Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1097990 | XP_003621577.1 | 93.123 | 349 | 17 | 2 | 1 | 344 | 1 | 347 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1097990 | sp|Q9CAA4|BIM2_ARATH | 40.062 | 322 | 137 | 10 | 3 | 308 | 2 | 283 | 2.85e-51 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1097990 | G7KRZ1 | 93.123 | 349 | 17 | 2 | 1 | 344 | 1 | 347 | 0.0 | 592 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1097990 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1097990 | MtrunA17_Chr7g0220371 | 93.123 | 349 | 17 | 2 | 1 | 344 | 1 | 347 | 0.0 | 592 |
| Msa1097990 | MtrunA17_Chr5g0420701 | 39.759 | 332 | 158 | 9 | 27 | 340 | 25 | 332 | 1.88e-59 | 194 |
| Msa1097990 | MtrunA17_Chr4g0061791 | 39.189 | 370 | 174 | 15 | 1 | 340 | 218 | 566 | 2.13e-50 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1097990 | AT1G69010.1 | 40.062 | 322 | 137 | 10 | 3 | 308 | 2 | 283 | 2.90e-52 | 175 |
| Msa1097990 | AT5G38860.1 | 37.294 | 303 | 151 | 8 | 47 | 341 | 27 | 298 | 4.28e-49 | 167 |
| Msa1097990 | AT5G08130.3 | 35.831 | 307 | 154 | 8 | 1 | 298 | 103 | 375 | 7.74e-40 | 145 |
| Msa1097990 | AT5G08130.1 | 35.505 | 307 | 156 | 8 | 1 | 298 | 103 | 376 | 1.98e-39 | 144 |
| Msa1097990 | AT5G08130.5 | 35.831 | 307 | 154 | 8 | 1 | 298 | 227 | 499 | 6.22e-39 | 145 |
| Msa1097990 | AT5G08130.7 | 35.831 | 307 | 154 | 8 | 1 | 298 | 223 | 495 | 6.30e-39 | 145 |
| Msa1097990 | AT5G08130.8 | 35.505 | 307 | 156 | 8 | 1 | 298 | 227 | 500 | 1.29e-38 | 144 |
| Msa1097990 | AT5G08130.6 | 35.505 | 307 | 156 | 8 | 1 | 298 | 223 | 496 | 1.46e-38 | 144 |
| Msa1097990 | AT5G08130.2 | 35.505 | 307 | 156 | 8 | 1 | 298 | 223 | 496 | 1.47e-38 | 144 |
| Msa1097990 | AT5G08130.4 | 35.505 | 307 | 156 | 8 | 1 | 298 | 223 | 496 | 1.47e-38 | 144 |
| Msa1097990 | AT5G38860.2 | 42.857 | 189 | 93 | 4 | 47 | 220 | 27 | 215 | 1.29e-36 | 132 |
Find 93 sgRNAs with CRISPR-Local
Find 351 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTAACTTGTGTAAGTATT+TGG | 0.142194 | 7_3:-24282805 | Msa1097990:three_prime_UTR |
| GCTTCTCTTCTGAACCTCTT+TGG | 0.254372 | 7_3:+24283051 | None:intergenic |
| TCATGTTTAAACAGAATATT+AGG | 0.257906 | 7_3:-24284380 | Msa1097990:intron |
| CATTCTCGAGCTATTCAAAA+TGG | 0.263201 | 7_3:-24286385 | Msa1097990:CDS |
| TGGAGGGGTCAGACATTATT+GGG | 0.290265 | 7_3:+24286308 | None:intergenic |
| CAACCAATTCTTCATCTTGA+TGG | 0.291614 | 7_3:+24288710 | None:intergenic |
| ATCAAGTACCTCCAATAAAA+AGG | 0.295735 | 7_3:+24287692 | None:intergenic |
| GAGCTTATTTATAACTTGTT+TGG | 0.306158 | 7_3:-24282837 | Msa1097990:three_prime_UTR |
| GTGGAGGGGTCAGACATTAT+TGG | 0.312044 | 7_3:+24286307 | None:intergenic |
| TTTGTTGAAGAAAAGGAAAA+TGG | 0.316032 | 7_3:-24288749 | Msa1097990:exon |
| TGAGTATATTCATTTCTTAC+AGG | 0.317013 | 7_3:-24287560 | Msa1097990:CDS |
| ACCCATGGAATTAATTTAGT+TGG | 0.355118 | 7_3:+24287490 | None:intergenic |
| CCTAACTTGTGTAAGTATTT+GGG | 0.362532 | 7_3:-24282804 | Msa1097990:three_prime_UTR |
| ACAATATGATTGTCCTTGTT+TGG | 0.394063 | 7_3:+24286100 | None:intergenic |
| AGGCCATCAAGATGAAGAAT+TGG | 0.415929 | 7_3:-24288713 | Msa1097990:CDS |
| ATTCAAAATGGGTCTGTTGA+TGG | 0.420277 | 7_3:-24286373 | Msa1097990:CDS |
| CCCAAATACTTACACAAGTT+AGG | 0.420982 | 7_3:+24282804 | None:intergenic |
| CAAGTCTCCAGCCTCAAGTA+TGG | 0.421330 | 7_3:-24286132 | Msa1097990:CDS |
| TCCTTATGAAGGATGGAATC+AGG | 0.425736 | 7_3:-24287515 | Msa1097990:CDS |
| CCCTCAATCCCACTTTCACT+TGG | 0.428843 | 7_3:+24282961 | None:intergenic |
| CCAATCGCATTTGCATGGTC+AGG | 0.430055 | 7_3:+24286236 | None:intergenic |
| ACCTGAAGATTGTAGCGCTT+GGG | 0.439567 | 7_3:+24284349 | None:intergenic |
| GAGGATTTGAAAATTGATAG+TGG | 0.439987 | 7_3:-24286052 | Msa1097990:CDS |
| GTTGGTAGACGAACAAATAC+TGG | 0.440350 | 7_3:-24284287 | Msa1097990:CDS |
| ATTCAGAAAGGTTGCATCCC+TGG | 0.447634 | 7_3:-24286280 | Msa1097990:CDS |
| AGCCAACTAAATTAATTCCA+TGG | 0.454176 | 7_3:-24287492 | Msa1097990:CDS |
| ACCATACCACCGCTAACAAC+CGG | 0.455738 | 7_3:+24286202 | None:intergenic |
| TCCTGATTCCATCCTTCATA+AGG | 0.456798 | 7_3:+24287514 | None:intergenic |
| AGTGGGATTGAGGGTAGGTC+AGG | 0.461663 | 7_3:-24282952 | Msa1097990:three_prime_UTR |
| AACCTTTGAGCTATATTGAC+AGG | 0.466561 | 7_3:+24284256 | None:intergenic |
| CACCTGAAGATTGTAGCGCT+TGG | 0.468612 | 7_3:+24284348 | None:intergenic |
| ACCCAAGCGCTACAATCTTC+AGG | 0.469010 | 7_3:-24284350 | Msa1097990:CDS |
| TTGAGAGAGGAAGATGTGTT+TGG | 0.473751 | 7_3:+24288658 | None:intergenic |
| ATTTATGAACATCCTTATGA+AGG | 0.475064 | 7_3:-24287526 | Msa1097990:CDS |
| CCAAGTGAAAGTGGGATTGA+GGG | 0.482417 | 7_3:-24282961 | Msa1097990:three_prime_UTR |
| TGCTAAGCCATACTTGAGGC+TGG | 0.494117 | 7_3:+24286125 | None:intergenic |
| TGAACCCATCAGAGGGAAAA+GGG | 0.494552 | 7_3:-24288442 | Msa1097990:CDS |
| TGGAGACTTGAAGCCATGTC+AGG | 0.496880 | 7_3:+24286145 | None:intergenic |
| ATCAATTTCCACCGAGACAT+TGG | 0.500672 | 7_3:+24284310 | None:intergenic |
| ATGAACCCATCAGAGGGAAA+AGG | 0.501254 | 7_3:-24288443 | Msa1097990:CDS |
| ACTACTTCTGTGGATGAACC+AGG | 0.503685 | 7_3:+24286262 | None:intergenic |
| ATTCTCGAGCTATTCAAAAT+GGG | 0.508087 | 7_3:-24286384 | Msa1097990:CDS |
| GCCATGTCAGGATTAGATAC+AGG | 0.508965 | 7_3:+24286157 | None:intergenic |
| AATCAAGCAATGGCATGTTC+AGG | 0.511565 | 7_3:-24283108 | Msa1097990:CDS |
| CCTGACCATGCAAATGCGAT+TGG | 0.517967 | 7_3:-24286236 | Msa1097990:CDS |
