Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1098170 | KEH21752.1 | 61.078 | 167 | 20 | 3 | 10 | 145 | 18 | 170 | 6.00e-51 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1098170 | sp|Q7PCC6|FDP_ARATH | 46.729 | 107 | 38 | 2 | 58 | 145 | 105 | 211 | 4.72e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1098170 | A0A072TWD0 | 61.078 | 167 | 20 | 3 | 10 | 145 | 18 | 170 | 2.86e-51 | 172 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1098170 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1098170 | MtrunA17_Chr5g0405951 | 47.529 | 263 | 32 | 6 | 1 | 183 | 1 | 237 | 3.07e-50 | 162 |
| Msa1098170 | MtrunA17_Chr7g0254991 | 56.962 | 79 | 29 | 3 | 65 | 141 | 217 | 292 | 5.54e-15 | 71.2 |
| Msa1098170 | MtrunA17_Chr4g0044771 | 42.202 | 109 | 57 | 2 | 37 | 145 | 246 | 348 | 1.16e-14 | 70.9 |
| Msa1098170 | MtrunA17_Chr3g0133971 | 70.833 | 48 | 14 | 0 | 98 | 145 | 352 | 399 | 3.52e-14 | 69.7 |
| Msa1098170 | MtrunA17_Chr3g0080341 | 72.340 | 47 | 13 | 0 | 98 | 144 | 251 | 297 | 5.46e-14 | 68.6 |
| Msa1098170 | MtrunA17_Chr8g0355121 | 34.921 | 189 | 73 | 9 | 13 | 157 | 123 | 305 | 6.48e-14 | 68.6 |
| Msa1098170 | MtrunA17_Chr2g0321411 | 37.241 | 145 | 64 | 5 | 16 | 141 | 117 | 253 | 7.08e-14 | 68.2 |
| Msa1098170 | MtrunA17_Chr4g0051101 | 45.882 | 85 | 44 | 2 | 63 | 145 | 93 | 177 | 5.45e-12 | 61.6 |
| Msa1098170 | MtrunA17_Chr7g0266211 | 34.000 | 150 | 86 | 3 | 34 | 174 | 273 | 418 | 8.27e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1098170 | AT2G17770.2 | 46.729 | 107 | 38 | 2 | 58 | 145 | 66 | 172 | 4.15e-18 | 78.2 |
| Msa1098170 | AT4G35900.1 | 63.492 | 63 | 23 | 0 | 83 | 145 | 200 | 262 | 8.24e-18 | 79.3 |
| Msa1098170 | AT1G45249.1 | 41.525 | 118 | 44 | 4 | 51 | 143 | 265 | 382 | 2.88e-15 | 73.2 |
| Msa1098170 | AT3G56850.1 | 78.723 | 47 | 10 | 0 | 98 | 144 | 226 | 272 | 3.89e-15 | 72.0 |
| Msa1098170 | AT1G45249.7 | 41.525 | 118 | 44 | 4 | 51 | 143 | 280 | 397 | 4.16e-15 | 72.8 |
| Msa1098170 | AT1G45249.6 | 41.525 | 118 | 44 | 4 | 51 | 143 | 280 | 397 | 4.16e-15 | 72.8 |
| Msa1098170 | AT2G36270.1 | 53.247 | 77 | 28 | 2 | 98 | 166 | 356 | 432 | 2.37e-14 | 70.5 |
| Msa1098170 | AT2G36270.2 | 53.247 | 77 | 28 | 2 | 98 | 166 | 356 | 432 | 2.37e-14 | 70.5 |
| Msa1098170 | AT2G41070.5 | 81.818 | 44 | 8 | 0 | 98 | 141 | 191 | 234 | 2.79e-14 | 68.9 |
| Msa1098170 | AT2G41070.4 | 81.818 | 44 | 8 | 0 | 98 | 141 | 200 | 243 | 3.84e-14 | 68.9 |
| Msa1098170 | AT2G41070.3 | 81.818 | 44 | 8 | 0 | 98 | 141 | 191 | 234 | 4.07e-14 | 68.9 |
| Msa1098170 | AT2G41070.1 | 81.818 | 44 | 8 | 0 | 98 | 141 | 191 | 234 | 4.07e-14 | 68.9 |
| Msa1098170 | AT2G41070.2 | 81.818 | 44 | 8 | 0 | 98 | 141 | 191 | 234 | 4.07e-14 | 68.9 |
| Msa1098170 | AT4G34000.1 | 61.290 | 62 | 21 | 1 | 98 | 159 | 373 | 431 | 1.65e-13 | 68.2 |
| Msa1098170 | AT4G34000.4 | 61.290 | 62 | 21 | 1 | 98 | 159 | 373 | 431 | 1.65e-13 | 68.2 |
| Msa1098170 | AT4G34000.2 | 61.290 | 62 | 21 | 1 | 98 | 159 | 373 | 431 | 1.65e-13 | 68.2 |
| Msa1098170 | AT2G36270.3 | 72.727 | 44 | 12 | 0 | 98 | 141 | 356 | 399 | 5.64e-13 | 66.6 |
| Msa1098170 | AT4G34000.3 | 69.565 | 46 | 14 | 0 | 98 | 143 | 373 | 418 | 1.16e-12 | 65.9 |
| Msa1098170 | AT1G49720.2 | 66.667 | 48 | 16 | 0 | 98 | 145 | 312 | 359 | 1.66e-12 | 65.1 |
| Msa1098170 | AT3G19290.4 | 64.583 | 48 | 17 | 0 | 98 | 145 | 352 | 399 | 1.76e-12 | 65.1 |
| Msa1098170 | AT1G49720.1 | 66.667 | 48 | 16 | 0 | 98 | 145 | 312 | 359 | 1.90e-12 | 65.1 |
| Msa1098170 | AT1G49720.3 | 66.667 | 48 | 16 | 0 | 98 | 145 | 312 | 359 | 1.90e-12 | 65.1 |
