AlfalfaGEDB | Msa1099040

M. sativa cultivar zhongmu-4 / Msa1099040

KEGG: K07560|K11644
GO: GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009653 GO:0009791 GO:0009887 GO:0009987 GO:0022414 GO:0030154 GO:0030539 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0061458 GO:0090596 GO:0090597 GO:0090598
PFAM: PF02257.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1099040	XP_024626129.1	83.150	273	46	0	1	273	1	273	5.28e-154	440

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1099040	sp\|Q9LFQ3\|SNL2_ARATH	38.608	158	93	3	93	250	46	199	3.58e-21	96.7
Msa1099040	sp\|Q9LFQ3\|SNL2_ARATH	36.601	153	93	3	14	166	53	201	3.04e-17	85.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1099040	A0A396GZV2	83.150	273	46	0	1	273	1	273	2.52e-154	440

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TFs/TRs:

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Gene ID	Type	Classification
Msa1099040	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1099040	MtrunA17_Chr7g0218891	83.150	273	46	0	1	273	1	273	4.85e-158	440
Msa1099040	MtrunA17_Chr4g0075861	34.188	234	145	4	26	259	20	244	1.89e-33	125
Msa1099040	MtrunA17_Chr4g0075861	35.673	171	101	5	5	173	81	244	3.16e-19	86.3
Msa1099040	MtrunA17_Chr4g0075971	33.761	234	146	4	26	259	20	244	8.94e-31	120
Msa1099040	MtrunA17_Chr4g0075971	36.257	171	100	5	5	173	81	244	1.93e-18	84.7
Msa1099040	MtrunA17_Chr3g0077891	39.521	167	93	3	99	259	8	172	6.88e-28	105
Msa1099040	MtrunA17_Chr3g0077891	37.952	166	95	3	9	168	4	167	3.70e-25	98.6
Msa1099040	MtrunA17_Chr1g0206771	41.935	155	81	3	100	254	17	162	1.70e-26	102
Msa1099040	MtrunA17_Chr1g0206771	38.462	156	85	4	14	168	17	162	5.03e-22	90.5
Msa1099040	MtrunA17_Chr3g0077941	37.952	166	96	3	99	259	8	171	2.89e-24	96.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1099040	AT5G15020.2	38.608	158	93	3	93	250	46	199	3.53e-22	96.7
Msa1099040	AT5G15020.2	36.601	153	93	3	14	166	53	201	3.06e-18	85.1
Msa1099040	AT5G15020.1	38.608	158	93	3	93	250	46	199	3.64e-22	96.7
Msa1099040	AT5G15020.1	36.601	153	93	3	14	166	53	201	3.09e-18	85.1
Msa1099040	AT1G24190.2	37.654	162	95	5	91	250	6	163	6.20e-22	95.9
Msa1099040	AT1G24190.2	35.260	173	105	6	3	172	4	172	1.49e-19	89.0
Msa1099040	AT1G24190.2	45.455	66	36	0	201	266	28	93	6.40e-11	63.2
Msa1099040	AT1G24190.1	37.654	162	95	5	91	250	6	163	6.45e-22	95.9
Msa1099040	AT1G24190.1	35.260	173	105	6	3	172	4	172	1.59e-19	88.6
Msa1099040	AT1G24190.1	41.975	81	45	1	186	266	15	93	6.23e-11	63.2

