AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1094650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1094650 MtrunA17_Chr4g0036071 80.000 55 11 0 1 55 348 402 2.56e-21 85.9
Msa1094650 MtrunA17_Chr2g0306581 81.250 48 9 0 1 48 1 48 1.03e-18 73.9
Msa1094650 MtrunA17_Chr2g0329551 65.455 55 19 0 1 55 209 263 1.65e-15 69.3
Msa1094650 MtrunA17_Chr6g0463571 68.627 51 16 0 1 51 139 189 8.99e-15 66.6
Msa1094650 MtrunA17_Chr5g0432701 65.455 55 19 0 1 55 147 201 1.03e-14 67.0
Msa1094650 MtrunA17_Chr3g0107491 65.455 55 19 0 1 55 165 219 1.58e-14 66.2
Msa1094650 MtrunA17_Chr1g0156051 73.333 45 12 0 1 45 375 419 7.36e-14 64.7
Msa1094650 MtrunA17_Chr3g0128781 56.364 55 24 0 1 55 96 150 6.93e-13 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1094650 AT4G38900.2 72.727 55 15 0 1 55 382 436 1.41e-19 81.3
Msa1094650 AT4G38900.3 72.727 55 15 0 1 55 382 436 1.41e-19 81.3
Msa1094650 AT2G21230.4 72.222 54 15 0 2 55 359 412 2.39e-17 74.7
Msa1094650 AT2G21230.1 72.222 54 15 0 2 55 359 412 2.39e-17 74.7
Msa1094650 AT2G21230.3 72.222 54 15 0 2 55 359 412 2.39e-17 74.7
Msa1094650 AT4G38900.1 65.574 61 15 1 1 55 382 442 3.10e-17 74.7
Msa1094650 AT2G21230.2 72.222 54 15 0 2 55 359 412 6.00e-17 73.6
Msa1094650 AT2G40620.1 67.273 55 18 0 1 55 136 190 5.98e-16 70.9
Msa1094650 AT1G06070.1 68.627 51 16 0 5 55 202 252 7.74e-15 67.8
Msa1094650 AT2G31370.5 63.636 55 20 0 1 55 189 243 1.11e-14 67.0
Msa1094650 AT2G31370.2 63.636 55 20 0 1 55 189 243 1.26e-14 67.0
Msa1094650 AT2G31370.4 63.636 55 20 0 1 55 189 243 1.26e-14 67.0
Msa1094650 AT2G31370.1 63.636 55 20 0 1 55 189 243 1.26e-14 67.0
Msa1094650 AT2G31370.7 63.636 55 20 0 1 55 189 243 1.26e-14 67.0
Msa1094650 AT2G31370.3 63.636 55 20 0 1 55 189 243 1.26e-14 67.0
Msa1094650 AT2G31370.6 63.636 55 20 0 1 55 189 243 1.26e-14 67.0
Msa1094650 AT1G06850.2 65.455 55 19 0 1 55 136 190 2.61e-14 65.1
Msa1094650 AT1G06850.1 65.455 55 19 0 1 55 136 190 5.15e-14 65.1
Msa1094650 AT1G43700.1 60.000 55 22 0 1 55 182 236 6.23e-14 65.1

Find 76 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGGTTATTTCAGGATTT+TGG 0.101232 7_3:+16618776 Msa1094650:intron
GGACCTTACCATACTGTATT+TGG 0.174241 7_3:+16619839 Msa1094650:three_prime_UTR
GCTTAAGATGCGAAATATTT+TGG 0.179703 7_3:+16618830 Msa1094650:CDS
ATTTGGAAAATAAATTTATA+AGG 0.205498 7_3:+16619856 Msa1094650:three_prime_UTR
AATAAATTTATAAGGGGAAT+TGG 0.239221 7_3:+16619864 Msa1094650:three_prime_UTR
TGCTACCAACACTGCTTTCT+CGG 0.291207 7_3:-16618971 None:intergenic
AAAATAATACTTTGCCTTTG+TGG 0.295890 7_3:-16619182 None:intergenic
GCAGTTGGGAAGATGTTTAT+TGG 0.300650 7_3:-16616900 None:intergenic
GGAAGATGTTTATTGGTAAC+AGG 0.305476 7_3:-16616893 None:intergenic
TTTGGAAAATAAATTTATAA+GGG 0.316986 7_3:+16619857 Msa1094650:three_prime_UTR
AGGTTTGGCAACTTTGAGTA+TGG 0.321602 7_3:+16619525 Msa1094650:three_prime_UTR
GTGATTCACCGAATCGAGTT+AGG 0.324969 7_3:-16617134 None:intergenic
TTCGGAGTTGAAGAAAATTA+TGG 0.328298 7_3:+16618628 Msa1094650:exon
