGG | + | chr7_3:16378202-16378221 | None:intergenic | 40.0% |
CCAAAACTTACAGTTCTTCC+TGG | - | chr7_3:16378199-16378218 | Msa1094500:intron | 40.0% | |
ATAAAGTGGCATTCACACCT+AGG | - | chr7_3:16378276-16378295 | Msa1094500:intron | 40.0% | |
AAAACATTCAGAGAAAGCCC+TGG | - | chr7_3:16378381-16378400 | Msa1094500:CDS | 40.0% | |
! | GAAAGCACAACATTTGCTTG+AGG | - | chr7_3:16378629-16378648 | Msa1094500:CDS | 40.0% |
GAAATGAATCCCTTCCCATT+TGG | + | chr7_3:16376810-16376829 | None:intergenic | 40.0% | |
! | ATCTATTTCTTCCCAAGTGG+CGG | + | chr7_3:16377086-16377105 | None:intergenic | 40.0% |
TTTGCATTTGAACCCTGCAA+CGG | + | chr7_3:16377355-16377374 | None:intergenic | 40.0% | |
! | TAGTTGCGGCTTTGTGAATA+CGG | - | chr7_3:16377441-16377460 | Msa1094500:intron | 40.0% |
ATAGTGGCTACAACATCATG+AGG | - | chr7_3:16377577-16377596 | Msa1094500:CDS | 40.0% | |
AAAGAGGAGAAACAATGCAG+TGG | - | chr7_3:16377714-16377733 | Msa1094500:CDS | 40.0% | |
! | TTAGATAATGGTTCACCAGG+AGG | + | chr7_3:16377822-16377841 | None:intergenic | 40.0% |
!! | GCAAAACATTGTTGGTTTCG+TGG | - | chr7_3:16377925-16377944 | Msa1094500:intron | 40.0% |
TGTGTCATATCACATGCTCT+TGG | - | chr7_3:16377989-16378008 | Msa1094500:intron | 40.0% | |
CTGCTATGGATAAGATACAC+AGG | + | chr7_3:16378154-16378173 | None:intergenic | 40.0% | |
CACTTCAGATTTGACTGCTA+TGG | + | chr7_3:16378168-16378187 | None:intergenic | 40.0% | |
CATAGCAGTCAAATCTGAAG+TGG | - | chr7_3:16378166-16378185 | Msa1094500:intron | 40.0% | |
! | CCAGGAAGAACTGTAAGTTT+TGG | + | chr7_3:16378202-16378221 | None:intergenic | 40.0% |
CCAAAACTTACAGTTCTTCC+TGG | - | chr7_3:16378199-16378218 | Msa1094500:intron | 40.0% | |
ATAAAGTGGCATTCACACCT+AGG | - | chr7_3:16378276-16378295 | Msa1094500:intron | 40.0% | |
AAAACATTCAGAGAAAGCCC+TGG | - | chr7_3:16378381-16378400 | Msa1094500:CDS | 40.0% | |
! | GAAAGCACAACATTTGCTTG+AGG | - | chr7_3:16378629-16378648 | Msa1094500:CDS | 40.0% |
! | ATAGTTGGCTCTTCTTCAGC+CGG | + | chr7_3:16376986-16377005 | None:intergenic | 45.0% |
GTTGCAGGGTTCAAATGCAA+AGG | - | chr7_3:16377354-16377373 | Msa1094500:intron | 45.0% | |
ACTCATTCTACTGATCCTCC+TGG | - | chr7_3:16377804-16377823 | Msa1094500:intron | 45.0% | |
GATCTTTCTTACGTGAGGGA+TGG | + | chr7_3:16377953-16377972 | None:intergenic | 45.0% | |
ATATCACATGCTCTTGGAGC+AGG | - | chr7_3:16377995-16378014 | Msa1094500:intron | 45.0% | |
AGCTCATGACAAGAACACCT+AGG | + | chr7_3:16378296-16378315 | None:intergenic | 45.0% | |
CGTCAAGTATCAAGAGTCCA+GGG | + | chr7_3:16378401-16378420 | None:intergenic | 45.0% | |
TCGTCAAGTATCAAGAGTCC+AGG | + | chr7_3:16378402-16378421 | None:intergenic | 45.0% | |
! | ATAGTTGGCTCTTCTTCAGC+CGG | + | chr7_3:16376986-16377005 | None:intergenic | 45.0% |
GTTGCAGGGTTCAAATGCAA+AGG | - | chr7_3:16377354-16377373 | Msa1094500:intron | 45.0% | |
ACTCATTCTACTGATCCTCC+TGG | - | chr7_3:16377804-16377823 | Msa1094500:intron | 45.0% | |
GATCTTTCTTACGTGAGGGA+TGG | + | chr7_3:16377953-16377972 | None:intergenic | 45.0% | |
ATATCACATGCTCTTGGAGC+AGG | - | chr7_3:16377995-16378014 | Msa1094500:intron | 45.0% | |
AGCTCATGACAAGAACACCT+AGG | + | chr7_3:16378296-16378315 | None:intergenic | 45.0% | |
CGTCAAGTATCAAGAGTCCA+GGG | + | chr7_3:16378401-16378420 | None:intergenic | 45.0% | |
TCGTCAAGTATCAAGAGTCC+AGG | + | chr7_3:16378402-16378421 | None:intergenic | 45.0% | |
