Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099540 | XP_004489425.1 | 39.660 | 353 | 137 | 7 | 7 | 299 | 107 | 443 | 2.34e-64 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099540 | sp|Q38997|KIN10_ARATH | 37.059 | 340 | 137 | 6 | 7 | 286 | 108 | 430 | 6.63e-60 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099540 | A0A1S2XHG3 | 39.660 | 353 | 137 | 7 | 7 | 299 | 107 | 443 | 1.12e-64 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099540 | MtrunA17_Chr6g0453681 | 38.710 | 372 | 140 | 7 | 7 | 306 | 108 | 463 | 1.55e-67 | 218 |
| Msa1099540 | MtrunA17_Chr6g0468751 | 39.489 | 352 | 137 | 6 | 7 | 298 | 108 | 443 | 2.67e-66 | 216 |
| Msa1099540 | MtrunA17_Chr3g0132671 | 34.758 | 351 | 143 | 8 | 19 | 306 | 154 | 481 | 1.80e-54 | 184 |
| Msa1099540 | MtrunA17_Chr7g0218511 | 90.196 | 51 | 5 | 0 | 29 | 79 | 28 | 78 | 5.56e-28 | 103 |
| Msa1099540 | MtrunA17_Chr6g0453671 | 34.524 | 168 | 65 | 3 | 16 | 147 | 121 | 279 | 6.58e-24 | 100 |
| Msa1099540 | MtrunA17_Chr4g0069301 | 29.213 | 178 | 78 | 6 | 5 | 139 | 109 | 281 | 5.76e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099540 | AT3G01090.3 | 37.059 | 340 | 137 | 6 | 7 | 286 | 108 | 430 | 6.74e-61 | 202 |
| Msa1099540 | AT3G01090.1 | 37.059 | 340 | 137 | 6 | 7 | 286 | 108 | 430 | 6.74e-61 | 202 |
| Msa1099540 | AT3G01090.2 | 37.059 | 340 | 137 | 6 | 7 | 286 | 131 | 453 | 1.08e-60 | 202 |
| Msa1099540 | AT3G29160.1 | 37.059 | 340 | 138 | 8 | 7 | 286 | 109 | 432 | 1.27e-58 | 196 |
| Msa1099540 | AT3G29160.2 | 37.059 | 340 | 138 | 8 | 7 | 286 | 109 | 432 | 1.27e-58 | 196 |
| Msa1099540 | AT5G39440.1 | 31.233 | 365 | 147 | 13 | 17 | 306 | 122 | 457 | 2.09e-43 | 155 |
| Msa1099540 | AT3G29160.3 | 36.287 | 237 | 99 | 3 | 7 | 207 | 109 | 329 | 1.00e-40 | 145 |
| Msa1099540 | AT4G24400.2 | 32.500 | 160 | 76 | 3 | 30 | 157 | 121 | 280 | 4.76e-17 | 81.3 |
| Msa1099540 | AT4G24400.1 | 32.500 | 160 | 76 | 3 | 30 | 157 | 121 | 280 | 7.54e-17 | 80.9 |
| Msa1099540 | AT2G30360.1 | 29.193 | 161 | 71 | 5 | 31 | 156 | 135 | 287 | 6.46e-14 | 72.0 |
| Msa1099540 | AT1G48260.2 | 28.889 | 180 | 80 | 6 | 6 | 142 | 10 | 184 | 4.27e-13 | 69.3 |
| Msa1099540 | AT1G48260.4 | 28.889 | 180 | 80 | 6 | 6 | 142 | 10 | 184 | 4.27e-13 | 69.3 |
| Msa1099540 | AT1G48260.3 | 28.889 | 180 | 80 | 6 | 6 | 142 | 10 | 184 | 4.27e-13 | 69.3 |
| Msa1099540 | AT1G48260.5 | 28.889 | 180 | 80 | 6 | 6 | 142 | 10 | 184 | 4.27e-13 | 69.3 |
| Msa1099540 | AT1G48260.1 | 28.889 | 180 | 80 | 6 | 6 | 142 | 95 | 269 | 5.04e-13 | 69.7 |
Find 78 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAATATGTTAGTTGAAAT+TGG | 0.146112 | 7_3:+28239843 | Msa1099540:CDS |
| GATATGACTGCTTAGGATTC+TGG | 0.190893 | 7_3:+28240371 | Msa1099540:intron |
| ATTAACACACAGTAGCAATT+TGG | 0.203142 | 7_3:-28239956 | None:intergenic |
| AAAGTGGTTCCTTGGGATTC+AGG | 0.253347 | 7_3:+28240466 | Msa1099540:CDS |
| GATCCCACTTATCAATTCTT+TGG | 0.257788 | 7_3:-28239606 | None:intergenic |
| CGGCCCTGTCGAAGTCTATT+TGG | 0.262696 | 7_3:-28239727 | None:intergenic |
| CTGTCTAGCTCTCCTGTTGT+AGG | 0.298606 | 7_3:-28240851 | None:intergenic |
| TGTACTCAAGTTTGAACTTC+AGG | 0.320489 | 7_3:+28240909 | Msa1099540:CDS |
| TTCGACAGGGCCGTGAGTTT+TGG | 0.323395 | 7_3:+28239737 | Msa1099540:CDS |
| CTTCCTAGTTATCTATCTTC+TGG | 0.338162 | 7_3:+28239581 | Msa1099540:CDS |
| ACAGTATATTCTCAGGTTTA+AGG | 0.339212 | 7_3:-28239047 | None:intergenic |
| AATGTGAAGCTAGCTGATTT+TGG | 0.355745 | 7_3:+28239084 | Msa1099540:CDS |
| TCTGGATACTGAGGACTTCC+AGG | 0.362421 | 7_3:-28239150 | None:intergenic |
| AGACAGGAGGTTAGCAATCT+TGG | 0.372676 | 7_3:+28240868 | Msa1099540:CDS |
| TTAACACACAGTAGCAATTT+GGG | 0.376413 | 7_3:-28239955 | None:intergenic |
| CGTCTTGTCTCCCTTCTCTA+AGG | 0.376692 | 7_3:-28239893 | None:intergenic |
| GGAAGAGGTCTTCAGAGCTC+TGG | 0.406444 | 7_3:+28240795 | Msa1099540:CDS |
| TTGAGGGAAAGTGGTTCCTT+GGG | 0.418024 | 7_3:+28240459 | Msa1099540:CDS |
| CTACAACAGGAGAGCTAGAC+AGG | 0.425890 | 7_3:+28240852 | Msa1099540:CDS |
| GTTGAGGGAAAGTGGTTCCT+TGG | 0.430433 | 7_3:+28240458 | Msa1099540:CDS |
| CATGTATGTTGGAAAAGAAT+TGG | 0.438083 | 7_3:+28240826 | Msa1099540:CDS |
| GATGTACAAACCTCAGGATC+TGG | 0.439271 | 7_3:-28239168 | None:intergenic |
| CAGTAAACGTATAGTACATT+TGG | 0.444981 | 7_3:+28239023 | Msa1099540:CDS |
| AAAGAATTGGTACCTACAAC+AGG | 0.481088 | 7_3:+28240839 | Msa1099540:CDS |
| AGGCAACGTTTCACAGTTGA+GGG | 0.483719 | 7_3:+28240443 | Msa1099540:CDS |
| CAACTTGACCGCAGGGGATA+CGG | 0.494446 | 7_3:-28240400 | None:intergenic |
| TTGAAAAGCAACTTGACCGC+AGG | 0.497136 | 7_3:-28240408 | None:intergenic |
| GGACCTTCCTCGTTACTTGG+TGG | 0.500239 | 7_3:+28239694 | Msa1099540:CDS |
| ACAGCCAAATAGACTTCGAC+AGG | 0.501694 | 7_3:+28239723 | Msa1099540:CDS |