| ATGAACATCCTTATGAAGGA+TGG | 0.522411 | 7_3:-24287522 | Msa1097990:CDS |
| GCGATTGGACATGTTTGATC+CGG | 0.526444 | 7_3:-24286221 | Msa1097990:CDS |
| TTTCCACCGAGACATTGGTC+TGG | 0.526791 | 7_3:+24284315 | None:intergenic |
| GCCAACTAAATTAATTCCAT+GGG | 0.528721 | 7_3:-24287491 | Msa1097990:intron |
| TCCGGTTGTTAGCGGTGGTA+TGG | 0.531955 | 7_3:-24286203 | Msa1097990:CDS |
| CAATCGCATTTGCATGGTCA+GGG | 0.532625 | 7_3:+24286237 | None:intergenic |
| ATGTTTGATCCGGTTGTTAG+CGG | 0.533535 | 7_3:-24286211 | Msa1097990:CDS |
| CTGAATGCTTAGAACGATGA+GGG | 0.533904 | 7_3:+24288415 | None:intergenic |
| GCCAAGTGAAAGTGGGATTG+AGG | 0.537711 | 7_3:-24282962 | Msa1097990:three_prime_UTR |
| TTGTGACTTGGCAGTGAAGG+TGG | 0.545492 | 7_3:-24288466 | Msa1097990:intron |
| GCAACCTTTCTGAATAGTTG+TGG | 0.548890 | 7_3:+24286288 | None:intergenic |
| TTCCACCGAGACATTGGTCT+GGG | 0.553185 | 7_3:+24284316 | None:intergenic |
| TCTCAAGTGCCTACTCTCAA+AGG | 0.555019 | 7_3:-24286012 | Msa1097990:intron |
| ATTATTGTTGTTGTTGAGAG+AGG | 0.566468 | 7_3:+24288645 | None:intergenic |
| ACCTTTCTGAATAGTTGTGG+AGG | 0.568104 | 7_3:+24286291 | None:intergenic |
| AAAATGGCTAGGTCTGCTAA+AGG | 0.571124 | 7_3:-24288733 | Msa1097990:CDS |
| GATGTTGAGCCAAGTGAAAG+TGG | 0.572351 | 7_3:-24282970 | Msa1097990:three_prime_UTR |
| CCTTTCTGAATAGTTGTGGA+GGG | 0.573907 | 7_3:+24286292 | None:intergenic |
| CATGTCCAATCGCATTTGCA+TGG | 0.574061 | 7_3:+24286231 | None:intergenic |
| TATGGTGACTCAACAGATGC+TGG | 0.576277 | 7_3:-24286185 | Msa1097990:CDS |
| TTTGATCCGGTTGTTAGCGG+TGG | 0.584063 | 7_3:-24286208 | Msa1097990:CDS |
| TGAAGAAAAGGAAAATGGCT+AGG | 0.598883 | 7_3:-24288744 | Msa1097990:exon |
| CCCTCCACAACTATTCAGAA+AGG | 0.598886 | 7_3:-24286292 | Msa1097990:CDS |
| ACCTTTGAGCTATATTGACA+GGG | 0.600389 | 7_3:+24284257 | None:intergenic |
| GAAGAAGTAAAATTAATGAG+AGG | 0.600769 | 7_3:-24288377 | Msa1097990:intron |
| CCCCTGTCAATATAGCTCAA+AGG | 0.601053 | 7_3:-24284258 | Msa1097990:intron |
| CTTTCTGAATAGTTGTGGAG+GGG | 0.603614 | 7_3:+24286293 | None:intergenic |
| AGGTGGATGAACCCATCAGA+GGG | 0.603757 | 7_3:-24288449 | Msa1097990:CDS |
| AACAGAACAAAATGAACATG+AGG | 0.609065 | 7_3:+24283011 | None:intergenic |
| TCTGAATGCTTAGAACGATG+AGG | 0.614104 | 7_3:+24288414 | None:intergenic |
| ATGGCTTAGCAAACCAAACA+AGG | 0.619238 | 7_3:-24286113 | Msa1097990:CDS |
| GCCTGTATCTAATCCTGACA+TGG | 0.619504 | 7_3:-24286158 | Msa1097990:CDS |
| AACAACAACAATAATAACAA+TGG | 0.621353 | 7_3:-24288637 | Msa1097990:intron |
| GTCTCGGTGGAAATTGATGT+TGG | 0.623639 | 7_3:-24284305 | Msa1097990:CDS |
| TTTGTCCCAGACCAATGTCT+CGG | 0.633388 | 7_3:-24284321 | Msa1097990:CDS |
| GGTCAGGGGAACTACTTCTG+TGG | 0.634643 | 7_3:+24286252 | None:intergenic |
| ATTTGTCAGCAATCAAGCAA+TGG | 0.639145 | 7_3:-24283118 | Msa1097990:CDS |
| GGTTTGCTAAGCCATACTTG+AGG | 0.640701 | 7_3:+24286121 | None:intergenic |
| GTGAAAGTGGGATTGAGGGT+AGG | 0.641391 | 7_3:-24282957 | Msa1097990:three_prime_UTR |
| ATGTTGAGCCAAGTGAAAGT+GGG | 0.646462 | 7_3:-24282969 | Msa1097990:three_prime_UTR |
| AAGGTGGATGAACCCATCAG+AGG | 0.649580 | 7_3:-24288450 | Msa1097990:CDS |
| AATCGCATTTGCATGGTCAG+GGG | 0.653290 | 7_3:+24286238 | None:intergenic |
| CTTTGAGCTATATTGACAGG+GGG | 0.658543 | 7_3:+24284259 | None:intergenic |
| AGGAATGAATTACTTCAGTG+AGG | 0.664514 | 7_3:-24283088 | Msa1097990:CDS |
| ATTCTGAACAAAGTCCAAAG+AGG | 0.673768 | 7_3:-24283065 | Msa1097990:CDS |
| CCTTTGAGCTATATTGACAG+GGG | 0.682925 | 7_3:+24284258 | None:intergenic |
| CTACTTCTGTGGATGAACCA+GGG | 0.695417 | 7_3:+24286263 | None:intergenic |
| GTCCCAGACCAATGTCTCGG+TGG | 0.716299 | 7_3:-24284318 | Msa1097990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTCTTGTAAATTAAAT+TGG | - | chr7_3:24283923-24283942 | Msa1097990:intron | 10.0% |
| !! | AAATTCTTGTAAATTAAATT+GGG | - | chr7_3:24283924-24283943 | Msa1097990:intron | 10.0% |
| !!! | TTTAACTGTTTTATTTTTTA+AGG | - | chr7_3:24286107-24286126 | Msa1097990:CDS | 10.0% |
| !!! | TTAACTGTTTTATTTTTTAA+GGG | - | chr7_3:24286108-24286127 | Msa1097990:CDS | 10.0% |
| !! | TTAATAGTTAATAATTAAAG+AGG | + | chr7_3:24286530-24286549 | None:intergenic | 10.0% |
| !! | TATAGATACTAAAAAATTAA+AGG | + | chr7_3:24286569-24286588 | None:intergenic | 10.0% |
| !! | CAACAAAAAAAAAAAAAAAT+TGG | + | chr7_3:24288399-24288418 | None:intergenic | 10.0% |
| !! | TAGTAATTTAAGTGTATATT+TGG | + | chr7_3:24283698-24283717 | None:intergenic | 15.0% |
| !! | AAAACAATGTTGTTAAATAA+CGG | - | chr7_3:24284537-24284556 | Msa1097990:intron | 15.0% |
| !! | ATAAAACAGTTAAAACTATT+GGG | + | chr7_3:24286101-24286120 | None:intergenic | 15.0% |
| !! | AATAAAACAGTTAAAACTAT+TGG | + | chr7_3:24286102-24286121 | None:intergenic | 15.0% |
| !!! | TTTATTTTTTAAGGGTATAT+AGG | - | chr7_3:24286116-24286135 | Msa1097990:CDS | 15.0% |
| !!! | CATATAATTTTCAAAATAAG+TGG | - | chr7_3:24287054-24287073 | Msa1097990:intron | 15.0% |
| !!! | AAATGTATATTTTATGATTC+TGG | - | chr7_3:24288657-24288676 | Msa1097990:CDS | 15.0% |
| !!! | AGAAAATTTTGTTGAAGAAA+AGG | - | chr7_3:24282798-24282817 | Msa1097990:three_prime_UTR | 20.0% |
| !! | AACAACAACAATAATAACAA+TGG | - | chr7_3:24282917-24282936 | Msa1097990:three_prime_UTR | 20.0% |
| !!! | TCATTTTCTTAGTATATGTT+TGG | - | chr7_3:24283411-24283430 | Msa1097990:intron | 20.0% |
| !! | AAGGTAAAGTTATTTATGTT+CGG | - | chr7_3:24283504-24283523 | Msa1097990:intron | 20.0% |
