Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1097510 | XP_039685680.1 | 83.980 | 799 | 108 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1097510 | sp|Q9SZL8|FRS5_ARATH | 25.786 | 636 | 402 | 12 | 32 | 665 | 70 | 637 | 2.50e-62 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1097510 | D3YBB9 | 75.713 | 807 | 179 | 4 | 1 | 798 | 49 | 847 | 0.0 | 1273 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1097510 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1097510 | MtrunA17_Chr3g0088371 | 83.696 | 184 | 27 | 1 | 618 | 798 | 1 | 184 | 9.46e-104 | 317 |
| Msa1097510 | MtrunA17_Chr2g0324011 | 30.236 | 635 | 367 | 12 | 36 | 665 | 8 | 571 | 6.81e-98 | 316 |
| Msa1097510 | MtrunA17_Chr3g0082121 | 31.259 | 691 | 387 | 19 | 41 | 727 | 49 | 655 | 2.13e-94 | 310 |
| Msa1097510 | MtrunA17_Chr1g0202341 | 29.291 | 635 | 368 | 17 | 34 | 662 | 50 | 609 | 4.00e-77 | 263 |
| Msa1097510 | MtrunA17_Chr8g0363841 | 28.254 | 630 | 377 | 14 | 40 | 665 | 22 | 580 | 2.77e-70 | 244 |
| Msa1097510 | MtrunA17_Chr1g0203721 | 25.275 | 728 | 432 | 18 | 40 | 739 | 68 | 711 | 1.47e-67 | 240 |
| Msa1097510 | MtrunA17_Chr2g0296781 | 27.541 | 679 | 406 | 20 | 39 | 708 | 1 | 602 | 1.71e-66 | 235 |
| Msa1097510 | MtrunA17_Chr5g0448761 | 24.611 | 707 | 454 | 15 | 31 | 728 | 56 | 692 | 4.09e-63 | 226 |
| Msa1097510 | MtrunA17_Chr6g0477261 | 28.492 | 537 | 326 | 14 | 180 | 709 | 7 | 492 | 5.97e-62 | 221 |
| Msa1097510 | MtrunA17_Chr6g0458391 | 26.266 | 632 | 359 | 15 | 41 | 662 | 231 | 765 | 4.05e-61 | 220 |
| Msa1097510 | MtrunA17_Chr1g0164591 | 33.750 | 320 | 197 | 4 | 131 | 448 | 1 | 307 | 4.31e-57 | 198 |
| Msa1097510 | MtrunA17_Chr2g0287651 | 25.990 | 631 | 383 | 15 | 39 | 662 | 79 | 632 | 6.17e-57 | 210 |
| Msa1097510 | MtrunA17_Chr5g0441581 | 24.324 | 777 | 472 | 23 | 14 | 773 | 12 | 689 | 1.13e-55 | 204 |
| Msa1097510 | MtrunA17_Chr1g0172971 | 81.197 | 117 | 21 | 1 | 1 | 116 | 1 | 117 | 9.43e-54 | 195 |
| Msa1097510 | MtrunA17_Chr1g0207551 | 24.929 | 706 | 418 | 22 | 31 | 718 | 30 | 641 | 8.56e-51 | 191 |
| Msa1097510 | MtrunA17_Chr5g0440451 | 23.729 | 708 | 433 | 18 | 34 | 721 | 42 | 662 | 2.32e-50 | 191 |
| Msa1097510 | MtrunA17_Chr1g0196541 | 25.000 | 628 | 395 | 17 | 39 | 662 | 1 | 556 | 2.48e-50 | 189 |
| Msa1097510 | MtrunA17_Chr1g0198761 | 26.646 | 653 | 381 | 21 | 26 | 660 | 38 | 610 | 5.80e-50 | 188 |
| Msa1097510 | MtrunA17_Chr2g0329031 | 25.271 | 645 | 386 | 18 | 22 | 658 | 1 | 557 | 2.80e-49 | 186 |
| Msa1097510 | MtrunA17_Chr3g0080351 | 24.138 | 725 | 446 | 18 | 34 | 752 | 75 | 701 | 2.60e-48 | 184 |
| Msa1097510 | MtrunA17_Chr7g0258861 | 34.314 | 306 | 177 | 6 | 36 | 336 | 8 | 294 | 2.96e-48 | 173 |
| Msa1097510 | MtrunA17_Chr3g0118611 | 26.839 | 503 | 308 | 11 | 221 | 719 | 111 | 557 | 3.00e-47 | 180 |
| Msa1097510 | MtrunA17_Chr2g0290391 | 25.545 | 642 | 375 | 19 | 38 | 660 | 54 | 611 | 5.59e-46 | 175 |
| Msa1097510 | MtrunA17_Chr1g0203051 | 22.203 | 590 | 390 | 8 | 50 | 637 | 94 | 616 | 5.04e-45 | 172 |
| Msa1097510 | MtrunA17_Chr2g0287061 | 24.286 | 630 | 358 | 18 | 41 | 665 | 189 | 704 | 7.38e-45 | 173 |
| Msa1097510 | MtrunA17_Chr2g0276841 | 25.669 | 635 | 376 | 21 | 49 | 669 | 84 | 636 | 1.04e-41 | 162 |
| Msa1097510 | MtrunA17_Chr5g0448511 | 25.885 | 452 | 281 | 12 | 216 | 665 | 1 | 400 | 1.19e-40 | 157 |
| Msa1097510 | MtrunA17_Chr5g0431001 | 27.716 | 451 | 281 | 12 | 40 | 473 | 66 | 488 | 1.90e-40 | 156 |
| Msa1097510 | MtrunA17_Chr2g0291581 | 23.124 | 653 | 416 | 14 | 16 | 662 | 49 | 621 | 7.65e-40 | 157 |
| Msa1097510 | MtrunA17_Chr6g0475591 | 89.041 | 73 | 8 | 0 | 188 | 260 | 1 | 73 | 1.40e-38 | 137 |
| Msa1097510 | MtrunA17_Chr2g0291591 | 25.630 | 476 | 301 | 12 | 37 | 499 | 66 | 501 | 2.19e-37 | 148 |
| Msa1097510 | MtrunA17_Chr2g0294841 | 26.653 | 499 | 313 | 15 | 7 | 482 | 11 | 479 | 5.02e-34 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1097510 | AT4G38180.1 | 25.786 | 636 | 402 | 12 | 32 | 665 | 70 | 637 | 2.55e-63 | 227 |
| Msa1097510 | AT4G15090.1 | 24.893 | 699 | 432 | 16 | 50 | 741 | 66 | 678 | 6.13e-55 | 204 |
| Msa1097510 | AT4G15090.5 | 24.893 | 699 | 432 | 16 | 50 | 741 | 66 | 678 | 6.13e-55 | 204 |
| Msa1097510 | AT4G15090.3 | 24.893 | 699 | 432 | 16 | 50 | 741 | 66 | 678 | 6.13e-55 | 204 |
