Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1098330 | XP_024636348.1 | 60.000 | 165 | 11 | 2 | 1 | 110 | 30 | 194 | 3.42e-49 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1098330 | A0A2K3N4Y4 | 55.844 | 154 | 24 | 1 | 1 | 110 | 33 | 186 | 2.25e-45 | 165 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1098330 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1098330 | MtrunA17_Chr8g0363841 | 53.333 | 165 | 22 | 2 | 1 | 110 | 30 | 194 | 1.10e-46 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 23 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAGTGTAGACATAATTA+TGG | 0.251976 | 7_3:+25327478 | None:intergenic |
| ATTATTCTTAAACCCTTCTT+TGG | 0.257903 | 7_3:+25331633 | None:intergenic |
| ATGTTAGCAAGGAAGGAGTT+TGG | 0.356508 | 7_3:-25331540 | Msa1098330:CDS |
| GGGTTTAAGAATAATGAATA+TGG | 0.371754 | 7_3:-25331625 | Msa1098330:CDS |
| AACAGTAAAACTCTTTAAAA+CGG | 0.389800 | 7_3:+25331656 | None:intergenic |
| CAAGCACATGCCTTCAAAAC+AGG | 0.394361 | 7_3:-25331733 | Msa1098330:CDS |
| CAGGATTTAGTGTAAGAAAA+GGG | 0.432600 | 7_3:-25331714 | Msa1098330:CDS |
| AAGTTGAAATTGATTGAAGC+TGG | 0.434164 | 7_3:-25327456 | Msa1098330:CDS |
| ACAGGATTTAGTGTAAGAAA+AGG | 0.440176 | 7_3:-25331715 | Msa1098330:CDS |
| AGGTTTAATGTTAGCAAGGA+AGG | 0.442161 | 7_3:-25331547 | Msa1098330:CDS |
| ACAGTAAAACTCTTTAAAAC+GGG | 0.452807 | 7_3:+25331657 | None:intergenic |
| AGTTGAAATTGATTGAAGCT+GGG | 0.466350 | 7_3:-25327455 | Msa1098330:CDS |
| GTCGGTGGATATAACAATCT+TGG | 0.477476 | 7_3:-25327519 | Msa1098330:CDS |
| CTTATGAAAGAGCTGATTCA+AGG | 0.480001 | 7_3:-25331591 | Msa1098330:CDS |
| AAGGACAAATTGCAAAGCTA+TGG | 0.528165 | 7_3:-25331572 | Msa1098330:CDS |
| ATTTAGTGTAAGAAAAGGGA+GGG | 0.556280 | 7_3:-25331710 | Msa1098330:CDS |
| GATTTAGTGTAAGAAAAGGG+AGG | 0.567737 | 7_3:-25331711 | Msa1098330:CDS |
| TAATGAATATGGAGGTGAAG+TGG | 0.572461 | 7_3:-25331614 | Msa1098330:CDS |
| GGTGAGGTTTAATGTTAGCA+AGG | 0.579640 | 7_3:-25331551 | Msa1098330:CDS |
| TATTTAGGGGAAGAGGTCGG+TGG | 0.586341 | 7_3:-25327534 | Msa1098330:intron |
| GTTGAAATTGATTGAAGCTG+GGG | 0.593382 | 7_3:-25327454 | Msa1098330:CDS |
| TTTAAGAATAATGAATATGG+AGG | 0.604513 | 7_3:-25331622 | Msa1098330:CDS |
| CAAATTGCAAAGCTATGGTG+AGG | 0.629755 | 7_3:-25331567 | Msa1098330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTATTTGAATTGA+AGG | - | chr7_3:25328033-25328052 | Msa1098330:intron | 10.0% |
| !!! | ATTTTGTTTAAGAAAATAAA+AGG | - | chr7_3:25328274-25328293 | Msa1098330:intron | 10.0% |
| !! | AAATAAAATTGAATTGAAAT+TGG | - | chr7_3:25330796-25330815 | Msa1098330:intron | 10.0% |
| !!! | TTGATTTAAAGTTTGAAAAT+TGG | - | chr7_3:25328140-25328159 | Msa1098330:intron | 15.0% |
| !! | AAAATAAAAGGAAAATCAAT+GGG | - | chr7_3:25328286-25328305 | Msa1098330:intron | 15.0% |
| !!! | TCATTTTCTAAATAAACTTT+GGG | + | chr7_3:25328320-25328339 | None:intergenic | 15.0% |
| !!! | ATCATTTTCTAAATAAACTT+TGG | + | chr7_3:25328321-25328340 | None:intergenic | 15.0% |
| !!! | GATATTGTTCATATTTTTTT+TGG | - | chr7_3:25328347-25328366 | Msa1098330:intron | 15.0% |
| !!! | AATTTTGAACAAGTATTTTT+AGG | - | chr7_3:25331524-25331543 | Msa1098330:intron | 15.0% |
| !!! | ACAAATATTTGGAATTATTT+AGG | - | chr7_3:25331639-25331658 | Msa1098330:CDS | 15.0% |
| !!! | CAAATATTTGGAATTATTTA+GGG | - | chr7_3:25331640-25331659 | Msa1098330:CDS | 15.0% |
| !!! | AAATATTTGGAATTATTTAG+GGG | - | chr7_3:25331641-25331660 | Msa1098330:CDS | 15.0% |
| !!! | AACAGTAAAACTCTTTAAAA+CGG | + | chr7_3:25327535-25327554 | None:intergenic | 20.0% |
| !! | TTTAAGAATAATGAATATGG+AGG | - | chr7_3:25327566-25327585 | Msa1098330:intron | 20.0% |
