Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099040 | XP_024626129.1 | 83.150 | 273 | 46 | 0 | 1 | 273 | 1 | 273 | 5.28e-154 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099040 | sp|Q9LFQ3|SNL2_ARATH | 38.608 | 158 | 93 | 3 | 93 | 250 | 46 | 199 | 3.58e-21 | 96.7 |
| Msa1099040 | sp|Q9LFQ3|SNL2_ARATH | 36.601 | 153 | 93 | 3 | 14 | 166 | 53 | 201 | 3.04e-17 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099040 | A0A396GZV2 | 83.150 | 273 | 46 | 0 | 1 | 273 | 1 | 273 | 2.52e-154 | 440 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1099040 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099040 | MtrunA17_Chr7g0218891 | 83.150 | 273 | 46 | 0 | 1 | 273 | 1 | 273 | 4.85e-158 | 440 |
| Msa1099040 | MtrunA17_Chr4g0075861 | 34.188 | 234 | 145 | 4 | 26 | 259 | 20 | 244 | 1.89e-33 | 125 |
| Msa1099040 | MtrunA17_Chr4g0075861 | 35.673 | 171 | 101 | 5 | 5 | 173 | 81 | 244 | 3.16e-19 | 86.3 |
| Msa1099040 | MtrunA17_Chr4g0075971 | 33.761 | 234 | 146 | 4 | 26 | 259 | 20 | 244 | 8.94e-31 | 120 |
| Msa1099040 | MtrunA17_Chr4g0075971 | 36.257 | 171 | 100 | 5 | 5 | 173 | 81 | 244 | 1.93e-18 | 84.7 |
| Msa1099040 | MtrunA17_Chr3g0077891 | 39.521 | 167 | 93 | 3 | 99 | 259 | 8 | 172 | 6.88e-28 | 105 |
| Msa1099040 | MtrunA17_Chr3g0077891 | 37.952 | 166 | 95 | 3 | 9 | 168 | 4 | 167 | 3.70e-25 | 98.6 |
| Msa1099040 | MtrunA17_Chr1g0206771 | 41.935 | 155 | 81 | 3 | 100 | 254 | 17 | 162 | 1.70e-26 | 102 |
| Msa1099040 | MtrunA17_Chr1g0206771 | 38.462 | 156 | 85 | 4 | 14 | 168 | 17 | 162 | 5.03e-22 | 90.5 |
| Msa1099040 | MtrunA17_Chr3g0077941 | 37.952 | 166 | 96 | 3 | 99 | 259 | 8 | 171 | 2.89e-24 | 96.3 |
| Msa1099040 | MtrunA17_Chr3g0077941 | 36.471 | 170 | 101 | 5 | 9 | 173 | 4 | 171 | 7.09e-21 | 87.0 |
| Msa1099040 | MtrunA17_Chr3g0077881 | 38.554 | 166 | 93 | 4 | 99 | 258 | 8 | 170 | 2.90e-24 | 96.3 |
| Msa1099040 | MtrunA17_Chr3g0077881 | 35.366 | 164 | 98 | 3 | 11 | 168 | 6 | 167 | 3.30e-20 | 85.5 |
| Msa1099040 | MtrunA17_Chr3g0077881 | 45.000 | 80 | 43 | 1 | 186 | 265 | 9 | 87 | 1.90e-13 | 67.0 |
| Msa1099040 | MtrunA17_Chr8g0364231 | 34.737 | 190 | 113 | 5 | 70 | 250 | 4 | 191 | 3.40e-24 | 102 |
| Msa1099040 | MtrunA17_Chr8g0364231 | 39.130 | 138 | 80 | 3 | 29 | 164 | 56 | 191 | 2.14e-20 | 90.9 |
| Msa1099040 | MtrunA17_Chr8g0364231 | 40.860 | 93 | 54 | 1 | 171 | 262 | 25 | 117 | 2.88e-14 | 72.8 |
| Msa1099040 | MtrunA17_Chr3g0077911 | 38.028 | 142 | 86 | 2 | 112 | 252 | 16 | 156 | 1.78e-23 | 93.6 |
| Msa1099040 | MtrunA17_Chr3g0077911 | 39.568 | 139 | 76 | 3 | 32 | 166 | 22 | 156 | 1.54e-22 | 91.3 |
| Msa1099040 | MtrunA17_Chr1g0205821 | 34.969 | 163 | 100 | 3 | 99 | 259 | 13 | 171 | 1.81e-23 | 94.0 |
| Msa1099040 | MtrunA17_Chr1g0205821 | 31.481 | 162 | 105 | 3 | 11 | 170 | 11 | 168 | 1.55e-18 | 80.9 |
| Msa1099040 | MtrunA17_Chr3g0077861 | 38.028 | 142 | 86 | 2 | 112 | 252 | 16 | 156 | 4.37e-23 | 92.8 |
| Msa1099040 | MtrunA17_Chr3g0077861 | 38.849 | 139 | 77 | 3 | 32 | 166 | 22 | 156 | 1.51e-20 | 85.9 |
| Msa1099040 | MtrunA17_Chr1g0205831 | 35.000 | 160 | 83 | 4 | 102 | 259 | 5 | 145 | 1.25e-21 | 89.4 |