| Msa1097510 | AT4G15090.2 | 24.893 | 699 | 432 | 16 | 50 | 741 | 66 | 678 | 6.13e-55 | 204 |
| Msa1097510 | AT4G15090.4 | 24.893 | 699 | 432 | 16 | 50 | 741 | 66 | 678 | 6.13e-55 | 204 |
| Msa1097510 | AT3G06250.2 | 24.645 | 633 | 354 | 16 | 34 | 661 | 189 | 703 | 1.01e-49 | 187 |
| Msa1097510 | AT3G06250.1 | 24.645 | 633 | 354 | 16 | 34 | 661 | 189 | 703 | 1.01e-49 | 187 |
| Msa1097510 | AT3G06250.3 | 24.645 | 633 | 354 | 16 | 34 | 661 | 189 | 703 | 1.01e-49 | 187 |
| Msa1097510 | AT2G27110.2 | 24.958 | 597 | 374 | 14 | 127 | 719 | 108 | 634 | 3.58e-48 | 184 |
| Msa1097510 | AT2G27110.1 | 24.958 | 597 | 374 | 14 | 127 | 719 | 108 | 634 | 3.58e-48 | 184 |
| Msa1097510 | AT2G27110.3 | 25.933 | 509 | 320 | 10 | 213 | 719 | 36 | 489 | 1.09e-47 | 181 |
| Msa1097510 | AT1G76320.3 | 23.929 | 677 | 419 | 18 | 50 | 720 | 12 | 598 | 6.57e-45 | 172 |
| Msa1097510 | AT3G22170.2 | 22.107 | 769 | 474 | 20 | 1 | 753 | 32 | 691 | 1.87e-44 | 172 |
| Msa1097510 | AT3G22170.1 | 22.107 | 769 | 474 | 20 | 1 | 753 | 32 | 691 | 1.87e-44 | 172 |
| Msa1097510 | AT1G76320.2 | 23.964 | 676 | 418 | 18 | 50 | 719 | 12 | 597 | 2.00e-44 | 172 |
| Msa1097510 | AT1G76320.1 | 23.964 | 676 | 418 | 18 | 50 | 719 | 12 | 597 | 2.25e-44 | 171 |
| Msa1097510 | AT1G76320.4 | 23.964 | 676 | 418 | 18 | 50 | 719 | 12 | 597 | 2.25e-44 | 171 |
| Msa1097510 | AT5G18960.2 | 23.566 | 645 | 369 | 18 | 24 | 661 | 200 | 727 | 4.00e-44 | 171 |
| Msa1097510 | AT5G18960.1 | 23.566 | 645 | 369 | 18 | 24 | 661 | 200 | 727 | 4.00e-44 | 171 |
| Msa1097510 | AT5G28530.1 | 24.100 | 639 | 388 | 18 | 40 | 660 | 60 | 619 | 1.29e-40 | 159 |
| Msa1097510 | AT4G38170.1 | 24.826 | 431 | 266 | 10 | 235 | 662 | 24 | 399 | 1.88e-40 | 157 |
| Msa1097510 | AT5G28530.3 | 23.944 | 639 | 385 | 19 | 40 | 660 | 60 | 615 | 9.02e-40 | 157 |
| Msa1097510 | AT5G28530.2 | 23.944 | 639 | 385 | 19 | 40 | 660 | 60 | 615 | 9.02e-40 | 157 |
| Msa1097510 | AT1G10240.2 | 24.840 | 624 | 375 | 21 | 49 | 659 | 62 | 604 | 5.70e-38 | 151 |
| Msa1097510 | AT1G10240.1 | 24.840 | 624 | 375 | 21 | 49 | 659 | 62 | 604 | 5.70e-38 | 151 |
| Msa1097510 | AT2G32250.5 | 23.467 | 750 | 432 | 23 | 1 | 743 | 8 | 622 | 5.80e-38 | 152 |
| Msa1097510 | AT2G32250.2 | 23.467 | 750 | 432 | 23 | 1 | 743 | 8 | 622 | 1.04e-37 | 152 |
| Msa1097510 | AT2G32250.4 | 23.467 | 750 | 432 | 23 | 1 | 743 | 8 | 622 | 1.04e-37 | 152 |
| Msa1097510 | AT2G32250.6 | 23.467 | 750 | 432 | 23 | 1 | 743 | 8 | 622 | 1.16e-37 | 151 |
| Msa1097510 | AT2G32250.1 | 23.467 | 750 | 432 | 23 | 1 | 743 | 8 | 622 | 1.16e-37 | 151 |
| Msa1097510 | AT2G32250.3 | 23.467 | 750 | 432 | 23 | 1 | 743 | 8 | 622 | 1.16e-37 | 151 |
| Msa1097510 | AT2G32250.8 | 23.521 | 710 | 405 | 21 | 41 | 743 | 3 | 581 | 3.12e-37 | 150 |
| Msa1097510 | AT2G32250.7 | 23.521 | 710 | 405 | 21 | 41 | 743 | 3 | 581 | 3.13e-37 | 150 |
| Msa1097510 | AT1G80010.1 | 23.474 | 639 | 394 | 22 | 41 | 662 | 101 | 661 | 1.57e-33 | 138 |
| Msa1097510 | AT1G52520.1 | 22.468 | 632 | 396 | 19 | 41 | 662 | 91 | 638 | 2.08e-30 | 128 |
| Msa1097510 | AT4G19990.3 | 23.400 | 453 | 284 | 11 | 41 | 483 | 27 | 426 | 3.08e-24 | 109 |
| Msa1097510 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 8.01e-13 | 72.8 |
| Msa1097510 | AT4G19990.4 | 23.400 | 453 | 284 | 11 | 41 | 483 | 27 | 426 | 3.08e-24 | 109 |
| Msa1097510 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 8.01e-13 | 72.8 |
| Msa1097510 | AT4G19990.7 | 23.400 | 453 | 284 | 11 | 41 | 483 | 41 | 440 | 3.48e-24 | 109 |
| Msa1097510 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 8.68e-13 | 72.8 |
| Msa1097510 | AT4G19990.5 | 23.400 | 453 | 284 | 11 | 41 | 483 | 27 | 426 | 3.50e-24 | 108 |
| Msa1097510 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 8.43e-13 | 72.8 |
| Msa1097510 | AT4G19990.6 | 23.400 | 453 | 284 | 11 | 41 | 483 | 27 | 426 | 5.26e-24 | 108 |
| Msa1097510 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 8.30e-13 | 72.8 |
| Msa1097510 | AT4G19990.2 | 23.400 | 453 | 284 | 11 | 41 | 483 | 27 | 426 | 5.26e-24 | 108 |
| Msa1097510 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 8.30e-13 | 72.8 |
| Msa1097510 | AT4G19990.1 | 27.612 | 268 | 187 | 4 | 219 | 483 | 106 | 369 | 7.67e-24 | 107 |
| Msa1097510 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 7.65e-13 | 72.8 |