| GACCTTCCTCGTTACTTGGT+GGG | 0.503408 | 7_3:+28239695 | Msa1099540:CDS |
| GAAGAGGTCTTCAGAGCTCT+GGG | 0.505745 | 7_3:+28240796 | Msa1099540:CDS |
| GCGTCCAACAGTATATTCTC+AGG | 0.527929 | 7_3:-28239054 | None:intergenic |
| GTTTCACAGTTGAGGGAAAG+TGG | 0.529100 | 7_3:+28240450 | Msa1099540:CDS |
| AAAGCATCCTTGGTTTGCTA+CGG | 0.531440 | 7_3:+28239673 | Msa1099540:CDS |
| ATTGATAAGTGGGATCCTTA+CGG | 0.535242 | 7_3:+28239613 | Msa1099540:CDS |
| CTAATAGAACTCCTTAGAGA+AGG | 0.535659 | 7_3:+28239882 | Msa1099540:CDS |
| TGCTCCTCCGTTAGACATGA+TGG | 0.537941 | 7_3:+28240774 | Msa1099540:CDS |
| TAAACCTGAGAATATACTGT+TGG | 0.550416 | 7_3:+28239050 | Msa1099540:CDS |
| ACTATAGATGTACAAACCTC+AGG | 0.551433 | 7_3:-28239174 | None:intergenic |
| TCCGTTAGACATGATGGAAG+AGG | 0.556295 | 7_3:+28240780 | Msa1099540:CDS |
| GCACCAGAAGATAGATAACT+AGG | 0.556831 | 7_3:-28239584 | None:intergenic |
| TATCGAGTGGAAGACAAACT+TGG | 0.558501 | 7_3:+28238563 | Msa1099540:CDS |
| TGGGAGAATTGCATGTATGT+TGG | 0.562798 | 7_3:+28240815 | Msa1099540:CDS |
| TCAACTGTGAAACGTTGCCT+CGG | 0.567411 | 7_3:-28240440 | None:intergenic |
| TCTTGGTGACCACGGCGGAA+TGG | 0.572413 | 7_3:+28240885 | Msa1099540:CDS |
| TAATAGAACTCCTTAGAGAA+GGG | 0.572492 | 7_3:+28239883 | Msa1099540:CDS |
| AAACTTGGTGAAGGTGTCGT+TGG | 0.572778 | 7_3:+28238578 | Msa1099540:CDS |
| CACACAGTAGCAATTTGGGC+AGG | 0.574673 | 7_3:-28239951 | None:intergenic |
| AGTATCTAAAGTGAAAATGA+AGG | 0.576702 | 7_3:-28239926 | None:intergenic |
| GGCGGTGTACATATCAAGAC+TGG | 0.577536 | 7_3:+28238599 | Msa1099540:CDS |
| GGTGCCAAAGAATTGATAAG+TGG | 0.578697 | 7_3:+28239602 | Msa1099540:CDS |
| CTTGGTGAAGGTGTCGTTGG+CGG | 0.581328 | 7_3:+28238581 | Msa1099540:CDS |
| ACCTCTTCCATCATGTCTAA+CGG | 0.585574 | 7_3:-28240781 | None:intergenic |
| CTATGCGAAATCATGCGTAA+TGG | 0.591763 | 7_3:+28239108 | Msa1099540:CDS |
| GAGGCAACGTTTCACAGTTG+AGG | 0.591899 | 7_3:+28240442 | Msa1099540:CDS |
| TGAAAAGCAACTTGACCGCA+GGG | 0.593261 | 7_3:-28240407 | None:intergenic |
| GTCACAGGAAAACTGTATGC+GGG | 0.595347 | 7_3:+28239339 | Msa1099540:CDS |
| AAAAGTAATACCAAAACTCA+CGG | 0.602607 | 7_3:-28239747 | None:intergenic |
| GTTAGCAATCTTGGTGACCA+CGG | 0.618829 | 7_3:+28240877 | Msa1099540:CDS |
| ACCTCAGGATCTGGATACTG+AGG | 0.620043 | 7_3:-28239159 | None:intergenic |
| GTGCCAAAGAATTGATAAGT+GGG | 0.627944 | 7_3:+28239603 | Msa1099540:CDS |
| GTGGAAGACAAACTTGGTGA+AGG | 0.634028 | 7_3:+28238569 | Msa1099540:CDS |
| AATATTGTACCTGAATCCCA+AGG | 0.642520 | 7_3:-28240475 | None:intergenic |
| TCCTCAGTATCCAGATCCTG+AGG | 0.644016 | 7_3:+28239158 | Msa1099540:CDS |
| GGAAGGTCCGTAGCAAACCA+AGG | 0.657930 | 7_3:-28239680 | None:intergenic |
| CATTACGCATGATTTCGCAT+AGG | 0.660361 | 7_3:-28239107 | None:intergenic |
| TGTCACAGGAAAACTGTATG+CGG | 0.666323 | 7_3:+28239338 | Msa1099540:CDS |
| TGCCCACCAAGTAACGAGGA+AGG | 0.667349 | 7_3:-28239697 | None:intergenic |
| TACTTGCCCACCAAGTAACG+AGG | 0.667858 | 7_3:-28239701 | None:intergenic |
| GATAAGTGGGATCCTTACGG+TGG | 0.678508 | 7_3:+28239616 | Msa1099540:CDS |
| GAAAAGCAACTTGACCGCAG+GGG | 0.680400 | 7_3:-28240406 | None:intergenic |
| GGTTTGAACCGTATCCCCTG+CGG | 0.683535 | 7_3:+28240392 | Msa1099540:CDS |
| TAGAGAAGGGAGACAAGACG+AGG | 0.699391 | 7_3:+28239896 | Msa1099540:CDS |
| CAACAGGAGAGCTAGACAGG+AGG | 0.711102 | 7_3:+28240855 | Msa1099540:CDS |
| CAGCCAAATAGACTTCGACA+GGG | 0.711342 | 7_3:+28239724 | Msa1099540:CDS |
| TCTTCCATCATGTCTAACGG+AGG | 0.724342 | 7_3:-28240778 | None:intergenic |
| TGAGTACAACCATTCCGCCG+TGG | 0.727258 | 7_3:-28240894 | None:intergenic |
| AGCAATCTTGGTGACCACGG+CGG | 0.732737 | 7_3:+28240880 | Msa1099540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAAAAATATTACTT+AGG | - | chr7_3:28238728-28238747 | None:intergenic | 10.0% |
| !!! | GATATTGATATTATTTTTAT+CGG | - | chr7_3:28239644-28239663 | None:intergenic | 10.0% |
| !! | GATAAAAATAATATCAATAT+CGG | + | chr7_3:28239643-28239662 | Msa1099540:CDS | 10.0% |
| !! | AAAGAAAAAAAATATTACTT+AGG | - | chr7_3:28238728-28238747 | None:intergenic | 10.0% |
| !!! | GATATTGATATTATTTTTAT+CGG | - | chr7_3:28239644-28239663 | None:intergenic | 10.0% |
| !! | GATAAAAATAATATCAATAT+CGG | + | chr7_3:28239643-28239662 | Msa1099540:CDS | 10.0% |
| !!! | TTTTGTCATTTGTTATATAT+AGG | + | chr7_3:28239544-28239563 | Msa1099540:intron | 15.0% |
| !! | CTAAATATATTCTAATAGTT+AGG | + | chr7_3:28240624-28240643 | Msa1099540:intron | 15.0% |
| !!! | TTTTGTCATTTGTTATATAT+AGG | + | chr7_3:28239544-28239563 | Msa1099540:intron | 15.0% |
| !! | CTAAATATATTCTAATAGTT+AGG | + | chr7_3:28240624-28240643 | Msa1099540:intron | 15.0% |
| !!! | TTCAATATTTTATAATCGCT+CGG | + | chr7_3:28238772-28238791 | Msa1099540:intron | 20.0% |