| !!! | TAAACTTCTAGAATCAATTT+TGG | - | chr7_3:24283655-24283674 | Msa1097990:intron | 20.0% |
| !! | TATAATCTTACATATGTGTA+TGG | + | chr7_3:24284334-24284353 | None:intergenic | 20.0% |
| !! | TACACATATGTAAGATTATA+TGG | - | chr7_3:24284334-24284353 | Msa1097990:CDS | 20.0% |
| !! | CTTAAATTAACCTTTATTCT+TGG | + | chr7_3:24286434-24286453 | None:intergenic | 20.0% |
| !!! | ATGGGTCATATAATTTTTTT+TGG | + | chr7_3:24286871-24286890 | None:intergenic | 20.0% |
| !! | TCATGTTTAAACAGAATATT+AGG | - | chr7_3:24287174-24287193 | Msa1097990:intron | 20.0% |
| !!! | TTCTTTTATGTTTATTTGAG+AGG | - | chr7_3:24287370-24287389 | Msa1097990:intron | 20.0% |
| !! | ACTTATATGATTATATCATG+TGG | + | chr7_3:24287572-24287591 | None:intergenic | 20.0% |
| !! | AATCATATAAGTACTTATGT+AGG | - | chr7_3:24287580-24287599 | Msa1097990:intron | 20.0% |
| !! | TTCAATAAGCTATTTGTATT+TGG | + | chr7_3:24287816-24287835 | None:intergenic | 20.0% |
| !!! | TTGGTATAAGATGATTTTTA+AGG | + | chr7_3:24288380-24288399 | None:intergenic | 20.0% |
| ! | TTTGTTGAAGAAAAGGAAAA+TGG | - | chr7_3:24282805-24282824 | Msa1097990:three_prime_UTR | 25.0% |
| ! | ATTCACAATTCCTTGATTAA+TGG | - | chr7_3:24282987-24283006 | Msa1097990:three_prime_UTR | 25.0% |
| ! | TTCACAATTCCTTGATTAAT+GGG | - | chr7_3:24282988-24283007 | Msa1097990:three_prime_UTR | 25.0% |
| ! | ATTGCAGAACACAATTAAAA+TGG | + | chr7_3:24283037-24283056 | None:intergenic | 25.0% |
| ! | GAAGAAGTAAAATTAATGAG+AGG | - | chr7_3:24283177-24283196 | Msa1097990:intron | 25.0% |
| !! | TGATTGTGTAAAATTGATTC+TGG | - | chr7_3:24283467-24283486 | Msa1097990:intron | 25.0% |
| !! | TCAAGTAGAATCAATTTTTG+AGG | - | chr7_3:24283585-24283604 | Msa1097990:intron | 25.0% |
| !! | ATAATTGATTCTGACATGTT+TGG | + | chr7_3:24283636-24283655 | None:intergenic | 25.0% |
| !! | TATTTGGTTTCACATAAAGA+GGG | + | chr7_3:24283682-24283701 | None:intergenic | 25.0% |
| !! | ATATTTGGTTTCACATAAAG+AGG | + | chr7_3:24283683-24283702 | None:intergenic | 25.0% |
| !!! | ATATTTTTGTGACAGATTTC+AGG | - | chr7_3:24283791-24283810 | Msa1097990:intron | 25.0% |
| !! | TCTCTTTTTGAATCATTTTC+AGG | + | chr7_3:24283834-24283853 | None:intergenic | 25.0% |
| !! | AGATAAAGCTTCCTTTTTAT+TGG | - | chr7_3:24283851-24283870 | Msa1097990:intron | 25.0% |
| ! | TGAGTATATTCATTTCTTAC+AGG | - | chr7_3:24283994-24284013 | Msa1097990:intron | 25.0% |
| ! | ATTTATGAACATCCTTATGA+AGG | - | chr7_3:24284028-24284047 | Msa1097990:intron | 25.0% |
| ! | TTTCCCATATATTCATAGAA+CGG | + | chr7_3:24284486-24284505 | None:intergenic | 25.0% |
| !!! | TAACAACATTGTTTTAGATG+AGG | + | chr7_3:24284532-24284551 | None:intergenic | 25.0% |
| !! | ACAAGATCAAATTTTAGATC+AGG | + | chr7_3:24284726-24284745 | None:intergenic | 25.0% |
| ! | ACATACACAATCAAGTATAT+TGG | + | chr7_3:24284929-24284948 | None:intergenic | 25.0% |
| ! | CATTCAAGAATTTAATTCTG+TGG | - | chr7_3:24284982-24285001 | Msa1097990:intron | 25.0% |
| !! | CTTAAGATTTTACCATCTTA+TGG | - | chr7_3:24285007-24285026 | Msa1097990:intron | 25.0% |
| !!! | TTTTTTCAGAGAAATCATCA+CGG | - | chr7_3:24285124-24285143 | Msa1097990:intron | 25.0% |
| !! | AGAATGATCTGTAGTATTTT+CGG | + | chr7_3:24285155-24285174 | None:intergenic | 25.0% |
| ! | TAATACATTGAGAGAAAAAG+AGG | - | chr7_3:24285483-24285502 | Msa1097990:intron | 25.0% |
| ! | AAGTTATTCGATCATAATGT+TGG | - | chr7_3:24285750-24285769 | Msa1097990:intron | 25.0% |
| ! | ATCTGCAATTAGGATTTAAT+GGG | - | chr7_3:24286059-24286078 | Msa1097990:CDS | 25.0% |
| ! | AAATTAACCTTTATTCTTGG+AGG | + | chr7_3:24286431-24286450 | None:intergenic | 25.0% |
| ! | TATTACTTAAAGCTGATAGA+AGG | - | chr7_3:24286724-24286743 | Msa1097990:intron | 25.0% |
| ! | TATTGACAAGAAAATGTTCA+AGG | - | chr7_3:24286964-24286983 | Msa1097990:intron | 25.0% |
| ! | ATTGACAAGAAAATGTTCAA+GGG | - | chr7_3:24286965-24286984 | Msa1097990:intron | 25.0% |
| ! | AAGAATGAATAAACTTTGCA+GGG | + | chr7_3:24287355-24287374 | None:intergenic | 25.0% |
| ! | AAAGAATGAATAAACTTTGC+AGG | + | chr7_3:24287356-24287375 | None:intergenic | 25.0% |
| ! | CAAATATAAGGCTTATACAT+TGG | + | chr7_3:24287479-24287498 | None:intergenic | 25.0% |
| !! | CAATGTATAAGCCTTATATT+TGG | - | chr7_3:24287477-24287496 | Msa1097990:intron | 25.0% |
| !! | TAAGTACTTATGTAGGTTTT+TGG | - | chr7_3:24287587-24287606 | Msa1097990:intron | 25.0% |
| ! | AACTTATTCAAGATAGCATA+TGG | - | chr7_3:24287674-24287693 | Msa1097990:intron | 25.0% |
| !! | AAAATAAAATTTGAGGCAGA+TGG | + | chr7_3:24287745-24287764 | None:intergenic | 25.0% |
| !! | TACAATAAGCTATCTGTTTT+TGG | + | chr7_3:24287915-24287934 | None:intergenic | 25.0% |
| !! | AGATAATGGTGACATATTTA+GGG | + | chr7_3:24288005-24288024 | None:intergenic | 25.0% |
| ! | TTGATCAGTTATATTGTTGT+TGG | - | chr7_3:24288106-24288125 | Msa1097990:intron | 25.0% |
| !!! | GACATTTTAGAATAAACGTT+TGG | - | chr7_3:24288692-24288711 | Msa1097990:CDS | 25.0% |
| !!! | GAGCTTATTTATAACTTGTT+TGG | - | chr7_3:24288717-24288736 | Msa1097990:CDS | 25.0% |
| ! | ATTATTGTTGTTGTTGAGAG+AGG | + | chr7_3:24282912-24282931 | None:intergenic | 30.0% |
| AGGAATTGTGAATCATTGTT+GGG | + | chr7_3:24282980-24282999 | None:intergenic | 30.0% | |
| AAGGAATTGTGAATCATTGT+TGG | + | chr7_3:24282981-24283000 | None:intergenic | 30.0% | |
| ! | TTTGAAACACCCATTAATCA+AGG | + | chr7_3:24283000-24283019 | None:intergenic | 30.0% |
| !! | GGTTTTGTGTTGACAAAAAT+TGG | - | chr7_3:24283432-24283451 | Msa1097990:intron | 30.0% |