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Find 47 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTCAGTAAATTCTTGA+AGG	0.490603	7_3:+27330631	Msa1099040:CDS
AACATCATTGACAAATTCTT+TGG	0.313079	7_3:-27331130	None:intergenic
AACTTCATTGACAAATTCCT+TGG	0.417950	7_3:-27330410	None:intergenic
AAGCTTGATTTCAAATCCAT+CGG	0.533316	7_3:-27331061	None:intergenic
AAGGGATTATTTGAAGGTCA+TGG	0.456386	7_3:+27330650	Msa1099040:CDS
AATCAAGCTTCCATCGGAGG+AGG	0.577026	7_3:+27331074	Msa1099040:CDS
AATCAAGCTTCCATTGGAGG+AGG	0.611644	7_3:+27331463	Msa1099040:CDS
AATCAAGCTTCTATCTGAGG+AGG	0.631110	7_3:+27330718	Msa1099040:CDS
AATCTCAGTAAATTCTTGAA+GGG	0.520509	7_3:+27330632	Msa1099040:CDS
AATCTTGGTGAATTATTGAA+GGG	0.514858	7_3:+27330988	Msa1099040:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTTCATTGACAAATTCCT+TGG	-	chr7_3:27330413-27330432	None:intergenic	30.0%
TGATGCATTACAAGAAACAA+AGG	+	chr7_3:27330491-27330510	Msa1099040:CDS	30.0%
TTCTTGAAGGGATTATTTGA+AGG	+	chr7_3:27330644-27330663	Msa1099040:CDS	30.0%
GATTTATTCAAGCTAATCAG+AGG	+	chr7_3:27330804-27330823	Msa1099040:CDS	30.0%
TAACTTTCTGAATGTCTTGA+AGG	+	chr7_3:27330838-27330857	Msa1099040:CDS	30.0%
TGAAGGATTACAAAACACAA+AGG	+	chr7_3:27330855-27330874	Msa1099040:CDS	30.0%
GAATCTTGGTGAATTATTGA+AGG	+	chr7_3:27330987-27331006	Msa1099040:CDS	30.0%
AAGCTTGATTTCAAATCCAT+CGG	-	chr7_3:27330708-27330727	None:intergenic	30.0%
TAACTTTCTGAATGTGTTGA+AGG	+	chr7_3:27331194-27331213	Msa1099040:CDS	30.0%
ATATGAAATCAAGCTTCCAT+TGG	+	chr7_3:27331457-27331476	Msa1099040:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	27330370	27331526	27330370	ID=Msa1099040;Name=Msa1099040
chr7_3	mRNA	27330370	27331526	27330370	ID=Msa1099040-mRNA-1;Parent=Msa1099040;Name=Msa1099040-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0\|0\|1\|1\|1\|4\|0\|273
chr7_3	exon	27330370	27330512	27330370	ID=Msa1099040-mRNA-1:exon:5776;Parent=Msa1099040-mRNA-1
chr7_3	exon	27330619	27330876	27330619	ID=Msa1099040-mRNA-1:exon:5777;Parent=Msa1099040-mRNA-1
chr7_3	exon	27330975	27331232	27330975	ID=Msa1099040-mRNA-1:exon:5778;Parent=Msa1099040-mRNA-1
chr7_3	exon	27331364	27331526	27331364	ID=Msa1099040-mRNA-1:exon:5779;Parent=Msa1099040-mRNA-1
chr7_3	CDS	27330370	27330512	27330370	ID=Msa1099040-mRNA-1:cds;Parent=Msa1099040-mRNA-1
chr7_3	CDS	27330619	27330876	27330619	ID=Msa1099040-mRNA-1:cds;Parent=Msa1099040-mRNA-1
chr7_3	CDS	27330975	27331232	27330975	ID=Msa1099040-mRNA-1:cds;Parent=Msa1099040-mRNA-1
chr7_3	CDS	27331364	27331526	27331364	ID=Msa1099040-mRNA-1:cds;Parent=Msa1099040-mRNA-1

Gene Sequence

>Msa1099040

ATGGAAGGACATTCTCAAGAACATTGTGACGTCAAAAAGGCCAAGGAATTTGTCAATGAAGTTAAGCATAGATTTATTCAAGTTAACAGGAGGGATAAGTATGATGACTTTTTGAATGTCTTGATGCATTACAAGAAACAAAGGATCGATGATGCAAATCTCAGTAAATTCTTGAAGGGATTATTTGAAGGTCATGGAGATCTTATATCAAGATTGAACTACTTCATGCCTGATGGATTTGAAATCAAGCTTCTATCTGAGGAGGAACAATCTCTGGAGCATTTTGTAGCCAAAAATGCGAAAGAATTTGTCAATGATGTTAAGTGTAGATTTATTCAAGCTAATCAGAGGGATAAGTATGATAACTTTCTGAATGTCTTGAAGGATTACAAAACACAAAGGATTGACGCTGCGAATCTTGGTGAATTATTGAAGGGATTATTTCAAGGTCATAGAGACCTTATATCAAGATTGAACTACTTCATGCCCGATGGATTTGAAATCAAGCTTCCATCGGAGGAGGAAGAATCTCTTGAACATTCTGAAGAAAAAACTGCCAAAGAATTTGTCAATGATGTTAAGTGTAGATTTATTCAAGTTAATCAGAGGGAAAAGTATGTTAACTTTCTGAATGTGTTGAAGGATTACAAGAGACAAAGAATTGATGATGCAAATCTGGTTAAAATAATGAAGAAAATATTTGAAGGTCATAGCGATTTAATATCAAGATTAAACTACTTCCTACCTGATGGATATGAAATCAAGCTTCCATTGGAGGAGGAACAATTTCACGTTAAATTGGAAGATGCTACAAGTTCTTGA

Protein sequence

>Msa1099040

MEGHSQEHCDVKKAKEFVNEVKHRFIQVNRRDKYDDFLNVLMHYKKQRIDDANLSKFLKGLFEGHGDLISRLNYFMPDGFEIKLLSEEEQSLEHFVAKNAKEFVNDVKCRFIQANQRDKYDNFLNVLKDYKTQRIDAANLGELLKGLFQGHRDLISRLNYFMPDGFEIKLPSEEEESLEHSEEKTAKEFVNDVKCRFIQVNQREKYVNFLNVLKDYKRQRIDDANLVKIMKKIFEGHSDLISRLNYFLPDGYEIKLPLEEEQFHVKLEDATSS*