| Msa1098170 | AT3G19290.1 | 64.583 | 48 | 17 | 0 | 98 | 145 | 352 | 399 | 2.31e-12 | 64.7 |
| Msa1098170 | AT3G19290.5 | 64.583 | 48 | 17 | 0 | 98 | 145 | 352 | 399 | 2.31e-12 | 64.7 |
| Msa1098170 | AT3G19290.3 | 56.667 | 60 | 24 | 1 | 98 | 157 | 352 | 409 | 2.34e-12 | 64.7 |
| Msa1098170 | AT1G45249.3 | 38.211 | 123 | 41 | 4 | 56 | 143 | 271 | 393 | 3.07e-12 | 64.3 |
| Msa1098170 | AT1G03970.1 | 35.385 | 130 | 73 | 4 | 20 | 145 | 113 | 235 | 2.49e-11 | 61.2 |
Find 29 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGAATAATCGATGCTTT+TGG | 0.258209 | 7_3:-24762960 | None:intergenic |
| TCTAATTCTTTCATTTCTTT+TGG | 0.267657 | 7_3:+24763168 | Msa1098170:CDS |
| AGTACTCGTAATTGTACTTT+TGG | 0.310858 | 7_3:+24762887 | Msa1098170:CDS |
| CCATGGAAGAGGTGTGGAAT+TGG | 0.340299 | 7_3:+24762855 | None:intergenic |
| CATTGAACTAGGGCAATAAA+AGG | 0.373167 | 7_3:-24763032 | None:intergenic |
| GAAGAAAGTTCAGCTATTGC+AGG | 0.441280 | 7_3:+24764676 | Msa1098170:CDS |
| ATAAGAGGATGATCAAGAAT+CGG | 0.446318 | 7_3:+24763238 | Msa1098170:CDS |
| AGAGCAGCAAGTTCAACTAT+TGG | 0.448847 | 7_3:+24763934 | Msa1098170:CDS |
| TTTGGGTGGGTCTGAAGTGA+GGG | 0.456936 | 7_3:-24762942 | None:intergenic |
| CTTGAGTGTGAAAGTCTTGA+AGG | 0.469462 | 7_3:-24762919 | None:intergenic |
| GATGGTGGGGTCATTGAACT+AGG | 0.476787 | 7_3:-24763043 | None:intergenic |
| TAAGAGGATGATCAAGAATC+GGG | 0.505249 | 7_3:+24763239 | Msa1098170:CDS |
| CCAATTCCACACCTCTTCCA+TGG | 0.509593 | 7_3:-24762855 | None:intergenic |
| TCTTATTTCTCCTTTCACTA+CGG | 0.532558 | 7_3:-24763221 | None:intergenic |
| GCGTTCACGAGCTAGAAAAC+AGG | 0.535637 | 7_3:+24763272 | Msa1098170:CDS |
| AAAGAAGTTAACCATGGAAG+AGG | 0.548416 | 7_3:+24762844 | None:intergenic |
| TGAAAATCAGTGACAAGAGA+TGG | 0.550991 | 7_3:-24763061 | None:intergenic |
| ATCAGTGACAAGAGATGGTG+GGG | 0.566918 | 7_3:-24763056 | None:intergenic |
| CTGATATTAGCCGTAGTGAA+AGG | 0.586903 | 7_3:+24763211 | Msa1098170:CDS |
| AATCAGTGACAAGAGATGGT+GGG | 0.594382 | 7_3:-24763057 | None:intergenic |
| GCAGCAAGTTCAACTATTGG+AGG | 0.594793 | 7_3:+24763937 | Msa1098170:CDS |
| AGTTAACCATGGAAGAGGTG+TGG | 0.606460 | 7_3:+24762849 | None:intergenic |
| AAATCAGTGACAAGAGATGG+TGG | 0.615325 | 7_3:-24763058 | None:intergenic |
| ACTTAGAAGACAGCAACAAG+AGG | 0.615687 | 7_3:+24763973 | Msa1098170:CDS |
| ATGGTGGGGTCATTGAACTA+GGG | 0.621945 | 7_3:-24763042 | None:intergenic |
| ACTTCGAAAACAGCAACAAG+AGG | 0.623403 | 7_3:+24764712 | Msa1098170:CDS |
| TCACCGTATGATCAGAATGT+GGG | 0.625766 | 7_3:+24763135 | Msa1098170:intron |
| GTAGTGAAAGGAGAAATAAG+AGG | 0.627501 | 7_3:+24763223 | Msa1098170:CDS |
| TTACGGGAAGCAGAAAGCGT+TGG | 0.638395 | 7_3:+24764962 | Msa1098170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAGAAATATATTAAAC+GGG | - | chr7_3:24763711-24763730 | None:intergenic | 10.0% |
| !! | AATATTAATTAGAGTTATAA+AGG | + | chr7_3:24764500-24764519 | Msa1098170:intron | 10.0% |
| !!! | ATTTAGGTTTTTTTTTTTTT+TGG | + | chr7_3:24764921-24764940 | Msa1098170:intron | 10.0% |
| !!! | TTTAGGTTTTTTTTTTTTTT+GGG | + | chr7_3:24764922-24764941 | Msa1098170:intron | 10.0% |
| !! | TATTTAGAAATATATTAAAC+GGG | - | chr7_3:24763711-24763730 | None:intergenic | 10.0% |
| !! | AATATTAATTAGAGTTATAA+AGG | + | chr7_3:24764500-24764519 | Msa1098170:intron | 10.0% |
| !!! | ATTTAGGTTTTTTTTTTTTT+TGG | + | chr7_3:24764921-24764940 | Msa1098170:intron | 10.0% |
| !!! | TTTAGGTTTTTTTTTTTTTT+GGG | + | chr7_3:24764922-24764941 | Msa1098170:intron | 10.0% |
| !! | TCATGAAAGTTATTAAAAAA+TGG | - | chr7_3:24763417-24763436 | None:intergenic | 15.0% |
| !! | TATGAATTAATCTAGAAAAT+TGG | + | chr7_3:24763567-24763586 | Msa1098170:intron | 15.0% |