| TTCTACTTGAAGCTAGAAAT+TGG | + | chr7_3:24283575-24283594 | None:intergenic | 30.0% | |
| ! | ATTTGGTTTCACATAAAGAG+GGG | + | chr7_3:24283681-24283700 | None:intergenic | 30.0% |
| ! | TAAAGCTTCCTTTTTATTGG+AGG | - | chr7_3:24283854-24283873 | Msa1097990:intron | 30.0% |
| ATCAAGTACCTCCAATAAAA+AGG | + | chr7_3:24283865-24283884 | None:intergenic | 30.0% | |
| TGAATACATGAAGCAAATGA+TGG | + | chr7_3:24283889-24283908 | None:intergenic | 30.0% | |
| TGCACATAAGACAAAAACAA+AGG | + | chr7_3:24283968-24283987 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTTGTCTTATGTGC+AGG | - | chr7_3:24283967-24283986 | Msa1097990:intron | 30.0% |
| AGCCAACTAAATTAATTCCA+TGG | - | chr7_3:24284062-24284081 | Msa1097990:intron | 30.0% | |
| GCCAACTAAATTAATTCCAT+GGG | - | chr7_3:24284063-24284082 | Msa1097990:intron | 30.0% | |
| ACCCATGGAATTAATTTAGT+TGG | + | chr7_3:24284067-24284086 | None:intergenic | 30.0% | |
| ATTCCATGGGTAAAGTTATT+TGG | - | chr7_3:24284076-24284095 | Msa1097990:intron | 30.0% | |
| ATTCCAAATAACTTTACCCA+TGG | + | chr7_3:24284082-24284101 | None:intergenic | 30.0% | |
| CACACACATAATATCATTCA+TGG | + | chr7_3:24284205-24284224 | None:intergenic | 30.0% | |
| ! | ACCGTTGATTGATTAGTATA+TGG | - | chr7_3:24284258-24284277 | Msa1097990:intron | 30.0% |
| CCCATATACTAATCAATCAA+CGG | + | chr7_3:24284262-24284281 | None:intergenic | 30.0% | |
| ! | CCGTTGATTGATTAGTATAT+GGG | - | chr7_3:24284259-24284278 | Msa1097990:CDS | 30.0% |
| AACGAGTAATTCACTTTACA+GGG | + | chr7_3:24284303-24284322 | None:intergenic | 30.0% | |
| AAACGAGTAATTCACTTTAC+AGG | + | chr7_3:24284304-24284323 | None:intergenic | 30.0% | |
| AAGTTCTTCACTTACGTAAA+AGG | + | chr7_3:24284360-24284379 | None:intergenic | 30.0% | |
| ACGGTACAAATATATAACCA+GGG | + | chr7_3:24284467-24284486 | None:intergenic | 30.0% | |
| AACGGTACAAATATATAACC+AGG | + | chr7_3:24284468-24284487 | None:intergenic | 30.0% | |
| TGTACCGTTCTATGAATATA+TGG | - | chr7_3:24284479-24284498 | Msa1097990:intron | 30.0% | |
| GTACCGTTCTATGAATATAT+GGG | - | chr7_3:24284480-24284499 | Msa1097990:intron | 30.0% | |
| TGAATATATGGGAAACTGTT+CGG | - | chr7_3:24284491-24284510 | Msa1097990:intron | 30.0% | |
| TTGTTAAATAACGGCTATAG+TGG | - | chr7_3:24284546-24284565 | Msa1097990:intron | 30.0% | |
| TTTGCATTCAAATCAGGAAT+AGG | + | chr7_3:24284840-24284859 | None:intergenic | 30.0% | |
| ! | GTTTCTTTTGCATTCAAATC+AGG | + | chr7_3:24284846-24284865 | None:intergenic | 30.0% |
| ! | TTTTACCATCTTATGGCATT+TGG | - | chr7_3:24285014-24285033 | Msa1097990:intron | 30.0% |
| ATTCTCGAGCTATTCAAAAT+GGG | - | chr7_3:24285170-24285189 | Msa1097990:intron | 30.0% | |
| !! | TGTACATTTTTAGGCAATGA+TGG | + | chr7_3:24285223-24285242 | None:intergenic | 30.0% |
| ! | ATTGGGTTCTGTACATTTTT+AGG | + | chr7_3:24285232-24285251 | None:intergenic | 30.0% |
| ACAATATGATTGTCCTTGTT+TGG | + | chr7_3:24285457-24285476 | None:intergenic | 30.0% | |
| GAGGATTTGAAAATTGATAG+TGG | - | chr7_3:24285502-24285521 | Msa1097990:intron | 30.0% | |
| CACATAGTTAACATGAAATC+AGG | + | chr7_3:24285604-24285623 | None:intergenic | 30.0% | |
| ATTCGATCATAATGTTGGAT+TGG | - | chr7_3:24285755-24285774 | Msa1097990:intron | 30.0% | |
| CATCTGCAATTAGGATTTAA+TGG | - | chr7_3:24286058-24286077 | Msa1097990:CDS | 30.0% | |
| TAAAACTATTGGGTATTCGA+GGG | + | chr7_3:24286091-24286110 | None:intergenic | 30.0% | |
| TTAAAACTATTGGGTATTCG+AGG | + | chr7_3:24286092-24286111 | None:intergenic | 30.0% | |
| AAAAAACAGAGAAGGAATAG+TGG | + | chr7_3:24286340-24286359 | None:intergenic | 30.0% | |
| !!! | ACTATTCCTTCTCTGTTTTT+TGG | - | chr7_3:24286339-24286358 | Msa1097990:CDS | 30.0% |
| ATGTTGTTAATCTCAAACAG+TGG | + | chr7_3:24286675-24286694 | None:intergenic | 30.0% | |
| CAAATCATATGAATGTGGAA+TGG | + | chr7_3:24286780-24286799 | None:intergenic | 30.0% | |
| ATCGACAAATCATATGAATG+TGG | + | chr7_3:24286785-24286804 | None:intergenic | 30.0% | |
| ! | CTCTAATAATTTTGTCGGAT+GGG | + | chr7_3:24286889-24286908 | None:intergenic | 30.0% |
| !! | TACTCATATTGATTCATGTG+TGG | + | chr7_3:24287113-24287132 | None:intergenic | 30.0% |
| TGTCAATATATGATGTTGAC+TGG | - | chr7_3:24287149-24287168 | Msa1097990:intron | 30.0% | |
| !!! | CGTCATTTTTCTTCATTCTA+TGG | - | chr7_3:24287329-24287348 | Msa1097990:intron | 30.0% |
| GTTACCAGAATGCATTAAAA+AGG | - | chr7_3:24287434-24287453 | Msa1097990:intron | 30.0% | |
| ! | ACATCCTTTTTAATGCATTC+TGG | + | chr7_3:24287441-24287460 | None:intergenic | 30.0% |
| GAATGCATTAAAAAGGATGT+AGG | - | chr7_3:24287441-24287460 | Msa1097990:intron | 30.0% | |
| ! | GATAATGGTGACATATTTAG+GGG | + | chr7_3:24288004-24288023 | None:intergenic | 30.0% |
| ! | CAGATAATGGTGACATATTT+AGG | + | chr7_3:24288006-24288025 | None:intergenic | 30.0% |
| ACATTGAGTAGAACAGATAA+TGG | + | chr7_3:24288019-24288038 | None:intergenic | 30.0% | |
| !! | TTTTAAAAACTGAGCTGAAC+CGG | - | chr7_3:24288038-24288057 | Msa1097990:intron | 30.0% |
| TCAACCAATTTAACTGGAAA+CGG | - | chr7_3:24288066-24288085 | Msa1097990:intron | 30.0% | |
| ! | ATATTGTTGTTGGATTGAAC+CGG | - | chr7_3:24288116-24288135 | Msa1097990:intron | 30.0% |
| AGGAGAAAAGAAACAATACA+AGG | + | chr7_3:24288360-24288379 | None:intergenic | 30.0% | |
| AACAGAACAAAATGAACATG+AGG | + | chr7_3:24288546-24288565 | None:intergenic | 30.0% | |
| !!! | TCAGGTTATTTTTTTCATGC+TGG | - | chr7_3:24288620-24288639 | Msa1097990:intron | 30.0% |
