AlfalfaGEDB | Msa1094500

M. sativa cultivar zhongmu-4 / Msa1094500

KEGG: K10875
GO: GO:0000003 GO:0000018 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0033170 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1094500	AES78267.1	52.041	392	112	8	8	325	74	463	3.10e-105	331

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1094500	sp\|F4K493\|CLSY2_ARATH	46.667	180	69	5	169	323	771	948	2.20e-39	151

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1094500	G7L117	52.041	392	112	8	8	325	74	463	1.48e-105	331

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TFs/TRs:

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Gene ID	Type	Classification
Msa1094500	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1094500	MtrunA17_Chr7g0224031	83.495	103	17	0	221	323	49	151	2.26e-54	177
Msa1094500	MtrunA17_Chr7g0224051	73.016	126	29	1	203	323	680	805	1.22e-52	186
Msa1094500	MtrunA17_Chr7g0224051	46.748	246	65	6	1	186	314	553	3.97e-50	179
Msa1094500	MtrunA17_Chr3g0114161	75.962	104	24	1	221	323	833	936	3.03e-45	165
Msa1094500	MtrunA17_Chr3g0114161	66.957	115	32	2	1	109	427	541	3.29e-36	138
Msa1094500	MtrunA17_Chr3g0114161	54.545	77	33	2	110	186	606	680	1.56e-13	71.6
Msa1094500	MtrunA17_Chr5g0437621	46.939	196	71	5	158	323	802	994	7.52e-44	160
Msa1094500	MtrunA17_Chr1g0191141	73.786	103	26	1	221	323	690	791	6.66e-43	158
Msa1094500	MtrunA17_Chr1g0191141	38.017	242	86	7	1	186	307	540	3.69e-32	127
Msa1094500	MtrunA17_Chr7g0233021	48.571	70	36	0	218	287	833	902	5.41e-14	73.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1094500	AT5G20420.1	46.667	180	69	5	169	323	771	948	2.24e-40	151
Msa1094500	AT3G42670.2	68.269	104	32	1	221	324	841	943	3.68e-39	147
Msa1094500	AT3G42670.3	68.269	104	32	1	221	324	841	943	3.68e-39	147
Msa1094500	AT3G42670.1	68.269	104	32	1	221	324	841	943	3.68e-39	147
Msa1094500	AT3G42670.4	68.269	104	32	1	221	324	843	945	3.90e-39	147
Msa1094500	AT3G24340.1	43.119	109	47	3	177	277	694	795	4.73e-14	73.6
Msa1094500	AT1G05490.1	48.571	70	36	0	218	287	1000	1069	1.32e-12	69.3

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Find 47 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTCAGAGAAAGCCC+TGG	0.598405	7_3:-16377101	Msa1094500:intron
AAAATCAACTCACAATCATG+AGG	0.638562	7_3:-16376792	None:intergenic
AAAGAGGAGAAACAATGCAG+TGG	0.651340	7_3:-16377768	Msa1094500:intron
AAATACTTGAGGAGAGGTAA+TGG	0.479844	7_3:-16376882	Msa1094500:CDS
AACCTTGATTTAGTGCTTCT+AGG	0.271299	7_3:+16377050	None:intergenic
AAGAAAAGAAATGTTGAGAA+AGG	0.409608	7_3:+16377459	None:intergenic
AAGGTTGAAGAAATGCTTAA+TGG	0.374531	7_3:-16377033	Msa1094500:CDS
AATGTCGAAAAGAGATGATG+AGG	0.575153	7_3:-16378443	Msa1094500:CDS
ACTCATTCTACTGATCCTCC+TGG	0.582157	7_3:-16377678	Msa1094500:CDS
AGCACTTCGTGAACAAATTT+TGG	0.230747	7_3:+16376921	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGGGATTCATTTCAAAAA+AGG	-	chr7_3:16376815-16376834	Msa1094500:CDS	30.0%
TGAAGAAACAAACAAGTTTG+AGG	-	chr7_3:16377009-16377028	Msa1094500:CDS	30.0%
GATACTGCTTTAATAGCAAA+AGG	-	chr7_3:16377103-16377122	Msa1094500:intron	30.0%
ACGGTATATAATACTTGAAC+TGG	+	chr7_3:16377336-16377355	None:intergenic	30.0%
AAGTATTATATACCGTTGCA+GGG	-	chr7_3:16377340-16377359	Msa1094500:intron	30.0%
CTACTGCAATTTGTATATAG+TGG	-	chr7_3:16377561-16377580	Msa1094500:CDS	30.0%
CTAAAGAAGAAGACAATGTT+TGG	-	chr7_3:16377838-16377857	Msa1094500:intron	30.0%
TTTCTTTCGCAAAACATTGT+TGG	-	chr7_3:16377917-16377936	Msa1094500:intron	30.0%
AGCGCAAAGAGTTAAAAAAA+TGG	-	chr7_3:16378116-16378135	Msa1094500:intron	30.0%
TGTCTTGGCAAAAAATAAAG+TGG	-	chr7_3:16378262-16378281	Msa1094500:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	16376794	16378710	16376794	ID=Msa1094500;Name=Msa1094500
chr7_3	mRNA	16376794	16378710	16376794	ID=Msa1094500-mRNA-1;Parent=Msa1094500;Name=Msa1094500-mRNA-1;_AED=0.30;_eAED=0.37;_QI=0\|0\|0\|1\|1\|1\|3\|0\|325
chr7_3	exon	16378380	16378710	16378380	ID=Msa1094500-mRNA-1:exon:3653;Parent=Msa1094500-mRNA-1
chr7_3	exon	16377459	16377786	16377459	ID=Msa1094500-mRNA-1:exon:3652;Parent=Msa1094500-mRNA-1
chr7_3	exon	16376794	16377112	16376794	ID=Msa1094500-mRNA-1:exon:3651;Parent=Msa1094500-mRNA-1
chr7_3	CDS	16378380	16378710	16378380	ID=Msa1094500-mRNA-1:cds;Parent=Msa1094500-mRNA-1
chr7_3	CDS	16377459	16377786	16377459	ID=Msa1094500-mRNA-1:cds;Parent=Msa1094500-mRNA-1
chr7_3	CDS	16376794	16377112	16376794	ID=Msa1094500-mRNA-1:cds;Parent=Msa1094500-mRNA-1