AACACTGCTTTCTCGGTTCT+AGG 0.357024 7_3:-16618964 None:intergenic
GGACTGTAATCTTGAACTTC+AGG 0.367870 7_3:-16619143 None:intergenic
GCAACGGCACAACGAATTCT+TGG 0.368486 7_3:-16619083 None:intergenic
GAGGTGTCATATTCTGAAAT+TGG 0.368658 7_3:-16618902 None:intergenic
ATAAATTTATAAGGGGAATT+GGG 0.372298 7_3:+16619865 Msa1094650:three_prime_UTR
GTGAATCACCTACCTCGATT+TGG 0.390089 7_3:+16617148 Msa1094650:five_prime_UTR
ATCTAATAATAATAATCAAC+TGG 0.395377 7_3:-16619754 None:intergenic
TTCATCGTGGTTTGTCTCAC+CGG 0.399368 7_3:+16617190 Msa1094650:five_prime_UTR
ATTTCGCATCTTAAGCTCAA+TGG 0.420852 7_3:-16618823 None:intergenic
ATTGAAGGTCTTGTTGTGTT+TGG 0.431019 7_3:-16619657 None:intergenic
CAGCACCTCTTAGCCCGCTT+CGG 0.449837 7_3:-16618686 None:intergenic
CTCAAAACCCTAACTCGATT+CGG 0.452533 7_3:+16617126 Msa1094650:five_prime_UTR
CTATTCAGTTCCTTTGTGAA+TGG 0.454434 7_3:+16619624 Msa1094650:three_prime_UTR
TTGTGGAACCAAGCTCCATA+TGG 0.454668 7_3:-16619165 None:intergenic
AATAGATGCAGTGCTCTAGA+AGG 0.460695 7_3:-16619606 None:intergenic
ACAGCGAGTTTACCTTTGAC+AGG 0.463284 7_3:-16617235 None:intergenic
TTCAAGATTACAGTCCCATA+TGG 0.472759 7_3:+16619150 Msa1094650:three_prime_UTR
TGATTCACCGAATCGAGTTA+GGG 0.473094 7_3:-16617133 None:intergenic
GAATTCGTTGTGCCGTTGCT+AGG 0.480369 7_3:+16619087 Msa1094650:three_prime_UTR
TTAGACTGAGAAGAATGCTT+CGG 0.481879 7_3:+16618610 Msa1094650:intron
GAAAGTTCCTGAGATTGTTA+TGG 0.484882 7_3:+16618658 Msa1094650:CDS
ACAACAAGACCTTCAATTGA+AGG 0.487972 7_3:+16619663 Msa1094650:three_prime_UTR
CTATGTGTAGGATGGAGGTT+TGG 0.488964 7_3:+16619510 Msa1094650:intron
GGAGGACGAAGATGCGAAAC+CGG 0.489146 7_3:-16617209 None:intergenic
GCTCTAGAAGGTTGTGCATA+GGG 0.490885 7_3:-16619594 None:intergenic
TTAACTTTCGCCACCGTACG+TGG 0.497857 7_3:+16619555 Msa1094650:three_prime_UTR
TTTCCAAATACAGTATGGTA+AGG 0.500311 7_3:-16619842 None:intergenic
GGATCAGCCATAACAATCTC+AGG 0.500371 7_3:-16618665 None:intergenic
TCAGTTCCTTTGTGAATGGT+AGG 0.502741 7_3:+16619628 Msa1094650:three_prime_UTR
TTCCACATGTTATATGCGGT+TGG 0.517413 7_3:-16619714 None:intergenic
ATCGGAGTCTCAATGCAGTT+GGG 0.518475 7_3:-16616914 None:intergenic
AATCGGAGTCTCAATGCAGT+TGG 0.518865 7_3:-16616915 None:intergenic
TTACAGTCCCATATGGAGCT+TGG 0.523649 7_3:+16619157 Msa1094650:three_prime_UTR
CTGATCCGAAGCGGGCTAAG+AGG 0.529672 7_3:+16618681 Msa1094650:CDS
TGTGGAACCAAGCTCCATAT+GGG 0.530718 7_3:-16619164 None:intergenic
GTTCAGACTCTGAAGACTGA+AGG 0.542615 7_3:+16618867 Msa1094650:CDS
TGCTCTAGAAGGTTGTGCAT+AGG 0.543792 7_3:-16619595 None:intergenic
TCGTCCTCCGTCCCTGTCAA+AGG 0.545355 7_3:+16617223 Msa1094650:five_prime_UTR
TTGGAAAATAAATTTATAAG+GGG 0.545493 7_3:+16619858 Msa1094650:three_prime_UTR
TGTTATGGCTGATCCGAAGC+GGG 0.561676 7_3:+16618673 Msa1094650:CDS
CTATTTCCACATGTTATATG+CGG 0.562117 7_3:-16619718 None:intergenic
CATATCTATGTGTAGGATGG+AGG 0.564335 7_3:+16619505 Msa1094650:intron
TAGAACCGAGAAAGCAGTGT+TGG 0.572911 7_3:+16618966 Msa1094650:exon
CATGTGAGCTGCTCCACGTA+CGG 0.574107 7_3:-16619568 None:intergenic
TTCAGACTCTGAAGACTGAA+GGG 0.583079 7_3:+16618868 Msa1094650:CDS
