AlfalfaGEDB | Msa1098310

M. sativa cultivar zhongmu-4 / Msa1098310

KEGG: -
GO: -
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1098310	XP_013447650.1	66.667	120	39	1	348	467	216	334	2.22e-40	159
Msa1098310	XP_013447650.1	91.691	349	28	1	1	348	1	349	0.0	663

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1098310	sp\|Q3E8W4\|ANX2_ARATH	38.393	336	184	7	12	345	491	805	4.13e-59	212

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1098310	A0A072TX13	66.667	120	39	1	348	467	216	334	1.06e-40	159
Msa1098310	A0A072TX13	91.691	349	28	1	1	348	1	349	0.0	663

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1098310	MtrunA17_Chr7g0219831	91.691	349	28	1	1	348	1	349	0.0	663
Msa1098310	MtrunA17_Chr7g0219831	66.667	120	39	1	348	467	216	334	2.05e-44	159
Msa1098310	MtrunA17_Chr7g0220711	70.145	345	96	2	4	348	1	338	6.32e-174	492
Msa1098310	MtrunA17_Chr7g0220711	62.609	115	40	2	354	467	211	323	4.96e-37	139
Msa1098310	MtrunA17_Chr7g0219841	69.767	344	80	1	4	347	1	320	2.20e-171	485
Msa1098310	MtrunA17_Chr7g0219841	59.292	113	45	1	355	467	195	306	1.68e-31	124
Msa1098310	MtrunA17_Chr7g0219871	57.260	365	119	7	4	342	1	354	6.75e-130	381
Msa1098310	MtrunA17_Chr7g0219871	37.755	196	91	6	308	478	167	356	1.46e-25	107
Msa1098310	MtrunA17_Chr7g0245131	38.192	343	190	7	2	342	495	817	4.42e-61	214
Msa1098310	MtrunA17_Chr2g0318301	37.640	356	194	9	30	380	490	822	2.94e-57	203

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1098310	AT5G28680.1	38.393	336	184	7	12	345	491	805	4.20e-60	212
Msa1098310	AT5G28680.2	38.393	336	184	7	12	345	491	805	4.20e-60	212
Msa1098310	AT3G04690.1	38.739	333	181	7	12	342	487	798	2.77e-59	209
Msa1098310	AT3G51550.1	36.735	343	195	6	2	342	496	818	6.80e-58	206
Msa1098310	AT5G59700.1	39.514	329	170	9	27	350	467	771	2.53e-56	201
Msa1098310	AT5G54380.1	37.278	338	187	6	9	343	477	792	3.62e-56	201
Msa1098310	AT3G46290.1	37.719	342	179	9	3	339	451	763	1.50e-55	199
Msa1098310	AT5G38990.1	38.855	332	183	6	13	341	496	810	5.84e-55	197
Msa1098310	AT5G24010.1	38.994	318	165	8	29	341	476	769	1.17e-54	196
Msa1098310	AT5G39000.1	39.157	332	182	6	13	341	489	803	1.79e-54	196

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Find 91 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCTTGAAATATGCAT+TGG	0.505376	7_3:+25132200	Msa1098310:CDS
AAAATTAAAATCGTTGTAAC+AGG	0.311194	7_3:-25134453	None:intergenic
AAACGACAAGTATACGATCT+TGG	0.483113	7_3:+25134150	Msa1098310:CDS
AAAGGTTATCTAAAACATAA+TGG	0.469888	7_3:+25131951	Msa1098310:CDS
AAATACTATCTTTGATAAGA+TGG	0.443976	7_3:+25132928	Msa1098310:CDS
AAATGAGTATCCAGTAGCAT+TGG	0.557214	7_3:+25131977	Msa1098310:CDS
AAATGTGATGTCTATTCCTT+TGG	0.386619	7_3:+25132869	Msa1098310:CDS
AAATGTGATGTTTACTCTTT+TGG	0.200155	7_3:+25134100	Msa1098310:CDS
AAATGTTGGATATTGCTTCC+TGG	0.398844	7_3:-25131823	None:intergenic
AACCTCTCCAAAATGTTAGC+TGG	0.461160	7_3:-25132995	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATCTTCAAGAGAAAATTGA+TGG	-	chr7_3:25131863-25131882	None:intergenic	30.0%
TCGAGTTTCATCAAAGTTAT+TGG	-	chr7_3:25131898-25131917	None:intergenic	30.0%
TTTGATGAAACTCGAAAACT+TGG	+	chr7_3:25131903-25131922	Msa1098310:CDS	30.0%
CTATACAGTATAGTGTACAA+AGG	+	chr7_3:25131933-25131952	Msa1098310:CDS	30.0%
AAAAGGCTTGAAATATGCAT+TGG	+	chr7_3:25132200-25132219	Msa1098310:CDS	30.0%
AATAATGTTGTGGAGTTCAT+CGG	-	chr7_3:25132402-25132421	None:intergenic	30.0%
GTAGAAAATATGGGCATTTA+GGG	-	chr7_3:25132649-25132668	None:intergenic	30.0%
AGTAGAAAATATGGGCATTT+AGG	-	chr7_3:25132650-25132669	None:intergenic	30.0%
CAGAAATTATCGACAAAACT+TGG	-	chr7_3:25132757-25132776	None:intergenic	30.0%
AAATGTGATGTCTATTCCTT+TGG	+	chr7_3:25132869-25132888	Msa1098310:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	25131780	25134471	25131780	ID=Msa1098310;Name=Msa1098310
chr7_3	mRNA	25131780	25134471	25131780	ID=Msa1098310-mRNA-1;Parent=Msa1098310;Name=Msa1098310-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|3\|0\|490
chr7_3	exon	25131780	25132422	25131780	ID=Msa1098310-mRNA-1:exon:5438;Parent=Msa1098310-mRNA-1
chr7_3	exon	25132810	25133208	25132810	ID=Msa1098310-mRNA-1:exon:5439;Parent=Msa1098310-mRNA-1
chr7_3	exon	25134041	25134471	25134041	ID=Msa1098310-mRNA-1:exon:5440;Parent=Msa1098310-mRNA-1
chr7_3	CDS	25131780	25132422	25131780	ID=Msa1098310-mRNA-1:cds;Parent=Msa1098310-mRNA-1
chr7_3	CDS	25132810	25133208	25132810	ID=Msa1098310-mRNA-1:cds;Parent=Msa1098310-mRNA-1
chr7_3	CDS	25134041	25134471	25134041	ID=Msa1098310-mRNA-1:cds;Parent=Msa1098310-mRNA-1

