AlfalfaGEDB | Msa1095990

M. sativa cultivar zhongmu-4 / Msa1095990

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1095990	XP_013450231.1	83.779	524	64	4	1	524	1	503	0.0	836

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1095990	sp\|Q7XJK8\|PHE2_ARATH	27.985	268	164	7	6	264	2	249	3.98e-19	90.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1095990	A0A072U3F6	83.779	524	64	4	1	524	1	503	0.0	836

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TFs/TRs:

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Gene ID	Type	Classification
Msa1095990	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1095990	MtrunA17_Chr7g0267601	83.779	524	64	4	1	524	1	503	0.0	836
Msa1095990	MtrunA17_Chr4g0008701	83.397	524	82	2	1	524	1	519	0.0	829
Msa1095990	MtrunA17_Chr3g0128721	44.158	582	255	11	1	524	1	570	3.05e-132	396
Msa1095990	MtrunA17_Chr8g0361741	52.344	256	118	1	13	268	13	264	4.62e-70	226
Msa1095990	MtrunA17_Chr3g0107381	33.939	165	105	2	1	164	1	162	2.17e-24	101
Msa1095990	MtrunA17_Chr5g0432691	32.692	156	105	0	7	162	4	159	1.01e-22	94.7
Msa1095990	MtrunA17_Chr8g0351751	38.168	131	79	1	4	132	1	131	3.21e-22	95.9
Msa1095990	MtrunA17_Chr3g0107331	34.667	150	97	1	6	154	2	151	1.39e-21	91.7
Msa1095990	MtrunA17_Chr4g0014321	36.066	122	78	0	6	127	3	124	2.13e-21	93.2
Msa1095990	MtrunA17_Chr3g0107351	32.026	153	103	1	6	157	2	154	1.94e-20	88.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1095990	AT1G65300.1	27.985	268	164	7	6	264	2	249	4.04e-20	90.9
Msa1095990	AT2G40210.1	28.916	166	115	2	4	169	1	163	2.20e-19	90.5
Msa1095990	AT3G05860.3	30.657	137	91	2	1	136	1	134	1.40e-16	80.1
Msa1095990	AT3G05860.1	30.657	137	91	2	1	136	1	134	1.57e-16	80.1
Msa1095990	AT3G05860.2	30.657	137	91	2	1	136	1	134	3.40e-16	77.8
Msa1095990	AT5G26650.1	31.579	114	78	0	7	120	2	115	3.93e-16	80.5
Msa1095990	AT5G27960.1	31.579	114	78	0	7	120	2	115	1.24e-15	78.6
Msa1095990	AT1G31630.1	31.304	115	78	1	6	120	2	115	5.93e-15	76.6
Msa1095990	AT5G06500.1	28.082	146	104	1	4	149	1	145	6.77e-15	75.1
Msa1095990	AT1G22590.2	29.358	109	74	1	6	114	3	108	6.88e-15	72.8

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Find 99 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATATTGGTGCCAACGT+TGG	0.577514	7_3:-19621866	None:intergenic
AAAGTTGACCAAATGACCAG+TGG	0.671225	7_3:+19621977	Msa1095990:CDS
AACAAATTTGATGATGGCAT+GGG	0.594149	7_3:+19622106	Msa1095990:CDS
AACAATATAGGTAGCAATAT+TGG	0.211965	7_3:+19622289	Msa1095990:CDS
AACACACCTACACCACCACT+AGG	0.650603	7_3:-19622331	None:intergenic
AATATGGCCATCTCCTACGG+TGG	0.571701	7_3:+19621532	Msa1095990:CDS
ACAACATAGATAGCAACATG+TGG	0.691102	7_3:+19622518	Msa1095990:CDS
ACAATATAGGTAGCAATATT+GGG	0.381596	7_3:+19622290	Msa1095990:CDS
ACACCATGATTTGTATGTGG+TGG	0.720749	7_3:-19622652	None:intergenic
ACATCACATGAAAATCATAG+TGG	0.625105	7_3:+19622217	Msa1095990:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGATACAAAACCATCAATA+TGG	+	chr7_3:19621516-19621535	Msa1095990:CDS	30.0%
TTGACTCATACTTGGTTATT+AGG	-	chr7_3:19621565-19621584	None:intergenic	30.0%
ATGCATCAAATTGAAAACGA+AGG	+	chr7_3:19621713-19621732	Msa1095990:CDS	30.0%
GTTATCAAAATCGCCAAAAT+CGG	-	chr7_3:19622089-19622108	None:intergenic	30.0%
ACATCACATGAAAATCATAG+TGG	+	chr7_3:19622217-19622236	Msa1095990:CDS	30.0%
GTGATACAAAACCATCAATA+TGG	+	chr7_3:19621516-19621535	Msa1095990:CDS	30.0%
TTGACTCATACTTGGTTATT+AGG	-	chr7_3:19621565-19621584	None:intergenic	30.0%
ATGCATCAAATTGAAAACGA+AGG	+	chr7_3:19621713-19621732	Msa1095990:CDS	30.0%
GTTATCAAAATCGCCAAAAT+CGG	-	chr7_3:19622089-19622108	None:intergenic	30.0%
ACATCACATGAAAATCATAG+TGG	+	chr7_3:19622217-19622236	Msa1095990:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	19621356	19622930	19621356	ID=Msa1095990;Name=Msa1095990
chr7_3	mRNA	19621356	19622930	19621356	ID=Msa1095990-mRNA-1;Parent=Msa1095990;Name=Msa1095990-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|524
chr7_3	exon	19621356	19622930	19621356	ID=Msa1095990-mRNA-1:exon:4235;Parent=Msa1095990-mRNA-1
chr7_3	CDS	19621356	19622930	19621356	ID=Msa1095990-mRNA-1:cds;Parent=Msa1095990-mRNA-1