CAGCGAGTTTACCTTTGACA+GGG 0.588627 7_3:-16617234 None:intergenic
TGAAGCAAACTCAGCAAGAG+AGG 0.599458 7_3:-16618921 None:intergenic
CGTACGTGGAGCAGCTCACA+TGG 0.603251 7_3:+16619569 Msa1094650:three_prime_UTR
GAGTTTACCTTTGACAGGGA+CGG 0.609469 7_3:-16617230 None:intergenic
CAGAGCAACCAAATCGAGGT+AGG 0.617079 7_3:-16617156 None:intergenic
TTTACCTTTGACAGGGACGG+AGG 0.619960 7_3:-16617227 None:intergenic
TGCCAACCGCATATAACATG+TGG 0.621796 7_3:+16619712 Msa1094650:three_prime_UTR
GTGAGACAAACCACGATGAA+CGG 0.631636 7_3:-16617187 None:intergenic
AACTGCATTGGTAACATACA+CGG 0.654345 7_3:+16616868 None:intergenic
TTGTTATGGCTGATCCGAAG+CGG 0.656660 7_3:+16618672 Msa1094650:CDS
CAATCAGAGCAACCAAATCG+AGG 0.675272 7_3:-16617160 None:intergenic
ACCTGTGAGGCTGAAAACGA+CGG 0.676440 7_3:-16616993 None:intergenic
TATGGAGCTTGGTTCCACAA+AGG 0.680414 7_3:+16619168 Msa1094650:three_prime_UTR
CAATCTCCTACCATTCACAA+AGG 0.682616 7_3:-16619634 None:intergenic
TGATTGATCACCGTTCATCG+TGG 0.686182 7_3:+16617177 Msa1094650:five_prime_UTR
GTGAGCTGCTCCACGTACGG+TGG 0.696358 7_3:-16619565 None:intergenic
AGTGCTCGAGAACCTAGCAA+CGG 0.707214 7_3:-16619099 None:intergenic
TGGCGCTGAGATTACCTGTG+AGG 0.723751 7_3:-16617006 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATCTACTTTTTTTTTT+TGG - chr7_3:16618082-16618101 None:intergenic 10.0%
!!! AATTATGTTTTGATTAAATT+AGG + chr7_3:16618204-16618223 Msa1094650:intron 10.0%
!! ATTTGGAAAATAAATTTATA+AGG + chr7_3:16619856-16619875 Msa1094650:three_prime_UTR 10.0%
!! TTTGGAAAATAAATTTATAA+GGG + chr7_3:16619857-16619876 Msa1094650:three_prime_UTR 10.0%
!! CAATTCAATAAAAAATGAAT+GGG - chr7_3:16616942-16616961 None:intergenic 15.0%
!! ACAATTCAATAAAAAATGAA+TGG - chr7_3:16616943-16616962 None:intergenic 15.0%
!! AAAAAAGACTACAAATTAAT+AGG - chr7_3:16617884-16617903 None:intergenic 15.0%
!! AATAAAAAATCTCAAGAAAA+AGG - chr7_3:16617952-16617971 None:intergenic 15.0%
!!! TTTTCTTGAGATTTTTTATT+TGG + chr7_3:16617952-16617971 Msa1094650:intron 15.0%
!! TACCAATATAAATGATAATT+TGG + chr7_3:16618123-16618142 Msa1094650:intron 15.0%
!! TTCCAAATTATCATTTATAT+TGG - chr7_3:16618128-16618147 None:intergenic 15.0%
!! AATATAAATGATAATTTGGA+AGG + chr7_3:16618127-16618146 Msa1094650:intron 15.0%
!! AAAAACATTTAAACTTCATA+AGG - chr7_3:16618324-16618343 None:intergenic 15.0%
!!! ATTTAACTTGGATATTTTTT+TGG + chr7_3:16618758-16618777 Msa1094650:intron 15.0%
!!! TTTAACTTGGATATTTTTTT+GGG + chr7_3:16618759-16618778 Msa1094650:intron 15.0%
!! ATCTAATAATAATAATCAAC+TGG - chr7_3:16619757-16619776 None:intergenic 15.0%
!! TTGGAAAATAAATTTATAAG+GGG + chr7_3:16619858-16619877 Msa1094650:three_prime_UTR 15.0%
!! ATAAAAAATGAATGGGAAAT+CGG - chr7_3:16616935-16616954 None:intergenic 20.0%
!!! ATAACTAATTTTCATTTTGC+TGG + chr7_3:16617535-16617554 Msa1094650:intron 20.0%
!!! CATCATTAGTTTTATGATTT+TGG + chr7_3:16617620-16617639 Msa1094650:intron 20.0%
!!! TTGTGATTTATGTGTATTTT+AGG + chr7_3:16618342-16618361 Msa1094650:intron 20.0%