| !! | ATTTAGAAATATATTAAACG+GGG | - | chr7_3:24763710-24763729 | None:intergenic | 15.0% |
| !!! | AAAGTTTTATTTGTATATTG+TGG | + | chr7_3:24763755-24763774 | Msa1098170:intron | 15.0% |
| !!! | GTTGAAAATTTTTATGTATT+TGG | + | chr7_3:24764049-24764068 | Msa1098170:intron | 15.0% |
| !!! | TATGTATTTGGAATAAATTT+TGG | + | chr7_3:24764061-24764080 | Msa1098170:intron | 15.0% |
| !! | TTCAAAAAAAAATTATGATG+TGG | + | chr7_3:24764204-24764223 | Msa1098170:intron | 15.0% |
| !!! | AATGAACAATAACTTTTTTT+GGG | - | chr7_3:24764303-24764322 | None:intergenic | 15.0% |
| !!! | TAATGAACAATAACTTTTTT+TGG | - | chr7_3:24764304-24764323 | None:intergenic | 15.0% |
| !! | AGAAAAAAATGTGATATATT+TGG | - | chr7_3:24764812-24764831 | None:intergenic | 15.0% |
| !! | TCATGAAAGTTATTAAAAAA+TGG | - | chr7_3:24763417-24763436 | None:intergenic | 15.0% |
| !! | TATGAATTAATCTAGAAAAT+TGG | + | chr7_3:24763567-24763586 | Msa1098170:intron | 15.0% |
| !! | ATTTAGAAATATATTAAACG+GGG | - | chr7_3:24763710-24763729 | None:intergenic | 15.0% |
| !!! | AAAGTTTTATTTGTATATTG+TGG | + | chr7_3:24763755-24763774 | Msa1098170:intron | 15.0% |
| !!! | GTTGAAAATTTTTATGTATT+TGG | + | chr7_3:24764049-24764068 | Msa1098170:intron | 15.0% |
| !!! | TATGTATTTGGAATAAATTT+TGG | + | chr7_3:24764061-24764080 | Msa1098170:intron | 15.0% |
| !! | TTCAAAAAAAAATTATGATG+TGG | + | chr7_3:24764204-24764223 | Msa1098170:intron | 15.0% |
| !!! | AATGAACAATAACTTTTTTT+GGG | - | chr7_3:24764303-24764322 | None:intergenic | 15.0% |
| !!! | TAATGAACAATAACTTTTTT+TGG | - | chr7_3:24764304-24764323 | None:intergenic | 15.0% |
| !! | AGAAAAAAATGTGATATATT+TGG | - | chr7_3:24764812-24764831 | None:intergenic | 15.0% |
| !!! | TCTAATTCTTTCATTTCTTT+TGG | + | chr7_3:24763168-24763187 | Msa1098170:CDS | 20.0% |
| !!! | TAAATGTATGTTTAGGTTAT+TGG | - | chr7_3:24763318-24763337 | None:intergenic | 20.0% |
| !! | ACAATCATAAATGTATGTTT+AGG | - | chr7_3:24763325-24763344 | None:intergenic | 20.0% |
| !! | TAAACATACATTTATGATTG+TGG | + | chr7_3:24763324-24763343 | Msa1098170:intron | 20.0% |
| !! | AAACATACATTTATGATTGT+GGG | + | chr7_3:24763325-24763344 | Msa1098170:intron | 20.0% |
| !! | TGAAAGTTATTAAAAAATGG+TGG | - | chr7_3:24763414-24763433 | None:intergenic | 20.0% |
| !! | ATGATTTAATTGAATACATG+CGG | - | chr7_3:24763518-24763537 | None:intergenic | 20.0% |
| !! | TTTAGAAATATATTAAACGG+GGG | - | chr7_3:24763709-24763728 | None:intergenic | 20.0% |
| !! | CAAATTAAAGAGAATGAAAT+GGG | - | chr7_3:24764010-24764029 | None:intergenic | 20.0% |
| !! | ACAAATTAAAGAGAATGAAA+TGG | - | chr7_3:24764011-24764030 | None:intergenic | 20.0% |
| !! | AACATAAAATATTTACGATG+TGG | + | chr7_3:24764180-24764199 | Msa1098170:intron | 20.0% |
| !! | TAAGACAAATGTATAAACAA+AGG | + | chr7_3:24764379-24764398 | Msa1098170:intron | 20.0% |
| !! | CAAATTAAAGACAATGAAAT+GGG | - | chr7_3:24764749-24764768 | None:intergenic | 20.0% |
| !! | ACAAATTAAAGACAATGAAA+TGG | - | chr7_3:24764750-24764769 | None:intergenic | 20.0% |
| !!! | TCTAATTCTTTCATTTCTTT+TGG | + | chr7_3:24763168-24763187 | Msa1098170:CDS | 20.0% |
| !!! | TAAATGTATGTTTAGGTTAT+TGG | - | chr7_3:24763318-24763337 | None:intergenic | 20.0% |
| !! | ACAATCATAAATGTATGTTT+AGG | - | chr7_3:24763325-24763344 | None:intergenic | 20.0% |
| !! | TAAACATACATTTATGATTG+TGG | + | chr7_3:24763324-24763343 | Msa1098170:intron | 20.0% |
| !! | AAACATACATTTATGATTGT+GGG | + | chr7_3:24763325-24763344 | Msa1098170:intron | 20.0% |
| !! | TGAAAGTTATTAAAAAATGG+TGG | - | chr7_3:24763414-24763433 | None:intergenic | 20.0% |
| !! | ATGATTTAATTGAATACATG+CGG | - | chr7_3:24763518-24763537 | None:intergenic | 20.0% |