Gene Sequence

>Msa1094500

ATGGATTTTGAAACCAAATGGGAAGGGATTCATTTCAAAAAAGGTGCTCAAACAAAAAGATATCATTCAATTTGTTTGTCAAACAAAATTCACAGTCATGAAGAACAAGATAATAATGGTGATAGAACGTTAAATGTTGATGCACACAAGGAAATAATTGGCACTTACATGAAGAATTTGGATAGTCTTCCGGCTGAAGAAGAGCCAACTATTAATGAAGAAACAAACAAGTTTGAGGAAGAAAAAATGTCGAAAAGAGATGATGAGGAAGAAAATCTTGATGACTTGTCCGCCACTTGGGAAGAAATAGATACTGCTTTAATAGCAAAAGAGGAGAAACAATGCAGTGGAGAAGATACTAATGAACAGAAATCAAAGCAAAAAGTTTATGAAGATGAGAACAATGATATGTTCTCAACTCATTCTACTGATCCTCCTGGTGAACCATTATCTAAAGAAGAAGACAATGTTTGGGAATTGATTCCTGATTCAAAGAAAAGATGCATACACACCCGAAAAAAGTTTTTGAATTTCTTTCGCAAAACATTGTTGGTTTCGTGGAACCATCCCTCACGTAAGAAAGATCTGAAACAAGTGTTGGATGTGTCATATCACATGCTCTTGGAGCAGGAAAAACCTTTCTCAACATTTCTTTTCTTAGAAAGCCCTGGACTCTTGATACTTGACGAAGCTCATAATCCTAGAAGCACTAAATCAAGGTTGAAGAAATGCTTAATGGAACTTTCAACAACATTAAGAATATTACTTTCTAGCACTCTTTTCCAGAGCAATTTTTGTGAATATTTCAACAATCTTTGTTTAGCAAGACCAAAATTTGTTCACGAAGTGCTACGAGAGTTAGATTCTAAATACTTGAGGAGAGGTAATGGAGAGAAGAAAGCACAACATTTGCTTGAGGCGCGGCGAAGGAGAATCTTCATGGAAAACATTGCTAGGAAAATCAACTCACAATCATGA

Protein sequence

>Msa1094500

MDFETKWEGIHFKKGAQTKRYHSICLSNKIHSHEEQDNNGDRTLNVDAHKEIIGTYMKNLDSLPAEEEPTINEETNKFEEEKMSKRDDEEENLDDLSATWEEIDTALIAKEEKQCSGEDTNEQKSKQKVYEDENNDMFSTHSTDPPGEPLSKEEDNVWELIPDSKKRCIHTRKKFLNFFRKTLLVSWNHPSRKKDLKQVLDVSYHMLLEQEKPFSTFLFLESPGLLILDEAHNPRSTKSRLKKCLMELSTTLRILLSSTLFQSNFCEYFNNLCLARPKFVHEVLRELDSKYLRRGNGEKKAQHLLEARRRRIFMENIARKINSQS*