!!! TTTATGTGTATTTTAGGATA+AGG + chr7_3:16618348-16618367 Msa1094650:intron 20.0%
!! TTTAGTTAGTAATGTCAATA+TGG + chr7_3:16618728-16618747 Msa1094650:intron 20.0%
!!! ATATTTTTTTGGGTTATTTC+AGG + chr7_3:16618769-16618788 Msa1094650:intron 20.0%
!! AGAAATGATCAATAAAGATT+TGG - chr7_3:16619003-16619022 None:intergenic 20.0%
!!! ATTTTTCGAAATGAAGAAAA+TGG - chr7_3:16619222-16619241 None:intergenic 20.0%
!! ATTGAAGGATGAAAAAAAAA+TGG + chr7_3:16619678-16619697 Msa1094650:three_prime_UTR 20.0%
!! TTGAAGGATGAAAAAAAAAT+GGG + chr7_3:16619679-16619698 Msa1094650:three_prime_UTR 20.0%
!!! AAATTGTTAAAGAGTTTTGT+AGG + chr7_3:16619818-16619837 Msa1094650:three_prime_UTR 20.0%
!!! TTTATTTTCCAAATACAGTA+TGG - chr7_3:16619850-16619869 None:intergenic 20.0%
!! AATAAATTTATAAGGGGAAT+TGG + chr7_3:16619864-16619883 Msa1094650:three_prime_UTR 20.0%
!! ATAAATTTATAAGGGGAATT+GGG + chr7_3:16619865-16619884 Msa1094650:three_prime_UTR 20.0%
! ACTATCATAACAAAACTAAG+AGG - chr7_3:16617492-16617511 None:intergenic 25.0%
! GATTACATTTACATCTAACA+TGG - chr7_3:16617718-16617737 None:intergenic 25.0%
! AAATGTAATCACAGTTATGT+TGG + chr7_3:16617728-16617747 Msa1094650:intron 25.0%
!!! TTTTTCGAAACATAACAGAT+GGG + chr7_3:16617822-16617841 Msa1094650:intron 25.0%
! CTAAATTACAATCTGTCATT+TGG + chr7_3:16617917-16617936 Msa1094650:intron 25.0%
!!! GGTATTGTTCTTTTTAACTA+TGG + chr7_3:16617973-16617992 Msa1094650:intron 25.0%
!!! GCATTTTTTTGACTTCATAT+TGG + chr7_3:16618007-16618026 Msa1094650:intron 25.0%
!!! TCTACTTTTTTTTTTTGGCT+AGG - chr7_3:16618077-16618096 None:intergenic 25.0%
! ATATGTATCTTGACTCTATT+TGG + chr7_3:16618247-16618266 Msa1094650:intron 25.0%
!!! TGGTCTGTTTTTAAATTGAA+TGG + chr7_3:16618267-16618286 Msa1094650:intron 25.0%
!!! GGTCTGTTTTTAAATTGAAT+GGG + chr7_3:16618268-16618287 Msa1094650:intron 25.0%
!!! TTTACTGCTCTTATTTTACT+TGG + chr7_3:16618481-16618500 Msa1094650:intron 25.0%
! TATGGATGGTAAATTTAACT+TGG + chr7_3:16618746-16618765 Msa1094650:intron 25.0%
! GTGTTAAATTATTATGACAG+CGG + chr7_3:16619057-16619076 Msa1094650:intron 25.0%
! AAAATAATACTTTGCCTTTG+TGG - chr7_3:16619185-16619204 None:intergenic 25.0%
! AAGTTCAGTATTCTATAGTA+TGG + chr7_3:16619242-16619261 Msa1094650:intron 25.0%
!!! TTTTTTCATCCTTCAATTGA+AGG - chr7_3:16619675-16619694 None:intergenic 25.0%
! CTTTTCAACATGAAAAGCTA+AGG - chr7_3:16617287-16617306 None:intergenic 30.0%
! GCTTTTCATGTTGAAAAGAA+TGG + chr7_3:16617289-16617308 Msa1094650:intron 30.0%
TGACAGTACACACAAAAATT+AGG - chr7_3:16617376-16617395 None:intergenic 30.0%
ACATTTACATCTAACATGGT+AGG - chr7_3:16617714-16617733 None:intergenic 30.0%
ACATGATTTCACAGTTATGT+TGG + chr7_3:16617759-16617778 Msa1094650:intron 30.0%
!!! CTTTTTCGAAACATAACAGA+TGG + chr7_3:16617821-16617840 Msa1094650:intron 30.0%
TTGTAATTTAGATGAGGCAT+GGG - chr7_3:16617908-16617927 None:intergenic 30.0%
ATTGTAATTTAGATGAGGCA+TGG - chr7_3:16617909-16617928 None:intergenic 30.0%
GACAGATTGTAATTTAGATG+AGG - chr7_3:16617914-16617933 None:intergenic 30.0%
ACAATGTGTGCTTACAATAT+GGG + chr7_3:16618418-16618437 Msa1094650:intron 30.0%