| !! | AAGAAAAAATGAGATATCAA+AGG | + | chr7_3:25327798-25327817 | None:intergenic | 20.0% |
| !!! | TTTGATATCTCATTTTTTCT+TGG | - | chr7_3:25327797-25327816 | Msa1098330:intron | 20.0% |
| !!! | TTGATATCTCATTTTTTCTT+GGG | - | chr7_3:25327798-25327817 | Msa1098330:intron | 20.0% |
| !!! | ACAAAAACAAAAACCATTTT+TGG | + | chr7_3:25328117-25328136 | None:intergenic | 20.0% |
| !!! | AAAATGGTTTTTGTTTTTGT+TGG | - | chr7_3:25328117-25328136 | Msa1098330:intron | 20.0% |
| !! | GAAAATAAAAGGAAAATCAA+TGG | - | chr7_3:25328285-25328304 | Msa1098330:intron | 20.0% |
| !!! | TTGCAATTTAATTTTTACCA+AGG | + | chr7_3:25328631-25328650 | None:intergenic | 20.0% |
| !! | ACTAACATTTATCAAGAAAT+TGG | - | chr7_3:25329086-25329105 | Msa1098330:intron | 20.0% |
| !!! | ACATTTCTTGATATTTTTTG+TGG | + | chr7_3:25329230-25329249 | None:intergenic | 20.0% |
| !! | AAAATTCCATAAAAATTCCT+AGG | + | chr7_3:25329419-25329438 | None:intergenic | 20.0% |
| !!! | GGAATTTTTGTAAGAAATTT+TGG | - | chr7_3:25329431-25329450 | Msa1098330:intron | 20.0% |
| !!! | TTTTTCATTCTTTACAAATC+TGG | - | chr7_3:25329904-25329923 | Msa1098330:intron | 20.0% |
| !! | TAATTCGTAACATAAATATG+TGG | + | chr7_3:25329968-25329987 | None:intergenic | 20.0% |
| !!! | TTTAGTTTGTTATTTTTGCA+GGG | + | chr7_3:25330691-25330710 | None:intergenic | 20.0% |
| !!! | TTTTAGTTTGTTATTTTTGC+AGG | + | chr7_3:25330692-25330711 | None:intergenic | 20.0% |
| !! | TGCAAAAATAACAAACTAAA+AGG | - | chr7_3:25330691-25330710 | Msa1098330:intron | 20.0% |
| !!! | AAGTTTTGTTATTTGCATTT+TGG | + | chr7_3:25330718-25330737 | None:intergenic | 20.0% |
| !!! | TGCAAATAACAAAACTTTTA+AGG | - | chr7_3:25330721-25330740 | Msa1098330:intron | 20.0% |
| !!! | GCAAATAACAAAACTTTTAA+GGG | - | chr7_3:25330722-25330741 | Msa1098330:intron | 20.0% |
| !!! | TGCAATTAGTAACAATTTTT+AGG | - | chr7_3:25330751-25330770 | Msa1098330:intron | 20.0% |
| !!! | TTGAATTGAAATTGGTAATA+TGG | - | chr7_3:25330804-25330823 | Msa1098330:intron | 20.0% |
| !! | ACGATTAAAAAATGACAAAA+CGG | - | chr7_3:25330845-25330864 | Msa1098330:intron | 20.0% |
| !!! | ACAAATTTTAGAAACTAAAC+AGG | - | chr7_3:25331059-25331078 | Msa1098330:intron | 20.0% |
| !!! | CAAATTTTAGAAACTAAACA+GGG | - | chr7_3:25331060-25331079 | Msa1098330:intron | 20.0% |
| !!! | TTTAACTGCAATTTTTGAAA+TGG | - | chr7_3:25331139-25331158 | Msa1098330:intron | 20.0% |
| !!! | GCATCTTATTTCAATATTAT+TGG | + | chr7_3:25331288-25331307 | None:intergenic | 20.0% |
| !!! | TATTTTTAGGTCCAAAATTA+GGG | - | chr7_3:25331537-25331556 | Msa1098330:CDS | 20.0% |
| !! | AGAAATATGTCAAATTTCAA+AGG | - | chr7_3:25331576-25331595 | Msa1098330:CDS | 20.0% |
| !!! | ACAGTAAAACTCTTTAAAAC+GGG | + | chr7_3:25327534-25327553 | None:intergenic | 25.0% |
| ! | ATTATTCTTAAACCCTTCTT+TGG | + | chr7_3:25327558-25327577 | None:intergenic | 25.0% |
| ! | GGGTTTAAGAATAATGAATA+TGG | - | chr7_3:25327563-25327582 | Msa1098330:intron | 25.0% |
| ! | ATGAGATATCAAAGGTTAAA+AGG | + | chr7_3:25327790-25327809 | None:intergenic | 25.0% |
| ! | CATAGATATTCTTAGATGTA+TGG | + | chr7_3:25328455-25328474 | None:intergenic | 25.0% |
| ! | TGAAATGCATGAAATATGAA+AGG | - | chr7_3:25328687-25328706 | Msa1098330:intron | 25.0% |
| !! | CTTTGAAAATTGCTTATGAT+AGG | + | chr7_3:25328861-25328880 | None:intergenic | 25.0% |
| !! | CTATCATAAGCAATTTTCAA+AGG | - | chr7_3:25328859-25328878 | Msa1098330:intron | 25.0% |
| ! | TTATGAGTGTGAGAATTATA+GGG | - | chr7_3:25328892-25328911 | Msa1098330:intron | 25.0% |
| ! | TTCACAAAGTCATATGATAT+AGG | - | chr7_3:25329061-25329080 | Msa1098330:intron | 25.0% |