| !!! | TTTTGGTATTACTTTTGTTA+AGG | + | chr7_3:28239754-28239773 | Msa1099540:CDS | 20.0% |
| !!! | ATTTTGGTTAAAAACAAATC+GGG | - | chr7_3:28239795-28239814 | None:intergenic | 20.0% |
| !!! | GATTTTGGTTAAAAACAAAT+CGG | - | chr7_3:28239796-28239815 | None:intergenic | 20.0% |
| !!! | ATTTTTTACCATTGAAAATG+TGG | + | chr7_3:28240301-28240320 | Msa1099540:intron | 20.0% |
| !!! | TTTTTTACCATTGAAAATGT+GGG | + | chr7_3:28240302-28240321 | Msa1099540:intron | 20.0% |
| !!! | TTCAATATTTTATAATCGCT+CGG | + | chr7_3:28238772-28238791 | Msa1099540:intron | 20.0% |
| !!! | TTTTGGTATTACTTTTGTTA+AGG | + | chr7_3:28239754-28239773 | Msa1099540:CDS | 20.0% |
| !!! | ATTTTGGTTAAAAACAAATC+GGG | - | chr7_3:28239795-28239814 | None:intergenic | 20.0% |
| !!! | GATTTTGGTTAAAAACAAAT+CGG | - | chr7_3:28239796-28239815 | None:intergenic | 20.0% |
| !!! | ATTTTTTACCATTGAAAATG+TGG | + | chr7_3:28240301-28240320 | Msa1099540:intron | 20.0% |
| !!! | TTTTTTACCATTGAAAATGT+GGG | + | chr7_3:28240302-28240321 | Msa1099540:intron | 20.0% |
| !!! | TTTGTTTTCGACAAACTATA+TGG | - | chr7_3:28238636-28238655 | None:intergenic | 25.0% |
| !! | TCAATATTTTATAATCGCTC+GGG | + | chr7_3:28238773-28238792 | Msa1099540:intron | 25.0% |
| !! | TATTTTCTTCAGAAAATTCC+TGG | + | chr7_3:28239132-28239151 | Msa1099540:CDS | 25.0% |
| !!! | TTTGTTTTTGTGAGTTTGTA+AGG | + | chr7_3:28239487-28239506 | Msa1099540:intron | 25.0% |
| ! | AAAAGTAATACCAAAACTCA+CGG | - | chr7_3:28239750-28239769 | None:intergenic | 25.0% |
| !! | TGATTTTCCAGATTGATAAA+GGG | + | chr7_3:28239817-28239836 | Msa1099540:intron | 25.0% |
| ! | CTGAATATGTTAGTTGAAAT+TGG | + | chr7_3:28239843-28239862 | Msa1099540:CDS | 25.0% |
| !! | AGTATCTAAAGTGAAAATGA+AGG | - | chr7_3:28239929-28239948 | None:intergenic | 25.0% |
| ! | AATCACTTCATCAAATAAAG+CGG | - | chr7_3:28240101-28240120 | None:intergenic | 25.0% |
| !! | GTTTTCTATTCTTGATACTA+TGG | + | chr7_3:28240324-28240343 | Msa1099540:intron | 25.0% |
| !! | TATGGAAAGCTCATTAATTT+TGG | + | chr7_3:28240342-28240361 | Msa1099540:intron | 25.0% |
| ! | ATTTATATACAAACCTGTCT+TGG | + | chr7_3:28240543-28240562 | Msa1099540:intron | 25.0% |
| ! | TTCTATATTTAGCAATAGCT+TGG | - | chr7_3:28240596-28240615 | None:intergenic | 25.0% |
| !!! | TTTGTTTTCGACAAACTATA+TGG | - | chr7_3:28238636-28238655 | None:intergenic | 25.0% |
| !! | TCAATATTTTATAATCGCTC+GGG | + | chr7_3:28238773-28238792 | Msa1099540:intron | 25.0% |
| !! | TATTTTCTTCAGAAAATTCC+TGG | + | chr7_3:28239132-28239151 | Msa1099540:CDS | 25.0% |
| !!! | TTTGTTTTTGTGAGTTTGTA+AGG | + | chr7_3:28239487-28239506 | Msa1099540:intron | 25.0% |
| ! | AAAAGTAATACCAAAACTCA+CGG | - | chr7_3:28239750-28239769 | None:intergenic | 25.0% |
| !! | TGATTTTCCAGATTGATAAA+GGG | + | chr7_3:28239817-28239836 | Msa1099540:intron | 25.0% |
| ! | CTGAATATGTTAGTTGAAAT+TGG | + | chr7_3:28239843-28239862 | Msa1099540:CDS | 25.0% |
| !! | AGTATCTAAAGTGAAAATGA+AGG | - | chr7_3:28239929-28239948 | None:intergenic | 25.0% |
| ! | AATCACTTCATCAAATAAAG+CGG | - | chr7_3:28240101-28240120 | None:intergenic | 25.0% |
| !! | GTTTTCTATTCTTGATACTA+TGG | + | chr7_3:28240324-28240343 | Msa1099540:intron | 25.0% |
| !! | TATGGAAAGCTCATTAATTT+TGG | + | chr7_3:28240342-28240361 | Msa1099540:intron | 25.0% |
| ! | ATTTATATACAAACCTGTCT+TGG | + | chr7_3:28240543-28240562 | Msa1099540:intron | 25.0% |
| ! | TTCTATATTTAGCAATAGCT+TGG | - | chr7_3:28240596-28240615 | None:intergenic | 25.0% |
| ATATCTTGAAGTACATCAAG+AGG | + | chr7_3:28238875-28238894 | Msa1099540:intron | 30.0% | |
| !!! | AGCAAGAAATTTTTTTCAGC+AGG | + | chr7_3:28238921-28238940 | Msa1099540:intron | 30.0% |
| CAGTAAACGTATAGTACATT+TGG | + | chr7_3:28239023-28239042 | Msa1099540:CDS | 30.0% | |
| ACAGTATATTCTCAGGTTTA+AGG | - | chr7_3:28239050-28239069 | None:intergenic | 30.0% | |
| TAAACCTGAGAATATACTGT+TGG | + | chr7_3:28239050-28239069 | Msa1099540:CDS | 30.0% | |
| ! | AGAAGAGTATGAATCATAAG+AGG | - | chr7_3:28239307-28239326 | None:intergenic | 30.0% |
| !!! | TTCATACTCTTCTTTTTTGC+AGG | + | chr7_3:28239314-28239333 | Msa1099540:intron | 30.0% |
| AACAGACGAATTATGATGAT+TGG | - | chr7_3:28239525-28239544 | None:intergenic | 30.0% | |
| ! | TACTTTTGTTAAGGCACAAA+AGG | + | chr7_3:28239763-28239782 | Msa1099540:CDS | 30.0% |
| ! | AATCTGGAAAATCACGATTT+TGG | - | chr7_3:28239811-28239830 | None:intergenic | 30.0% |
| ! | GTGATTTTCCAGATTGATAA+AGG | + | chr7_3:28239816-28239835 | Msa1099540:intron | 30.0% |
| TAATAGAACTCCTTAGAGAA+GGG | + | chr7_3:28239883-28239902 | Msa1099540:CDS | 30.0% | |
| TTAACACACAGTAGCAATTT+GGG | - | chr7_3:28239958-28239977 | None:intergenic | 30.0% | |
| ATTAACACACAGTAGCAATT+TGG | - | chr7_3:28239959-28239978 | None:intergenic | 30.0% | |
| TCTTGAAGTTGAGTTTCAAA+AGG | + | chr7_3:28240019-28240038 | Msa1099540:intron | 30.0% | |