CATCAAAATCAGTTCAAATC+AGG - chr7_3:16618524-16618543 None:intergenic 30.0%
!! TTGAACTGATTTTGATGTCT+TGG + chr7_3:16618527-16618546 Msa1094650:intron 30.0%
TTCGGAGTTGAAGAAAATTA+TGG + chr7_3:16618628-16618647 Msa1094650:exon 30.0%
GTTAGTAATGTCAATATGGA+TGG + chr7_3:16618732-16618751 Msa1094650:intron 30.0%
!! TTTGGGTTATTTCAGGATTT+TGG + chr7_3:16618776-16618795 Msa1094650:intron 30.0%
! GCTTAAGATGCGAAATATTT+TGG + chr7_3:16618830-16618849 Msa1094650:CDS 30.0%
! ATTAGCTTCTTAGTAATCAG+AGG - chr7_3:16619034-16619053 None:intergenic 30.0%
TTGTCACTGTTGTCAAATAA+AGG + chr7_3:16619309-16619328 Msa1094650:intron 30.0%
TTGTCAAATAAAGGCTATAG+TGG + chr7_3:16619318-16619337 Msa1094650:intron 30.0%
CTATTTCCACATGTTATATG+CGG - chr7_3:16619721-16619740 None:intergenic 30.0%
TTTCCAAATACAGTATGGTA+AGG - chr7_3:16619845-16619864 None:intergenic 30.0%
! GGAAGATGTTTATTGGTAAC+AGG - chr7_3:16616896-16616915 None:intergenic 35.0%
!!! CCTTCAATTTTAGCTCCATT+CGG + chr7_3:16617097-16617116 Msa1094650:intron 35.0%
AAGGTGAAAGAAAGAAAGCA+AGG - chr7_3:16617268-16617287 None:intergenic 35.0%
TGTCACAACATGTCTTTCTT+AGG + chr7_3:16617391-16617410 Msa1094650:intron 35.0%
TGTAATTTAGATGAGGCATG+GGG - chr7_3:16617907-16617926 None:intergenic 35.0%
ATGTCTAAGCTGTAACTCAT+TGG + chr7_3:16618041-16618060 Msa1094650:intron 35.0%
!! GGGAAGTACTTTGAGATATT+TGG + chr7_3:16618288-16618307 Msa1094650:intron 35.0%
TAAGGCTTCATTCATTGCTA+AGG + chr7_3:16618366-16618385 Msa1094650:intron 35.0%
GACAATGTGTGCTTACAATA+TGG + chr7_3:16618417-16618436 Msa1094650:intron 35.0%
TTAGACTGAGAAGAATGCTT+CGG + chr7_3:16618610-16618629 Msa1094650:intron 35.0%
GAAAGTTCCTGAGATTGTTA+TGG + chr7_3:16618658-16618677 Msa1094650:CDS 35.0%
!!! ATTTCAGGATTTTGGCTAAC+AGG + chr7_3:16618784-16618803 Msa1094650:intron 35.0%
ATTTCGCATCTTAAGCTCAA+TGG - chr7_3:16618826-16618845 None:intergenic 35.0%
!!! TATTTTGGAGCTAGAACACA+AGG + chr7_3:16618845-16618864 Msa1094650:CDS 35.0%
!! GAGGTGTCATATTCTGAAAT+TGG - chr7_3:16618905-16618924 None:intergenic 35.0%
TTCAAGATTACAGTCCCATA+TGG + chr7_3:16619150-16619169 Msa1094650:three_prime_UTR 35.0%
TGCATTGCATATCTATGTGT+AGG + chr7_3:16619498-16619517 Msa1094650:intron 35.0%
TTGCATATCTATGTGTAGGA+TGG + chr7_3:16619502-16619521 Msa1094650:intron 35.0%
CTATTCAGTTCCTTTGTGAA+TGG + chr7_3:16619624-16619643 Msa1094650:three_prime_UTR 35.0%
!! ATTGAAGGTCTTGTTGTGTT+TGG - chr7_3:16619660-16619679 None:intergenic 35.0%
ACAACAAGACCTTCAATTGA+AGG + chr7_3:16619663-16619682 Msa1094650:three_prime_UTR 35.0%
GCAGTTGGGAAGATGTTTAT+TGG - chr7_3:16616903-16616922 None:intergenic 40.0%
CCGAATGGAGCTAAAATTGA+AGG - chr7_3:16617100-16617119 None:intergenic 40.0%
!!! GGTTTTGAGAGAAAACCGAA+TGG - chr7_3:16617115-16617134 None:intergenic 40.0%
CTCAAAACCCTAACTCGATT+CGG + chr7_3:16617126-16617145 Msa1094650:five_prime_UTR 40.0%
TGATTCACCGAATCGAGTTA+GGG - chr7_3:16617136-16617155 None:intergenic 40.0%
! ACCTTGTTATGCTTGTGTAG+GGG - chr7_3:16617451-16617470 None:intergenic 40.0%