!! | CAAAAAAATATTATAAATAT+AGG | + | chr7_3:16377168-16377187 | None:intergenic | 5.0% |
!!! | CTATATTTATAATATTTTTT+TGG | - | chr7_3:16377166-16377185 | Msa1094500:intron | 5.0% |
!! | ATATATATAAATAATTTATC+AGG | + | chr7_3:16377667-16377686 | None:intergenic | 5.0% |
!! | AATTATTTATATATATAAGT+AGG | - | chr7_3:16377671-16377690 | Msa1094500:CDS | 5.0% |
!! | CAAAAAAATATTATAAATAT+AGG | + | chr7_3:16377168-16377187 | None:intergenic | 5.0% |
!!! | CTATATTTATAATATTTTTT+TGG | - | chr7_3:16377166-16377185 | Msa1094500:intron | 5.0% |
!! | ATATATATAAATAATTTATC+AGG | + | chr7_3:16377667-16377686 | None:intergenic | 5.0% |
!! | AATTATTTATATATATAAGT+AGG | - | chr7_3:16377671-16377690 | Msa1094500:CDS | 5.0% |
! | TTGATGACTTGTCCGCCACT+TGG | - | chr7_3:16377071-16377090 | Msa1094500:CDS | 50.0% |
! | TGATGACTTGTCCGCCACTT+GGG | - | chr7_3:16377072-16377091 | Msa1094500:CDS | 50.0% |
! | AGGTCTTCTTGATGGACCTG+AGG | - | chr7_3:16377123-16377142 | Msa1094500:intron | 50.0% |
AATCGATTGCCACACACCTC+AGG | + | chr7_3:16377142-16377161 | None:intergenic | 50.0% | |
CCAATAGGTCTTGGAACACC+AGG | + | chr7_3:16378220-16378239 | None:intergenic | 50.0% | |
CCTGGTGTTCCAAGACCTAT+TGG | - | chr7_3:16378217-16378236 | Msa1094500:intron | 50.0% | |
CACAACATTTGCTTGAGGCG+CGG | - | chr7_3:16378634-16378653 | Msa1094500:CDS | 50.0% | |
! | TTGATGACTTGTCCGCCACT+TGG | - | chr7_3:16377071-16377090 | Msa1094500:CDS | 50.0% |
! | TGATGACTTGTCCGCCACTT+GGG | - | chr7_3:16377072-16377091 | Msa1094500:CDS | 50.0% |
! | AGGTCTTCTTGATGGACCTG+AGG | - | chr7_3:16377123-16377142 | Msa1094500:intron | 50.0% |
AATCGATTGCCACACACCTC+AGG | + | chr7_3:16377142-16377161 | None:intergenic | 50.0% | |
CCAATAGGTCTTGGAACACC+AGG | + | chr7_3:16378220-16378239 | None:intergenic | 50.0% | |
CCTGGTGTTCCAAGACCTAT+TGG | - | chr7_3:16378217-16378236 | Msa1094500:intron | 50.0% | |
CACAACATTTGCTTGAGGCG+CGG | - | chr7_3:16378634-16378653 | Msa1094500:CDS | 50.0% | |
! | CTTGATGGACCTGAGGTGTG+TGG | - | chr7_3:16377130-16377149 | Msa1094500:intron | 55.0% |
GCGGCGAAGGAGAATCTTCA+TGG | - | chr7_3:16378653-16378672 | Msa1094500:CDS | 55.0% | |
! | CTTGATGGACCTGAGGTGTG+TGG | - | chr7_3:16377130-16377149 | Msa1094500:intron | 55.0% |
GCGGCGAAGGAGAATCTTCA+TGG | - | chr7_3:16378653-16378672 | Msa1094500:CDS | 55.0% | |
ATTTGCTTGAGGCGCGGCGA+AGG | - | chr7_3:16378640-16378659 | Msa1094500:CDS | 60.0% | |
ATTTGCTTGAGGCGCGGCGA+AGG | - | chr7_3:16378640-16378659 | Msa1094500:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 16376794 | 16378710 | 16376794 | ID=Msa1094500;Name=Msa1094500 |
chr7_3 | mRNA | 16376794 | 16378710 | 16376794 | ID=Msa1094500-mRNA-1;Parent=Msa1094500;Name=Msa1094500-mRNA-1;_AED=0.30;_eAED=0.37;_QI=0|0|0|1|1|1|3|0|325 |
chr7_3 | exon | 16378380 | 16378710 | 16378380 | ID=Msa1094500-mRNA-1:exon:3653;Parent=Msa1094500-mRNA-1 |
chr7_3 | exon | 16377459 | 16377786 | 16377459 | ID=Msa1094500-mRNA-1:exon:3652;Parent=Msa1094500-mRNA-1 |
chr7_3 | exon | 16376794 | 16377112 | 16376794 | ID=Msa1094500-mRNA-1:exon:3651;Parent=Msa1094500-mRNA-1 |
chr7_3 | CDS | 16378380 | 16378710 | 16378380 | ID=Msa1094500-mRNA-1:cds;Parent=Msa1094500-mRNA-1 |
chr7_3 | CDS | 16377459 | 16377786 | 16377459 | ID=Msa1094500-mRNA-1:cds;Parent=Msa1094500-mRNA-1 |
chr7_3 | CDS | 16376794 | 16377112 | 16376794 | ID=Msa1094500-mRNA-1:cds;Parent=Msa1094500-mRNA-1 |
Gene Sequence |
Protein sequence |