| TATCCTCTATAAACAGTATC+CGG | + | chr7_3:28240221-28240240 | Msa1099540:intron | 30.0% | |
| ! | TAGAAAACCCACATTTTCAA+TGG | - | chr7_3:28240312-28240331 | None:intergenic | 30.0% |
| ! | GTTTTATGATATGACTGCTT+AGG | + | chr7_3:28240364-28240383 | Msa1099540:intron | 30.0% |
| GATTATTCAATGAGAAGGAA+AGG | - | chr7_3:28240515-28240534 | None:intergenic | 30.0% | |
| CACATGATTATTCAATGAGA+AGG | - | chr7_3:28240520-28240539 | None:intergenic | 30.0% | |
| ! | GTTTTTCTTCATATCGAAAC+TGG | + | chr7_3:28240646-28240665 | Msa1099540:intron | 30.0% |
| CATGTATGTTGGAAAAGAAT+TGG | + | chr7_3:28240826-28240845 | Msa1099540:CDS | 30.0% | |
| ATATCTTGAAGTACATCAAG+AGG | + | chr7_3:28238875-28238894 | Msa1099540:intron | 30.0% | |
| !!! | AGCAAGAAATTTTTTTCAGC+AGG | + | chr7_3:28238921-28238940 | Msa1099540:intron | 30.0% |
| CAGTAAACGTATAGTACATT+TGG | + | chr7_3:28239023-28239042 | Msa1099540:CDS | 30.0% | |
| ACAGTATATTCTCAGGTTTA+AGG | - | chr7_3:28239050-28239069 | None:intergenic | 30.0% | |
| TAAACCTGAGAATATACTGT+TGG | + | chr7_3:28239050-28239069 | Msa1099540:CDS | 30.0% | |
| ! | AGAAGAGTATGAATCATAAG+AGG | - | chr7_3:28239307-28239326 | None:intergenic | 30.0% |
| !!! | TTCATACTCTTCTTTTTTGC+AGG | + | chr7_3:28239314-28239333 | Msa1099540:intron | 30.0% |
| AACAGACGAATTATGATGAT+TGG | - | chr7_3:28239525-28239544 | None:intergenic | 30.0% | |
| ! | TACTTTTGTTAAGGCACAAA+AGG | + | chr7_3:28239763-28239782 | Msa1099540:CDS | 30.0% |
| ! | AATCTGGAAAATCACGATTT+TGG | - | chr7_3:28239811-28239830 | None:intergenic | 30.0% |
| ! | GTGATTTTCCAGATTGATAA+AGG | + | chr7_3:28239816-28239835 | Msa1099540:intron | 30.0% |
| TAATAGAACTCCTTAGAGAA+GGG | + | chr7_3:28239883-28239902 | Msa1099540:CDS | 30.0% | |
| TTAACACACAGTAGCAATTT+GGG | - | chr7_3:28239958-28239977 | None:intergenic | 30.0% | |
| ATTAACACACAGTAGCAATT+TGG | - | chr7_3:28239959-28239978 | None:intergenic | 30.0% | |
| TCTTGAAGTTGAGTTTCAAA+AGG | + | chr7_3:28240019-28240038 | Msa1099540:intron | 30.0% | |
| TATCCTCTATAAACAGTATC+CGG | + | chr7_3:28240221-28240240 | Msa1099540:intron | 30.0% | |
| ! | TAGAAAACCCACATTTTCAA+TGG | - | chr7_3:28240312-28240331 | None:intergenic | 30.0% |
| ! | GTTTTATGATATGACTGCTT+AGG | + | chr7_3:28240364-28240383 | Msa1099540:intron | 30.0% |
| GATTATTCAATGAGAAGGAA+AGG | - | chr7_3:28240515-28240534 | None:intergenic | 30.0% | |
| CACATGATTATTCAATGAGA+AGG | - | chr7_3:28240520-28240539 | None:intergenic | 30.0% | |
| ! | GTTTTTCTTCATATCGAAAC+TGG | + | chr7_3:28240646-28240665 | Msa1099540:intron | 30.0% |
| CATGTATGTTGGAAAAGAAT+TGG | + | chr7_3:28240826-28240845 | Msa1099540:CDS | 30.0% | |
| ! | TAGTTTGTCGAAAACAAACG+TGG | + | chr7_3:28238638-28238657 | Msa1099540:intron | 35.0% |
| TATTTGGTATAACCTCGTAG+AGG | - | chr7_3:28238816-28238835 | None:intergenic | 35.0% | |
| TCTACGAGGTTATACCAAAT+AGG | + | chr7_3:28238815-28238834 | Msa1099540:intron | 35.0% | |
| CTACGAGGTTATACCAAATA+GGG | + | chr7_3:28238816-28238835 | Msa1099540:intron | 35.0% | |
| AAGTACATCAAGAGGAACAA+AGG | + | chr7_3:28238883-28238902 | Msa1099540:intron | 35.0% | |
| AGTACATCAAGAGGAACAAA+GGG | + | chr7_3:28238884-28238903 | Msa1099540:intron | 35.0% | |
| TTGTCAACTAACCTCTACTT+TGG | + | chr7_3:28238986-28239005 | Msa1099540:intron | 35.0% | |
| TGTCAACTAACCTCTACTTT+GGG | + | chr7_3:28238987-28239006 | Msa1099540:intron | 35.0% | |
| !! | AATGTGAAGCTAGCTGATTT+TGG | + | chr7_3:28239084-28239103 | Msa1099540:CDS | 35.0% |
| ACTATAGATGTACAAACCTC+AGG | - | chr7_3:28239177-28239196 | None:intergenic | 35.0% | |
| CTTTACTAGTTCGATGATCT+CGG | - | chr7_3:28239454-28239473 | None:intergenic | 35.0% | |
| CTTCCTAGTTATCTATCTTC+TGG | + | chr7_3:28239581-28239600 | Msa1099540:CDS | 35.0% | |
| GTGCCAAAGAATTGATAAGT+GGG | + | chr7_3:28239603-28239622 | Msa1099540:CDS | 35.0% | |
| GATCCCACTTATCAATTCTT+TGG | - | chr7_3:28239609-28239628 | None:intergenic | 35.0% | |
| ATTGATAAGTGGGATCCTTA+CGG | + | chr7_3:28239613-28239632 | Msa1099540:CDS | 35.0% | |
| TCAGAATCCCTTTATCAATC+TGG | - | chr7_3:28239827-28239846 | None:intergenic | 35.0% | |
| CTAATAGAACTCCTTAGAGA+AGG | + | chr7_3:28239882-28239901 | Msa1099540:CDS | 35.0% | |
| !!! | CAAGTTGCTTTTCAAAGAGT+AGG | + | chr7_3:28240416-28240435 | Msa1099540:CDS | 35.0% |
| AATATTGTACCTGAATCCCA+AGG | - | chr7_3:28240478-28240497 | None:intergenic | 35.0% | |
| AAAGAATTGGTACCTACAAC+AGG | + | chr7_3:28240839-28240858 | Msa1099540:CDS | 35.0% | |
| ! | TAGTTTGTCGAAAACAAACG+TGG | + | chr7_3:28238638-28238657 | Msa1099540:intron | 35.0% |
| TATTTGGTATAACCTCGTAG+AGG | - | chr7_3:28238816-28238835 | None:intergenic | 35.0% | |
| TCTACGAGGTTATACCAAAT+AGG | + | chr7_3:28238815-28238834 | Msa1099540:intron | 35.0% | |
