AlfalfaGEDB | Msa1097200

M. sativa cultivar zhongmu-4 / Msa1097200

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097200	XP_013447750.1	91.094	640	28	3	113	726	113	749	0.0	1050

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097200	sp\|Q9FFW5\|PERK8_ARATH	62.605	476	138	10	267	706	205	676	0.0	588

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097200	A0A072U7M3	91.094	640	28	3	113	726	113	749	0.0	1050

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097200	MtrunA17_Chr7g0221191	91.094	640	28	3	113	726	113	749	0.0	1050
Msa1097200	MtrunA17_Chr0c01g0489481	58.864	440	146	6	282	693	218	650	4.65e-166	493
Msa1097200	MtrunA17_Chr5g0413511	58.028	355	120	2	386	714	47	398	6.51e-148	437
Msa1097200	MtrunA17_Chr6g0485761	54.570	372	132	3	381	718	278	646	4.82e-137	419
Msa1097200	MtrunA17_Chr3g0144481	53.561	351	123	5	382	692	73	423	3.43e-125	380
Msa1097200	MtrunA17_Chr8g0373501	39.110	652	291	17	135	687	18	662	6.37e-125	387
Msa1097200	MtrunA17_Chr5g0403891	52.632	342	127	4	386	693	244	584	6.25e-118	367
Msa1097200	MtrunA17_Chr6g0485721	51.250	320	128	2	383	676	83	400	1.26e-106	331
Msa1097200	MtrunA17_Chr8g0389251	46.367	289	124	3	385	646	391	675	1.89e-84	281
Msa1097200	MtrunA17_Chr8g0341881	44.654	318	140	4	385	675	392	700	2.79e-84	282

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1097200	AT5G38560.1	62.605	476	138	10	267	706	205	676	0.0	588
Msa1097200	AT1G68690.1	58.202	445	149	7	288	705	271	705	0.0	537
Msa1097200	AT1G68690.3	58.202	445	149	7	288	705	271	705	0.0	537
Msa1097200	AT1G68690.2	58.202	445	149	7	288	705	271	705	0.0	537
Msa1097200	AT1G26150.1	59.361	438	144	6	298	707	330	761	0.0	537
Msa1097200	AT1G70460.1	50.515	485	192	6	287	724	224	707	1.74e-155	468
Msa1097200	AT1G68690.4	58.005	381	127	5	288	641	271	645	4.26e-155	465
Msa1097200	AT1G10620.1	47.967	492	197	9	272	721	238	712	1.45e-147	447
Msa1097200	AT1G23540.1	48.548	482	178	8	301	724	248	717	9.52e-147	446
Msa1097200	AT3G24550.1	57.478	341	110	2	382	687	264	604	3.53e-137	419

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Find 267 sgRNAs with CRISPR-Local