| !! | TTTAGAAATATATTAAACGG+GGG | - | chr7_3:24763709-24763728 | None:intergenic | 20.0% |
| !! | CAAATTAAAGAGAATGAAAT+GGG | - | chr7_3:24764010-24764029 | None:intergenic | 20.0% |
| !! | ACAAATTAAAGAGAATGAAA+TGG | - | chr7_3:24764011-24764030 | None:intergenic | 20.0% |
| !! | AACATAAAATATTTACGATG+TGG | + | chr7_3:24764180-24764199 | Msa1098170:intron | 20.0% |
| !! | TAAGACAAATGTATAAACAA+AGG | + | chr7_3:24764379-24764398 | Msa1098170:intron | 20.0% |
| !! | CAAATTAAAGACAATGAAAT+GGG | - | chr7_3:24764749-24764768 | None:intergenic | 20.0% |
| !! | ACAAATTAAAGACAATGAAA+TGG | - | chr7_3:24764750-24764769 | None:intergenic | 20.0% |
| ! | TTATTAAAAAATGGTGGTAG+GGG | - | chr7_3:24763408-24763427 | None:intergenic | 25.0% |
| ! | GTTATTAAAAAATGGTGGTA+GGG | - | chr7_3:24763409-24763428 | None:intergenic | 25.0% |
| ! | AGTTATTAAAAAATGGTGGT+AGG | - | chr7_3:24763410-24763429 | None:intergenic | 25.0% |
| ! | GTATCATAGAATGATTTGAT+AGG | + | chr7_3:24763589-24763608 | Msa1098170:intron | 25.0% |
| ! | TATTTGTATATTGTGGTGAA+AGG | + | chr7_3:24763762-24763781 | Msa1098170:intron | 25.0% |
| ! | GAAGTATGCTTATAACATAA+AGG | + | chr7_3:24763818-24763837 | Msa1098170:intron | 25.0% |
| !!! | GATTCATTTACTTTTTTGTG+TGG | + | chr7_3:24763885-24763904 | Msa1098170:intron | 25.0% |
| ! | TGTGAAATGAGCAAATAATT+CGG | - | chr7_3:24764354-24764373 | None:intergenic | 25.0% |
| ! | TAACTGTTCTTGTTAAGTAT+TGG | + | chr7_3:24764418-24764437 | Msa1098170:intron | 25.0% |
| !! | ATTGATTCATTTACTTAGTG+TGG | + | chr7_3:24764624-24764643 | Msa1098170:intron | 25.0% |
| ! | TTATTAAAAAATGGTGGTAG+GGG | - | chr7_3:24763408-24763427 | None:intergenic | 25.0% |
| ! | GTTATTAAAAAATGGTGGTA+GGG | - | chr7_3:24763409-24763428 | None:intergenic | 25.0% |
| ! | AGTTATTAAAAAATGGTGGT+AGG | - | chr7_3:24763410-24763429 | None:intergenic | 25.0% |
| ! | GTATCATAGAATGATTTGAT+AGG | + | chr7_3:24763589-24763608 | Msa1098170:intron | 25.0% |
| ! | TATTTGTATATTGTGGTGAA+AGG | + | chr7_3:24763762-24763781 | Msa1098170:intron | 25.0% |
| ! | GAAGTATGCTTATAACATAA+AGG | + | chr7_3:24763818-24763837 | Msa1098170:intron | 25.0% |
| !!! | GATTCATTTACTTTTTTGTG+TGG | + | chr7_3:24763885-24763904 | Msa1098170:intron | 25.0% |
| ! | TGTGAAATGAGCAAATAATT+CGG | - | chr7_3:24764354-24764373 | None:intergenic | 25.0% |
| ! | TAACTGTTCTTGTTAAGTAT+TGG | + | chr7_3:24764418-24764437 | Msa1098170:intron | 25.0% |
| !! | ATTGATTCATTTACTTAGTG+TGG | + | chr7_3:24764624-24764643 | Msa1098170:intron | 25.0% |
| ! | AGTACTCGTAATTGTACTTT+TGG | + | chr7_3:24762887-24762906 | Msa1098170:CDS | 30.0% |
| ! | GAAGAATAATCGATGCTTTT+GGG | - | chr7_3:24762962-24762981 | None:intergenic | 30.0% |
| ! | AGAAGAATAATCGATGCTTT+TGG | - | chr7_3:24762963-24762982 | None:intergenic | 30.0% |
| ! | TCTTATTTCTCCTTTCACTA+CGG | - | chr7_3:24763224-24763243 | None:intergenic | 30.0% |
| ATAAGAGGATGATCAAGAAT+CGG | + | chr7_3:24763238-24763257 | Msa1098170:CDS | 30.0% | |
| ATACATTTATGATTGTGGGT+GGG | + | chr7_3:24763329-24763348 | Msa1098170:intron | 30.0% | |
| TCAAATAGAGATTTGTAGAG+AGG | + | chr7_3:24763539-24763558 | Msa1098170:intron | 30.0% | |
| GTATGCTTATAACATAAAGG+TGG | + | chr7_3:24763821-24763840 | Msa1098170:intron | 30.0% | |
| !!! | CTTTTTTGTGTGGTTATTTC+AGG | + | chr7_3:24763895-24763914 | Msa1098170:intron | 30.0% |
| GCTACACATTATATTATGCT+TGG | + | chr7_3:24764139-24764158 | Msa1098170:intron | 30.0% | |
| ATAATTCGGCTAATTCGAAA+CGG | - | chr7_3:24764340-24764359 | None:intergenic | 30.0% | |
| TATAAACAAAGGAGAGAGAA+AGG | + | chr7_3:24764390-24764409 | Msa1098170:intron | 30.0% | |