| Msa1099040 | MtrunA17_Chr1g0205831 | 34.568 | 162 | 89 | 3 | 16 | 177 | 5 | 149 | 1.36e-21 | 89.0 |
| Msa1099040 | MtrunA17_Chr5g0415031 | 36.620 | 142 | 80 | 3 | 115 | 251 | 57 | 193 | 6.94e-20 | 89.4 |
| Msa1099040 | MtrunA17_Chr5g0415031 | 35.461 | 141 | 83 | 3 | 29 | 165 | 57 | 193 | 8.63e-17 | 80.1 |
| Msa1099040 | MtrunA17_Chr5g0415031 | 46.970 | 66 | 35 | 0 | 201 | 266 | 57 | 122 | 5.00e-12 | 66.2 |
| Msa1099040 | MtrunA17_Chr6g0452001 | 34.177 | 158 | 98 | 3 | 95 | 250 | 59 | 212 | 4.22e-19 | 87.0 |
| Msa1099040 | MtrunA17_Chr6g0452001 | 32.680 | 153 | 97 | 3 | 14 | 164 | 64 | 212 | 8.91e-16 | 77.4 |
| Msa1099040 | MtrunA17_Chr6g0452021 | 33.553 | 152 | 97 | 2 | 99 | 250 | 43 | 190 | 9.29e-19 | 85.5 |
| Msa1099040 | MtrunA17_Chr6g0452021 | 31.788 | 151 | 99 | 2 | 14 | 164 | 44 | 190 | 4.63e-16 | 77.8 |
| Msa1099040 | MtrunA17_Chr6g0452021 | 39.326 | 89 | 50 | 2 | 186 | 272 | 44 | 130 | 9.24e-11 | 62.0 |
| Msa1099040 | MtrunA17_Chr1g0206781 | 31.579 | 133 | 63 | 2 | 91 | 223 | 3 | 107 | 2.71e-14 | 67.8 |
| Msa1099040 | MtrunA17_Chr1g0206781 | 29.545 | 132 | 65 | 2 | 5 | 136 | 3 | 106 | 3.20e-12 | 62.4 |
| Msa1099040 | MtrunA17_Chr1g0206781 | 37.209 | 86 | 52 | 1 | 177 | 262 | 3 | 86 | 6.88e-12 | 61.2 |
| Msa1099040 | MtrunA17_Chr1g0205801 | 45.455 | 77 | 40 | 1 | 100 | 176 | 13 | 87 | 1.23e-13 | 65.9 |
| Msa1099040 | MtrunA17_Chr1g0205801 | 45.455 | 77 | 40 | 1 | 186 | 262 | 13 | 87 | 5.76e-13 | 63.9 |
| Msa1099040 | MtrunA17_Chr1g0205801 | 45.679 | 81 | 41 | 2 | 11 | 90 | 10 | 88 | 1.59e-12 | 62.8 |
| Msa1099040 | MtrunA17_Chr1g0205811 | 41.237 | 97 | 51 | 2 | 100 | 192 | 15 | 109 | 1.43e-13 | 65.9 |
| Msa1099040 | MtrunA17_Chr1g0205811 | 43.750 | 80 | 43 | 1 | 183 | 262 | 12 | 89 | 2.68e-13 | 65.1 |
| Msa1099040 | MtrunA17_Chr1g0205861 | 39.326 | 89 | 50 | 2 | 95 | 183 | 12 | 96 | 6.74e-12 | 61.2 |
| Msa1099040 | MtrunA17_Chr1g0205861 | 42.857 | 77 | 42 | 1 | 186 | 262 | 17 | 91 | 4.16e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099040 | AT5G15020.2 | 38.608 | 158 | 93 | 3 | 93 | 250 | 46 | 199 | 3.53e-22 | 96.7 |
| Msa1099040 | AT5G15020.2 | 36.601 | 153 | 93 | 3 | 14 | 166 | 53 | 201 | 3.06e-18 | 85.1 |
| Msa1099040 | AT5G15020.1 | 38.608 | 158 | 93 | 3 | 93 | 250 | 46 | 199 | 3.64e-22 | 96.7 |
| Msa1099040 | AT5G15020.1 | 36.601 | 153 | 93 | 3 | 14 | 166 | 53 | 201 | 3.09e-18 | 85.1 |
| Msa1099040 | AT1G24190.2 | 37.654 | 162 | 95 | 5 | 91 | 250 | 6 | 163 | 6.20e-22 | 95.9 |
| Msa1099040 | AT1G24190.2 | 35.260 | 173 | 105 | 6 | 3 | 172 | 4 | 172 | 1.49e-19 | 89.0 |
| Msa1099040 | AT1G24190.2 | 45.455 | 66 | 36 | 0 | 201 | 266 | 28 | 93 | 6.40e-11 | 63.2 |
| Msa1099040 | AT1G24190.1 | 37.654 | 162 | 95 | 5 | 91 | 250 | 6 | 163 | 6.45e-22 | 95.9 |
| Msa1099040 | AT1G24190.1 | 35.260 | 173 | 105 | 6 | 3 | 172 | 4 | 172 | 1.59e-19 | 88.6 |
| Msa1099040 | AT1G24190.1 | 41.975 | 81 | 45 | 1 | 186 | 266 | 15 | 93 | 6.23e-11 | 63.2 |
| Msa1099040 | AT1G24190.3 | 37.654 | 162 | 95 | 5 | 91 | 250 | 6 | 163 | 7.03e-22 | 95.5 |
| Msa1099040 | AT1G24190.3 | 35.260 | 173 | 105 | 6 | 3 | 172 | 4 | 172 | 1.58e-19 | 88.6 |
| Msa1099040 | AT1G24190.3 | 45.455 | 66 | 36 | 0 | 201 | 266 | 28 | 93 | 6.07e-11 | 63.2 |