Find 499 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCAGCACCAGATGA+TGG	0.539033	7_3:-22389154	None:intergenic
AAAATGCACCCGTTCTGAAT+TGG	0.405099	7_3:+22391511	Msa1097200:CDS
AAACAACTTAAAATTGGTGG+TGG	0.581592	7_3:+22391090	Msa1097200:CDS
AAAGGAGGAACCGAGGGAGG+TGG	0.573321	7_3:-22389220	None:intergenic
AACGAAACAGTTGCTGCTGG+TGG	0.615889	7_3:+22389850	Msa1097200:CDS
AACTAATTCACCACCTCCCT+CGG	0.501662	7_3:+22389210	Msa1097200:CDS
AACTACTTTGAGACTCATTA+AGG	0.335919	7_3:-22394445	None:intergenic
AACTGAGGAGTGACGCACAC+AGG	0.623362	7_3:-22394145	None:intergenic
AACTGGAAGCAGAACTATCT+TGG	0.439996	7_3:-22394421	None:intergenic
AAGATATTACTGTGAATCAC+CGG	0.630521	7_3:-22394576	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCACATACAGTGTGAAAA+AGG	-	chr7_3:22388342-22388361	None:intergenic	30.0%
AAAAAGCAATATGGTGATAG+TGG	-	chr7_3:22388472-22388491	None:intergenic	30.0%
GATTTCAGATCAACTCAATT+GGG	-	chr7_3:22388839-22388858	None:intergenic	30.0%
AGATTTCAGATCAACTCAAT+TGG	-	chr7_3:22388840-22388859	None:intergenic	30.0%
TGTTATTGTTGTGGAAGATT+TGG	+	chr7_3:22389076-22389095	Msa1097200:five_prime_UTR	30.0%
TGGTGAATTAGTTGTTTGAT+TGG	-	chr7_3:22389203-22389222	None:intergenic	30.0%
TTTGTACGGAAGAAAAAGAA+GGG	+	chr7_3:22390060-22390079	Msa1097200:CDS	30.0%
CTATGGATATGAATACTTGA+GGG	+	chr7_3:22390223-22390242	Msa1097200:intron	30.0%
TATCTATATCGACAATTGTC+AGG	+	chr7_3:22390497-22390516	Msa1097200:intron	30.0%
AAAATGTTAGATGATTACGG+TGG	+	chr7_3:22390645-22390664	Msa1097200:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	22388309	22394835	22388309	ID=Msa1097200;Name=Msa1097200
chr7_3	mRNA	22388309	22394835	22388309	ID=Msa1097200-mRNA-1;Parent=Msa1097200;Name=Msa1097200-mRNA-1;_AED=0.07;_eAED=0.07;_QI=559\|0.85\|0.87\|1\|0.85\|0.75\|8\|288\|726
chr7_3	exon	22388309	22388542	22388309	ID=Msa1097200-mRNA-1:exon:4957;Parent=Msa1097200-mRNA-1
chr7_3	exon	22388781	22390141	22388781	ID=Msa1097200-mRNA-1:exon:4958;Parent=Msa1097200-mRNA-1
chr7_3	exon	22390851	22391267	22390851	ID=Msa1097200-mRNA-1:exon:4959;Parent=Msa1097200-mRNA-1
chr7_3	exon	22391508	22391594	22391508	ID=Msa1097200-mRNA-1:exon:4960;Parent=Msa1097200-mRNA-1
chr7_3	exon	22392240	22392309	22392240	ID=Msa1097200-mRNA-1:exon:4961;Parent=Msa1097200-mRNA-1
chr7_3	exon	22393356	22393503	22393356	ID=Msa1097200-mRNA-1:exon:4962;Parent=Msa1097200-mRNA-1
chr7_3	exon	22394027	22394188	22394027	ID=Msa1097200-mRNA-1:exon:4963;Parent=Msa1097200-mRNA-1
chr7_3	exon	22394287	22394835	22394287	ID=Msa1097200-mRNA-1:exon:4964;Parent=Msa1097200-mRNA-1
chr7_3	five_prime_UTR	22388309	22388542	22388309	ID=Msa1097200-mRNA-1:five_prime_utr;Parent=Msa1097200-mRNA-1
chr7_3	five_prime_UTR	22388781	22389105	22388781	ID=Msa1097200-mRNA-1:five_prime_utr;Parent=Msa1097200-mRNA-1
chr7_3	CDS	22389106	22390141	22389106	ID=Msa1097200-mRNA-1:cds;Parent=Msa1097200-mRNA-1
chr7_3	CDS	22390851	22391267	22390851	ID=Msa1097200-mRNA-1:cds;Parent=Msa1097200-mRNA-1
chr7_3	CDS	22391508	22391594	22391508	ID=Msa1097200-mRNA-1:cds;Parent=Msa1097200-mRNA-1
chr7_3	CDS	22392240	22392309	22392240	ID=Msa1097200-mRNA-1:cds;Parent=Msa1097200-mRNA-1
chr7_3	CDS	22393356	22393503	22393356	ID=Msa1097200-mRNA-1:cds;Parent=Msa1097200-mRNA-1
chr7_3	CDS	22394027	22394188	22394027	ID=Msa1097200-mRNA-1:cds;Parent=Msa1097200-mRNA-1
chr7_3	CDS	22394287	22394547	22394287	ID=Msa1097200-mRNA-1:cds;Parent=Msa1097200-mRNA-1
chr7_3	three_prime_UTR	22394548	22394835	22394548	ID=Msa1097200-mRNA-1:three_prime_utr;Parent=Msa1097200-mRNA-1