| TCACTTTGCATTTATGTTAG+TGG | - | chr7_3:24764452-24764471 | None:intergenic | 30.0% | |
| GAGATATAATGAATTGAGAG+TGG | + | chr7_3:24764470-24764489 | Msa1098170:intron | 30.0% | |
| ! | TTACTTAGTGTGGTTATTTC+AGG | + | chr7_3:24764634-24764653 | Msa1098170:intron | 30.0% |
| GTACTAGTAGGATTGAATTT+AGG | + | chr7_3:24764905-24764924 | Msa1098170:intron | 30.0% | |
| ! | AGTACTCGTAATTGTACTTT+TGG | + | chr7_3:24762887-24762906 | Msa1098170:CDS | 30.0% |
| ! | GAAGAATAATCGATGCTTTT+GGG | - | chr7_3:24762962-24762981 | None:intergenic | 30.0% |
| ! | AGAAGAATAATCGATGCTTT+TGG | - | chr7_3:24762963-24762982 | None:intergenic | 30.0% |
| ! | TCTTATTTCTCCTTTCACTA+CGG | - | chr7_3:24763224-24763243 | None:intergenic | 30.0% |
| ATAAGAGGATGATCAAGAAT+CGG | + | chr7_3:24763238-24763257 | Msa1098170:CDS | 30.0% | |
| ATACATTTATGATTGTGGGT+GGG | + | chr7_3:24763329-24763348 | Msa1098170:intron | 30.0% | |
| TCAAATAGAGATTTGTAGAG+AGG | + | chr7_3:24763539-24763558 | Msa1098170:intron | 30.0% | |
| GTATGCTTATAACATAAAGG+TGG | + | chr7_3:24763821-24763840 | Msa1098170:intron | 30.0% | |
| !!! | CTTTTTTGTGTGGTTATTTC+AGG | + | chr7_3:24763895-24763914 | Msa1098170:intron | 30.0% |
| GCTACACATTATATTATGCT+TGG | + | chr7_3:24764139-24764158 | Msa1098170:intron | 30.0% | |
| ATAATTCGGCTAATTCGAAA+CGG | - | chr7_3:24764340-24764359 | None:intergenic | 30.0% | |
| TATAAACAAAGGAGAGAGAA+AGG | + | chr7_3:24764390-24764409 | Msa1098170:intron | 30.0% | |
| TCACTTTGCATTTATGTTAG+TGG | - | chr7_3:24764452-24764471 | None:intergenic | 30.0% | |
| GAGATATAATGAATTGAGAG+TGG | + | chr7_3:24764470-24764489 | Msa1098170:intron | 30.0% | |
| ! | TTACTTAGTGTGGTTATTTC+AGG | + | chr7_3:24764634-24764653 | Msa1098170:intron | 30.0% |
| GTACTAGTAGGATTGAATTT+AGG | + | chr7_3:24764905-24764924 | Msa1098170:intron | 30.0% | |
| ! | ACTCGTAATTGTACTTTTGG+TGG | + | chr7_3:24762890-24762909 | Msa1098170:CDS | 35.0% |
| !! | AATAATCGATGCTTTTGGGT+GGG | - | chr7_3:24762958-24762977 | None:intergenic | 35.0% |
| !! | ATTTTGATCTGAAGCAACGA+AGG | - | chr7_3:24762999-24763018 | None:intergenic | 35.0% |
| CATTGAACTAGGGCAATAAA+AGG | - | chr7_3:24763035-24763054 | None:intergenic | 35.0% | |
| TGAAAATCAGTGACAAGAGA+TGG | - | chr7_3:24763064-24763083 | None:intergenic | 35.0% | |
| GTAGTGAAAGGAGAAATAAG+AGG | + | chr7_3:24763223-24763242 | Msa1098170:CDS | 35.0% | |
| TAAGAGGATGATCAAGAATC+GGG | + | chr7_3:24763239-24763258 | Msa1098170:CDS | 35.0% | |
| CATACATTTATGATTGTGGG+TGG | + | chr7_3:24763328-24763347 | Msa1098170:intron | 35.0% | |
| TTGTATATTGTGGTGAAAGG+TGG | + | chr7_3:24763765-24763784 | Msa1098170:intron | 35.0% | |
| AACTAACATGTTGCAAGTGT+TGG | + | chr7_3:24764228-24764247 | Msa1098170:intron | 35.0% | |
| TCGAATCGCTCAATTATCAT+AGG | + | chr7_3:24764589-24764608 | Msa1098170:intron | 35.0% | |
| CTCAATTATCATAGGACAGA+GGG | + | chr7_3:24764597-24764616 | Msa1098170:intron | 35.0% | |
| CAATTCCACATAGTACTAGT+AGG | + | chr7_3:24764893-24764912 | Msa1098170:intron | 35.0% | |
| TCAATCCTACTAGTACTATG+TGG | - | chr7_3:24764901-24764920 | None:intergenic | 35.0% | |
| TGTCAATGTGAATGCAGTTA+CGG | + | chr7_3:24764945-24764964 | Msa1098170:intron | 35.0% | |
| ! | ACTCGTAATTGTACTTTTGG+TGG | + | chr7_3:24762890-24762909 | Msa1098170:CDS | 35.0% |
| !! | AATAATCGATGCTTTTGGGT+GGG | - | chr7_3:24762958-24762977 | None:intergenic | 35.0% |
| !! | ATTTTGATCTGAAGCAACGA+AGG | - | chr7_3:24762999-24763018 | None:intergenic | 35.0% |
| CATTGAACTAGGGCAATAAA+AGG | - | chr7_3:24763035-24763054 | None:intergenic | 35.0% | |