| Msa1099040 | AT1G70030.1 | 35.032 | 157 | 92 | 4 | 96 | 249 | 8 | 157 | 2.75e-21 | 88.2 |
| Msa1099040 | AT1G70030.1 | 36.424 | 151 | 90 | 3 | 14 | 163 | 12 | 157 | 1.36e-20 | 86.3 |
| Msa1099040 | AT1G70060.2 | 35.329 | 167 | 95 | 5 | 90 | 250 | 5 | 164 | 3.95e-20 | 90.5 |
| Msa1099040 | AT1G70060.2 | 33.939 | 165 | 102 | 4 | 3 | 164 | 4 | 164 | 1.13e-18 | 86.3 |
| Msa1099040 | AT1G70060.1 | 35.329 | 167 | 95 | 5 | 90 | 250 | 5 | 164 | 3.95e-20 | 90.5 |
| Msa1099040 | AT1G70060.1 | 33.939 | 165 | 102 | 4 | 3 | 164 | 4 | 164 | 1.13e-18 | 86.3 |
| Msa1099040 | AT3G01320.1 | 30.918 | 207 | 135 | 4 | 47 | 249 | 2 | 204 | 3.73e-19 | 87.8 |
| Msa1099040 | AT3G01320.1 | 30.357 | 224 | 143 | 6 | 14 | 232 | 58 | 273 | 6.09e-19 | 87.0 |
| Msa1099040 | AT3G01320.1 | 51.786 | 56 | 27 | 0 | 201 | 256 | 71 | 126 | 2.21e-11 | 64.7 |
| Msa1099040 | AT3G01320.2 | 30.918 | 207 | 135 | 4 | 47 | 249 | 2 | 204 | 3.91e-19 | 87.4 |
| Msa1099040 | AT3G01320.2 | 30.357 | 224 | 143 | 6 | 14 | 232 | 58 | 273 | 6.50e-19 | 87.0 |
| Msa1099040 | AT3G01320.2 | 51.786 | 56 | 27 | 0 | 201 | 256 | 71 | 126 | 2.27e-11 | 64.7 |
| Msa1099040 | AT1G59890.1 | 33.824 | 136 | 88 | 1 | 115 | 250 | 59 | 192 | 2.59e-18 | 85.1 |
| Msa1099040 | AT1G59890.1 | 33.582 | 134 | 87 | 1 | 31 | 164 | 61 | 192 | 1.98e-16 | 79.7 |
| Msa1099040 | AT1G59890.4 | 33.824 | 136 | 88 | 1 | 115 | 250 | 59 | 192 | 2.63e-18 | 85.1 |
| Msa1099040 | AT1G59890.4 | 33.582 | 134 | 87 | 1 | 31 | 164 | 61 | 192 | 1.98e-16 | 79.7 |
| Msa1099040 | AT1G59890.2 | 33.824 | 136 | 88 | 1 | 115 | 250 | 59 | 192 | 2.69e-18 | 85.1 |
| Msa1099040 | AT1G59890.2 | 33.582 | 134 | 87 | 1 | 31 | 164 | 61 | 192 | 2.18e-16 | 79.3 |
| Msa1099040 | AT1G59890.3 | 33.824 | 136 | 88 | 1 | 115 | 250 | 59 | 192 | 2.71e-18 | 85.1 |
| Msa1099040 | AT1G59890.3 | 33.582 | 134 | 87 | 1 | 31 | 164 | 61 | 192 | 2.08e-16 | 79.3 |
| Msa1099040 | AT1G10450.3 | 34.307 | 137 | 88 | 1 | 117 | 253 | 100 | 234 | 2.31e-17 | 82.4 |
| Msa1099040 | AT1G10450.3 | 32.051 | 156 | 103 | 2 | 31 | 186 | 100 | 252 | 1.45e-16 | 80.1 |
| Msa1099040 | AT1G10450.2 | 34.307 | 137 | 88 | 1 | 117 | 253 | 49 | 183 | 2.46e-17 | 82.4 |
| Msa1099040 | AT1G10450.2 | 32.051 | 156 | 103 | 2 | 31 | 186 | 49 | 201 | 1.47e-16 | 80.1 |
| Msa1099040 | AT1G10450.1 | 34.307 | 137 | 88 | 1 | 117 | 253 | 49 | 183 | 2.46e-17 | 82.4 |
| Msa1099040 | AT1G10450.1 | 32.051 | 156 | 103 | 2 | 31 | 186 | 49 | 201 | 1.47e-16 | 80.1 |
| Msa1099040 | AT1G24230.1 | 25.000 | 244 | 154 | 6 | 3 | 241 | 4 | 223 | 4.26e-17 | 79.0 |
| Msa1099040 | AT1G24230.1 | 28.144 | 167 | 104 | 4 | 95 | 261 | 10 | 160 | 7.86e-14 | 69.7 |
| Msa1099040 | AT1G24200.1 | 31.169 | 154 | 101 | 4 | 96 | 249 | 11 | 159 | 7.41e-15 | 71.6 |
| Msa1099040 | AT1G24200.1 | 28.313 | 166 | 109 | 6 | 1 | 163 | 1 | 159 | 1.79e-11 | 62.4 |
| Msa1099040 | AT1G70030.2 | 28.662 | 157 | 70 | 4 | 96 | 249 | 19 | 136 | 4.22e-12 | 62.8 |
| Msa1099040 | AT1G70030.3 | 35.922 | 103 | 59 | 3 | 96 | 195 | 19 | 117 | 1.14e-11 | 61.2 |
| Msa1099040 | AT5G35610.1 | 42.647 | 68 | 39 | 0 | 201 | 268 | 24 | 91 | 8.58e-11 | 59.7 |