Find 118 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 7_3:-22793485 | Msa1097510:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 7_3:+22792350 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 7_3:-22793218 | Msa1097510:CDS |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 7_3:-22793766 | Msa1097510:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 7_3:-22794290 | Msa1097510:CDS |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 7_3:-22793733 | Msa1097510:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 7_3:+22793639 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 7_3:+22792356 | None:intergenic |
| GGTTTCAAATGTTGATGTTT+TGG | 0.317051 | 7_3:-22792921 | Msa1097510:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 7_3:-22792504 | Msa1097510:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.339668 | 7_3:+22792628 | None:intergenic |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 7_3:+22793621 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 7_3:+22794240 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 7_3:-22792107 | Msa1097510:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 7_3:+22792288 | None:intergenic |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 7_3:-22793185 | Msa1097510:CDS |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 7_3:-22793344 | Msa1097510:CDS |
| AATTCTTGATTGTTATGTAT+TGG | 0.372244 | 7_3:-22792126 | Msa1097510:three_prime_UTR |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 7_3:-22792512 | Msa1097510:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 7_3:-22794233 | Msa1097510:intron |
| TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 7_3:-22793176 | Msa1097510:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 7_3:-22794241 | Msa1097510:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 7_3:-22795153 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 7_3:-22793345 | Msa1097510:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 7_3:+22794770 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 7_3:-22792364 | Msa1097510:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 7_3:+22792374 | None:intergenic |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 7_3:-22792479 | Msa1097510:CDS |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 7_3:+22795009 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 7_3:-22794999 | Msa1097510:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 7_3:-22792796 | Msa1097510:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 7_3:+22792873 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 7_3:-22794928 | Msa1097510:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 7_3:+22792872 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 7_3:-22794593 | Msa1097510:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 7_3:-22794711 | Msa1097510:CDS |
| GGGTTGTCATAGTCGACATT+AGG | 0.437838 | 7_3:-22792838 | Msa1097510:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 7_3:-22794679 | Msa1097510:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 7_3:+22793628 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 7_3:-22794728 | Msa1097510:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 7_3:+22792695 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 7_3:-22794845 | Msa1097510:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 7_3:-22794563 | Msa1097510:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 7_3:-22795074 | Msa1097510:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 7_3:-22793554 | Msa1097510:CDS |
| CTCCTCAAAATAGTATTTGA+AGG | 0.453936 | 7_3:+22793042 | None:intergenic |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 7_3:-22792795 | Msa1097510:CDS |
| GGCCTACTTCAGACTTTAAG+TGG | 0.462107 | 7_3:-22793390 | Msa1097510:CDS |
| CGCAAACACGTGTAGAAAGC+TGG | 0.465682 | 7_3:+22792561 | None:intergenic |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 7_3:-22794879 | Msa1097510:CDS |
| TTTGAGGAGGACACAACAAA+AGG | 0.469432 | 7_3:-22793028 | Msa1097510:CDS |
| GCTGTCTGTGAGCCATCTGT+TGG | 0.470881 | 7_3:-22792404 | Msa1097510:CDS |