| TGAAAATCAGTGACAAGAGA+TGG | - | chr7_3:24763064-24763083 | None:intergenic | 35.0% | |
| GTAGTGAAAGGAGAAATAAG+AGG | + | chr7_3:24763223-24763242 | Msa1098170:CDS | 35.0% | |
| TAAGAGGATGATCAAGAATC+GGG | + | chr7_3:24763239-24763258 | Msa1098170:CDS | 35.0% | |
| CATACATTTATGATTGTGGG+TGG | + | chr7_3:24763328-24763347 | Msa1098170:intron | 35.0% | |
| TTGTATATTGTGGTGAAAGG+TGG | + | chr7_3:24763765-24763784 | Msa1098170:intron | 35.0% | |
| AACTAACATGTTGCAAGTGT+TGG | + | chr7_3:24764228-24764247 | Msa1098170:intron | 35.0% | |
| TCGAATCGCTCAATTATCAT+AGG | + | chr7_3:24764589-24764608 | Msa1098170:intron | 35.0% | |
| CTCAATTATCATAGGACAGA+GGG | + | chr7_3:24764597-24764616 | Msa1098170:intron | 35.0% | |
| CAATTCCACATAGTACTAGT+AGG | + | chr7_3:24764893-24764912 | Msa1098170:intron | 35.0% | |
| TCAATCCTACTAGTACTATG+TGG | - | chr7_3:24764901-24764920 | None:intergenic | 35.0% | |
| TGTCAATGTGAATGCAGTTA+CGG | + | chr7_3:24764945-24764964 | Msa1098170:intron | 35.0% | |
| CTTGAGTGTGAAAGTCTTGA+AGG | - | chr7_3:24762922-24762941 | None:intergenic | 40.0% | |
| ! | GAATAATCGATGCTTTTGGG+TGG | - | chr7_3:24762959-24762978 | None:intergenic | 40.0% |
| AATCAGTGACAAGAGATGGT+GGG | - | chr7_3:24763060-24763079 | None:intergenic | 40.0% | |
| AAATCAGTGACAAGAGATGG+TGG | - | chr7_3:24763061-24763080 | None:intergenic | 40.0% | |
| ACCAAAACATTTCGCACCAA+GGG | + | chr7_3:24763092-24763111 | Msa1098170:intron | 40.0% | |
| ACATTCTGATCATACGGTGA+AGG | - | chr7_3:24763135-24763154 | None:intergenic | 40.0% | |
| TTCACCGTATGATCAGAATG+TGG | + | chr7_3:24763134-24763153 | Msa1098170:intron | 40.0% | |
| TCACCGTATGATCAGAATGT+GGG | + | chr7_3:24763135-24763154 | Msa1098170:intron | 40.0% | |
| ACACCCACATTCTGATCATA+CGG | - | chr7_3:24763141-24763160 | None:intergenic | 40.0% | |
| CTGATATTAGCCGTAGTGAA+AGG | + | chr7_3:24763211-24763230 | Msa1098170:CDS | 40.0% | |
| GGTGGGAATAGAGATTCTTA+GGG | + | chr7_3:24763346-24763365 | Msa1098170:intron | 40.0% | |
| GGAATAGAGATTCTTAGGGA+CGG | + | chr7_3:24763350-24763369 | Msa1098170:intron | 40.0% | |
| ATTCTTAGGGACGGATATAG+AGG | + | chr7_3:24763359-24763378 | Msa1098170:intron | 40.0% | |
| TTCTTAGGGACGGATATAGA+GGG | + | chr7_3:24763360-24763379 | Msa1098170:intron | 40.0% | |
| TAAAAAATGGTGGTAGGGGT+GGG | - | chr7_3:24763404-24763423 | None:intergenic | 40.0% | |
| TTAAAAAATGGTGGTAGGGG+TGG | - | chr7_3:24763405-24763424 | None:intergenic | 40.0% | |
| AGAGCAGCAAGTTCAACTAT+TGG | + | chr7_3:24763934-24763953 | Msa1098170:CDS | 40.0% | |
| ACTTAGAAGACAGCAACAAG+AGG | + | chr7_3:24763973-24763992 | Msa1098170:CDS | 40.0% | |
| !! | GTTGCAAGTGTTGGTGATTT+AGG | + | chr7_3:24764237-24764256 | Msa1098170:intron | 40.0% |
| !! | CAAGTGTTGGTGATTTAGGT+CGG | + | chr7_3:24764241-24764260 | Msa1098170:intron | 40.0% |
| AAACAAAGGAGAGAGAAAGG+TGG | + | chr7_3:24764393-24764412 | Msa1098170:intron | 40.0% | |
| GCTCAATTATCATAGGACAG+AGG | + | chr7_3:24764596-24764615 | Msa1098170:intron | 40.0% | |
| GAAGAAAGTTCAGCTATTGC+AGG | + | chr7_3:24764676-24764695 | Msa1098170:CDS | 40.0% | |
| ACTTCGAAAACAGCAACAAG+AGG | + | chr7_3:24764712-24764731 | Msa1098170:CDS | 40.0% | |
| GTCAATGTGAATGCAGTTAC+GGG | + | chr7_3:24764946-24764965 | Msa1098170:intron | 40.0% | |
| CTTGAGTGTGAAAGTCTTGA+AGG | - | chr7_3:24762922-24762941 | None:intergenic | 40.0% | |
| ! | GAATAATCGATGCTTTTGGG+TGG | - | chr7_3:24762959-24762978 | None:intergenic | 40.0% |
| AATCAGTGACAAGAGATGGT+GGG | - | chr7_3:24763060-24763079 | None:intergenic | 40.0% | |
| AAATCAGTGACAAGAGATGG+TGG | - | chr7_3:24763061-24763080 | None:intergenic | 40.0% | |