Find 47 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAACAATTTCACGTTAAAT+TGG | 0.277062 | 7_3:+27331484 | Msa1099040:CDS |
| ATAGATTTATTCAAGTTAAC+AGG | 0.306329 | 7_3:+27330437 | Msa1099040:CDS |
| AACATCATTGACAAATTCTT+TGG | 0.313079 | 7_3:-27331130 | None:intergenic |
| TAGAATTGATGATGCAAATC+TGG | 0.365588 | 7_3:+27331361 | Msa1099040:intron |
| TAACTTTCTGAATGTCTTGA+AGG | 0.368309 | 7_3:+27330838 | Msa1099040:CDS |
| AGAACATTGTGACGTCAAAA+AGG | 0.380889 | 7_3:+27330387 | Msa1099040:CDS |
| ATCTGAGGAGGAACAATCTC+TGG | 0.416325 | 7_3:+27330730 | Msa1099040:CDS |
| AACTTCATTGACAAATTCCT+TGG | 0.417950 | 7_3:-27330410 | None:intergenic |
| AGTAGTTCAATCTTGATATA+AGG | 0.418112 | 7_3:-27331032 | None:intergenic |
| TAACTTTCTGAATGTGTTGA+AGG | 0.435901 | 7_3:+27331194 | Msa1099040:CDS |
| AAGGGATTATTTGAAGGTCA+TGG | 0.456386 | 7_3:+27330650 | Msa1099040:CDS |
| GAATCTTGGTGAATTATTGA+AGG | 0.480427 | 7_3:+27330987 | Msa1099040:CDS |
| AGGATTGACGCTGCGAATCT+TGG | 0.486810 | 7_3:+27330973 | Msa1099040:intron |
| AGCTTGATTTCAAATCCATC+AGG | 0.489510 | 7_3:-27330704 | None:intergenic |
| AAATCTCAGTAAATTCTTGA+AGG | 0.490603 | 7_3:+27330631 | Msa1099040:CDS |
| TTCTTGAAGGGATTATTTGA+AGG | 0.491097 | 7_3:+27330644 | Msa1099040:CDS |
| AGCTTGATTTCATATCCATC+AGG | 0.493606 | 7_3:-27331449 | None:intergenic |
| AGCTTGATTTCAAATCCATC+GGG | 0.513708 | 7_3:-27331060 | None:intergenic |
| TTATTGAAGGGATTATTTCA+AGG | 0.513778 | 7_3:+27331000 | Msa1099040:CDS |
| ATAATGAAGAAAATATTTGA+AGG | 0.513952 | 7_3:+27331389 | Msa1099040:CDS |
| AATCTTGGTGAATTATTGAA+GGG | 0.514858 | 7_3:+27330988 | Msa1099040:CDS |
| TTGAACTACTTCATGCCTGA+TGG | 0.515459 | 7_3:+27330689 | Msa1099040:CDS |
| AATCTCAGTAAATTCTTGAA+GGG | 0.520509 | 7_3:+27330632 | Msa1099040:CDS |
| TGAAATCAAGCTTCCATTGG+AGG | 0.531076 | 7_3:+27331460 | Msa1099040:CDS |
| AAGCTTGATTTCAAATCCAT+CGG | 0.533316 | 7_3:-27331061 | None:intergenic |
| AGAGATTCTTCCTCCTCCGA+TGG | 0.538054 | 7_3:-27331084 | None:intergenic |
| TTAAACTACTTCCTACCTGA+TGG | 0.558050 | 7_3:+27331434 | Msa1099040:CDS |
| TGAAATTGTTCCTCCTCCAA+TGG | 0.571267 | 7_3:-27331473 | None:intergenic |
| AATCAAGCTTCCATCGGAGG+AGG | 0.577026 | 7_3:+27331074 | Msa1099040:CDS |
| ATATGAAATCAAGCTTCCAT+TGG | 0.577817 | 7_3:+27331457 | Msa1099040:CDS |
| TTGAACTACTTCATGCCCGA+TGG | 0.579628 | 7_3:+27331045 | Msa1099040:CDS |
| ATTTATTCAAGTTAATCAGA+GGG | 0.582516 | 7_3:+27331161 | Msa1099040:CDS |
| TGATGCATTACAAGAAACAA+AGG | 0.583155 | 7_3:+27330491 | Msa1099040:CDS |
| TGAAATCAAGCTTCCATCGG+AGG | 0.587204 | 7_3:+27331071 | Msa1099040:CDS |
| GATTTATTCAAGTTAATCAG+AGG | 0.587296 | 7_3:+27331160 | Msa1099040:CDS |
| TGAAATCAAGCTTCTATCTG+AGG | 0.589635 | 7_3:+27330715 | Msa1099040:CDS |
| GATTTATTCAAGTTAACAGG+AGG | 0.594070 | 7_3:+27330440 | Msa1099040:CDS |
| TGAAGGATTACAAGAGACAA+AGG | 0.594478 | 7_3:+27331211 | Msa1099040:CDS |
| GATTTATTCAAGCTAATCAG+AGG | 0.600482 | 7_3:+27330804 | Msa1099040:CDS |
| GGGCATCCCGTGATAATGGA+AGG | 0.609215 | 7_3:+27330355 | None:intergenic |
| AATCAAGCTTCCATTGGAGG+AGG | 0.611644 | 7_3:+27331463 | Msa1099040:CDS |
| ATTTATTCAAGTTAACAGGA+GGG | 0.617938 | 7_3:+27330441 | Msa1099040:CDS |