! CACCTTGTTATGCTTGTGTA+GGG - chr7_3:16617452-16617471 None:intergenic 40.0%
CTACACAAGCATAACAAGGT+GGG + chr7_3:16617451-16617470 Msa1094650:intron 40.0%
GCTTAACTAATTGTGCAGGT+TGG - chr7_3:16617690-16617709 None:intergenic 40.0%
AGGAGCTTAACTAATTGTGC+AGG - chr7_3:16617694-16617713 None:intergenic 40.0%
CTTCATTCATTGCTAAGGCT+GGG + chr7_3:16618371-16618390 Msa1094650:intron 40.0%
!!! GATTTTGGCTAACAGGCAAT+CGG + chr7_3:16618791-16618810 Msa1094650:CDS 40.0%
! TTCAGACTCTGAAGACTGAA+GGG + chr7_3:16618868-16618887 Msa1094650:CDS 40.0%
GGACTGTAATCTTGAACTTC+AGG - chr7_3:16619146-16619165 None:intergenic 40.0%
! GACAAAAACCACTGCTGATT+TGG - chr7_3:16619294-16619313 None:intergenic 40.0%
CCACGAATCGCAGAAAATAA+TGG - chr7_3:16619440-16619459 None:intergenic 40.0%
! CCATTATTTTCTGCGATTCG+TGG + chr7_3:16619437-16619456 Msa1094650:intron 40.0%
CATATCTATGTGTAGGATGG+AGG + chr7_3:16619505-16619524 Msa1094650:intron 40.0%
AGGTTTGGCAACTTTGAGTA+TGG + chr7_3:16619525-16619544 Msa1094650:three_prime_UTR 40.0%
! AATAGATGCAGTGCTCTAGA+AGG - chr7_3:16619609-16619628 None:intergenic 40.0%
TCAGTTCCTTTGTGAATGGT+AGG + chr7_3:16619628-16619647 Msa1094650:three_prime_UTR 40.0%
CAATCTCCTACCATTCACAA+AGG - chr7_3:16619637-16619656 None:intergenic 40.0%
TTCCACATGTTATATGCGGT+TGG - chr7_3:16619717-16619736 None:intergenic 40.0%
GGACCTTACCATACTGTATT+TGG + chr7_3:16619839-16619858 Msa1094650:three_prime_UTR 40.0%
ATCGGAGTCTCAATGCAGTT+GGG - chr7_3:16616917-16616936 None:intergenic 45.0%
AATCGGAGTCTCAATGCAGT+TGG - chr7_3:16616918-16616937 None:intergenic 45.0%
GAAGAAGGAGGTGATGCTAT+CGG - chr7_3:16617039-16617058 None:intergenic 45.0%
ATAGCATCACCTCCTTCTTC+CGG + chr7_3:16617039-16617058 Msa1094650:intron 45.0%
GTGATTCACCGAATCGAGTT+AGG - chr7_3:16617137-16617156 None:intergenic 45.0%
GTGAATCACCTACCTCGATT+TGG + chr7_3:16617148-16617167 Msa1094650:five_prime_UTR 45.0%
CAATCAGAGCAACCAAATCG+AGG - chr7_3:16617163-16617182 None:intergenic 45.0%
TGATTGATCACCGTTCATCG+TGG + chr7_3:16617177-16617196 Msa1094650:five_prime_UTR 45.0%
GTGAGACAAACCACGATGAA+CGG - chr7_3:16617190-16617209 None:intergenic 45.0%
! TTCATCGTGGTTTGTCTCAC+CGG + chr7_3:16617190-16617209 Msa1094650:five_prime_UTR 45.0%
GAGTTTACCTTTGACAGGGA+CGG - chr7_3:16617233-16617252 None:intergenic 45.0%
CAGCGAGTTTACCTTTGACA+GGG - chr7_3:16617237-16617256 None:intergenic 45.0%
ACAGCGAGTTTACCTTTGAC+AGG - chr7_3:16617238-16617257 None:intergenic 45.0%
TCTTAGGCTGCTGAGAATGA+TGG + chr7_3:16617407-16617426 Msa1094650:intron 45.0%
! CCACCTTGTTATGCTTGTGT+AGG - chr7_3:16617453-16617472 None:intergenic 45.0%
CCTACACAAGCATAACAAGG+TGG + chr7_3:16617450-16617469 Msa1094650:intron 45.0%
TGCTGGCAGATCGAAACTTA+TGG + chr7_3:16617552-16617571 Msa1094650:intron 45.0%
GCTCATTTACCTCTCACTGT+TGG - chr7_3:16618180-16618199 None:intergenic 45.0%
GCTTCATTCATTGCTAAGGC+TGG + chr7_3:16618370-16618389 Msa1094650:intron 45.0%
AAGACTGCTTCAGAGGAAGA+AGG + chr7_3:16618556-16618575 Msa1094650:intron 45.0%
GGATCAGCCATAACAATCTC+AGG - chr7_3:16618668-16618687 None:intergenic 45.0%