| !! | TTTTTGTGGAATTTTTGTGA+TGG | + | chr7_3:25329216-25329235 | None:intergenic | 25.0% |
| !!! | TATTTCTGATGTTTTTGTGA+TGG | + | chr7_3:25329384-25329403 | None:intergenic | 25.0% |
| ! | AAATACATCAAGAAATACCT+AGG | - | chr7_3:25329399-25329418 | Msa1098330:intron | 25.0% |
| !! | GAAATACCTAGGAATTTTTA+TGG | - | chr7_3:25329410-25329429 | Msa1098330:intron | 25.0% |
| !! | AGAAATTTTGGATTTATCAG+AGG | - | chr7_3:25329443-25329462 | Msa1098330:intron | 25.0% |
| ! | GTGTAAGAAAATTCGAAAAT+AGG | + | chr7_3:25329872-25329891 | None:intergenic | 25.0% |
| !! | TTCGAATTTTCTTACACTTT+TGG | - | chr7_3:25329875-25329894 | Msa1098330:intron | 25.0% |
| !! | TGTGATTATTCTGAGAAATT+TGG | - | chr7_3:25330422-25330441 | Msa1098330:intron | 25.0% |
| !! | CCTTGTTCTTGAATAATTTT+CGG | - | chr7_3:25330480-25330499 | Msa1098330:intron | 25.0% |
| !! | AGAGACTCAAACAATTTTTA+AGG | - | chr7_3:25331206-25331225 | Msa1098330:intron | 25.0% |
| ! | TTTAAGGACTAAAATGAGTT+TGG | - | chr7_3:25331222-25331241 | Msa1098330:intron | 25.0% |
| ! | TTGGCAAAATTCATGAAAAA+GGG | + | chr7_3:25331269-25331288 | None:intergenic | 25.0% |
| ! | ATTGGCAAAATTCATGAAAA+AGG | + | chr7_3:25331270-25331289 | None:intergenic | 25.0% |
| !!! | GTATTTTTAGGTCCAAAATT+AGG | - | chr7_3:25331536-25331555 | Msa1098330:intron | 25.0% |
| ! | GAAATTTGACATATTTCTCA+TGG | + | chr7_3:25331574-25331593 | None:intergenic | 25.0% |
| ! | GTATACGAGTTACAAATATT+TGG | - | chr7_3:25331628-25331647 | Msa1098330:CDS | 25.0% |
| ! | TTTCAGTGTAGACATAATTA+TGG | + | chr7_3:25331713-25331732 | None:intergenic | 25.0% |
| !! | TACACTAAATCCTGTTTTGA+AGG | + | chr7_3:25327468-25327487 | None:intergenic | 30.0% |
| ACAGGATTTAGTGTAAGAAA+AGG | - | chr7_3:25327473-25327492 | Msa1098330:CDS | 30.0% | |
| CAGGATTTAGTGTAAGAAAA+GGG | - | chr7_3:25327474-25327493 | Msa1098330:CDS | 30.0% | |
| ATTTAGTGTAAGAAAAGGGA+GGG | - | chr7_3:25327478-25327497 | Msa1098330:CDS | 30.0% | |
| ! | AGTTTTACTGTTCCAAAGAA+GGG | - | chr7_3:25327543-25327562 | Msa1098330:intron | 30.0% |
| !! | GTCTGTTTTATCTTGGTTTT+CGG | - | chr7_3:25327739-25327758 | Msa1098330:intron | 30.0% |
| !! | TCTGTTTTATCTTGGTTTTC+GGG | - | chr7_3:25327740-25327759 | Msa1098330:intron | 30.0% |
| !!! | TATCTCATTTTTTCTTGGGA+AGG | - | chr7_3:25327802-25327821 | Msa1098330:intron | 30.0% |
| !!! | ATCTCATTTTTTCTTGGGAA+GGG | - | chr7_3:25327803-25327822 | Msa1098330:intron | 30.0% |
| TAGGATACTATAGTCGTTAT+GGG | + | chr7_3:25327897-25327916 | None:intergenic | 30.0% | |
| ATAGGATACTATAGTCGTTA+TGG | + | chr7_3:25327898-25327917 | None:intergenic | 30.0% | |
| TAACGACTATAGTATCCTAT+AGG | - | chr7_3:25327898-25327917 | Msa1098330:intron | 30.0% | |
| TGCAAAAGAAAGTCAAAGTA+TGG | - | chr7_3:25328236-25328255 | Msa1098330:intron | 30.0% | |
| GAATGTTTAGATGAATGCTT+AGG | + | chr7_3:25328397-25328416 | None:intergenic | 30.0% | |
| GCATGTTTAGATGTATGTTT+AGG | + | chr7_3:25328423-25328442 | None:intergenic | 30.0% | |
| AAGACCATAGAATGTAACTA+GGG | + | chr7_3:25328549-25328568 | None:intergenic | 30.0% | |
| ATGAGGCAAAAAATGATAGA+AGG | - | chr7_3:25328724-25328743 | Msa1098330:intron | 30.0% | |
| TGAGGCAAAAAATGATAGAA+GGG | - | chr7_3:25328725-25328744 | Msa1098330:intron | 30.0% | |
| CAAAAAATGATAGAAGGGAT+AGG | - | chr7_3:25328730-25328749 | Msa1098330:intron | 30.0% | |
| ATGTACTTATTGAGAGGTTA+TGG | + | chr7_3:25328825-25328844 | None:intergenic | 30.0% | |
| GCTTATGATAGGAGAATTAT+AGG | + | chr7_3:25328850-25328869 | None:intergenic | 30.0% | |
| GTTATGAGTGTGAGAATTAT+AGG | - | chr7_3:25328891-25328910 | Msa1098330:intron | 30.0% | |