Gene Sequence

>Msa1095990

ATGACTAGAATCAAAAAAAAGAAGATCACATCCAAATTGATTGAGAATAATACTCAAAGAAAGGCGCGTTATAAGAAAAGATTGAAAGGGTTGTTCACCAAAATGGAGCAGGTGACAATCTTATGTGGAATTGAGGCATGTGCGATTGTGTTTGGGCCAGGTGATACAAAACCATCAATATGGCCATCTCCTACGGTGGCTGAAGACCTAATAACCAAGTATGAGTCAATGTCATTGGATGTACAATCGAAAAATAAGACTGACCAATTGACTTTTTTGAAGGATAAGGGCAAAAAACTTGAAGCAAGCCTTGCAAAGATTGAAAAAGAAAATGAAGAGACTTTAATGGGAGCTTATATGCATCAAATTGAAAACGAAGGTAAGTCTTTAGATGATTTTGATCATGATGTGCTGAATCGTTTGATTGCTTTTACACTTGAAAAAATTAAGATCACTAGAAAGATGTCTAGGCATTTAGAAAAGGAGATCTTGCCTCTTAATAATCCTTCTCCAACGTTGGCACCAATATCTTTTACTTTAGAAGATGGTGGTGGGGTACAATCTGGGGTTAACATGTATGGACATGTTTTGAACCAACAACCCTTGTTAGATTTGGTCGAGAAAGTTGACCAAATGACCAGTGGTTTCAATAACAACCATGGAAGTAGCATGAAGATACCTCCACTAACAGATCTTAGTGGTGGTGGTTGTGATAACTTGGCTAATCAAGCCGATTTTGGCGATTTTGATAACAAATTTGATGATGGCATGGGAATACCATCACCTGAAAATTCTAGTGGTGGTTTTTATGCAGCGTTTTTTCAAGATAATTTGCAAGATTTTGATAGTATCATGGAGATAACATCACATGAAAATCATAGTGGTAGTGTTCATGATATGTTTCTTCCTCGTGGAAATCGGGGGAATTTTATTAACAATATAGGTAGCAATATTGGGATACAATCACATGAAAATCCTAGTGGTGGTGTAGGTGTGTTGCCTCCTCAAGGATATTTTGGAGGTCAAAGCAACTTTCAAGGTTTTGATGACATTACAGGTAGCAATACAAGGATACTACCACATGCAAATCTGAATGAGAATGTTGATTTGTTGCCTCCTCAAGAAAATTTTGAAGATCAAGAAAACTTTGGAGGTTTTGATGACAACATAGATAGCAACATGTGGATACAACATGCAAATTTTAGTGGTGGTGATACATTGCTTCCTCAAGAAAATTTTGGAGACCGATTTAACTTTGAAGATTTTGATAACAACACAGGTAGCAACATGTTGATACCACCACATACAAATCATGGTGTTGGTAATGTTGATGTTTTGTCTCATCAAAGAAATTTTGAAGTTCAGAAAAACTTTGGAGGTTTTGATGATGATACATGTAGCAACATGTGGAAACCTCCACATGAAAATCCAAGCAATGGTGGTGTTGATATGATGACTTTTCATCAAAACAATTTTGGCGGCAATATTAATGGAGATGGGATGCGGAGTTTTAATGCGAACTTTGTTGACAATAATTACAGGAACAACTTCAACCCTGGATTTCCTTCAGAATAA

Protein sequence

>Msa1095990

MTRIKKKKITSKLIENNTQRKARYKKRLKGLFTKMEQVTILCGIEACAIVFGPGDTKPSIWPSPTVAEDLITKYESMSLDVQSKNKTDQLTFLKDKGKKLEASLAKIEKENEETLMGAYMHQIENEGKSLDDFDHDVLNRLIAFTLEKIKITRKMSRHLEKEILPLNNPSPTLAPISFTLEDGGGVQSGVNMYGHVLNQQPLLDLVEKVDQMTSGFNNNHGSSMKIPPLTDLSGGGCDNLANQADFGDFDNKFDDGMGIPSPENSSGGFYAAFFQDNLQDFDSIMEITSHENHSGSVHDMFLPRGNRGNFINNIGSNIGIQSHENPSGGVGVLPPQGYFGGQSNFQGFDDITGSNTRILPHANLNENVDLLPPQENFEDQENFGGFDDNIDSNMWIQHANFSGGDTLLPQENFGDRFNFEDFDNNTGSNMLIPPHTNHGVGNVDVLSHQRNFEVQKNFGGFDDDTCSNMWKPPHENPSNGGVDMMTFHQNNFGGNINGDGMRSFNANFVDNNYRNNFNPGFPSE*