TTGTTATGGCTGATCCGAAG+CGG + chr7_3:16618672-16618691 Msa1094650:CDS 45.0%
! GTTCAGACTCTGAAGACTGA+AGG + chr7_3:16618867-16618886 Msa1094650:CDS 45.0%
TGAAGCAAACTCAGCAAGAG+AGG - chr7_3:16618924-16618943 None:intergenic 45.0%
AACACTGCTTTCTCGGTTCT+AGG - chr7_3:16618967-16618986 None:intergenic 45.0%
TAGAACCGAGAAAGCAGTGT+TGG + chr7_3:16618966-16618985 Msa1094650:exon 45.0%
TGCTACCAACACTGCTTTCT+CGG - chr7_3:16618974-16618993 None:intergenic 45.0%
TTACAGTCCCATATGGAGCT+TGG + chr7_3:16619157-16619176 Msa1094650:three_prime_UTR 45.0%
TGTGGAACCAAGCTCCATAT+GGG - chr7_3:16619167-16619186 None:intergenic 45.0%
TTGTGGAACCAAGCTCCATA+TGG - chr7_3:16619168-16619187 None:intergenic 45.0%
TATGGAGCTTGGTTCCACAA+AGG + chr7_3:16619168-16619187 Msa1094650:three_prime_UTR 45.0%
!! CCACTGCTGATTTGGAAAAC+TGG - chr7_3:16619286-16619305 None:intergenic 45.0%
! CCAGTTTTCCAAATCAGCAG+TGG + chr7_3:16619283-16619302 Msa1094650:intron 45.0%
CTATGTGTAGGATGGAGGTT+TGG + chr7_3:16619510-16619529 Msa1094650:intron 45.0%
!! GCTCTAGAAGGTTGTGCATA+GGG - chr7_3:16619597-16619616 None:intergenic 45.0%
!! TGCTCTAGAAGGTTGTGCAT+AGG - chr7_3:16619598-16619617 None:intergenic 45.0%
TGCCAACCGCATATAACATG+TGG + chr7_3:16619712-16619731 Msa1094650:three_prime_UTR 45.0%
ACCTGTGAGGCTGAAAACGA+CGG - chr7_3:16616996-16617015 None:intergenic 50.0%
TAGATGCATATGACGCCCAC+CGG - chr7_3:16617061-16617080 None:intergenic 50.0%
CAGAGCAACCAAATCGAGGT+AGG - chr7_3:16617159-16617178 None:intergenic 50.0%
TTTACCTTTGACAGGGACGG+AGG - chr7_3:16617230-16617249 None:intergenic 50.0%
GCCCCTACACAAGCATAACA+AGG + chr7_3:16617447-16617466 Msa1094650:intron 50.0%
!! TTGGTGTGAGGGTGCTACAT+TGG - chr7_3:16618161-16618180 None:intergenic 50.0%
ACCTCTCACTGTTGGTGTGA+GGG - chr7_3:16618172-16618191 None:intergenic 50.0%
TACCTCTCACTGTTGGTGTG+AGG - chr7_3:16618173-16618192 None:intergenic 50.0%
TGCTAAGGCTGGGAAGTTGA+AGG + chr7_3:16618381-16618400 Msa1094650:intron 50.0%
TAAGGCTGGGAAGTTGAAGG+AGG + chr7_3:16618384-16618403 Msa1094650:intron 50.0%
GACTGAGAAGACTGCTTCAG+AGG + chr7_3:16618549-16618568 Msa1094650:intron 50.0%
TGTTATGGCTGATCCGAAGC+GGG + chr7_3:16618673-16618692 Msa1094650:CDS 50.0%
GCAACGGCACAACGAATTCT+TGG - chr7_3:16619086-16619105 None:intergenic 50.0%
! GAATTCGTTGTGCCGTTGCT+AGG + chr7_3:16619087-16619106 Msa1094650:three_prime_UTR 50.0%
AGTGCTCGAGAACCTAGCAA+CGG - chr7_3:16619102-16619121 None:intergenic 50.0%
ATAGTGGCGCTATTGCGTAG+TGG + chr7_3:16619334-16619353 Msa1094650:intron 50.0%
CGATTCGTGGTTGACATCAC+TGG + chr7_3:16619450-16619469 Msa1094650:intron 50.0%
TTAACTTTCGCCACCGTACG+TGG + chr7_3:16619555-16619574 Msa1094650:three_prime_UTR 50.0%
!! ACCGTCGTTTTCAGCCTCAC+AGG + chr7_3:16616992-16617011 Msa1094650:five_prime_UTR 55.0%
! TGGCGCTGAGATTACCTGTG+AGG - chr7_3:16617009-16617028 None:intergenic 55.0%
GTGATGCTATCGGAGGAAGG+TGG - chr7_3:16617029-16617048 None:intergenic 55.0%
GAGGTGATGCTATCGGAGGA+AGG - chr7_3:16617032-16617051 None:intergenic 55.0%
GAAGGAGGTGATGCTATCGG+AGG - chr7_3:16617036-16617055 None:intergenic 55.0%