| !!! | CAGGTTATTTTTTTCATGCT+GGG | - | chr7_3:24288621-24288640 | Msa1097990:intron | 30.0% |
| !!! | ATGATTCTGGTTTTGAAACA+AGG | - | chr7_3:24288670-24288689 | Msa1097990:CDS | 30.0% |
| ! | ACCTAACTTGTGTAAGTATT+TGG | - | chr7_3:24288749-24288768 | Msa1097990:exon | 30.0% |
| ! | CCTAACTTGTGTAAGTATTT+GGG | - | chr7_3:24288750-24288769 | Msa1097990:exon | 30.0% |
| TGAAGAAAAGGAAAATGGCT+AGG | - | chr7_3:24282810-24282829 | Msa1097990:three_prime_UTR | 35.0% | |
| CAACCAATTCTTCATCTTGA+TGG | + | chr7_3:24282847-24282866 | None:intergenic | 35.0% | |
| ! | GCAATTTTTGTGTTGTGACT+TGG | - | chr7_3:24283076-24283095 | Msa1097990:CDS | 35.0% |
| ! | TCTGGTTAAAAGTGAGTTGA+AGG | - | chr7_3:24283485-24283504 | Msa1097990:intron | 35.0% |
| ATGAACATCCTTATGAAGGA+TGG | - | chr7_3:24284032-24284051 | Msa1097990:intron | 35.0% | |
| ATACTTCTATGGTCATGCAT+TGG | + | chr7_3:24284135-24284154 | None:intergenic | 35.0% | |
| ! | ACCATAGAAGTATGCATTTG+TGG | - | chr7_3:24284142-24284161 | Msa1097990:intron | 35.0% |
| ! | CCATAGAAGTATGCATTTGT+GGG | - | chr7_3:24284143-24284162 | Msa1097990:intron | 35.0% |
| AGCCTTGATCCTAAAATTCA+GGG | - | chr7_3:24284425-24284444 | Msa1097990:intron | 35.0% | |
| !!! | ATCCCTGAATTTTAGGATCA+AGG | + | chr7_3:24284430-24284449 | None:intergenic | 35.0% |
| CGGTACAAATATATAACCAG+GGG | + | chr7_3:24284466-24284485 | None:intergenic | 35.0% | |
| ! | TTTTAGATCAGGTTTGTCGA+TGG | + | chr7_3:24284715-24284734 | None:intergenic | 35.0% |
| TAGGAATAAGAGTTAGAGGT+TGG | + | chr7_3:24284873-24284892 | None:intergenic | 35.0% | |
| TTGGTAGGAATAAGAGTTAG+AGG | + | chr7_3:24284877-24284896 | None:intergenic | 35.0% | |
| TTAGTTGCAATGTAAAGCCT+TGG | - | chr7_3:24285053-24285072 | Msa1097990:intron | 35.0% | |
| ! | TGATCTGTAGTATTTTCGGA+AGG | + | chr7_3:24285151-24285170 | None:intergenic | 35.0% |
| CATTCTCGAGCTATTCAAAA+TGG | - | chr7_3:24285169-24285188 | Msa1097990:intron | 35.0% | |
| ATTCAAAATGGGTCTGTTGA+TGG | - | chr7_3:24285181-24285200 | Msa1097990:intron | 35.0% | |
| ! | AAAAACTGACCTTTGAGAGT+AGG | + | chr7_3:24285554-24285573 | None:intergenic | 35.0% |
| GCTATAGCATTGTAACATTG+TGG | - | chr7_3:24285848-24285867 | Msa1097990:intron | 35.0% | |
| GACGCAATAATGATGTGATA+AGG | + | chr7_3:24286023-24286042 | None:intergenic | 35.0% | |
| AAACTCAAAGATCAGAGCAA+AGG | + | chr7_3:24286368-24286387 | None:intergenic | 35.0% | |
| TAACCTTTATTCTTGGAGGT+TGG | + | chr7_3:24286427-24286446 | None:intergenic | 35.0% | |
| AAAGGTTAATTTAAGCCGAC+TGG | - | chr7_3:24286439-24286458 | Msa1097990:intron | 35.0% | |
| TTGGGAATGGAATTCTTTGA+AGG | - | chr7_3:24286480-24286499 | Msa1097990:intron | 35.0% | |
| AACAACAGTGTACAAACACA+GGG | + | chr7_3:24286596-24286615 | None:intergenic | 35.0% | |
| AAACAACAGTGTACAAACAC+AGG | + | chr7_3:24286597-24286616 | None:intergenic | 35.0% | |
| ! | TTGTTTAGTCTTCGCAATAG+CGG | - | chr7_3:24286611-24286630 | Msa1097990:intron | 35.0% |
| ! | GCTCTAATAATTTTGTCGGA+TGG | + | chr7_3:24286890-24286909 | None:intergenic | 35.0% |
| ! | TGGCGCTCTAATAATTTTGT+CGG | + | chr7_3:24286894-24286913 | None:intergenic | 35.0% |
| ! | AAAATTATTAGAGCGCCACT+TGG | - | chr7_3:24286896-24286915 | Msa1097990:intron | 35.0% |
| TTACAATCGTGCACAAGATT+CGG | - | chr7_3:24286920-24286939 | Msa1097990:intron | 35.0% | |
| TCAACTGCAATAAGACATTC+TGG | + | chr7_3:24286997-24287016 | None:intergenic | 35.0% | |
| GTGTGGAAGAATTAATATCC+TGG | + | chr7_3:24287096-24287115 | None:intergenic | 35.0% | |
| ACCTTTGAGCTATATTGACA+GGG | + | chr7_3:24287300-24287319 | None:intergenic | 35.0% | |
| AACCTTTGAGCTATATTGAC+AGG | + | chr7_3:24287301-24287320 | None:intergenic | 35.0% | |
| ! | ACTGACTCTGTCCAAATATA+AGG | + | chr7_3:24287491-24287510 | None:intergenic | 35.0% |
| TATTTGGACAGAGTCAGTTT+AGG | - | chr7_3:24287493-24287512 | Msa1097990:CDS | 35.0% | |
| TCCAGTTAAATTGGTTGAAC+CGG | + | chr7_3:24288064-24288083 | None:intergenic | 35.0% | |
| CAACCAATTTAACTGGAAAC+GGG | - | chr7_3:24288067-24288086 | Msa1097990:intron | 35.0% | |
| TGATCAAAGCAACTGTGAAA+TGG | + | chr7_3:24288093-24288112 | None:intergenic | 35.0% | |
| ! | TATTGTTGTTGGATTGAACC+GGG | - | chr7_3:24288117-24288136 | Msa1097990:intron | 35.0% |
| CAAGTCTGTATCCTTAGAAA+CGG | + | chr7_3:24288331-24288350 | None:intergenic | 35.0% | |
| ATTTGTCAGCAATCAAGCAA+TGG | - | chr7_3:24288436-24288455 | Msa1097990:CDS | 35.0% | |
| AGGAATGAATTACTTCAGTG+AGG | - | chr7_3:24288466-24288485 | Msa1097990:intron | 35.0% | |
| ATTCTGAACAAAGTCCAAAG+AGG | - | chr7_3:24288489-24288508 | Msa1097990:intron | 35.0% | |
| CCCAAATACTTACACAAGTT+AGG | + | chr7_3:24288753-24288772 | None:intergenic | 35.0% | |
| AAAATGGCTAGGTCTGCTAA+AGG | - | chr7_3:24282821-24282840 | Msa1097990:three_prime_UTR | 40.0% | |
| AGGCCATCAAGATGAAGAAT+TGG | - | chr7_3:24282841-24282860 | Msa1097990:three_prime_UTR | 40.0% | |
| TTGAGAGAGGAAGATGTGTT+TGG | + | chr7_3:24282899-24282918 | None:intergenic | 40.0% | |
| CTGAATGCTTAGAACGATGA+GGG | + | chr7_3:24283142-24283161 | None:intergenic | 40.0% | |
| TCTGAATGCTTAGAACGATG+AGG | + | chr7_3:24283143-24283162 | None:intergenic | 40.0% | |
| CGACATGTTAGTGTTGTGTT+CGG | - | chr7_3:24283725-24283744 | Msa1097990:intron | 40.0% | |
| TGTGCTTCATAGGTGATGAT+TGG | - | chr7_3:24283752-24283771 | Msa1097990:intron | 40.0% | |
| TCCTTATGAAGGATGGAATC+AGG | - | chr7_3:24284039-24284058 | Msa1097990:intron | 40.0% | |
| TCCTGATTCCATCCTTCATA+AGG | + | chr7_3:24284043-24284062 | None:intergenic | 40.0% | |