| CTGTCTGTGAGCCATCTGTT+GGG | 0.478819 | 7_3:-22792403 | Msa1097510:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 7_3:+22794734 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 7_3:-22794941 | Msa1097510:CDS |
| TCTAATGACGACTCGTCAAA+AGG | 0.488508 | 7_3:-22794450 | Msa1097510:CDS |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 7_3:-22794885 | Msa1097510:CDS |
| ACATTATGGTTCAAAGAATG+AGG | 0.490425 | 7_3:-22793204 | Msa1097510:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 7_3:+22793753 | None:intergenic |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 7_3:-22794437 | Msa1097510:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 7_3:+22794345 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 7_3:-22793357 | Msa1097510:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 7_3:-22792859 | Msa1097510:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 7_3:+22794479 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 7_3:-22793339 | Msa1097510:CDS |
| GATCGCATAAGCTGACTGTT+GGG | 0.510610 | 7_3:+22793124 | None:intergenic |
| AATGAAGCTCTCTCGAAACT+AGG | 0.513613 | 7_3:-22794383 | Msa1097510:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 7_3:+22792879 | None:intergenic |
| CAAAATAGTATTTGAAGGAA+AGG | 0.519540 | 7_3:+22793047 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 7_3:+22793236 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 7_3:-22794675 | Msa1097510:CDS |
| AAATGCTCTGCTTTATGTAA+TGG | 0.525118 | 7_3:+22794635 | None:intergenic |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 7_3:-22792858 | Msa1097510:CDS |
| TTGAGGAGGACACAACAAAA+GGG | 0.529908 | 7_3:-22793027 | Msa1097510:CDS |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 7_3:-22792298 | Msa1097510:CDS |
| CTGAAATCTACCATGAATGT+TGG | 0.534154 | 7_3:-22792638 | Msa1097510:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 7_3:-22794834 | Msa1097510:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 7_3:+22793241 | None:intergenic |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 7_3:-22795009 | Msa1097510:CDS |
| GGATCGCATAAGCTGACTGT+TGG | 0.544308 | 7_3:+22793123 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 7_3:-22794833 | Msa1097510:CDS |
| GAGAACATCTTATGAAGTGA+TGG | 0.551307 | 7_3:-22794531 | Msa1097510:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 7_3:+22793608 | None:intergenic |
| GGGTGAAGGTGTTGGAGGCA+CGG | 0.565649 | 7_3:-22794510 | Msa1097510:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 7_3:-22792552 | Msa1097510:CDS |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 7_3:-22792273 | Msa1097510:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 7_3:+22793102 | None:intergenic |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 7_3:-22792511 | Msa1097510:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 7_3:-22793622 | Msa1097510:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 7_3:-22792516 | Msa1097510:CDS |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 7_3:-22792211 | Msa1097510:three_prime_UTR |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.595102 | 7_3:+22792392 | None:intergenic |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 7_3:+22792436 | None:intergenic |
| TTGAAGGAAACCTTTCCCCA+AGG | 0.600566 | 7_3:-22792889 | Msa1097510:CDS |
| GAAGTGATGGGTGAAGGTGT+TGG | 0.603704 | 7_3:-22794518 | Msa1097510:CDS |
| GACGACTCGTCAAAAGGAGA+TGG | 0.604288 | 7_3:-22794444 | Msa1097510:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 7_3:-22792549 | Msa1097510:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.609132 | 7_3:-22792943 | Msa1097510:CDS |
| CATTATGGTTCAAAGAATGA+GGG | 0.609190 | 7_3:-22793203 | Msa1097510:CDS |
| GACTCGTCAAAAGGAGATGG+TGG | 0.611157 | 7_3:-22794441 | Msa1097510:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 7_3:-22795085 | Msa1097510:CDS |
| AGCCACTTAAAGTCTGAAGT+AGG | 0.617789 | 7_3:+22793388 | None:intergenic |
| TGTTGATAATGATAATGAGA+GGG | 0.618346 | 7_3:-22792942 | Msa1097510:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 7_3:+22794785 | None:intergenic |
| GTGATGGGTGAAGGTGTTGG+AGG | 0.621481 | 7_3:-22794515 | Msa1097510:CDS |
| TGAGGCTTTAACAATTTAAG+CGG | 0.624327 | 7_3:-22792255 | Msa1097510:exon |