| AAGGATCATGACATATTTCT+AGG | - | chr7_3:25328927-25328946 | Msa1098330:intron | 30.0% | |
| GCACAAAATAGCAAGAAATA+AGG | - | chr7_3:25329485-25329504 | Msa1098330:intron | 30.0% | |
| ! | AGTTTTTGCTTATATATGCC+TGG | + | chr7_3:25329685-25329704 | None:intergenic | 30.0% |
| ! | AAATCTGGACTTGTTCTTAA+AGG | - | chr7_3:25329919-25329938 | Msa1098330:intron | 30.0% |
| ! | AATCTGGACTTGTTCTTAAA+GGG | - | chr7_3:25329920-25329939 | Msa1098330:intron | 30.0% |
| !!! | TGTAGATTTTTGGAACCTTT+TGG | - | chr7_3:25330264-25330283 | Msa1098330:intron | 30.0% |
| !! | GTGATTGATTCGTACAAATT+TGG | - | chr7_3:25330392-25330411 | Msa1098330:intron | 30.0% |
| ! | GATTATTCTGAGAAATTTGG+TGG | - | chr7_3:25330425-25330444 | Msa1098330:intron | 30.0% |
| CCGAAAATTATTCAAGAACA+AGG | + | chr7_3:25330483-25330502 | None:intergenic | 30.0% | |
| ATGAACCAACTACTTAAATG+AGG | - | chr7_3:25330874-25330893 | Msa1098330:intron | 30.0% | |
| AAGTACCTCATTTAAGTAGT+TGG | + | chr7_3:25330882-25330901 | None:intergenic | 30.0% | |
| ! | TTGTCTCTGAGTCTTTTAAT+TGG | + | chr7_3:25331043-25331062 | None:intergenic | 30.0% |
| !! | ACAGGGTTTTAACATATGAA+AGG | - | chr7_3:25331077-25331096 | Msa1098330:intron | 30.0% |
| !! | AAAGTCATTTTGAGTCAGTT+TGG | + | chr7_3:25331122-25331141 | None:intergenic | 30.0% |
| TTGACATAGAATTGAAGTGA+AGG | - | chr7_3:25331165-25331184 | Msa1098330:intron | 30.0% | |
| ATTGTTTGAGTCTCTTCAAT+TGG | + | chr7_3:25331201-25331220 | None:intergenic | 30.0% | |
| ACTAAAATGAGTTTGGATAC+AGG | - | chr7_3:25331229-25331248 | Msa1098330:intron | 30.0% | |
| ! | GAATGCAAGAAAGATGTTTT+TGG | - | chr7_3:25331349-25331368 | Msa1098330:intron | 30.0% |
| CAGTGTAAACAATAGTAAAC+TGG | - | chr7_3:25331459-25331478 | Msa1098330:intron | 30.0% | |
| TCCAAAATTAGGGTATAACA+CGG | - | chr7_3:25331547-25331566 | Msa1098330:CDS | 30.0% | |
| AAGTTGAAATTGATTGAAGC+TGG | - | chr7_3:25331732-25331751 | Msa1098330:CDS | 30.0% | |
| AGTTGAAATTGATTGAAGCT+GGG | - | chr7_3:25331733-25331752 | Msa1098330:CDS | 30.0% | |
| GATTTAGTGTAAGAAAAGGG+AGG | - | chr7_3:25327477-25327496 | Msa1098330:CDS | 35.0% | |
| ! | GAGTTTTACTGTTCCAAAGA+AGG | - | chr7_3:25327542-25327561 | Msa1098330:intron | 35.0% |
| TAATGAATATGGAGGTGAAG+TGG | - | chr7_3:25327574-25327593 | Msa1098330:intron | 35.0% | |
| ! | CTTATGAAAGAGCTGATTCA+AGG | - | chr7_3:25327597-25327616 | Msa1098330:intron | 35.0% |
| AAGGACAAATTGCAAAGCTA+TGG | - | chr7_3:25327616-25327635 | Msa1098330:intron | 35.0% | |
| AGGTTTAATGTTAGCAAGGA+AGG | - | chr7_3:25327641-25327660 | Msa1098330:intron | 35.0% | |
| AAAGTAAAGACGGTTCCTAT+AGG | + | chr7_3:25327916-25327935 | None:intergenic | 35.0% | |
| TCTTCACTTCGTAAACTCTT+AGG | + | chr7_3:25327988-25328007 | None:intergenic | 35.0% | |
| GAGTTTACGAAGTGAAGAAT+TGG | - | chr7_3:25327990-25328009 | Msa1098330:intron | 35.0% | |
| TTTACGAAGTGAAGAATTGG+AGG | - | chr7_3:25327993-25328012 | Msa1098330:intron | 35.0% | |
| TTACGAAGTGAAGAATTGGA+GGG | - | chr7_3:25327994-25328013 | Msa1098330:intron | 35.0% | |
| !! | CCATTTTTGGAAGAGAACTA+CGG | + | chr7_3:25328104-25328123 | None:intergenic | 35.0% |
| ! | GCATGATGTAATATGGACTA+TGG | + | chr7_3:25328527-25328546 | None:intergenic | 35.0% |
| AACTAGGGCATGATGTAATA+TGG | + | chr7_3:25328534-25328553 | None:intergenic | 35.0% | |
| CAAGACCATAGAATGTAACT+AGG | + | chr7_3:25328550-25328569 | None:intergenic | 35.0% | |
| GGCTTAGAATGTAAAGACTT+AGG | + | chr7_3:25328610-25328629 | None:intergenic | 35.0% | |
| AGTCTTTACATTCTAAGCCT+TGG | - | chr7_3:25328611-25328630 | Msa1098330:intron | 35.0% | |
| GCATGAAATATGAAAGGCAA+TGG | - | chr7_3:25328693-25328712 | Msa1098330:intron | 35.0% | |