| CCCACAAATGCATACTTCTA+TGG | + | chr7_3:24284146-24284165 | None:intergenic | 40.0% | |
| !! | TGAGCTGGATTCTAGCTTAT+AGG | + | chr7_3:24284400-24284419 | None:intergenic | 40.0% |
| GAGCCTTGATCCTAAAATTC+AGG | - | chr7_3:24284424-24284443 | Msa1097990:intron | 40.0% | |
| ! | TGTCGAGATCCCTGAATTTT+AGG | + | chr7_3:24284437-24284456 | None:intergenic | 40.0% |
| GCACTATTGTAACTGCTAAC+TGG | + | chr7_3:24284639-24284658 | None:intergenic | 40.0% | |
| GCTATAGCATTGTAGCGTAT+TGG | - | chr7_3:24284657-24284676 | Msa1097990:intron | 40.0% | |
| AACTCTTATTCCTACCAAGC+AGG | - | chr7_3:24284879-24284898 | Msa1097990:intron | 40.0% | |
| ACTCTTATTCCTACCAAGCA+GGG | - | chr7_3:24284880-24284899 | Msa1097990:intron | 40.0% | |
| ACTTGCCAAATGCCATAAGA+TGG | + | chr7_3:24285022-24285041 | None:intergenic | 40.0% | |
| AAGCCTTGGAATAATAGCAC+TGG | - | chr7_3:24285067-24285086 | Msa1097990:intron | 40.0% | |
| CTTTCTGAATAGTTGTGGAG+GGG | + | chr7_3:24285264-24285283 | None:intergenic | 40.0% | |
| CCTTTCTGAATAGTTGTGGA+GGG | + | chr7_3:24285265-24285284 | None:intergenic | 40.0% | |
| ACCTTTCTGAATAGTTGTGG+AGG | + | chr7_3:24285266-24285285 | None:intergenic | 40.0% | |
| GCAACCTTTCTGAATAGTTG+TGG | + | chr7_3:24285269-24285288 | None:intergenic | 40.0% | |
| ATGTTTGATCCGGTTGTTAG+CGG | - | chr7_3:24285343-24285362 | Msa1097990:intron | 40.0% | |
| ATGGCTTAGCAAACCAAACA+AGG | - | chr7_3:24285441-24285460 | Msa1097990:intron | 40.0% | |
| CAGAAGAATGAGAATGGGTA+TGG | + | chr7_3:24286248-24286267 | None:intergenic | 40.0% | |
| GCATGCAGAAGAATGAGAAT+GGG | + | chr7_3:24286253-24286272 | None:intergenic | 40.0% | |
| TGCATGCAGAAGAATGAGAA+TGG | + | chr7_3:24286254-24286273 | None:intergenic | 40.0% | |
| TGGAGAAACAGGAGAAACAT+AGG | + | chr7_3:24286320-24286339 | None:intergenic | 40.0% | |
| ! | AGAAGGAATAGTGGAGAAAC+AGG | + | chr7_3:24286331-24286350 | None:intergenic | 40.0% |
| AGGAAGCCAAAAAACAGAGA+AGG | + | chr7_3:24286348-24286367 | None:intergenic | 40.0% | |
| ! | TGAGTTTTCTGCGAGAACAA+TGG | - | chr7_3:24286381-24286400 | Msa1097990:CDS | 40.0% |
| ACACCAACCTCCAAGAATAA+AGG | - | chr7_3:24286421-24286440 | Msa1097990:CDS | 40.0% | |
| GCTATCCGCTATATCAGTTT+CGG | - | chr7_3:24286633-24286652 | Msa1097990:intron | 40.0% | |
| CTATCCGCTATATCAGTTTC+GGG | - | chr7_3:24286634-24286653 | Msa1097990:intron | 40.0% | |
| TATCCGCTATATCAGTTTCG+GGG | - | chr7_3:24286635-24286654 | Msa1097990:intron | 40.0% | |
| AAACCCCGAAACTGATATAG+CGG | + | chr7_3:24286641-24286660 | None:intergenic | 40.0% | |
| CAAGACTCAAGCGAGTAAAA+TGG | + | chr7_3:24286810-24286829 | None:intergenic | 40.0% | |
| ! | GGTGCAACAATACATTTTCC+AGG | - | chr7_3:24287075-24287094 | Msa1097990:intron | 40.0% |
| ATCAATTTCCACCGAGACAT+TGG | + | chr7_3:24287247-24287266 | None:intergenic | 40.0% | |
| ! | GTTGGTAGACGAACAAATAC+TGG | - | chr7_3:24287267-24287286 | Msa1097990:intron | 40.0% |
| CTTTGAGCTATATTGACAGG+GGG | + | chr7_3:24287298-24287317 | None:intergenic | 40.0% | |
| CCTTTGAGCTATATTGACAG+GGG | + | chr7_3:24287299-24287318 | None:intergenic | 40.0% | |
| ! | AGAGTCAGTTTAGGACTAGT+AGG | - | chr7_3:24287502-24287521 | Msa1097990:CDS | 40.0% |
| ! | AGTTTAGGACTAGTAGGTGA+TGG | - | chr7_3:24287508-24287527 | Msa1097990:CDS | 40.0% |
| !! | GTGACATATTTAGGGGTGTT+TGG | + | chr7_3:24287997-24288016 | None:intergenic | 40.0% |
| ! | ATTGTTGTTGGATTGAACCG+GGG | - | chr7_3:24288118-24288137 | Msa1097990:intron | 40.0% |
| TTGAAACCACAGTTCAACTG+CGG | - | chr7_3:24288150-24288169 | Msa1097990:intron | 40.0% | |
| ! | TTTGTCATCTAGTTCAACCG+TGG | - | chr7_3:24288246-24288265 | Msa1097990:intron | 40.0% |
| ! | CGGTTCAATTGGTTTAACCA+CGG | + | chr7_3:24288266-24288285 | None:intergenic | 40.0% |
| CGTGGTTAAACCAATTGAAC+CGG | - | chr7_3:24288264-24288283 | Msa1097990:intron | 40.0% | |
| !! | AAACGGACTAAAGATCGAAC+CGG | + | chr7_3:24288314-24288333 | None:intergenic | 40.0% |
| CGATCTTTAGTCCGTTTCTA+AGG | - | chr7_3:24288317-24288336 | Msa1097990:intron | 40.0% | |
| ! | CGTTTCTAAGGATACAGACT+TGG | - | chr7_3:24288329-24288348 | Msa1097990:intron | 40.0% |
| AATCAAGCAATGGCATGTTC+AGG | - | chr7_3:24288446-24288465 | Msa1097990:CDS | 40.0% | |
| ATGTTGAGCCAAGTGAAAGT+GGG | - | chr7_3:24288585-24288604 | Msa1097990:intron | 40.0% | |
| ATGAACCCATCAGAGGGAAA+AGG | - | chr7_3:24283111-24283130 | Msa1097990:CDS | 45.0% | |
| TGAACCCATCAGAGGGAAAA+GGG | - | chr7_3:24283112-24283131 | Msa1097990:CDS | 45.0% | |
| ! | TTAGCCCTTTTCCCTCTGAT+GGG | + | chr7_3:24283119-24283138 | None:intergenic | 45.0% |
| !! | TCTTTGTAGCACCGACACTT+TGG | - | chr7_3:24283325-24283344 | Msa1097990:intron | 45.0% |
| !! | GTTCGGTGTTTGTGCTTCAT+AGG | - | chr7_3:24283742-24283761 | Msa1097990:intron | 45.0% |
| ACAATATATGCAGCCCTGCT+TGG | + | chr7_3:24284896-24284915 | None:intergenic | 45.0% | |
| ! | GAGCCAGTGCTATTATTCCA+AGG | + | chr7_3:24285073-24285092 | None:intergenic | 45.0% |
| TGGAGGGGTCAGACATTATT+GGG | + | chr7_3:24285249-24285268 | None:intergenic | 45.0% | |
| CCCTCCACAACTATTCAGAA+AGG | - | chr7_3:24285262-24285281 | Msa1097990:intron | 45.0% | |
| ATTCAGAAAGGTTGCATCCC+TGG | - | chr7_3:24285274-24285293 | Msa1097990:intron | 45.0% | |
| CTACTTCTGTGGATGAACCA+GGG | + | chr7_3:24285294-24285313 | None:intergenic | 45.0% | |
| ACTACTTCTGTGGATGAACC+AGG | + | chr7_3:24285295-24285314 | None:intergenic | 45.0% | |