| CTACGAGGTTATACCAAATA+GGG | + | chr7_3:28238816-28238835 | Msa1099540:intron | 35.0% | |
| AAGTACATCAAGAGGAACAA+AGG | + | chr7_3:28238883-28238902 | Msa1099540:intron | 35.0% | |
| AGTACATCAAGAGGAACAAA+GGG | + | chr7_3:28238884-28238903 | Msa1099540:intron | 35.0% | |
| TTGTCAACTAACCTCTACTT+TGG | + | chr7_3:28238986-28239005 | Msa1099540:intron | 35.0% | |
| TGTCAACTAACCTCTACTTT+GGG | + | chr7_3:28238987-28239006 | Msa1099540:intron | 35.0% | |
| !! | AATGTGAAGCTAGCTGATTT+TGG | + | chr7_3:28239084-28239103 | Msa1099540:CDS | 35.0% |
| ACTATAGATGTACAAACCTC+AGG | - | chr7_3:28239177-28239196 | None:intergenic | 35.0% | |
| CTTTACTAGTTCGATGATCT+CGG | - | chr7_3:28239454-28239473 | None:intergenic | 35.0% | |
| CTTCCTAGTTATCTATCTTC+TGG | + | chr7_3:28239581-28239600 | Msa1099540:CDS | 35.0% | |
| GTGCCAAAGAATTGATAAGT+GGG | + | chr7_3:28239603-28239622 | Msa1099540:CDS | 35.0% | |
| GATCCCACTTATCAATTCTT+TGG | - | chr7_3:28239609-28239628 | None:intergenic | 35.0% | |
| ATTGATAAGTGGGATCCTTA+CGG | + | chr7_3:28239613-28239632 | Msa1099540:CDS | 35.0% | |
| TCAGAATCCCTTTATCAATC+TGG | - | chr7_3:28239827-28239846 | None:intergenic | 35.0% | |
| CTAATAGAACTCCTTAGAGA+AGG | + | chr7_3:28239882-28239901 | Msa1099540:CDS | 35.0% | |
| !!! | CAAGTTGCTTTTCAAAGAGT+AGG | + | chr7_3:28240416-28240435 | Msa1099540:CDS | 35.0% |
| AATATTGTACCTGAATCCCA+AGG | - | chr7_3:28240478-28240497 | None:intergenic | 35.0% | |
| AAAGAATTGGTACCTACAAC+AGG | + | chr7_3:28240839-28240858 | Msa1099540:CDS | 35.0% | |
| !! | CATTTTTGAGCGTTATCGAG+TGG | + | chr7_3:28238550-28238569 | Msa1099540:CDS | 40.0% |
| TATCGAGTGGAAGACAAACT+TGG | + | chr7_3:28238563-28238582 | Msa1099540:CDS | 40.0% | |
| GAGGTTATACCAAATAGGGA+AGG | + | chr7_3:28238820-28238839 | Msa1099540:intron | 40.0% | |
| CATTACGCATGATTTCGCAT+AGG | - | chr7_3:28239110-28239129 | None:intergenic | 40.0% | |
| CTATGCGAAATCATGCGTAA+TGG | + | chr7_3:28239108-28239127 | Msa1099540:CDS | 40.0% | |
| !!! | TCTTTTTTGCAGGTTGTCAC+AGG | + | chr7_3:28239324-28239343 | Msa1099540:intron | 40.0% |
| TGTCACAGGAAAACTGTATG+CGG | + | chr7_3:28239338-28239357 | Msa1099540:CDS | 40.0% | |
| ! | CTATGTCAACAAGCTCCTTT+TGG | + | chr7_3:28239408-28239427 | Msa1099540:intron | 40.0% |
| TAGTTCGATGATCTCGGAAA+CGG | - | chr7_3:28239448-28239467 | None:intergenic | 40.0% | |
| CGAGATCATCGAACTAGTAA+AGG | + | chr7_3:28239452-28239471 | Msa1099540:intron | 40.0% | |
| GCACCAGAAGATAGATAACT+AGG | - | chr7_3:28239587-28239606 | None:intergenic | 40.0% | |
| GGTGCCAAAGAATTGATAAG+TGG | + | chr7_3:28239602-28239621 | Msa1099540:CDS | 40.0% | |
| ! | TTTTTATCGGATCCACCGTA+AGG | - | chr7_3:28239631-28239650 | None:intergenic | 40.0% |
| !! | CGGACATTAAAAAGCATCCT+TGG | + | chr7_3:28239663-28239682 | Msa1099540:CDS | 40.0% |
| !! | AAAGCATCCTTGGTTTGCTA+CGG | + | chr7_3:28239673-28239692 | Msa1099540:CDS | 40.0% |
| AGTTGAGTTTCAAAAGGCAG+TGG | + | chr7_3:28240025-28240044 | Msa1099540:intron | 40.0% | |
| ACTGCTGCATATTTCACATG+GGG | - | chr7_3:28240186-28240205 | None:intergenic | 40.0% | |
| GACTGCTGCATATTTCACAT+GGG | - | chr7_3:28240187-28240206 | None:intergenic | 40.0% | |
| AGACTGCTGCATATTTCACA+TGG | - | chr7_3:28240188-28240207 | None:intergenic | 40.0% | |
| CATCCGGATACTGTTTATAG+AGG | - | chr7_3:28240227-28240246 | None:intergenic | 40.0% | |
| CAAAGCACGATTTACTCATC+CGG | - | chr7_3:28240243-28240262 | None:intergenic | 40.0% | |
| GATATGACTGCTTAGGATTC+TGG | + | chr7_3:28240371-28240390 | Msa1099540:intron | 40.0% | |
| ! | AATAGCTTGGTAGCCAAGAT+AGG | - | chr7_3:28240583-28240602 | None:intergenic | 40.0% |
| TCATATCGAAACTGGATTCC+TGG | + | chr7_3:28240654-28240673 | Msa1099540:intron | 40.0% | |
| ACCTCTTCCATCATGTCTAA+CGG | - | chr7_3:28240784-28240803 | None:intergenic | 40.0% | |
| TGGGAGAATTGCATGTATGT+TGG | + | chr7_3:28240815-28240834 | Msa1099540:CDS | 40.0% | |
| !! | CATTTTTGAGCGTTATCGAG+TGG | + | chr7_3:28238550-28238569 | Msa1099540:CDS | 40.0% |
| TATCGAGTGGAAGACAAACT+TGG | + | chr7_3:28238563-28238582 | Msa1099540:CDS | 40.0% | |
| GAGGTTATACCAAATAGGGA+AGG | + | chr7_3:28238820-28238839 | Msa1099540:intron | 40.0% | |
| CATTACGCATGATTTCGCAT+AGG | - | chr7_3:28239110-28239129 | None:intergenic | 40.0% | |
| CTATGCGAAATCATGCGTAA+TGG | + | chr7_3:28239108-28239127 | Msa1099540:CDS | 40.0% | |
| !!! | TCTTTTTTGCAGGTTGTCAC+AGG | + | chr7_3:28239324-28239343 | Msa1099540:intron | 40.0% |
| TGTCACAGGAAAACTGTATG+CGG | + | chr7_3:28239338-28239357 | Msa1099540:CDS | 40.0% | |
| ! | CTATGTCAACAAGCTCCTTT+TGG | + | chr7_3:28239408-28239427 | Msa1099540:intron | 40.0% |
| TAGTTCGATGATCTCGGAAA+CGG | - | chr7_3:28239448-28239467 | None:intergenic | 40.0% | |
| CGAGATCATCGAACTAGTAA+AGG | + | chr7_3:28239452-28239471 | Msa1099540:intron | 40.0% | |