CATCACCTCCTTCTTCCGGT+GGG + chr7_3:16617043-16617062 Msa1094650:intron 55.0%
ATATGACGCCCACCGGAAGA+AGG - chr7_3:16617054-16617073 None:intergenic 55.0%
GGAGGACGAAGATGCGAAAC+CGG - chr7_3:16617212-16617231 None:intergenic 55.0%
ACCCTCACACCAACAGTGAG+AGG + chr7_3:16618168-16618187 Msa1094650:intron 55.0%
CATGTGAGCTGCTCCACGTA+CGG - chr7_3:16619571-16619590 None:intergenic 55.0%
GCATCACCTCCTTCTTCCGG+TGG + chr7_3:16617042-16617061 Msa1094650:intron 60.0%
TCGTCCTCCGTCCCTGTCAA+AGG + chr7_3:16617223-16617242 Msa1094650:five_prime_UTR 60.0%
!! CTGATCCGAAGCGGGCTAAG+AGG + chr7_3:16618681-16618700 Msa1094650:CDS 60.0%
CAGCACCTCTTAGCCCGCTT+CGG - chr7_3:16618689-16618708 None:intergenic 60.0%
CGTACGTGGAGCAGCTCACA+TGG + chr7_3:16619569-16619588 Msa1094650:three_prime_UTR 60.0%
TGACGCCCACCGGAAGAAGG+AGG - chr7_3:16617051-16617070 None:intergenic 65.0%
GTGAGCTGCTCCACGTACGG+TGG - chr7_3:16619568-16619587 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 16616872 16619903 16616872 ID=Msa1094650;Name=Msa1094650
chr7_3 mRNA 16616872 16619903 16616872 ID=Msa1094650-mRNA-1;Parent=Msa1094650;Name=Msa1094650-mRNA-1;_AED=0.26;_eAED=0.26;_QI=310|0.8|0.83|1|0.4|0.33|6|521|77
chr7_3 exon 16616872 16617013 16616872 ID=Msa1094650-mRNA-1:exon:3704;Parent=Msa1094650-mRNA-1
chr7_3 exon 16617110 16617244 16617110 ID=Msa1094650-mRNA-1:exon:3705;Parent=Msa1094650-mRNA-1
chr7_3 exon 16618614 16618702 16618614 ID=Msa1094650-mRNA-1:exon:3706;Parent=Msa1094650-mRNA-1
chr7_3 exon 16618791 16618987 16618791 ID=Msa1094650-mRNA-1:exon:3707;Parent=Msa1094650-mRNA-1
chr7_3 exon 16619077 16619194 16619077 ID=Msa1094650-mRNA-1:exon:3708;Parent=Msa1094650-mRNA-1
chr7_3 exon 16619520 16619903 16619520 ID=Msa1094650-mRNA-1:exon:3709;Parent=Msa1094650-mRNA-1
chr7_3 five_prime_UTR 16616872 16617013 16616872 ID=Msa1094650-mRNA-1:five_prime_utr;Parent=Msa1094650-mRNA-1
chr7_3 five_prime_UTR 16617110 16617244 16617110 ID=Msa1094650-mRNA-1:five_prime_utr;Parent=Msa1094650-mRNA-1
chr7_3 five_prime_UTR 16618614 16618646 16618614 ID=Msa1094650-mRNA-1:five_prime_utr;Parent=Msa1094650-mRNA-1
chr7_3 CDS 16618647 16618702 16618647 ID=Msa1094650-mRNA-1:cds;Parent=Msa1094650-mRNA-1
chr7_3 CDS 16618791 16618968 16618791 ID=Msa1094650-mRNA-1:cds;Parent=Msa1094650-mRNA-1
chr7_3 three_prime_UTR 16618969 16618987 16618969 ID=Msa1094650-mRNA-1:three_prime_utr;Parent=Msa1094650-mRNA-1
chr7_3 three_prime_UTR 16619077 16619194 16619077 ID=Msa1094650-mRNA-1:three_prime_utr;Parent=Msa1094650-mRNA-1
chr7_3 three_prime_UTR 16619520 16619903 16619520 ID=Msa1094650-mRNA-1:three_prime_utr;Parent=Msa1094650-mRNA-1
Gene Sequence

>Msa1094650

ATGGCTAATGAGAAAGTTCCTGAGATTGTTATGGCTGATCCGAAGCGGGCTAAGAGGATTTTGGCTAACAGGCAATCGGCTGCGCGTTCCATTGAGCTTAAGATGCGAAATATTTTGGAGCTAGAACACAAGGTTCAGACTCTGAAGACTGAAGGGTTGTTTCTTCTCCAATTTCAGAATATGACACCTCTCTTGCTGAGTTTGCTTCAGCAATTGCTGAGTTATGAAGCCTAG
Protein sequence

>Msa1094650

MANEKVPEIVMADPKRAKRILANRQSAARSIELKMRNILELEHKVQTLKTEGLFLLQFQNMTPLLLSLLQQLLSYEA*