| AATCGCATTTGCATGGTCAG+GGG | + | chr7_3:24285319-24285338 | None:intergenic | 45.0% | |
| CAATCGCATTTGCATGGTCA+GGG | + | chr7_3:24285320-24285339 | None:intergenic | 45.0% | |
| CATGTCCAATCGCATTTGCA+TGG | + | chr7_3:24285326-24285345 | None:intergenic | 45.0% | |
| GCGATTGGACATGTTTGATC+CGG | - | chr7_3:24285333-24285352 | Msa1097990:intron | 45.0% | |
| TATGGTGACTCAACAGATGC+TGG | - | chr7_3:24285369-24285388 | Msa1097990:intron | 45.0% | |
| GCCTGTATCTAATCCTGACA+TGG | - | chr7_3:24285396-24285415 | Msa1097990:intron | 45.0% | |
| GCCATGTCAGGATTAGATAC+AGG | + | chr7_3:24285400-24285419 | None:intergenic | 45.0% | |
| !! | GGTTTGCTAAGCCATACTTG+AGG | + | chr7_3:24285436-24285455 | None:intergenic | 45.0% |
| TCTCAAGTGCCTACTCTCAA+AGG | - | chr7_3:24285542-24285561 | Msa1097990:intron | 45.0% | |
| CTATGAAGAGACACTCCTAC+TGG | + | chr7_3:24285800-24285819 | None:intergenic | 45.0% | |
| ACCGCAGTGTTGTCAAATAG+AGG | - | chr7_3:24285826-24285845 | Msa1097990:intron | 45.0% | |
| GCCTCTATTTGACAACACTG+CGG | + | chr7_3:24285830-24285849 | None:intergenic | 45.0% | |
| TATACCAATGCTGTCCATCG+CGG | + | chr7_3:24285901-24285920 | None:intergenic | 45.0% | |
| AATCCTAATTGCAGATGCGC+AGG | + | chr7_3:24286055-24286074 | None:intergenic | 45.0% | |
| AGAAGAGTTGCACGAAGCAT+GGG | + | chr7_3:24286211-24286230 | None:intergenic | 45.0% | |
| AAGAAGAGTTGCACGAAGCA+TGG | + | chr7_3:24286212-24286231 | None:intergenic | 45.0% | |
| TTCTGCATGCAAACTGCGAA+GGG | - | chr7_3:24286263-24286282 | Msa1097990:CDS | 45.0% | |
| ACTTCAAGGTTGTCACCAGT+CGG | + | chr7_3:24286457-24286476 | None:intergenic | 45.0% | |
| TGACAACCTTGAAGTGGCTT+GGG | - | chr7_3:24286462-24286481 | Msa1097990:intron | 45.0% | |
| GTGCACGATTGTAAACCAAG+TGG | + | chr7_3:24286914-24286933 | None:intergenic | 45.0% | |
| ACCTGAAGATTGTAGCGCTT+GGG | + | chr7_3:24287208-24287227 | None:intergenic | 45.0% | |
| TTTGTCCCAGACCAATGTCT+CGG | - | chr7_3:24287233-24287252 | Msa1097990:intron | 45.0% | |
| GTCTCGGTGGAAATTGATGT+TGG | - | chr7_3:24287249-24287268 | Msa1097990:intron | 45.0% | |
| CCCCTGTCAATATAGCTCAA+AGG | - | chr7_3:24287296-24287315 | Msa1097990:intron | 45.0% | |
| ! | TTAGGACTAGTAGGTGATGG+TGG | - | chr7_3:24287511-24287530 | Msa1097990:CDS | 45.0% |
| GTTAAATTGGTTGAACCGGC+CGG | + | chr7_3:24288060-24288079 | None:intergenic | 45.0% | |
| ! | GCCGGTTCAACCAATTTAAC+TGG | - | chr7_3:24288060-24288079 | Msa1097990:intron | 45.0% |
| TGGCCCGTTTCCAGTTAAAT+TGG | + | chr7_3:24288073-24288092 | None:intergenic | 45.0% | |
| ! | CGTAGTTCAACCGGTTCAAT+TGG | + | chr7_3:24288277-24288296 | None:intergenic | 45.0% |
| ! | CTTTCGAGTCGTAGTTCAAC+CGG | + | chr7_3:24288286-24288305 | None:intergenic | 45.0% |
| CTAAGGATACAGACTTGGCA+TGG | - | chr7_3:24288334-24288353 | Msa1097990:intron | 45.0% | |
| GCTTCTCTTCTGAACCTCTT+TGG | + | chr7_3:24288506-24288525 | None:intergenic | 45.0% | |
| GATGTTGAGCCAAGTGAAAG+TGG | - | chr7_3:24288584-24288603 | Msa1097990:intron | 45.0% | |
| CCAAGTGAAAGTGGGATTGA+GGG | - | chr7_3:24288593-24288612 | Msa1097990:intron | 45.0% | |
| ! | GTGTTGTGACTTGGCAGTGA+AGG | - | chr7_3:24283085-24283104 | Msa1097990:CDS | 50.0% |
| ! | TTGTGACTTGGCAGTGAAGG+TGG | - | chr7_3:24283088-24283107 | Msa1097990:CDS | 50.0% |
| AAGGTGGATGAACCCATCAG+AGG | - | chr7_3:24283104-24283123 | Msa1097990:CDS | 50.0% | |
| AGGTGGATGAACCCATCAGA+GGG | - | chr7_3:24283105-24283124 | Msa1097990:CDS | 50.0% | |
| ! | GTTAGCCCTTTTCCCTCTGA+TGG | + | chr7_3:24283120-24283139 | None:intergenic | 50.0% |
| CACAGACACATGTCAGACAC+CGG | + | chr7_3:24283356-24283375 | None:intergenic | 50.0% | |
| !! | GATCAAGGCTCAAGTTGAGC+TGG | + | chr7_3:24284415-24284434 | None:intergenic | 50.0% |
| GATCTCGACATTGTTTCCCC+TGG | - | chr7_3:24284447-24284466 | Msa1097990:intron | 50.0% | |
| TATATGCAGCCCTGCTTGGT+AGG | + | chr7_3:24284892-24284911 | None:intergenic | 50.0% | |
| GTGGAGGGGTCAGACATTAT+TGG | + | chr7_3:24285250-24285269 | None:intergenic | 50.0% | |
| CCAATCGCATTTGCATGGTC+AGG | + | chr7_3:24285321-24285340 | None:intergenic | 50.0% | |
| CCTGACCATGCAAATGCGAT+TGG | - | chr7_3:24285318-24285337 | Msa1097990:intron | 50.0% | |
| TTTGATCCGGTTGTTAGCGG+TGG | - | chr7_3:24285346-24285365 | Msa1097990:intron | 50.0% | |
| ACCATACCACCGCTAACAAC+CGG | + | chr7_3:24285355-24285374 | None:intergenic | 50.0% | |
| TGGAGACTTGAAGCCATGTC+AGG | + | chr7_3:24285412-24285431 | None:intergenic | 50.0% | |
| CAAGTCTCCAGCCTCAAGTA+TGG | - | chr7_3:24285422-24285441 | Msa1097990:intron | 50.0% | |
| TGCTAAGCCATACTTGAGGC+TGG | + | chr7_3:24285432-24285451 | None:intergenic | 50.0% | |
| AGCACTATAGCGCGCTATCA+CGG | - | chr7_3:24285945-24285964 | Msa1097990:intron | 50.0% | |
| AGCAATGTGGTCCGTTGTGT+CGG | - | chr7_3:24285979-24285998 | Msa1097990:intron | 50.0% | |
| AAGAGTTGCACGAAGCATGG+GGG | + | chr7_3:24286209-24286228 | None:intergenic | 50.0% | |
| GAAGAGTTGCACGAAGCATG+GGG | + | chr7_3:24286210-24286229 | None:intergenic | 50.0% | |
| CTTCTGCATGCAAACTGCGA+AGG | - | chr7_3:24286262-24286281 | Msa1097990:CDS | 50.0% | |
| GCCATTCTTCTTCCTGCGAA+CGG | - | chr7_3:24286288-24286307 | Msa1097990:CDS | 50.0% | |
| TCCGTTCGCAGGAAGAAGAA+TGG | + | chr7_3:24286292-24286311 | None:intergenic | 50.0% | |
| GACTGGTGACAACCTTGAAG+TGG | - | chr7_3:24286456-24286475 | Msa1097990:intron | 50.0% | |
| GTGACAACCTTGAAGTGGCT+TGG | - | chr7_3:24286461-24286480 | Msa1097990:intron | 50.0% | |