| ATTTGAAATCAAGCTTCCAT+CGG | 0.624462 | 7_3:+27331068 | Msa1099040:CDS |
| TGATTTCATATCCATCAGGT+AGG | 0.626891 | 7_3:-27331445 | None:intergenic |
| AATCAAGCTTCTATCTGAGG+AGG | 0.631110 | 7_3:+27330718 | Msa1099040:CDS |
| TGAAGGATTACAAAACACAA+AGG | 0.632152 | 7_3:+27330855 | Msa1099040:CDS |
| ATTTATTCAAGCTAATCAGA+GGG | 0.642849 | 7_3:+27330805 | Msa1099040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATATAATAAAAAAATAG+TGG | - | chr7_3:27330896-27330915 | None:intergenic | 10.0% |
| !!! | TTTTTTATTATATTGTGAAA+TGG | + | chr7_3:27330900-27330919 | Msa1099040:intron | 10.0% |
| !! | ACAATATAATAAAAAAATAG+TGG | - | chr7_3:27330896-27330915 | None:intergenic | 10.0% |
| !!! | TTTTTTATTATATTGTGAAA+TGG | + | chr7_3:27330900-27330919 | Msa1099040:intron | 10.0% |
| !! | CATTACAATAAAAAAAATAG+TGG | - | chr7_3:27330532-27330551 | None:intergenic | 15.0% |
| !! | GCAATATAATAAAAAAATAG+TGG | - | chr7_3:27331252-27331271 | None:intergenic | 15.0% |
| !!! | TTTTTTATTATATTGCGAAA+TGG | + | chr7_3:27331256-27331275 | Msa1099040:intron | 15.0% |
| !! | ATAATGAAGAAAATATTTGA+AGG | + | chr7_3:27331389-27331408 | Msa1099040:CDS | 15.0% |
| !! | CATTACAATAAAAAAAATAG+TGG | - | chr7_3:27330532-27330551 | None:intergenic | 15.0% |
| !! | GCAATATAATAAAAAAATAG+TGG | - | chr7_3:27331252-27331271 | None:intergenic | 15.0% |
| !!! | TTTTTTATTATATTGCGAAA+TGG | + | chr7_3:27331256-27331275 | Msa1099040:intron | 15.0% |
| !! | ATAATGAAGAAAATATTTGA+AGG | + | chr7_3:27331389-27331408 | Msa1099040:CDS | 15.0% |
| !!! | ATAGATTTATTCAAGTTAAC+AGG | + | chr7_3:27330437-27330456 | Msa1099040:CDS | 20.0% |
| !!! | AACTAATTTATCTATCCTTT+TGG | + | chr7_3:27330584-27330603 | Msa1099040:intron | 20.0% |
| !!! | ATTTATTCAAGTTAATCAGA+GGG | + | chr7_3:27331161-27331180 | Msa1099040:CDS | 20.0% |
| !!! | TGGATTCTATTAATTTTTGT+TGG | + | chr7_3:27331302-27331321 | Msa1099040:intron | 20.0% |
| !!! | TATTAATTTGTCTATCCATT+TGG | + | chr7_3:27331329-27331348 | Msa1099040:intron | 20.0% |
| !! | ATTCTACAAAATATACCAAA+TGG | - | chr7_3:27331347-27331366 | None:intergenic | 20.0% |
| !!! | ATAGATTTATTCAAGTTAAC+AGG | + | chr7_3:27330437-27330456 | Msa1099040:CDS | 20.0% |
| !!! | AACTAATTTATCTATCCTTT+TGG | + | chr7_3:27330584-27330603 | Msa1099040:intron | 20.0% |
| !!! | ATTTATTCAAGTTAATCAGA+GGG | + | chr7_3:27331161-27331180 | Msa1099040:CDS | 20.0% |
| !!! | TGGATTCTATTAATTTTTGT+TGG | + | chr7_3:27331302-27331321 | Msa1099040:intron | 20.0% |
| !!! | TATTAATTTGTCTATCCATT+TGG | + | chr7_3:27331329-27331348 | Msa1099040:intron | 20.0% |
| !! | ATTCTACAAAATATACCAAA+TGG | - | chr7_3:27331347-27331366 | None:intergenic | 20.0% |
| !! | ATTTATTCAAGTTAACAGGA+GGG | + | chr7_3:27330441-27330460 | Msa1099040:CDS | 25.0% |
| !! | ATCCTTTTGGTATATTTTGT+AGG | + | chr7_3:27330597-27330616 | Msa1099040:intron | 25.0% |
| ! | ATCCTACAAAATATACCAAA+AGG | - | chr7_3:27330602-27330621 | None:intergenic | 25.0% |
| ! | AAATCTCAGTAAATTCTTGA+AGG | + | chr7_3:27330631-27330650 | Msa1099040:CDS | 25.0% |
| ! | AATCTCAGTAAATTCTTGAA+GGG | + | chr7_3:27330632-27330651 | Msa1099040:CDS | 25.0% |