| ACCAAAACATTTCGCACCAA+GGG | + | chr7_3:24763092-24763111 | Msa1098170:intron | 40.0% | |
| ACATTCTGATCATACGGTGA+AGG | - | chr7_3:24763135-24763154 | None:intergenic | 40.0% | |
| TTCACCGTATGATCAGAATG+TGG | + | chr7_3:24763134-24763153 | Msa1098170:intron | 40.0% | |
| TCACCGTATGATCAGAATGT+GGG | + | chr7_3:24763135-24763154 | Msa1098170:intron | 40.0% | |
| ACACCCACATTCTGATCATA+CGG | - | chr7_3:24763141-24763160 | None:intergenic | 40.0% | |
| CTGATATTAGCCGTAGTGAA+AGG | + | chr7_3:24763211-24763230 | Msa1098170:CDS | 40.0% | |
| GGTGGGAATAGAGATTCTTA+GGG | + | chr7_3:24763346-24763365 | Msa1098170:intron | 40.0% | |
| GGAATAGAGATTCTTAGGGA+CGG | + | chr7_3:24763350-24763369 | Msa1098170:intron | 40.0% | |
| ATTCTTAGGGACGGATATAG+AGG | + | chr7_3:24763359-24763378 | Msa1098170:intron | 40.0% | |
| TTCTTAGGGACGGATATAGA+GGG | + | chr7_3:24763360-24763379 | Msa1098170:intron | 40.0% | |
| TAAAAAATGGTGGTAGGGGT+GGG | - | chr7_3:24763404-24763423 | None:intergenic | 40.0% | |
| TTAAAAAATGGTGGTAGGGG+TGG | - | chr7_3:24763405-24763424 | None:intergenic | 40.0% | |
| AGAGCAGCAAGTTCAACTAT+TGG | + | chr7_3:24763934-24763953 | Msa1098170:CDS | 40.0% | |
| ACTTAGAAGACAGCAACAAG+AGG | + | chr7_3:24763973-24763992 | Msa1098170:CDS | 40.0% | |
| !! | GTTGCAAGTGTTGGTGATTT+AGG | + | chr7_3:24764237-24764256 | Msa1098170:intron | 40.0% |
| !! | CAAGTGTTGGTGATTTAGGT+CGG | + | chr7_3:24764241-24764260 | Msa1098170:intron | 40.0% |
| AAACAAAGGAGAGAGAAAGG+TGG | + | chr7_3:24764393-24764412 | Msa1098170:intron | 40.0% | |
| GCTCAATTATCATAGGACAG+AGG | + | chr7_3:24764596-24764615 | Msa1098170:intron | 40.0% | |
| GAAGAAAGTTCAGCTATTGC+AGG | + | chr7_3:24764676-24764695 | Msa1098170:CDS | 40.0% | |
| ACTTCGAAAACAGCAACAAG+AGG | + | chr7_3:24764712-24764731 | Msa1098170:CDS | 40.0% | |
| GTCAATGTGAATGCAGTTAC+GGG | + | chr7_3:24764946-24764965 | Msa1098170:intron | 40.0% | |
| ! | ATGGTGGGGTCATTGAACTA+GGG | - | chr7_3:24763045-24763064 | None:intergenic | 45.0% |
| ATCAGTGACAAGAGATGGTG+GGG | - | chr7_3:24763059-24763078 | None:intergenic | 45.0% | |
| CACCAAAACATTTCGCACCA+AGG | + | chr7_3:24763091-24763110 | Msa1098170:intron | 45.0% | |
| !! | ACCCTTGGTGCGAAATGTTT+TGG | - | chr7_3:24763096-24763115 | None:intergenic | 45.0% |
| GGGTGGGAATAGAGATTCTT+AGG | + | chr7_3:24763345-24763364 | Msa1098170:intron | 45.0% | |
| TCTTAGGGACGGATATAGAG+GGG | + | chr7_3:24763361-24763380 | Msa1098170:intron | 45.0% | |
| AAAAAATGGTGGTAGGGGTG+GGG | - | chr7_3:24763403-24763422 | None:intergenic | 45.0% | |
| GCAGCAAGTTCAACTATTGG+AGG | + | chr7_3:24763937-24763956 | Msa1098170:CDS | 45.0% | |
| TTCGGCTAATTCGAAACGGA+GGG | - | chr7_3:24764336-24764355 | None:intergenic | 45.0% | |
| ATTCGGCTAATTCGAAACGG+AGG | - | chr7_3:24764337-24764356 | None:intergenic | 45.0% | |
| ! | ATGGTGGGGTCATTGAACTA+GGG | - | chr7_3:24763045-24763064 | None:intergenic | 45.0% |
| ATCAGTGACAAGAGATGGTG+GGG | - | chr7_3:24763059-24763078 | None:intergenic | 45.0% | |
| CACCAAAACATTTCGCACCA+AGG | + | chr7_3:24763091-24763110 | Msa1098170:intron | 45.0% | |
| !! | ACCCTTGGTGCGAAATGTTT+TGG | - | chr7_3:24763096-24763115 | None:intergenic | 45.0% |
| GGGTGGGAATAGAGATTCTT+AGG | + | chr7_3:24763345-24763364 | Msa1098170:intron | 45.0% | |
| TCTTAGGGACGGATATAGAG+GGG | + | chr7_3:24763361-24763380 | Msa1098170:intron | 45.0% | |
| AAAAAATGGTGGTAGGGGTG+GGG | - | chr7_3:24763403-24763422 | None:intergenic | 45.0% | |
| GCAGCAAGTTCAACTATTGG+AGG | + | chr7_3:24763937-24763956 | Msa1098170:CDS | 45.0% | |
| TTCGGCTAATTCGAAACGGA+GGG | - | chr7_3:24764336-24764355 | None:intergenic | 45.0% | |