Gene Sequence

>Msa1098310

ATGGGAAATATGCTTGTAAAATATTCAAACCATAAAAGTTCATCCAGGAAGCAATATCCAACATTTATAAAAGAAATATGCCATCAATTTTCTCTTGAAGATCTTAAGAAATCAACCAATAACTTTGATGAAACTCGAAAACTTGGACAATCACTATACAGTATAGTGTACAAAGGTTATCTAAAACATAATGGTGAAAATGAGTATCCAGTAGCATTGGAGAGGATGACACTTAGATTGGGCGATTGGATGTTCAATAAGCTAATTGAACTCCACAGCCAACTTCATCACCCGAATTTGATATCTTTAATAGGATTCTGTGACCATAAAGATGAGAAAATTATAGTGTATGAATATATGTTCAATGGTTCTCTCTATGATCACTTACGTTCAAGGGATTTAGAATCACTCTCGTGGAAGAAAAGGCTTGAAATATGCATTGGAGTTGCAAGAGGACTACACTATCTTCACACCGGAGCAAAGCGAACAATTTTTCACTGTGATATAAAGCCTCAAACCATTCTTTTAGATAACCAAATGGTACCAAAACTCGCGCAACTTGGAATTTCCTTGCAAGAGAAGCGTTCTAAATCAAAGCCAACAATGATTAAACTCGACACCGATGAACTCCACAACATTATTGGTTCGACTGGCCATGGATACATGGCGCCAGAGTGTGTCCGAACCAATGCTTTCACAAATAAATGTGATGTCTATTCCTTTGGTACGGTTCTACTTGAAGTAGCAGGAACAGATTACAAAAATACTATCTTTGATAAGATGGTCAAGTTAGGGAACACAGATTGGTTTTTAGAAAAGTCATCTAATCCAGCTAACATTTTGGAGAGGTTACCAACTGATGAGATTATTGATCCCATTCTCATGAGATTGATCGCGCCGCAATGTTTGGAAGTGTTCATGGATATCATGAAAAGATGTTTGAATATAGAACCAAATGAAAGGCCGACGATAGGTGAGGTTGAGGTTGAACTTGAGCATGCTCTGGCACTGCAGGAGGAAGCAGATTGTGGAAAAAGTAATGGTACAACTGGCCATGGTTACACGGCGCCAAAGTGTGTCCGAACAAATACTTTCACAAATAAATGTGATGTTTACTCTTTTGGTATGGTTCTACTTGATGTAGCATGCACAAACGACAAGTATACGATCTTGGATAAGATGAAAATGTTCATGGGCAAAATTGAGTTCTTAGAAAAGGATATAATTAATGAAGTTAGTTTTTTCGAGAAGTTCCTAGATGCTGAGATTATGGATCCCATTCTTATAAGATTGATTGCACCAATATCTTTGGCAGTGTTCATGGATATCATGAAAATACGTTTGAATATAGAACCAAATGAAAAACCAACAATGGGCGACGTTGTCGTTGAGGTTGAATACAATTCTTGGAATAACAAAGAAAAGAAAAGGAAAATATATCCTTTCCAAATGTTCCTGTTACAACGATTTTAA

Protein sequence

>Msa1098310

MGNMLVKYSNHKSSSRKQYPTFIKEICHQFSLEDLKKSTNNFDETRKLGQSLYSIVYKGYLKHNGENEYPVALERMTLRLGDWMFNKLIELHSQLHHPNLISLIGFCDHKDEKIIVYEYMFNGSLYDHLRSRDLESLSWKKRLEICIGVARGLHYLHTGAKRTIFHCDIKPQTILLDNQMVPKLAQLGISLQEKRSKSKPTMIKLDTDELHNIIGSTGHGYMAPECVRTNAFTNKCDVYSFGTVLLEVAGTDYKNTIFDKMVKLGNTDWFLEKSSNPANILERLPTDEIIDPILMRLIAPQCLEVFMDIMKRCLNIEPNERPTIGEVEVELEHALALQEEADCGKSNGTTGHGYTAPKCVRTNTFTNKCDVYSFGMVLLDVACTNDKYTILDKMKMFMGKIEFLEKDIINEVSFFEKFLDAEIMDPILIRLIAPISLAVFMDIMKIRLNIEPNEKPTMGDVVVEVEYNSWNNKEKKRKIYPFQMFLLQRF*