| ! | ATTTATTCAAGCTAATCAGA+GGG | + | chr7_3:27330805-27330824 | Msa1099040:CDS | 25.0% |
| ! | AATCTTGGTGAATTATTGAA+GGG | + | chr7_3:27330988-27331007 | Msa1099040:CDS | 25.0% |
| ! | TTATTGAAGGGATTATTTCA+AGG | + | chr7_3:27331000-27331019 | Msa1099040:CDS | 25.0% |
| ! | AGTAGTTCAATCTTGATATA+AGG | - | chr7_3:27330679-27330698 | None:intergenic | 25.0% |
| ! | AACATCATTGACAAATTCTT+TGG | - | chr7_3:27330777-27330796 | None:intergenic | 25.0% |
| !! | GATTTATTCAAGTTAATCAG+AGG | + | chr7_3:27331160-27331179 | Msa1099040:CDS | 25.0% |
| !! | ATTTATTCAAGTTAACAGGA+GGG | + | chr7_3:27330441-27330460 | Msa1099040:CDS | 25.0% |
| !! | ATCCTTTTGGTATATTTTGT+AGG | + | chr7_3:27330597-27330616 | Msa1099040:intron | 25.0% |
| ! | ATCCTACAAAATATACCAAA+AGG | - | chr7_3:27330602-27330621 | None:intergenic | 25.0% |
| ! | AAATCTCAGTAAATTCTTGA+AGG | + | chr7_3:27330631-27330650 | Msa1099040:CDS | 25.0% |
| ! | AATCTCAGTAAATTCTTGAA+GGG | + | chr7_3:27330632-27330651 | Msa1099040:CDS | 25.0% |
| ! | ATTTATTCAAGCTAATCAGA+GGG | + | chr7_3:27330805-27330824 | Msa1099040:CDS | 25.0% |
| ! | AATCTTGGTGAATTATTGAA+GGG | + | chr7_3:27330988-27331007 | Msa1099040:CDS | 25.0% |
| ! | TTATTGAAGGGATTATTTCA+AGG | + | chr7_3:27331000-27331019 | Msa1099040:CDS | 25.0% |
| ! | AGTAGTTCAATCTTGATATA+AGG | - | chr7_3:27330679-27330698 | None:intergenic | 25.0% |
| ! | AACATCATTGACAAATTCTT+TGG | - | chr7_3:27330777-27330796 | None:intergenic | 25.0% |
| !! | GATTTATTCAAGTTAATCAG+AGG | + | chr7_3:27331160-27331179 | Msa1099040:CDS | 25.0% |
| AACTTCATTGACAAATTCCT+TGG | - | chr7_3:27330413-27330432 | None:intergenic | 30.0% | |
| ! | GATTTATTCAAGTTAACAGG+AGG | + | chr7_3:27330440-27330459 | Msa1099040:CDS | 30.0% |
| TGATGCATTACAAGAAACAA+AGG | + | chr7_3:27330491-27330510 | Msa1099040:CDS | 30.0% | |
| TTCTTGAAGGGATTATTTGA+AGG | + | chr7_3:27330644-27330663 | Msa1099040:CDS | 30.0% | |
| ! | GACAAATTCTTTCGCATTTT+TGG | - | chr7_3:27330768-27330787 | None:intergenic | 30.0% |
| GATTTATTCAAGCTAATCAG+AGG | + | chr7_3:27330804-27330823 | Msa1099040:CDS | 30.0% | |
| TAACTTTCTGAATGTCTTGA+AGG | + | chr7_3:27330838-27330857 | Msa1099040:CDS | 30.0% | |
| TGAAGGATTACAAAACACAA+AGG | + | chr7_3:27330855-27330874 | Msa1099040:CDS | 30.0% | |
| GAATCTTGGTGAATTATTGA+AGG | + | chr7_3:27330987-27331006 | Msa1099040:CDS | 30.0% | |
| AAGCTTGATTTCAAATCCAT+CGG | - | chr7_3:27330708-27330727 | None:intergenic | 30.0% | |
| ! | ATTTGAAATCAAGCTTCCAT+CGG | + | chr7_3:27331068-27331087 | Msa1099040:CDS | 30.0% |
| TAACTTTCTGAATGTGTTGA+AGG | + | chr7_3:27331194-27331213 | Msa1099040:CDS | 30.0% | |
| !! | TAGAATTGATGATGCAAATC+TGG | + | chr7_3:27331361-27331380 | Msa1099040:intron | 30.0% |
| ATATGAAATCAAGCTTCCAT+TGG | + | chr7_3:27331457-27331476 | Msa1099040:CDS | 30.0% | |
| GGAACAATTTCACGTTAAAT+TGG | + | chr7_3:27331484-27331503 | Msa1099040:CDS | 30.0% | |
| AACTTCATTGACAAATTCCT+TGG | - | chr7_3:27330413-27330432 | None:intergenic | 30.0% | |
| ! | GATTTATTCAAGTTAACAGG+AGG | + | chr7_3:27330440-27330459 | Msa1099040:CDS | 30.0% |
| TGATGCATTACAAGAAACAA+AGG | + | chr7_3:27330491-27330510 | Msa1099040:CDS | 30.0% | |