| GCACCAGAAGATAGATAACT+AGG | - | chr7_3:28239587-28239606 | None:intergenic | 40.0% | |
| GGTGCCAAAGAATTGATAAG+TGG | + | chr7_3:28239602-28239621 | Msa1099540:CDS | 40.0% | |
| ! | TTTTTATCGGATCCACCGTA+AGG | - | chr7_3:28239631-28239650 | None:intergenic | 40.0% |
| !! | CGGACATTAAAAAGCATCCT+TGG | + | chr7_3:28239663-28239682 | Msa1099540:CDS | 40.0% |
| !! | AAAGCATCCTTGGTTTGCTA+CGG | + | chr7_3:28239673-28239692 | Msa1099540:CDS | 40.0% |
| AGTTGAGTTTCAAAAGGCAG+TGG | + | chr7_3:28240025-28240044 | Msa1099540:intron | 40.0% | |
| ACTGCTGCATATTTCACATG+GGG | - | chr7_3:28240186-28240205 | None:intergenic | 40.0% | |
| GACTGCTGCATATTTCACAT+GGG | - | chr7_3:28240187-28240206 | None:intergenic | 40.0% | |
| AGACTGCTGCATATTTCACA+TGG | - | chr7_3:28240188-28240207 | None:intergenic | 40.0% | |
| CATCCGGATACTGTTTATAG+AGG | - | chr7_3:28240227-28240246 | None:intergenic | 40.0% | |
| CAAAGCACGATTTACTCATC+CGG | - | chr7_3:28240243-28240262 | None:intergenic | 40.0% | |
| GATATGACTGCTTAGGATTC+TGG | + | chr7_3:28240371-28240390 | Msa1099540:intron | 40.0% | |
| ! | AATAGCTTGGTAGCCAAGAT+AGG | - | chr7_3:28240583-28240602 | None:intergenic | 40.0% |
| TCATATCGAAACTGGATTCC+TGG | + | chr7_3:28240654-28240673 | Msa1099540:intron | 40.0% | |
| ACCTCTTCCATCATGTCTAA+CGG | - | chr7_3:28240784-28240803 | None:intergenic | 40.0% | |
| TGGGAGAATTGCATGTATGT+TGG | + | chr7_3:28240815-28240834 | Msa1099540:CDS | 40.0% | |
| ! | GTGGAAGACAAACTTGGTGA+AGG | + | chr7_3:28238569-28238588 | Msa1099540:CDS | 45.0% |
| !! | AAACTTGGTGAAGGTGTCGT+TGG | + | chr7_3:28238578-28238597 | Msa1099540:CDS | 45.0% |
| GCACAAATGCCTTCCCTATT+TGG | - | chr7_3:28238832-28238851 | None:intergenic | 45.0% | |
| GCGTCCAACAGTATATTCTC+AGG | - | chr7_3:28239057-28239076 | None:intergenic | 45.0% | |
| GATGTACAAACCTCAGGATC+TGG | - | chr7_3:28239171-28239190 | None:intergenic | 45.0% | |
| GTCACAGGAAAACTGTATGC+GGG | + | chr7_3:28239339-28239358 | Msa1099540:CDS | 45.0% | |
| !! | CAGCTCTAAACACCTACTTC+AGG | - | chr7_3:28239366-28239385 | None:intergenic | 45.0% |
| ! | GAAGTAGGTGTTTAGAGCTG+TGG | + | chr7_3:28239366-28239385 | Msa1099540:intron | 45.0% |
| ACAGCCAAATAGACTTCGAC+AGG | + | chr7_3:28239723-28239742 | Msa1099540:CDS | 45.0% | |
| CAGCCAAATAGACTTCGACA+GGG | + | chr7_3:28239724-28239743 | Msa1099540:CDS | 45.0% | |
| TCAAGATCGTCTTTGCGAAG+AGG | - | chr7_3:28240005-28240024 | None:intergenic | 45.0% | |
| TGAGTTTCAAAAGGCAGTGG+TGG | + | chr7_3:28240028-28240047 | Msa1099540:intron | 45.0% | |
| GAGTTTCAAAAGGCAGTGGT+GGG | + | chr7_3:28240029-28240048 | Msa1099540:intron | 45.0% | |
| TGAAAAGCAACTTGACCGCA+GGG | - | chr7_3:28240410-28240429 | None:intergenic | 45.0% | |
| TTGAAAAGCAACTTGACCGC+AGG | - | chr7_3:28240411-28240430 | None:intergenic | 45.0% | |
| ! | CTTTTCAAAGAGTAGGACCG+AGG | + | chr7_3:28240423-28240442 | Msa1099540:CDS | 45.0% |
| TCAACTGTGAAACGTTGCCT+CGG | - | chr7_3:28240443-28240462 | None:intergenic | 45.0% | |
| AGGCAACGTTTCACAGTTGA+GGG | + | chr7_3:28240443-28240462 | Msa1099540:CDS | 45.0% | |
| GTTTCACAGTTGAGGGAAAG+TGG | + | chr7_3:28240450-28240469 | Msa1099540:CDS | 45.0% | |
| TTGAGGGAAAGTGGTTCCTT+GGG | + | chr7_3:28240459-28240478 | Msa1099540:CDS | 45.0% | |
| AAAGTGGTTCCTTGGGATTC+AGG | + | chr7_3:28240466-28240485 | Msa1099540:CDS | 45.0% | |
| GACCAAGCTTAAGCCTATCT+TGG | + | chr7_3:28240567-28240586 | Msa1099540:intron | 45.0% | |
| AGCCAAGATAGGCTTAAGCT+TGG | - | chr7_3:28240572-28240591 | None:intergenic | 45.0% | |
| CGATTATGTCATCAACAGCC+AGG | - | chr7_3:28240675-28240694 | None:intergenic | 45.0% | |
| TCTTCCATCATGTCTAACGG+AGG | - | chr7_3:28240781-28240800 | None:intergenic | 45.0% | |
| ! | TCCGTTAGACATGATGGAAG+AGG | + | chr7_3:28240780-28240799 | Msa1099540:CDS | 45.0% |
| AGACAGGAGGTTAGCAATCT+TGG | + | chr7_3:28240868-28240887 | Msa1099540:CDS | 45.0% | |
| ! | GTTAGCAATCTTGGTGACCA+CGG | + | chr7_3:28240877-28240896 | Msa1099540:CDS | 45.0% |
| ! | GTGGAAGACAAACTTGGTGA+AGG | + | chr7_3:28238569-28238588 | Msa1099540:CDS | 45.0% |
| !! | AAACTTGGTGAAGGTGTCGT+TGG | + | chr7_3:28238578-28238597 | Msa1099540:CDS | 45.0% |
| GCACAAATGCCTTCCCTATT+TGG | - | chr7_3:28238832-28238851 | None:intergenic | 45.0% | |
| GCGTCCAACAGTATATTCTC+AGG | - | chr7_3:28239057-28239076 | None:intergenic | 45.0% | |
| GATGTACAAACCTCAGGATC+TGG | - | chr7_3:28239171-28239190 | None:intergenic | 45.0% | |
| GTCACAGGAAAACTGTATGC+GGG | + | chr7_3:28239339-28239358 | Msa1099540:CDS | 45.0% | |
| !! | CAGCTCTAAACACCTACTTC+AGG | - | chr7_3:28239366-28239385 | None:intergenic | 45.0% |
| ! | GAAGTAGGTGTTTAGAGCTG+TGG | + | chr7_3:28239366-28239385 | Msa1099540:intron | 45.0% |