| AGGCAATGGTTAGTAATATG+AGG | - | chr7_3:25328707-25328726 | Msa1098330:intron | 35.0% | |
| TAGGTCATGTACTTATTGAG+AGG | + | chr7_3:25328831-25328850 | None:intergenic | 35.0% | |
| ATCACGTAAATGTGTGTATG+TGG | + | chr7_3:25328972-25328991 | None:intergenic | 35.0% | |
| TTGTTCTTGAAACGAAGAAG+AGG | + | chr7_3:25329774-25329793 | None:intergenic | 35.0% | |
| TTGTTCTTAAAGGGAGAAGA+AGG | - | chr7_3:25329929-25329948 | Msa1098330:intron | 35.0% | |
| !! | TTAAATGCGAGTTTGTTACG+AGG | + | chr7_3:25330191-25330210 | None:intergenic | 35.0% |
| ! | TGAGAGCTTCTGTAGATTTT+TGG | - | chr7_3:25330254-25330273 | Msa1098330:intron | 35.0% |
| AGATCGTAACAAACTCCAAA+AGG | + | chr7_3:25330282-25330301 | None:intergenic | 35.0% | |
| GTTACGATCTATGAATCACT+CGG | - | chr7_3:25330292-25330311 | Msa1098330:intron | 35.0% | |
| !! | GGATTTGTATTTGTTGTTCC+TGG | - | chr7_3:25330313-25330332 | Msa1098330:intron | 35.0% |
| !! | GTATTTGTTGTTCCTGGAAT+TGG | - | chr7_3:25330319-25330338 | Msa1098330:intron | 35.0% |
| TGAATTTGAATGAACTCGAC+TGG | - | chr7_3:25330355-25330374 | Msa1098330:intron | 35.0% | |
| !! | TCTGAGAAATTTGGTGGATT+AGG | - | chr7_3:25330431-25330450 | Msa1098330:intron | 35.0% |
| !! | CTGAGAAATTTGGTGGATTA+GGG | - | chr7_3:25330432-25330451 | Msa1098330:intron | 35.0% |
| ! | TTCGGTTGTGATTCTGTTTT+TGG | - | chr7_3:25330498-25330517 | Msa1098330:intron | 35.0% |
| !! | TCGGTTGTGATTCTGTTTTT+GGG | - | chr7_3:25330499-25330518 | Msa1098330:intron | 35.0% |
| ATGAGTTGTCACTGAATGAA+TGG | - | chr7_3:25330551-25330570 | Msa1098330:intron | 35.0% | |
| CTATAAATTCCAGTCATCAC+AGG | + | chr7_3:25330592-25330611 | None:intergenic | 35.0% | |
| !!! | TTATTTTTGCAGGGCAAAGT+TGG | + | chr7_3:25330682-25330701 | None:intergenic | 35.0% |
| ACTTGAAATGCAAGAGAACA+TGG | - | chr7_3:25331375-25331394 | Msa1098330:intron | 35.0% | |
| ! | ACCGTGTTATACCCTAATTT+TGG | + | chr7_3:25331551-25331570 | None:intergenic | 35.0% |
| ATTTCAAAGGAGACCTCATA+AGG | - | chr7_3:25331589-25331608 | Msa1098330:CDS | 35.0% | |
| AATTCACCATAGACCTTATG+AGG | + | chr7_3:25331605-25331624 | None:intergenic | 35.0% | |
| ATAAGGTCTATGGTGAATTC+TGG | - | chr7_3:25331606-25331625 | Msa1098330:CDS | 35.0% | |
| TTGGAATTATTTAGGGGAAG+AGG | - | chr7_3:25331647-25331666 | Msa1098330:CDS | 35.0% | |
| AATTATTTAGGGGAAGAGGT+CGG | - | chr7_3:25331651-25331670 | Msa1098330:CDS | 35.0% | |
| GTTGAAATTGATTGAAGCTG+GGG | - | chr7_3:25331734-25331753 | Msa1098330:CDS | 35.0% | |
| CAAATTGCAAAGCTATGGTG+AGG | - | chr7_3:25327621-25327640 | Msa1098330:intron | 40.0% | |
| GGTGAGGTTTAATGTTAGCA+AGG | - | chr7_3:25327637-25327656 | Msa1098330:intron | 40.0% | |
| ATGTTAGCAAGGAAGGAGTT+TGG | - | chr7_3:25327648-25327667 | Msa1098330:intron | 40.0% | |
| AACAAATGTCTTTGCTCAGG+AGG | + | chr7_3:25327716-25327735 | None:intergenic | 40.0% | |
| ! | CTGAGCAAAGACATTTGTTG+CGG | - | chr7_3:25327717-25327736 | Msa1098330:intron | 40.0% |
| ! | TGTTGCGGTCTGTTTTATCT+TGG | - | chr7_3:25327732-25327751 | Msa1098330:intron | 40.0% |
| GTGGATTTGATCCCTTAAAC+GGG | + | chr7_3:25328082-25328101 | None:intergenic | 40.0% | |
| ! | GGTGGATTTGATCCCTTAAA+CGG | + | chr7_3:25328083-25328102 | None:intergenic | 40.0% |
| !! | TTTTTGGAAGAGAACTACGG+TGG | + | chr7_3:25328101-25328120 | None:intergenic | 40.0% |
| CCGTAGTTCTCTTCCAAAAA+TGG | - | chr7_3:25328101-25328120 | Msa1098330:intron | 40.0% | |
| TTGAAGAATGAGAGAGAGAG+AGG | - | chr7_3:25328166-25328185 | Msa1098330:intron | 40.0% | |
| TTCACAATCTTATGCCCTTG+AGG | + | chr7_3:25328192-25328211 | None:intergenic | 40.0% | |