| TTCTTGAAGGGATTATTTGA+AGG | + | chr7_3:27330644-27330663 | Msa1099040:CDS | 30.0% | |
| ! | GACAAATTCTTTCGCATTTT+TGG | - | chr7_3:27330768-27330787 | None:intergenic | 30.0% |
| GATTTATTCAAGCTAATCAG+AGG | + | chr7_3:27330804-27330823 | Msa1099040:CDS | 30.0% | |
| TAACTTTCTGAATGTCTTGA+AGG | + | chr7_3:27330838-27330857 | Msa1099040:CDS | 30.0% | |
| TGAAGGATTACAAAACACAA+AGG | + | chr7_3:27330855-27330874 | Msa1099040:CDS | 30.0% | |
| GAATCTTGGTGAATTATTGA+AGG | + | chr7_3:27330987-27331006 | Msa1099040:CDS | 30.0% | |
| AAGCTTGATTTCAAATCCAT+CGG | - | chr7_3:27330708-27330727 | None:intergenic | 30.0% | |
| ! | ATTTGAAATCAAGCTTCCAT+CGG | + | chr7_3:27331068-27331087 | Msa1099040:CDS | 30.0% |
| TAACTTTCTGAATGTGTTGA+AGG | + | chr7_3:27331194-27331213 | Msa1099040:CDS | 30.0% | |
| !! | TAGAATTGATGATGCAAATC+TGG | + | chr7_3:27331361-27331380 | Msa1099040:intron | 30.0% |
| ATATGAAATCAAGCTTCCAT+TGG | + | chr7_3:27331457-27331476 | Msa1099040:CDS | 30.0% | |
| GGAACAATTTCACGTTAAAT+TGG | + | chr7_3:27331484-27331503 | Msa1099040:CDS | 30.0% | |
| AGAACATTGTGACGTCAAAA+AGG | + | chr7_3:27330387-27330406 | Msa1099040:CDS | 35.0% | |
| AAGGGATTATTTGAAGGTCA+TGG | + | chr7_3:27330650-27330669 | Msa1099040:CDS | 35.0% | |
| AGCTTGATTTCAAATCCATC+AGG | - | chr7_3:27330707-27330726 | None:intergenic | 35.0% | |
| TGAAATCAAGCTTCTATCTG+AGG | + | chr7_3:27330715-27330734 | Msa1099040:CDS | 35.0% | |
| AGCTTGATTTCAAATCCATC+GGG | - | chr7_3:27330707-27330726 | None:intergenic | 35.0% | |
| TGAAGGATTACAAGAGACAA+AGG | + | chr7_3:27331211-27331230 | Msa1099040:CDS | 35.0% | |
| TTAAACTACTTCCTACCTGA+TGG | + | chr7_3:27331434-27331453 | Msa1099040:CDS | 35.0% | |
| TGATTTCATATCCATCAGGT+AGG | - | chr7_3:27331448-27331467 | None:intergenic | 35.0% | |
| AGCTTGATTTCATATCCATC+AGG | - | chr7_3:27331452-27331471 | None:intergenic | 35.0% | |
| AGAACATTGTGACGTCAAAA+AGG | + | chr7_3:27330387-27330406 | Msa1099040:CDS | 35.0% | |
| AAGGGATTATTTGAAGGTCA+TGG | + | chr7_3:27330650-27330669 | Msa1099040:CDS | 35.0% | |
| AGCTTGATTTCAAATCCATC+AGG | - | chr7_3:27330707-27330726 | None:intergenic | 35.0% | |
| TGAAATCAAGCTTCTATCTG+AGG | + | chr7_3:27330715-27330734 | Msa1099040:CDS | 35.0% | |
| AGCTTGATTTCAAATCCATC+GGG | - | chr7_3:27330707-27330726 | None:intergenic | 35.0% | |
| TGAAGGATTACAAGAGACAA+AGG | + | chr7_3:27331211-27331230 | Msa1099040:CDS | 35.0% | |
| TTAAACTACTTCCTACCTGA+TGG | + | chr7_3:27331434-27331453 | Msa1099040:CDS | 35.0% | |
| TGATTTCATATCCATCAGGT+AGG | - | chr7_3:27331448-27331467 | None:intergenic | 35.0% | |
| AGCTTGATTTCATATCCATC+AGG | - | chr7_3:27331452-27331471 | None:intergenic | 35.0% | |
| TTGAACTACTTCATGCCTGA+TGG | + | chr7_3:27330689-27330708 | Msa1099040:CDS | 40.0% | |
| AATCAAGCTTCTATCTGAGG+AGG | + | chr7_3:27330718-27330737 | Msa1099040:CDS | 40.0% | |
| TGAAATCAAGCTTCCATTGG+AGG | + | chr7_3:27331460-27331479 | Msa1099040:CDS | 40.0% | |
| TGAAATTGTTCCTCCTCCAA+TGG | - | chr7_3:27331476-27331495 | None:intergenic | 40.0% | |
| TTGAACTACTTCATGCCTGA+TGG | + | chr7_3:27330689-27330708 | Msa1099040:CDS | 40.0% | |
| AATCAAGCTTCTATCTGAGG+AGG | + | chr7_3:27330718-27330737 | Msa1099040:CDS | 40.0% | |