| TGAAAATTCAGTTATTGACG+TGG | 0.624344 | 7_3:-22795050 | Msa1097510:CDS |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 7_3:+22792874 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 7_3:-22793553 | Msa1097510:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.643044 | 7_3:-22794530 | Msa1097510:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 7_3:-22794676 | Msa1097510:CDS |
| GCATCTAAAATATTTCTCAA+CGG | 0.643711 | 7_3:-22792527 | Msa1097510:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 7_3:+22792653 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 7_3:+22793082 | None:intergenic |
| TCTTATGAAGTGATGGGTGA+AGG | 0.656961 | 7_3:-22794524 | Msa1097510:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 7_3:+22792777 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 7_3:-22793626 | Msa1097510:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 7_3:-22792794 | Msa1097510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr7_3:22795022-22795041 | Msa1097510:CDS | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr7_3:22792305-22792324 | Msa1097510:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr7_3:22792361-22792380 | Msa1097510:CDS | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr7_3:22792567-22792586 | Msa1097510:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr7_3:22793160-22793179 | Msa1097510:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+TGG | - | chr7_3:22793188-22793207 | Msa1097510:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr7_3:22793831-22793850 | Msa1097510:intron | 20.0% |
| !! | AATTCTTGATTGTTATGTAT+TGG | - | chr7_3:22795120-22795139 | Msa1097510:five_prime_UTR | 20.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr7_3:22792357-22792376 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr7_3:22792367-22792386 | Msa1097510:CDS | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr7_3:22792570-22792589 | Msa1097510:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr7_3:22792571-22792590 | Msa1097510:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr7_3:22792683-22792702 | Msa1097510:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr7_3:22792918-22792937 | Msa1097510:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr7_3:22792919-22792938 | Msa1097510:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr7_3:22793005-22793024 | Msa1097510:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr7_3:22793031-22793050 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr7_3:22793078-22793097 | Msa1097510:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr7_3:22793180-22793199 | Msa1097510:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr7_3:22793451-22793470 | Msa1097510:CDS | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr7_3:22793669-22793688 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr7_3:22793761-22793780 | Msa1097510:intron | 25.0% |
| !!! | AATCAGATTTTGACTACAAT+TGG | - | chr7_3:22793802-22793821 | Msa1097510:intron | 25.0% |
| !!! | ATCAGATTTTGACTACAATT+GGG | - | chr7_3:22793803-22793822 | Msa1097510:intron | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr7_3:22793835-22793854 | Msa1097510:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr7_3:22794028-22794047 | Msa1097510:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr7_3:22794167-22794186 | None:intergenic | 25.0% |
| ! | CAAAATAGTATTTGAAGGAA+AGG | + | chr7_3:22794202-22794221 | None:intergenic | 25.0% |
| !! | TTCCTTCAAATACTATTTTG+AGG | - | chr7_3:22794202-22794221 | Msa1097510:intron | 25.0% |
| !! | CAAAGTTTTTACAATTGAGA+AGG | - | chr7_3:22794262-22794281 | Msa1097510:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr7_3:22794303-22794322 | Msa1097510:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr7_3:22794304-22794323 | Msa1097510:CDS | 25.0% |
| !! | GCATCTAAAATATTTCTCAA+CGG | - | chr7_3:22794719-22794738 | Msa1097510:CDS | 25.0% |
| ! | AAAGTGATTATGAAAAAGCT+AGG | - | chr7_3:22794921-22794940 | Msa1097510:CDS | 25.0% |
| ! | AAGTGATTATGAAAAAGCTA+GGG | - | chr7_3:22794922-22794941 | Msa1097510:CDS | 25.0% |
| TGAAAATTCAGTTATTGACG+TGG | - | chr7_3:22792196-22792215 | Msa1097510:three_prime_UTR | 30.0% | |