| CATGCCCTAGTTACATTCTA+TGG | - | chr7_3:25328542-25328561 | Msa1098330:intron | 40.0% | |
| TATAGGGCGTATTCAAGTCA+AGG | - | chr7_3:25328908-25328927 | Msa1098330:intron | 40.0% | |
| ACTGCAAAGAAAGAAAGTCC+AGG | - | chr7_3:25329521-25329540 | Msa1098330:intron | 40.0% | |
| AAAGAAAGTCCAGGCCTAAA+GGG | - | chr7_3:25329530-25329549 | Msa1098330:intron | 40.0% | |
| !!! | GTTTTGAAGCGTTGGATCTA+GGG | + | chr7_3:25329616-25329635 | None:intergenic | 40.0% |
| GCAGGAATCAAGAACGAAAA+GGG | + | chr7_3:25330044-25330063 | None:intergenic | 40.0% | |
| AGCAGGAATCAAGAACGAAA+AGG | + | chr7_3:25330045-25330064 | None:intergenic | 40.0% | |
| ! | GATTCACTCTCCTTCTTTTC+TGG | - | chr7_3:25330092-25330111 | Msa1098330:intron | 40.0% |
| CTGGATTGAACCAGAAAAGA+AGG | + | chr7_3:25330105-25330124 | None:intergenic | 40.0% | |
| AGAAGAAGAGGAATCAAAGC+TGG | + | chr7_3:25330124-25330143 | None:intergenic | 40.0% | |
| CACGAAAATTCACCAATTCC+AGG | + | chr7_3:25330334-25330353 | None:intergenic | 40.0% | |
| !! | ATTTGGTGGATTAGGGTTCA+AGG | - | chr7_3:25330439-25330458 | Msa1098330:intron | 40.0% |
| GTCACTGAATGAATGGTGAT+TGG | - | chr7_3:25330558-25330577 | Msa1098330:intron | 40.0% | |
| ! | ATGAATGGTGATTGGTGACT+TGG | - | chr7_3:25330566-25330585 | Msa1098330:intron | 40.0% |
| TGAAATGATCAAAATGCCCC+TGG | - | chr7_3:25330933-25330952 | Msa1098330:intron | 40.0% | |
| GAAATGATCAAAATGCCCCT+GGG | - | chr7_3:25330934-25330953 | Msa1098330:intron | 40.0% | |
| AAAGGACTAAAATGCCCCTA+GGG | - | chr7_3:25331095-25331114 | Msa1098330:intron | 40.0% | |
| GTCGGTGGATATAACAATCT+TGG | - | chr7_3:25331669-25331688 | Msa1098330:CDS | 40.0% | |
| CAAGCACATGCCTTCAAAAC+AGG | - | chr7_3:25327455-25327474 | Msa1098330:CDS | 45.0% | |
| CGCAACAAATGTCTTTGCTC+AGG | + | chr7_3:25327719-25327738 | None:intergenic | 45.0% | |
| AGCAAAACCCTTGAGAATCG+AGG | - | chr7_3:25327834-25327853 | Msa1098330:intron | 45.0% | |
| TTGCCTACGTACCCGTTTAA+GGG | - | chr7_3:25328068-25328087 | Msa1098330:intron | 45.0% | |
| TGTGATGTGTGTGCATGTGT+CGG | - | chr7_3:25328473-25328492 | Msa1098330:intron | 45.0% | |
| GAAAGAAAGTCCAGGCCTAA+AGG | - | chr7_3:25329529-25329548 | Msa1098330:intron | 45.0% | |
| !!! | GATCTAGGGTTTTGACTTCC+TGG | + | chr7_3:25329602-25329621 | None:intergenic | 45.0% |
| !!! | CGTTTTGAAGCGTTGGATCT+AGG | + | chr7_3:25329617-25329636 | None:intergenic | 45.0% |
| AGATCCAACGCTTCAAAACG+TGG | - | chr7_3:25329617-25329636 | Msa1098330:intron | 45.0% | |
| GATCCAACGCTTCAAAACGT+GGG | - | chr7_3:25329618-25329637 | Msa1098330:intron | 45.0% | |
| ATCCAACGCTTCAAAACGTG+GGG | - | chr7_3:25329619-25329638 | Msa1098330:intron | 45.0% | |
| GAAACGGTGAGTAGTTGTGA+GGG | + | chr7_3:25329717-25329736 | None:intergenic | 45.0% | |
| AGAAACGGTGAGTAGTTGTG+AGG | + | chr7_3:25329718-25329737 | None:intergenic | 45.0% | |
| CTGCAGGTTAGAGAGAGAAA+CGG | + | chr7_3:25329733-25329752 | None:intergenic | 45.0% | |
| GTTTCAAGAACAAGCCAGTC+CGG | - | chr7_3:25329781-25329800 | Msa1098330:intron | 45.0% | |
| TACCTCTTCTCCGTTCGATT+TGG | - | chr7_3:25329986-25330005 | Msa1098330:intron | 45.0% | |
| !! | AACTCAAGCATCGATCACTG+AGG | + | chr7_3:25330161-25330180 | None:intergenic | 45.0% |
| ! | ATGAACTCGACTGGTTGTTG+AGG | - | chr7_3:25330364-25330383 | Msa1098330:intron | 45.0% |
| TTTGGGAGAGAGAGAGAATG+TGG | - | chr7_3:25330516-25330535 | Msa1098330:intron | 45.0% | |
| CACGAAATTTCGACAGAGAG+AGG | + | chr7_3:25330913-25330932 | None:intergenic | 45.0% | |
| !! | TTCGAGTCGTTTTAGTCCCA+GGG | + | chr7_3:25330953-25330972 | None:intergenic | 45.0% |
| !! | TTTCGAGTCGTTTTAGTCCC+AGG | + | chr7_3:25330954-25330973 | None:intergenic | 45.0% |