| TGAAATCAAGCTTCCATTGG+AGG | + | chr7_3:27331460-27331479 | Msa1099040:CDS | 40.0% | |
| TGAAATTGTTCCTCCTCCAA+TGG | - | chr7_3:27331476-27331495 | None:intergenic | 40.0% | |
| TTGTGACGTCAAAAAGGCCA+AGG | + | chr7_3:27330393-27330412 | Msa1099040:CDS | 45.0% | |
| ATCTGAGGAGGAACAATCTC+TGG | + | chr7_3:27330730-27330749 | Msa1099040:CDS | 45.0% | |
| TTGAACTACTTCATGCCCGA+TGG | + | chr7_3:27331045-27331064 | Msa1099040:CDS | 45.0% | |
| TGAAATCAAGCTTCCATCGG+AGG | + | chr7_3:27331071-27331090 | Msa1099040:CDS | 45.0% | |
| AATCAAGCTTCCATTGGAGG+AGG | + | chr7_3:27331463-27331482 | Msa1099040:CDS | 45.0% | |
| TTGTGACGTCAAAAAGGCCA+AGG | + | chr7_3:27330393-27330412 | Msa1099040:CDS | 45.0% | |
| ATCTGAGGAGGAACAATCTC+TGG | + | chr7_3:27330730-27330749 | Msa1099040:CDS | 45.0% | |
| TTGAACTACTTCATGCCCGA+TGG | + | chr7_3:27331045-27331064 | Msa1099040:CDS | 45.0% | |
| TGAAATCAAGCTTCCATCGG+AGG | + | chr7_3:27331071-27331090 | Msa1099040:CDS | 45.0% | |
| AATCAAGCTTCCATTGGAGG+AGG | + | chr7_3:27331463-27331482 | Msa1099040:CDS | 45.0% | |
| !!! | ATTTTTTTATTATATTTTGT+AGG | + | chr7_3:27330953-27330972 | Msa1099040:intron | 5.0% |
| !!! | TTTATTTTTAAATAATGAAA+TGG | + | chr7_3:27331282-27331301 | Msa1099040:intron | 5.0% |
| !!! | ATTTTTTTATTATATTTTGT+AGG | + | chr7_3:27330953-27330972 | Msa1099040:intron | 5.0% |
| !!! | TTTATTTTTAAATAATGAAA+TGG | + | chr7_3:27331282-27331301 | Msa1099040:intron | 5.0% |
| AGGATTGACGCTGCGAATCT+TGG | + | chr7_3:27330973-27330992 | Msa1099040:intron | 50.0% | |
| AATCAAGCTTCCATCGGAGG+AGG | + | chr7_3:27331074-27331093 | Msa1099040:CDS | 50.0% | |
| AGAGATTCTTCCTCCTCCGA+TGG | - | chr7_3:27331087-27331106 | None:intergenic | 50.0% | |
| AGGATTGACGCTGCGAATCT+TGG | + | chr7_3:27330973-27330992 | Msa1099040:intron | 50.0% | |
| AATCAAGCTTCCATCGGAGG+AGG | + | chr7_3:27331074-27331093 | Msa1099040:CDS | 50.0% | |
| AGAGATTCTTCCTCCTCCGA+TGG | - | chr7_3:27331087-27331106 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 27330370 | 27331526 | 27330370 | ID=Msa1099040;Name=Msa1099040 |
| chr7_3 | mRNA | 27330370 | 27331526 | 27330370 | ID=Msa1099040-mRNA-1;Parent=Msa1099040;Name=Msa1099040-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|4|0|273 |
| chr7_3 | exon | 27330370 | 27330512 | 27330370 | ID=Msa1099040-mRNA-1:exon:5776;Parent=Msa1099040-mRNA-1 |
| chr7_3 | exon | 27330619 | 27330876 | 27330619 | ID=Msa1099040-mRNA-1:exon:5777;Parent=Msa1099040-mRNA-1 |
| chr7_3 | exon | 27330975 | 27331232 | 27330975 | ID=Msa1099040-mRNA-1:exon:5778;Parent=Msa1099040-mRNA-1 |
| chr7_3 | exon | 27331364 | 27331526 | 27331364 | ID=Msa1099040-mRNA-1:exon:5779;Parent=Msa1099040-mRNA-1 |
| chr7_3 | CDS | 27330370 | 27330512 | 27330370 | ID=Msa1099040-mRNA-1:cds;Parent=Msa1099040-mRNA-1 |
| chr7_3 | CDS | 27330619 | 27330876 | 27330619 | ID=Msa1099040-mRNA-1:cds;Parent=Msa1099040-mRNA-1 |
| chr7_3 | CDS | 27330975 | 27331232 | 27330975 | ID=Msa1099040-mRNA-1:cds;Parent=Msa1099040-mRNA-1 |
| chr7_3 | CDS | 27331364 | 27331526 | 27331364 | ID=Msa1099040-mRNA-1:cds;Parent=Msa1099040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