| ! | ACCTTGAAGTGGCTTGGGAA+TGG | - | chr7_3:24286467-24286486 | Msa1097990:intron | 50.0% |
| TCCATTCCCAAGCCACTTCA+AGG | + | chr7_3:24286471-24286490 | None:intergenic | 50.0% | |
| ACCCAAGCGCTACAATCTTC+AGG | - | chr7_3:24287204-24287223 | Msa1097990:intron | 50.0% | |
| CACCTGAAGATTGTAGCGCT+TGG | + | chr7_3:24287209-24287228 | None:intergenic | 50.0% | |
| ! | TTCCACCGAGACATTGGTCT+GGG | + | chr7_3:24287241-24287260 | None:intergenic | 50.0% |
| TTTCCACCGAGACATTGGTC+TGG | + | chr7_3:24287242-24287261 | None:intergenic | 50.0% | |
| GAGGCAGATGGAAAACAACG+AGG | + | chr7_3:24287733-24287752 | None:intergenic | 50.0% | |
| AAAAACTGAGCTGAACCGGC+CGG | - | chr7_3:24288042-24288061 | Msa1097990:intron | 50.0% | |
| GGATTGAACCGGGGTTAAAG+CGG | - | chr7_3:24288127-24288146 | Msa1097990:intron | 50.0% | |
| GGTTTCAACCGCTTTAACCC+CGG | + | chr7_3:24288138-24288157 | None:intergenic | 50.0% | |
| ! | TCAACTGCGGCTGGTTCAAT+CGG | - | chr7_3:24288163-24288182 | Msa1097990:intron | 50.0% |
| CTACGACTCGAAAGTCTCAC+CGG | - | chr7_3:24288292-24288311 | Msa1097990:intron | 50.0% | |
| GCCAAGTGAAAGTGGGATTG+AGG | - | chr7_3:24288592-24288611 | Msa1097990:intron | 50.0% | |
| CCCTCAATCCCACTTTCACT+TGG | + | chr7_3:24288596-24288615 | None:intergenic | 50.0% | |
| GTGAAAGTGGGATTGAGGGT+AGG | - | chr7_3:24288597-24288616 | Msa1097990:intron | 50.0% | |
| CACCGACACTTTGGCATGTC+CGG | - | chr7_3:24283334-24283353 | Msa1097990:intron | 55.0% | |
| CACCGGACATGCCAAAGTGT+CGG | + | chr7_3:24283339-24283358 | None:intergenic | 55.0% | |
| GGTCAGGGGAACTACTTCTG+TGG | + | chr7_3:24285305-24285324 | None:intergenic | 55.0% | |
| TCCGGTTGTTAGCGGTGGTA+TGG | - | chr7_3:24285351-24285370 | Msa1097990:intron | 55.0% | |
| ! | ACTCCTACTGGCTACTGCTG+CGG | + | chr7_3:24285788-24285807 | None:intergenic | 55.0% |
| ! | CTGTTTTCTGCGATCCGCGA+TGG | - | chr7_3:24285884-24285903 | Msa1097990:intron | 55.0% |
| GGACTCGAGTAGCAGCAATG+TGG | - | chr7_3:24285966-24285985 | Msa1097990:intron | 55.0% | |
| GCTCCTGCGCATCTGCAATT+AGG | - | chr7_3:24286049-24286068 | Msa1097990:CDS | 55.0% | |
| CATAGGCTTTCTCCGTTCGC+AGG | + | chr7_3:24286303-24286322 | None:intergenic | 55.0% | |
| ! | GGTTGGTGTTTCAGACGAGG+AGG | + | chr7_3:24286410-24286429 | None:intergenic | 55.0% |
| !! | GGAGGTTGGTGTTTCAGACG+AGG | + | chr7_3:24286413-24286432 | None:intergenic | 55.0% |
| AACCACAGTTCAACTGCGGC+TGG | - | chr7_3:24288154-24288173 | Msa1097990:intron | 55.0% | |
| AACCAGCCGCAGTTGAACTG+TGG | + | chr7_3:24288159-24288178 | None:intergenic | 55.0% | |
| AGTGGGATTGAGGGTAGGTC+AGG | - | chr7_3:24288602-24288621 | Msa1097990:intron | 55.0% | |
| CGATCCGCGATGGACAGCAT+TGG | - | chr7_3:24285894-24285913 | Msa1097990:intron | 60.0% | |
| TGCAGCCACGACCGACACAA+CGG | + | chr7_3:24285993-24286012 | None:intergenic | 60.0% | |
| TTGCAGATGCGCAGGAGCGA+CGG | + | chr7_3:24286047-24286066 | None:intergenic | 60.0% | |
| GTCCCAGACCAATGTCTCGG+TGG | - | chr7_3:24287236-24287255 | Msa1097990:intron | 60.0% | |
| CAGCCGCAGCAGTAGCCAGT+AGG | - | chr7_3:24285782-24285801 | Msa1097990:intron | 65.0% | |
| ! | GTGGTCCGTTGTGTCGGTCG+TGG | - | chr7_3:24285985-24286004 | Msa1097990:intron | 65.0% |
| TGCAGATGCGCAGGAGCGAC+GGG | + | chr7_3:24286046-24286065 | None:intergenic | 65.0% | |
| GCAGATGCGCAGGAGCGACG+GGG | + | chr7_3:24286045-24286064 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 24282768 | 24288808 | 24282768 | ID=Msa1097990;Name=Msa1097990 |
| chr7_3 | mRNA | 24282768 | 24288808 | 24282768 | ID=Msa1097990-mRNA-1;Parent=Msa1097990;Name=Msa1097990-mRNA-1;_AED=0.12;_eAED=0.12;_QI=56|0.83|0.85|1|1|1|7|276|344 |
| chr7_3 | exon | 24282768 | 24283154 | 24282768 | ID=Msa1097990-mRNA-1:exon:5286;Parent=Msa1097990-mRNA-1 |
| chr7_3 | exon | 24284259 | 24284388 | 24284259 | ID=Msa1097990-mRNA-1:exon:5285;Parent=Msa1097990-mRNA-1 |
| chr7_3 | exon | 24286013 | 24286443 | 24286013 | ID=Msa1097990-mRNA-1:exon:5284;Parent=Msa1097990-mRNA-1 |
| chr7_3 | exon | 24287492 | 24287587 | 24287492 | ID=Msa1097990-mRNA-1:exon:5283;Parent=Msa1097990-mRNA-1 |
| chr7_3 | exon | 24287701 | 24287755 | 24287701 | ID=Msa1097990-mRNA-1:exon:5282;Parent=Msa1097990-mRNA-1 |
| chr7_3 | exon | 24288378 | 24288474 | 24288378 | ID=Msa1097990-mRNA-1:exon:5281;Parent=Msa1097990-mRNA-1 |
| chr7_3 | exon | 24288638 | 24288808 | 24288638 | ID=Msa1097990-mRNA-1:exon:5280;Parent=Msa1097990-mRNA-1 |
| chr7_3 | five_prime_UTR | 24288753 | 24288808 | 24288753 | ID=Msa1097990-mRNA-1:five_prime_utr;Parent=Msa1097990-mRNA-1 |
| chr7_3 | CDS | 24288638 | 24288752 | 24288638 | ID=Msa1097990-mRNA-1:cds;Parent=Msa1097990-mRNA-1 |
| chr7_3 | CDS | 24288378 | 24288474 | 24288378 | ID=Msa1097990-mRNA-1:cds;Parent=Msa1097990-mRNA-1 |
| chr7_3 | CDS | 24287701 | 24287755 | 24287701 | ID=Msa1097990-mRNA-1:cds;Parent=Msa1097990-mRNA-1 |
| chr7_3 | CDS | 24287492 | 24287587 | 24287492 | ID=Msa1097990-mRNA-1:cds;Parent=Msa1097990-mRNA-1 |
| chr7_3 | CDS | 24286013 | 24286443 | 24286013 | ID=Msa1097990-mRNA-1:cds;Parent=Msa1097990-mRNA-1 |
| chr7_3 | CDS | 24284259 | 24284388 | 24284259 | ID=Msa1097990-mRNA-1:cds;Parent=Msa1097990-mRNA-1 |
| chr7_3 | CDS | 24283044 | 24283154 | 24283044 | ID=Msa1097990-mRNA-1:cds;Parent=Msa1097990-mRNA-1 |
| chr7_3 | three_prime_UTR | 24282768 | 24283043 | 24282768 | ID=Msa1097990-mRNA-1:three_prime_utr;Parent=Msa1097990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