| ACAGCCAAATAGACTTCGAC+AGG | + | chr7_3:28239723-28239742 | Msa1099540:CDS | 45.0% | |
| CAGCCAAATAGACTTCGACA+GGG | + | chr7_3:28239724-28239743 | Msa1099540:CDS | 45.0% | |
| TCAAGATCGTCTTTGCGAAG+AGG | - | chr7_3:28240005-28240024 | None:intergenic | 45.0% | |
| TGAGTTTCAAAAGGCAGTGG+TGG | + | chr7_3:28240028-28240047 | Msa1099540:intron | 45.0% | |
| GAGTTTCAAAAGGCAGTGGT+GGG | + | chr7_3:28240029-28240048 | Msa1099540:intron | 45.0% | |
| TGAAAAGCAACTTGACCGCA+GGG | - | chr7_3:28240410-28240429 | None:intergenic | 45.0% | |
| TTGAAAAGCAACTTGACCGC+AGG | - | chr7_3:28240411-28240430 | None:intergenic | 45.0% | |
| ! | CTTTTCAAAGAGTAGGACCG+AGG | + | chr7_3:28240423-28240442 | Msa1099540:CDS | 45.0% |
| TCAACTGTGAAACGTTGCCT+CGG | - | chr7_3:28240443-28240462 | None:intergenic | 45.0% | |
| AGGCAACGTTTCACAGTTGA+GGG | + | chr7_3:28240443-28240462 | Msa1099540:CDS | 45.0% | |
| GTTTCACAGTTGAGGGAAAG+TGG | + | chr7_3:28240450-28240469 | Msa1099540:CDS | 45.0% | |
| TTGAGGGAAAGTGGTTCCTT+GGG | + | chr7_3:28240459-28240478 | Msa1099540:CDS | 45.0% | |
| AAAGTGGTTCCTTGGGATTC+AGG | + | chr7_3:28240466-28240485 | Msa1099540:CDS | 45.0% | |
| GACCAAGCTTAAGCCTATCT+TGG | + | chr7_3:28240567-28240586 | Msa1099540:intron | 45.0% | |
| AGCCAAGATAGGCTTAAGCT+TGG | - | chr7_3:28240572-28240591 | None:intergenic | 45.0% | |
| CGATTATGTCATCAACAGCC+AGG | - | chr7_3:28240675-28240694 | None:intergenic | 45.0% | |
| TCTTCCATCATGTCTAACGG+AGG | - | chr7_3:28240781-28240800 | None:intergenic | 45.0% | |
| ! | TCCGTTAGACATGATGGAAG+AGG | + | chr7_3:28240780-28240799 | Msa1099540:CDS | 45.0% |
| AGACAGGAGGTTAGCAATCT+TGG | + | chr7_3:28240868-28240887 | Msa1099540:CDS | 45.0% | |
| ! | GTTAGCAATCTTGGTGACCA+CGG | + | chr7_3:28240877-28240896 | Msa1099540:CDS | 45.0% |
| GGCGGTGTACATATCAAGAC+TGG | + | chr7_3:28238599-28238618 | Msa1099540:CDS | 50.0% | |
| CCTCTACTTTGGGCAGAGTT+CGG | + | chr7_3:28238997-28239016 | Msa1099540:intron | 50.0% | |
| TCTGGATACTGAGGACTTCC+AGG | - | chr7_3:28239153-28239172 | None:intergenic | 50.0% | |
| TCCTCAGTATCCAGATCCTG+AGG | + | chr7_3:28239158-28239177 | Msa1099540:CDS | 50.0% | |
| ACCTCAGGATCTGGATACTG+AGG | - | chr7_3:28239162-28239181 | None:intergenic | 50.0% | |
| !! | GCTCCTTTTGGAGATCACGA+TGG | + | chr7_3:28239420-28239439 | Msa1099540:intron | 50.0% |
| GTGCCATCGTGATCTCCAAA+AGG | - | chr7_3:28239426-28239445 | None:intergenic | 50.0% | |
| GATAAGTGGGATCCTTACGG+TGG | + | chr7_3:28239616-28239635 | Msa1099540:CDS | 50.0% | |
| TACGGACCTTCCTCGTTACT+TGG | + | chr7_3:28239691-28239710 | Msa1099540:CDS | 50.0% | |
| GACCTTCCTCGTTACTTGGT+GGG | + | chr7_3:28239695-28239714 | Msa1099540:CDS | 50.0% | |
| TACTTGCCCACCAAGTAACG+AGG | - | chr7_3:28239704-28239723 | None:intergenic | 50.0% | |
| CGTCTTGTCTCCCTTCTCTA+AGG | - | chr7_3:28239896-28239915 | None:intergenic | 50.0% | |
| TAGAGAAGGGAGACAAGACG+AGG | + | chr7_3:28239896-28239915 | Msa1099540:CDS | 50.0% | |
| CACACAGTAGCAATTTGGGC+AGG | - | chr7_3:28239954-28239973 | None:intergenic | 50.0% | |
| CGTCTTTGCGAAGAGGAATG+TGG | - | chr7_3:28239998-28240017 | None:intergenic | 50.0% | |
| GAAAAGCAACTTGACCGCAG+GGG | - | chr7_3:28240409-28240428 | None:intergenic | 50.0% | |
| GAGGCAACGTTTCACAGTTG+AGG | + | chr7_3:28240442-28240461 | Msa1099540:CDS | 50.0% | |
| GTTGAGGGAAAGTGGTTCCT+TGG | + | chr7_3:28240458-28240477 | Msa1099540:CDS | 50.0% | |
| TTAAGCTTGGTCGCCAAGAC+AGG | - | chr7_3:28240559-28240578 | None:intergenic | 50.0% | |
| TGCTCCTCCGTTAGACATGA+TGG | + | chr7_3:28240774-28240793 | Msa1099540:CDS | 50.0% | |
| GAAGAGGTCTTCAGAGCTCT+GGG | + | chr7_3:28240796-28240815 | Msa1099540:CDS | 50.0% | |
| !! | CTGTCTAGCTCTCCTGTTGT+AGG | - | chr7_3:28240854-28240873 | None:intergenic | 50.0% |
| CTACAACAGGAGAGCTAGAC+AGG | + | chr7_3:28240852-28240871 | Msa1099540:CDS | 50.0% | |
| GGCGGTGTACATATCAAGAC+TGG | + | chr7_3:28238599-28238618 | Msa1099540:CDS | 50.0% | |
| CCTCTACTTTGGGCAGAGTT+CGG | + | chr7_3:28238997-28239016 | Msa1099540:intron | 50.0% | |
| TCTGGATACTGAGGACTTCC+AGG | - | chr7_3:28239153-28239172 | None:intergenic | 50.0% | |
| TCCTCAGTATCCAGATCCTG+AGG | + | chr7_3:28239158-28239177 | Msa1099540:CDS | 50.0% | |
| ACCTCAGGATCTGGATACTG+AGG | - | chr7_3:28239162-28239181 | None:intergenic | 50.0% | |
| !! | GCTCCTTTTGGAGATCACGA+TGG | + | chr7_3:28239420-28239439 | Msa1099540:intron | 50.0% |
| GTGCCATCGTGATCTCCAAA+AGG | - | chr7_3:28239426-28239445 | None:intergenic | 50.0% | |
| GATAAGTGGGATCCTTACGG+TGG | + | chr7_3:28239616-28239635 | Msa1099540:CDS | 50.0% | |
| TACGGACCTTCCTCGTTACT+TGG | + | chr7_3:28239691-28239710 | Msa1099540:CDS | 50.0% | |
| GACCTTCCTCGTTACTTGGT+GGG | + | chr7_3:28239695-28239714 | Msa1099540:CDS | 50.0% | |