| CCATGATTCTTTATCACTAA+AGG | + | chr7_3:22792240-22792259 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | - | chr7_3:22792237-22792256 | Msa1097510:three_prime_UTR | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr7_3:22792247-22792266 | Msa1097510:exon | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr7_3:22792412-22792431 | Msa1097510:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr7_3:22792413-22792432 | Msa1097510:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr7_3:22792502-22792521 | Msa1097510:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr7_3:22792535-22792554 | Msa1097510:CDS | 30.0% |
| AAATGCTCTGCTTTATGTAA+TGG | + | chr7_3:22792614-22792633 | None:intergenic | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | - | chr7_3:22792716-22792735 | Msa1097510:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr7_3:22792760-22792779 | Msa1097510:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr7_3:22792770-22792789 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr7_3:22792956-22792975 | Msa1097510:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr7_3:22793009-22793028 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr7_3:22793013-22793032 | Msa1097510:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr7_3:22793092-22793111 | Msa1097510:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr7_3:22793117-22793136 | Msa1097510:CDS | 30.0% | |
| CACAAATTCTAAGTCAAGAT+AGG | + | chr7_3:22793218-22793237 | None:intergenic | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr7_3:22793251-22793270 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCTCAA+TGG | - | chr7_3:22793410-22793429 | Msa1097510:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr7_3:22793496-22793515 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr7_3:22793610-22793629 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr7_3:22793660-22793679 | Msa1097510:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr7_3:22793672-22793691 | Msa1097510:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr7_3:22793717-22793736 | Msa1097510:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr7_3:22794013-22794032 | None:intergenic | 30.0% | |
| ACATTATGGTTCAAAGAATG+AGG | - | chr7_3:22794042-22794061 | Msa1097510:intron | 30.0% | |
| CATTATGGTTCAAAGAATGA+GGG | - | chr7_3:22794043-22794062 | Msa1097510:intron | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr7_3:22794147-22794166 | None:intergenic | 30.0% | |
| CTCCTCAAAATAGTATTTGA+AGG | + | chr7_3:22794207-22794226 | None:intergenic | 30.0% | |
| !! | CTTCAAATACTATTTTGAGG+AGG | - | chr7_3:22794205-22794224 | Msa1097510:intron | 30.0% |
| ! | GGTTTCAAATGTTGATGTTT+TGG | - | chr7_3:22794325-22794344 | Msa1097510:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr7_3:22794375-22794394 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr7_3:22794376-22794395 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr7_3:22794387-22794406 | Msa1097510:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr7_3:22794388-22794407 | Msa1097510:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr7_3:22794484-22794503 | Msa1097510:CDS | 30.0% |
| !!! | TTCAAGATTTTGGAGTTCTT+AGG | - | chr7_3:22794494-22794513 | Msa1097510:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr7_3:22794552-22794571 | Msa1097510:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr7_3:22794767-22794786 | Msa1097510:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr7_3:22794875-22794894 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr7_3:22794882-22794901 | Msa1097510:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr7_3:22794893-22794912 | None:intergenic | 30.0% | |
| ! | TGAGGCTTTAACAATTTAAG+CGG | - | chr7_3:22794991-22795010 | Msa1097510:CDS | 30.0% |
| ATAAGTTAGGAAAGATGATG+AGG | - | chr7_3:22795035-22795054 | Msa1097510:CDS | 30.0% | |
| ! | TGAGGCTTTAACTAAAAAAG+CGG | - | chr7_3:22795053-22795072 | Msa1097510:CDS | 30.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | - | chr7_3:22792133-22792152 | Msa1097510:three_prime_UTR | 35.0% |