Gene Sequence

>Msa1097200

ATGGCTACAATCACTCTTTCTCCAAATGGTTCTCCCGTTGCATTGCCTCCATCATCTGGTGCTGCTGTTTTACCACCTACCACTTCTTCTCAGTCCAATCAAACAACTAATTCACCACCTCCCTCGGTTCCTCCTTTGTCGACGACAGTGCCAGTAACTCCTCCTCCTTCACCATCTCTTTCTCCTCCTCCACTGTTGACCACACCGCCGCCAGCATCTCCACCACCAGCATCATCACCTCCACCAATTGTAACATCACCGCCTCCTGCATCACCAGCTCCACCAGTTGTAACATCACCACCTCCTACACCAGCTGCTACCGCCCCTCCTCCAGCTGAAACTTCACCTTCCATTCCTAATTTGTCTCCACCACCTCCATCAGCTGGTTCCCCTCCTCCTCAACCATCAAAGCCACCTCCTTCTGAATCAGTTTCGCCGTCTCCTCCTCCTCCGGCACCAAAGCCACCATCTACCAAACCTCCTCCTCCTACACCACAAGCAAAGCCACCAAAAAGTAACACTCCTTCACCTCCTTCACATGATGCACCCCCTCCATCAGTTTCTAAATCACCTCCTTCCCCTTCTACTGATGTTCCACCTCCATCTACATTGCCATCTACTCCTCCTTCAGTCCCCTCAGAATCTGCAGCACCTCCTGCAGTCCCTTCAGGATCTGCAGCACCTCCTGCAGTCCCTTCAGGATCTGCGGCACCTCCAGCAGCATCTTTGCCTCGTCCTCCTAGGAACGAAACAGTTGCTGCTGGTGGTCCAACTGTGTCATTGCCATCTATTCCAACTGAGAAACCAACTGCTAGACCAACTGTTGATGGCTCTGGTAATGCAGCCACAAGCAATGCACCTTCAAATTCAGGAGGGTTAAATACCGGAGGAGCTGTTGCTATTGGCGTCGTTGTTAGTGTAGTTGTCATCAGCCTTCTTGTCATGGCTGTGTTGTTTGTACGGAAGAAAAAGAAGGGAAAAAGACCGATAGCTGATTATGCTGCACCTTCCCCATTTACCTCGTCTCACAATTCAGGTACCTTGTTCTTGAAGCCTCAGCCTCAGTCTCCAGCCAATTTTATAGGGAGTGGCAATGGTAGTGAATTTGTGTATTCACCATCAGAACCAGGTGGTGTAAATAGTTCAAGATCATGGTTCACATATGAAGAGCTTATCCAAGCTACGAACGGATTTTCAGAACAGAATATGTTGGGAGAAGGTGGTTTTGGTTGTGTCTACAAAGGTTTGCTCATAGATGGGAGAGAAGTAGCTGTGAAACAACTTAAAATTGGTGGTGGACAAGGGGAACGTGAATTCAGAGCAGAAGTTGAGACAATTAGTCGAGTACATCATCGTCATCTAGTTTCTTTGGTTGGTTATTGTATATCTGAACATCAAAGATTGCTTGTCTACGACTATGTTCCCAACAATACTCTTCATTATCATCTACATGATGAAAATGCACCCGTTCTGAATTGGCCTATCAGAGTTAAGGTTGCCGCTGGTGCAGCTCGTGGAATAGCTTACCTACATGAAGATTATTTTGGGCTTGCAAAATTAACACTGGATTCAAACACACACGTTACTACACGTGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCAACAAGTGGGAAATTGACTGATAAGTCTGATGTATATTCCTACGGTGTTGTACTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCCTCTCAGCCAATTGGTGACGAGAGCTTGGTTGAATGGGCTCGGCCTCTGTTGATGGAAGCGCTCAATAGCGAGGACTTTGAAACTTTAGCGGATCCAAGACTAGGAAAGAACTACAATAGAAACGAAATGTTTAGGATGATTGAGGCTGCTGCGGCCTGTGTGCGTCACTCCTCAGTTAAAAGGCCAAAGATGAGTCAGGTTGTGAGAGCTTTCGATTCCATGGACGAGTTTTCAGATCTGAATAACGGAATGATACCGGGACAGAGTTCAGTGTTTGATTCTGCACAGCAATCTGCACAGATCAGAATGTTTAGGAGGATGGCTTTTGGAAGCCAAGATAGTTCTGCTTCCAGTTTCCTTAATGAGTCTCAAAGTAGTTATAGGACTAGGGACCAAGACTCTACAAGTATATTTCCTCAAAATAAATCTAGGTCTTGGAACTTTCGAGATGACGCTTAA

Protein sequence

>Msa1097200

MATITLSPNGSPVALPPSSGAAVLPPTTSSQSNQTTNSPPPSVPPLSTTVPVTPPPSPSLSPPPLLTTPPPASPPPASSPPPIVTSPPPASPAPPVVTSPPPTPAATAPPPAETSPSIPNLSPPPPSAGSPPPQPSKPPPSESVSPSPPPPAPKPPSTKPPPPTPQAKPPKSNTPSPPSHDAPPPSVSKSPPSPSTDVPPPSTLPSTPPSVPSESAAPPAVPSGSAAPPAVPSGSAAPPAASLPRPPRNETVAAGGPTVSLPSIPTEKPTARPTVDGSGNAATSNAPSNSGGLNTGGAVAIGVVVSVVVISLLVMAVLFVRKKKKGKRPIADYAAPSPFTSSHNSGTLFLKPQPQSPANFIGSGNGSEFVYSPSEPGGVNSSRSWFTYEELIQATNGFSEQNMLGEGGFGCVYKGLLIDGREVAVKQLKIGGGQGEREFRAEVETISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHDENAPVLNWPIRVKVAAGAARGIAYLHEDYFGLAKLTLDSNTHVTTRVMGTFGYMAPEYATSGKLTDKSDVYSYGVVLLELITGRKPVDASQPIGDESLVEWARPLLMEALNSEDFETLADPRLGKNYNRNEMFRMIEAAAACVRHSSVKRPKMSQVVRAFDSMDEFSDLNNGMIPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSASSFLNESQSSYRTRDQDSTSIFPQNKSRSWNFRDDA*