| ACGACTCGAAACGACTCAAA+TGG | - | chr7_3:25330963-25330982 | Msa1098330:intron | 45.0% | |
| GAAAGGACTAAAATGCCCCT+AGG | - | chr7_3:25331094-25331113 | Msa1098330:intron | 45.0% | |
| AAGGACTAAAATGCCCCTAG+GGG | - | chr7_3:25331096-25331115 | Msa1098330:intron | 45.0% | |
| AGGAGACCTCATAAGGTCTA+TGG | - | chr7_3:25331596-25331615 | Msa1098330:CDS | 45.0% | |
| AACCCTTGAGAATCGAGGTC+CGG | - | chr7_3:25327839-25327858 | Msa1098330:intron | 50.0% | |
| !! | TCCGGGAGTTGTTTTCGCTA+CGG | - | chr7_3:25327857-25327876 | Msa1098330:intron | 50.0% |
| !! | GAGTTGTTTTCGCTACGGGA+AGG | - | chr7_3:25327862-25327881 | Msa1098330:intron | 50.0% |
| !! | TTTCGCTACGGGAAGGTGTT+AGG | - | chr7_3:25327869-25327888 | Msa1098330:intron | 50.0% |
| GCGCGCGTAGAAAGTAAAGA+CGG | + | chr7_3:25327926-25327945 | None:intergenic | 50.0% | |
| CTTAAACGGGTACGTAGGCA+AGG | + | chr7_3:25328069-25328088 | None:intergenic | 50.0% | |
| CTTGCCTACGTACCCGTTTA+AGG | - | chr7_3:25328067-25328086 | Msa1098330:intron | 50.0% | |
| GATCCCTTAAACGGGTACGT+AGG | + | chr7_3:25328074-25328093 | None:intergenic | 50.0% | |
| TCCAGGATCCATCTCCCTTT+AGG | + | chr7_3:25329547-25329566 | None:intergenic | 50.0% | |
| CTGATGCGTTTGGATGATCC+AGG | + | chr7_3:25329564-25329583 | None:intergenic | 50.0% | |
| CTGGATCATCCAAACGCATC+AGG | - | chr7_3:25329562-25329581 | Msa1098330:intron | 50.0% | |
| TCCAACGCTTCAAAACGTGG+GGG | - | chr7_3:25329620-25329639 | Msa1098330:intron | 50.0% | |
| CTTCAAAACGTGGGGGAACA+TGG | - | chr7_3:25329627-25329646 | Msa1098330:intron | 50.0% | |
| AGCTTCTCTCTCTTCTCTGC+AGG | + | chr7_3:25329749-25329768 | None:intergenic | 50.0% | |
| CTCCAAATCGAACGGAGAAG+AGG | + | chr7_3:25329991-25330010 | None:intergenic | 50.0% | |
| CGCAGCATCTCCAAATCGAA+CGG | + | chr7_3:25329999-25330018 | None:intergenic | 50.0% | |
| ! | CGATTTGGAGATGCTGCGAA+CGG | - | chr7_3:25330001-25330020 | Msa1098330:intron | 50.0% |
| TGATTCCTGCTGCGATTCTG+AGG | - | chr7_3:25330054-25330073 | Msa1098330:intron | 50.0% | |
| TAACTCCTCAGAATCGCAGC+AGG | + | chr7_3:25330062-25330081 | None:intergenic | 50.0% | |
| ! | CGATTCTGAGGAGTTACGCA+CGG | - | chr7_3:25330066-25330085 | Msa1098330:intron | 50.0% |
| ! | GATTCTGAGGAGTTACGCAC+GGG | - | chr7_3:25330067-25330086 | Msa1098330:intron | 50.0% |
| CGTGTGTGTCAGAGAAGAAG+AGG | + | chr7_3:25330136-25330155 | None:intergenic | 50.0% | |
| GTTACAAGTCCAGTGCCACA+TGG | + | chr7_3:25330650-25330669 | None:intergenic | 50.0% | |
| !! | TCGAGTCGTTTTAGTCCCAG+GGG | + | chr7_3:25330952-25330971 | None:intergenic | 50.0% |
| TTGAGTCAGTTTGGCCCCTA+GGG | + | chr7_3:25331113-25331132 | None:intergenic | 50.0% | |
| TTTGAGTCAGTTTGGCCCCT+AGG | + | chr7_3:25331114-25331133 | None:intergenic | 50.0% | |
| TATTTAGGGGAAGAGGTCGG+TGG | - | chr7_3:25331654-25331673 | Msa1098330:CDS | 50.0% | |
| ACCCTTGAGAATCGAGGTCC+GGG | - | chr7_3:25327840-25327859 | Msa1098330:intron | 55.0% | |
| TCCCGGACCTCGATTCTCAA+GGG | + | chr7_3:25327844-25327863 | None:intergenic | 55.0% | |
| CCCGTAGCGAAAACAACTCC+CGG | + | chr7_3:25327861-25327880 | None:intergenic | 55.0% | |
| !! | CCGGGAGTTGTTTTCGCTAC+GGG | - | chr7_3:25327858-25327877 | Msa1098330:intron | 55.0% |
| TGAGAGAGAGAGAGGCCTCA+AGG | - | chr7_3:25328174-25328193 | Msa1098330:intron | 55.0% | |
| GAGAGAGAGAGAGGCCTCAA+GGG | - | chr7_3:25328175-25328194 | Msa1098330:intron | 55.0% | |
| ! | GCATGTGTCGGTGCTTGTGT+CGG | - | chr7_3:25328485-25328504 | Msa1098330:intron | 55.0% |
| AGTCCAGGCCTAAAGGGAGA+TGG | - | chr7_3:25329536-25329555 | Msa1098330:intron | 55.0% | |