| ATATCAACTTCATCTGAGAG+TGG | - | chr7_3:22792161-22792180 | Msa1097510:three_prime_UTR | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr7_3:22792318-22792337 | Msa1097510:CDS | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr7_3:22792401-22792420 | Msa1097510:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr7_3:22792438-22792457 | Msa1097510:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr7_3:22792479-22792498 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr7_3:22792496-22792515 | Msa1097510:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr7_3:22792501-22792520 | Msa1097510:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr7_3:22792653-22792672 | Msa1097510:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr7_3:22792715-22792734 | Msa1097510:CDS | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr7_3:22793513-22793532 | Msa1097510:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr7_3:22793685-22793704 | Msa1097510:CDS | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | chr7_3:22793889-22793908 | Msa1097510:intron | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr7_3:22793902-22793921 | Msa1097510:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr7_3:22793972-22793991 | Msa1097510:intron | 35.0% |
| CGATTATGATCTTCAAACCT+TGG | + | chr7_3:22794377-22794396 | None:intergenic | 35.0% | |
| !!! | AAGATTTTGGAGTTCTTAGG+TGG | - | chr7_3:22794497-22794516 | Msa1097510:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr7_3:22794554-22794573 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr7_3:22794555-22794574 | Msa1097510:CDS | 35.0% |
| CTGAAATCTACCATGAATGT+TGG | - | chr7_3:22794608-22794627 | Msa1097510:CDS | 35.0% | |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr7_3:22794821-22794840 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | - | chr7_3:22794948-22794967 | Msa1097510:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr7_3:22794973-22794992 | Msa1097510:CDS | 35.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr7_3:22792172-22792191 | Msa1097510:three_prime_UTR | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr7_3:22792452-22792471 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTGA+AGG | - | chr7_3:22792722-22792741 | Msa1097510:CDS | 40.0% |
| TCTAATGACGACTCGTCAAA+AGG | - | chr7_3:22792796-22792815 | Msa1097510:CDS | 40.0% | |
| AATGAAGCTCTCTCGAAACT+AGG | - | chr7_3:22792863-22792882 | Msa1097510:CDS | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr7_3:22792926-22792945 | Msa1097510:CDS | 40.0% |
| ! | TGGTTTAGAATTGAAGGCTC+TGG | - | chr7_3:22793098-22793117 | Msa1097510:CDS | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr7_3:22793345-22793364 | Msa1097510:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr7_3:22793349-22793368 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr7_3:22793480-22793499 | Msa1097510:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr7_3:22793621-22793640 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr7_3:22793620-22793639 | Msa1097510:CDS | 40.0% | |
| ! | AGCCACTTAAAGTCTGAAGT+AGG | + | chr7_3:22793861-22793880 | None:intergenic | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr7_3:22793901-22793920 | Msa1097510:intron | 40.0% |
| ! | GTGAGGTCACATTTTACAAC+TGG | - | chr7_3:22793924-22793943 | Msa1097510:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr7_3:22794008-22794027 | None:intergenic | 40.0% | |
| ! | GAGGGATAATCATGCTGATT+TGG | - | chr7_3:22794061-22794080 | Msa1097510:intron | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | - | chr7_3:22794070-22794089 | Msa1097510:intron | 40.0% |
| TTTGAGGAGGACACAACAAA+AGG | - | chr7_3:22794218-22794237 | Msa1097510:intron | 40.0% | |
| TTGAGGAGGACACAACAAAA+GGG | - | chr7_3:22794219-22794238 | Msa1097510:intron | 40.0% | |
| !! | GTTTTGGATGCAGAACTTGA+AGG | - | chr7_3:22794341-22794360 | Msa1097510:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr7_3:22794450-22794469 | Msa1097510:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr7_3:22794451-22794470 | Msa1097510:CDS | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | + | chr7_3:22794596-22794615 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr7_3:22794621-22794640 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr7_3:22794730-22794749 | Msa1097510:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr7_3:22794813-22794832 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr7_3:22794899-22794918 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr7_3:22794961-22794980 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr7_3:22792464-22792483 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr7_3:22792506-22792525 | Msa1097510:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr7_3:22792515-22792534 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr7_3:22792518-22792537 | Msa1097510:CDS | 45.0% |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr7_3:22792904-22792923 | None:intergenic | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | - | chr7_3:22793231-22793250 | Msa1097510:CDS | 45.0% | |