| ATTCGGCTAATTCGAAACGG+AGG | - | chr7_3:24764337-24764356 | None:intergenic | 45.0% | |
| !! | TTATTTAGAAATATATTAAA+CGG | - | chr7_3:24763712-24763731 | None:intergenic | 5.0% |
| !! | TTATTTAGAAATATATTAAA+CGG | - | chr7_3:24763712-24763731 | None:intergenic | 5.0% |
| ! | TTTGGGTGGGTCTGAAGTGA+GGG | - | chr7_3:24762945-24762964 | None:intergenic | 50.0% |
| !! | TTTTGGGTGGGTCTGAAGTG+AGG | - | chr7_3:24762946-24762965 | None:intergenic | 50.0% |
| !! | GATGGTGGGGTCATTGAACT+AGG | - | chr7_3:24763046-24763065 | None:intergenic | 50.0% |
| TTTACGCTCGCAGAAACCCT+TGG | - | chr7_3:24763111-24763130 | None:intergenic | 50.0% | |
| GCGTTCACGAGCTAGAAAAC+AGG | + | chr7_3:24763272-24763291 | Msa1098170:CDS | 50.0% | |
| CTTAGGGACGGATATAGAGG+GGG | + | chr7_3:24763362-24763381 | Msa1098170:intron | 50.0% | |
| AAAAATGGTGGTAGGGGTGG+GGG | - | chr7_3:24763402-24763421 | None:intergenic | 50.0% | |
| ! | TTACGGGAAGCAGAAAGCGT+TGG | + | chr7_3:24764962-24764981 | Msa1098170:CDS | 50.0% |
| ! | TTTGGGTGGGTCTGAAGTGA+GGG | - | chr7_3:24762945-24762964 | None:intergenic | 50.0% |
| !! | TTTTGGGTGGGTCTGAAGTG+AGG | - | chr7_3:24762946-24762965 | None:intergenic | 50.0% |
| !! | GATGGTGGGGTCATTGAACT+AGG | - | chr7_3:24763046-24763065 | None:intergenic | 50.0% |
| TTTACGCTCGCAGAAACCCT+TGG | - | chr7_3:24763111-24763130 | None:intergenic | 50.0% | |
| GCGTTCACGAGCTAGAAAAC+AGG | + | chr7_3:24763272-24763291 | Msa1098170:CDS | 50.0% | |
| CTTAGGGACGGATATAGAGG+GGG | + | chr7_3:24763362-24763381 | Msa1098170:intron | 50.0% | |
| AAAAATGGTGGTAGGGGTGG+GGG | - | chr7_3:24763402-24763421 | None:intergenic | 50.0% | |
| ! | TTACGGGAAGCAGAAAGCGT+TGG | + | chr7_3:24764962-24764981 | Msa1098170:CDS | 50.0% |
| AAAATGGTGGTAGGGGTGGG+GGG | - | chr7_3:24763401-24763420 | None:intergenic | 55.0% | |
| AAAATGGTGGTAGGGGTGGG+GGG | - | chr7_3:24763401-24763420 | None:intergenic | 55.0% | |
| GACGGATATAGAGGGGGCTC+TGG | + | chr7_3:24763368-24763387 | Msa1098170:intron | 60.0% | |
| GACGGATATAGAGGGGGCTC+TGG | + | chr7_3:24763368-24763387 | Msa1098170:intron | 60.0% | |
| TGGTGGTAGGGGTGGGGGGC+TGG | - | chr7_3:24763397-24763416 | None:intergenic | 75.0% | |
| TGGTGGTAGGGGTGGGGGGC+TGG | - | chr7_3:24763397-24763416 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 24762857 | 24765000 | 24762857 | ID=Msa1098170;Name=Msa1098170 |
| chr7_3 | mRNA | 24762857 | 24765000 | 24762857 | ID=Msa1098170-mRNA-1;Parent=Msa1098170;Name=Msa1098170-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0|0|0.6|1|1|5|0|183 |
| chr7_3 | exon | 24762857 | 24763069 | 24762857 | ID=Msa1098170-mRNA-1:exon:5385;Parent=Msa1098170-mRNA-1 |
| chr7_3 | exon | 24763150 | 24763293 | 24763150 | ID=Msa1098170-mRNA-1:exon:5386;Parent=Msa1098170-mRNA-1 |
| chr7_3 | exon | 24763917 | 24763994 | 24763917 | ID=Msa1098170-mRNA-1:exon:5387;Parent=Msa1098170-mRNA-1 |
| chr7_3 | exon | 24764656 | 24764733 | 24764656 | ID=Msa1098170-mRNA-1:exon:5388;Parent=Msa1098170-mRNA-1 |
| chr7_3 | exon | 24764962 | 24765000 | 24764962 | ID=Msa1098170-mRNA-1:exon:5389;Parent=Msa1098170-mRNA-1 |
| chr7_3 | CDS | 24762857 | 24763069 | 24762857 | ID=Msa1098170-mRNA-1:cds;Parent=Msa1098170-mRNA-1 |
| chr7_3 | CDS | 24763150 | 24763293 | 24763150 | ID=Msa1098170-mRNA-1:cds;Parent=Msa1098170-mRNA-1 |
| chr7_3 | CDS | 24763917 | 24763994 | 24763917 | ID=Msa1098170-mRNA-1:cds;Parent=Msa1098170-mRNA-1 |
| chr7_3 | CDS | 24764656 | 24764733 | 24764656 | ID=Msa1098170-mRNA-1:cds;Parent=Msa1098170-mRNA-1 |
| chr7_3 | CDS | 24764962 | 24765000 | 24764962 | ID=Msa1098170-mRNA-1:cds;Parent=Msa1098170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