| GATCCATCTCCCTTTAGGCC+TGG | + | chr7_3:25329542-25329561 | None:intergenic | 55.0% | |
| GCCTAAAGGGAGATGGATCC+TGG | - | chr7_3:25329543-25329562 | Msa1098330:intron | 55.0% | |
| ! | TCCAAACGCATCAGGAGCGT+TGG | - | chr7_3:25329570-25329589 | Msa1098330:intron | 55.0% |
| TCCAACGCTCCTGATGCGTT+TGG | + | chr7_3:25329574-25329593 | None:intergenic | 55.0% | |
| !! | CAGGAGCGTTGGATTGATCC+AGG | - | chr7_3:25329581-25329600 | Msa1098330:intron | 55.0% |
| !!! | TCCCCCACGTTTTGAAGCGT+TGG | + | chr7_3:25329624-25329643 | None:intergenic | 55.0% |
| AAAACGTGGGGGAACATGGC+AGG | - | chr7_3:25329631-25329650 | Msa1098330:intron | 55.0% | |
| GAGTTCTTGAAGCTCCGACG+CGG | + | chr7_3:25329848-25329867 | None:intergenic | 55.0% | |
| ! | GTGACTTGGCCTGTGATGAC+TGG | - | chr7_3:25330580-25330599 | Msa1098330:intron | 55.0% |
| TAGCTGACACTTGTGCACCC+TGG | - | chr7_3:25330609-25330628 | Msa1098330:intron | 55.0% | |
| ACTTGTGCACCCTGGACCAA+TGG | - | chr7_3:25330617-25330636 | Msa1098330:intron | 55.0% | |
| ACCAATGGCTGACTGCCATG+TGG | - | chr7_3:25330632-25330651 | Msa1098330:intron | 55.0% | |
| TGAGTCAGTTTGGCCCCTAG+GGG | + | chr7_3:25331112-25331131 | None:intergenic | 55.0% | |
| CTCCCGGACCTCGATTCTCA+AGG | + | chr7_3:25327845-25327864 | None:intergenic | 60.0% | |
| AGCTGTTAAGCTCGCCGGAC+TGG | + | chr7_3:25329798-25329817 | None:intergenic | 60.0% | |
| TCCGGCGAGCTTAACAGCTC+CGG | - | chr7_3:25329799-25329818 | Msa1098330:intron | 60.0% | |
| TTCTTGAAGCTCCGACGCGG+CGG | + | chr7_3:25329845-25329864 | None:intergenic | 60.0% | |
| GGCAGTCAGCCATTGGTCCA+GGG | + | chr7_3:25330629-25330648 | None:intergenic | 60.0% | |
| TGGCAGTCAGCCATTGGTCC+AGG | + | chr7_3:25330630-25330649 | None:intergenic | 60.0% | |
| GCCACATGGCAGTCAGCCAT+TGG | + | chr7_3:25330636-25330655 | None:intergenic | 60.0% | |
| ACGTGGGGGAACATGGCAGG+AGG | - | chr7_3:25329634-25329653 | Msa1098330:intron | 65.0% | |
| GGGGAACATGGCAGGAGGCA+TGG | - | chr7_3:25329639-25329658 | Msa1098330:intron | 65.0% | |
| TGGACGCGCGCACGTGTGAT+TGG | - | chr7_3:25329659-25329678 | Msa1098330:intron | 65.0% | |
| GCCGGAGCTGTTAAGCTCGC+CGG | + | chr7_3:25329803-25329822 | None:intergenic | 65.0% | |
| CGAGCTTAACAGCTCCGGCG+TGG | - | chr7_3:25329804-25329823 | Msa1098330:intron | 65.0% | |
| GCTTAACAGCTCCGGCGTGG+TGG | - | chr7_3:25329807-25329826 | Msa1098330:intron | 65.0% | |
| GGCTGACTGCCATGTGGCAC+TGG | - | chr7_3:25330638-25330657 | Msa1098330:intron | 65.0% | |
| ! | GCGCGCACGTGTGATTGGCC+AGG | - | chr7_3:25329664-25329683 | Msa1098330:intron | 70.0% |
| GCTCCTTCTGGCCACCACGC+CGG | + | chr7_3:25329821-25329840 | None:intergenic | 70.0% | |
| CAGAAGGAGCTCCGCCGCGT+CGG | - | chr7_3:25329831-25329850 | Msa1098330:intron | 70.0% | |
| GCTCCGGCGTGGTGGCCAGA+AGG | - | chr7_3:25329815-25329834 | Msa1098330:intron | 75.0% | |
| CGACGCGGCGGAGCTCCTTC+TGG | + | chr7_3:25329833-25329852 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 25327443 | 25331767 | 25327443 | ID=Msa1098330;Name=Msa1098330 |
| chr7_3 | mRNA | 25327443 | 25331767 | 25327443 | ID=Msa1098330-mRNA-1;Parent=Msa1098330;Name=Msa1098330-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|0|0|2|0|110 |
| chr7_3 | exon | 25331537 | 25331767 | 25331537 | ID=Msa1098330-mRNA-1:exon:5459;Parent=Msa1098330-mRNA-1 |
| chr7_3 | exon | 25327443 | 25327541 | 25327443 | ID=Msa1098330-mRNA-1:exon:5458;Parent=Msa1098330-mRNA-1 |
| chr7_3 | CDS | 25331537 | 25331767 | 25331537 | ID=Msa1098330-mRNA-1:cds;Parent=Msa1098330-mRNA-1 |
| chr7_3 | CDS | 25327443 | 25327541 | 25327443 | ID=Msa1098330-mRNA-1:cds;Parent=Msa1098330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