| GGCCTACTTCAGACTTTAAG+TGG | - | chr7_3:22793856-22793875 | Msa1097510:intron | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr7_3:22793907-22793926 | Msa1097510:intron | 45.0% |
| GATCGCATAAGCTGACTGTT+GGG | + | chr7_3:22794125-22794144 | None:intergenic | 45.0% | |
| TTGAAGGAAACCTTTCCCCA+AGG | - | chr7_3:22794357-22794376 | Msa1097510:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr7_3:22794370-22794389 | None:intergenic | 45.0% | |
| GGGTTGTCATAGTCGACATT+AGG | - | chr7_3:22794408-22794427 | Msa1097510:CDS | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr7_3:22794452-22794471 | Msa1097510:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr7_3:22794472-22794491 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr7_3:22794742-22794761 | Msa1097510:CDS | 45.0% | |
| !! | GAAGTGATGGGTGAAGGTGT+TGG | - | chr7_3:22792728-22792747 | Msa1097510:CDS | 50.0% |
| GACGACTCGTCAAAAGGAGA+TGG | - | chr7_3:22792802-22792821 | Msa1097510:CDS | 50.0% | |
| GACTCGTCAAAAGGAGATGG+TGG | - | chr7_3:22792805-22792824 | Msa1097510:CDS | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | chr7_3:22793624-22793643 | Msa1097510:CDS | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr7_3:22793628-22793647 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr7_3:22793692-22793711 | Msa1097510:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr7_3:22793693-22793712 | Msa1097510:CDS | 50.0% | |
| GGATCGCATAAGCTGACTGT+TGG | + | chr7_3:22794126-22794145 | None:intergenic | 50.0% | |
| CGCAAACACGTGTAGAAAGC+TGG | + | chr7_3:22794688-22794707 | None:intergenic | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr7_3:22794694-22794713 | Msa1097510:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr7_3:22794735-22794754 | Msa1097510:CDS | 50.0% | |
| CTGTCTGTGAGCCATCTGTT+GGG | - | chr7_3:22794843-22794862 | Msa1097510:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr7_3:22794857-22794876 | None:intergenic | 50.0% |
| !! | GTGATGGGTGAAGGTGTTGG+AGG | - | chr7_3:22792731-22792750 | Msa1097510:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr7_3:22792809-22792828 | Msa1097510:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr7_3:22793641-22793660 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr7_3:22794734-22794753 | Msa1097510:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr7_3:22794748-22794767 | Msa1097510:CDS | 55.0% | |
| GCTGTCTGTGAGCCATCTGT+TGG | - | chr7_3:22794842-22794861 | Msa1097510:CDS | 55.0% | |
| !! | GGGTGAAGGTGTTGGAGGCA+CGG | - | chr7_3:22792736-22792755 | Msa1097510:CDS | 60.0% |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr7_3:22794697-22794716 | Msa1097510:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 22792107 | 22795161 | 22792107 | ID=Msa1097510;Name=Msa1097510 |
| chr7_3 | mRNA | 22792107 | 22795161 | 22792107 | ID=Msa1097510-mRNA-1;Parent=Msa1097510;Name=Msa1097510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|2|152|800 |
| chr7_3 | exon | 22792107 | 22793778 | 22792107 | ID=Msa1097510-mRNA-1:exon:5071;Parent=Msa1097510-mRNA-1 |
| chr7_3 | exon | 22794234 | 22795161 | 22794234 | ID=Msa1097510-mRNA-1:exon:5070;Parent=Msa1097510-mRNA-1 |
| chr7_3 | five_prime_UTR | 22795117 | 22795161 | 22795117 | ID=Msa1097510-mRNA-1:five_prime_utr;Parent=Msa1097510-mRNA-1 |
| chr7_3 | CDS | 22794234 | 22795116 | 22794234 | ID=Msa1097510-mRNA-1:cds;Parent=Msa1097510-mRNA-1 |
| chr7_3 | CDS | 22792259 | 22793778 | 22792259 | ID=Msa1097510-mRNA-1:cds;Parent=Msa1097510-mRNA-1 |
| chr7_3 | three_prime_UTR | 22792107 | 22792258 | 22792107 | ID=Msa1097510-mRNA-1:three_prime_utr;Parent=Msa1097510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