| TACTTGCCCACCAAGTAACG+AGG | - | chr7_3:28239704-28239723 | None:intergenic | 50.0% | |
| CGTCTTGTCTCCCTTCTCTA+AGG | - | chr7_3:28239896-28239915 | None:intergenic | 50.0% | |
| TAGAGAAGGGAGACAAGACG+AGG | + | chr7_3:28239896-28239915 | Msa1099540:CDS | 50.0% | |
| CACACAGTAGCAATTTGGGC+AGG | - | chr7_3:28239954-28239973 | None:intergenic | 50.0% | |
| CGTCTTTGCGAAGAGGAATG+TGG | - | chr7_3:28239998-28240017 | None:intergenic | 50.0% | |
| GAAAAGCAACTTGACCGCAG+GGG | - | chr7_3:28240409-28240428 | None:intergenic | 50.0% | |
| GAGGCAACGTTTCACAGTTG+AGG | + | chr7_3:28240442-28240461 | Msa1099540:CDS | 50.0% | |
| GTTGAGGGAAAGTGGTTCCT+TGG | + | chr7_3:28240458-28240477 | Msa1099540:CDS | 50.0% | |
| TTAAGCTTGGTCGCCAAGAC+AGG | - | chr7_3:28240559-28240578 | None:intergenic | 50.0% | |
| TGCTCCTCCGTTAGACATGA+TGG | + | chr7_3:28240774-28240793 | Msa1099540:CDS | 50.0% | |
| GAAGAGGTCTTCAGAGCTCT+GGG | + | chr7_3:28240796-28240815 | Msa1099540:CDS | 50.0% | |
| !! | CTGTCTAGCTCTCCTGTTGT+AGG | - | chr7_3:28240854-28240873 | None:intergenic | 50.0% |
| CTACAACAGGAGAGCTAGAC+AGG | + | chr7_3:28240852-28240871 | Msa1099540:CDS | 50.0% | |
| !! | CTTGGTGAAGGTGTCGTTGG+CGG | + | chr7_3:28238581-28238600 | Msa1099540:CDS | 55.0% |
| TCACGTCATACGCCTCTACG+AGG | + | chr7_3:28238801-28238820 | Msa1099540:intron | 55.0% | |
| CCGAACTCTGCCCAAAGTAG+AGG | - | chr7_3:28239000-28239019 | None:intergenic | 55.0% | |
| CTGTATGCGGGACCTGAAGT+AGG | + | chr7_3:28239351-28239370 | Msa1099540:intron | 55.0% | |
| GGAAGGTCCGTAGCAAACCA+AGG | - | chr7_3:28239683-28239702 | None:intergenic | 55.0% | |
| GGACCTTCCTCGTTACTTGG+TGG | + | chr7_3:28239694-28239713 | Msa1099540:CDS | 55.0% | |
| TGCCCACCAAGTAACGAGGA+AGG | - | chr7_3:28239700-28239719 | None:intergenic | 55.0% | |
| CGGCCCTGTCGAAGTCTATT+TGG | - | chr7_3:28239730-28239749 | None:intergenic | 55.0% | |
| ! | TTCGACAGGGCCGTGAGTTT+TGG | + | chr7_3:28239737-28239756 | Msa1099540:CDS | 55.0% |
| GGTTTGAACCGTATCCCCTG+CGG | + | chr7_3:28240392-28240411 | Msa1099540:CDS | 55.0% | |
| CAACTTGACCGCAGGGGATA+CGG | - | chr7_3:28240403-28240422 | None:intergenic | 55.0% | |
| GGAAGAGGTCTTCAGAGCTC+TGG | + | chr7_3:28240795-28240814 | Msa1099540:CDS | 55.0% | |
| CAACAGGAGAGCTAGACAGG+AGG | + | chr7_3:28240855-28240874 | Msa1099540:CDS | 55.0% | |
| ! | AGCAATCTTGGTGACCACGG+CGG | + | chr7_3:28240880-28240899 | Msa1099540:CDS | 55.0% |
| TGAGTACAACCATTCCGCCG+TGG | - | chr7_3:28240897-28240916 | None:intergenic | 55.0% | |
| !! | CTTGGTGAAGGTGTCGTTGG+CGG | + | chr7_3:28238581-28238600 | Msa1099540:CDS | 55.0% |
| TCACGTCATACGCCTCTACG+AGG | + | chr7_3:28238801-28238820 | Msa1099540:intron | 55.0% | |
| CCGAACTCTGCCCAAAGTAG+AGG | - | chr7_3:28239000-28239019 | None:intergenic | 55.0% | |
| CTGTATGCGGGACCTGAAGT+AGG | + | chr7_3:28239351-28239370 | Msa1099540:intron | 55.0% | |
| GGAAGGTCCGTAGCAAACCA+AGG | - | chr7_3:28239683-28239702 | None:intergenic | 55.0% | |
| GGACCTTCCTCGTTACTTGG+TGG | + | chr7_3:28239694-28239713 | Msa1099540:CDS | 55.0% | |
| TGCCCACCAAGTAACGAGGA+AGG | - | chr7_3:28239700-28239719 | None:intergenic | 55.0% | |
| CGGCCCTGTCGAAGTCTATT+TGG | - | chr7_3:28239730-28239749 | None:intergenic | 55.0% | |
| ! | TTCGACAGGGCCGTGAGTTT+TGG | + | chr7_3:28239737-28239756 | Msa1099540:CDS | 55.0% |
| GGTTTGAACCGTATCCCCTG+CGG | + | chr7_3:28240392-28240411 | Msa1099540:CDS | 55.0% | |
| CAACTTGACCGCAGGGGATA+CGG | - | chr7_3:28240403-28240422 | None:intergenic | 55.0% | |
| GGAAGAGGTCTTCAGAGCTC+TGG | + | chr7_3:28240795-28240814 | Msa1099540:CDS | 55.0% | |
| CAACAGGAGAGCTAGACAGG+AGG | + | chr7_3:28240855-28240874 | Msa1099540:CDS | 55.0% | |
| ! | AGCAATCTTGGTGACCACGG+CGG | + | chr7_3:28240880-28240899 | Msa1099540:CDS | 55.0% |
| TGAGTACAACCATTCCGCCG+TGG | - | chr7_3:28240897-28240916 | None:intergenic | 55.0% | |
| ! | TCTTGGTGACCACGGCGGAA+TGG | + | chr7_3:28240885-28240904 | Msa1099540:CDS | 60.0% |
| ! | TCTTGGTGACCACGGCGGAA+TGG | + | chr7_3:28240885-28240904 | Msa1099540:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 28238533 | 28240930 | 28238533 | ID=Msa1099540;Name=Msa1099540 |
| chr7_3 | mRNA | 28238533 | 28240930 | 28238533 | ID=Msa1099540-mRNA-1;Parent=Msa1099540;Name=Msa1099540-mRNA-1;_AED=0.40;_eAED=0.41;_QI=0|0|0|0.71|0.5|0.71|7|0|306 |
| chr7_3 | exon | 28238533 | 28238620 | 28238533 | ID=Msa1099540-mRNA-1:exon:5926;Parent=Msa1099540-mRNA-1 |
| chr7_3 | exon | 28239013 | 28239194 | 28239013 | ID=Msa1099540-mRNA-1:exon:5927;Parent=Msa1099540-mRNA-1 |
| chr7_3 | exon | 28239336 | 28239368 | 28239336 | ID=Msa1099540-mRNA-1:exon:5928;Parent=Msa1099540-mRNA-1 |
| chr7_3 | exon | 28239575 | 28239784 | 28239575 | ID=Msa1099540-mRNA-1:exon:5929;Parent=Msa1099540-mRNA-1 |
| chr7_3 | exon | 28239828 | 28239968 | 28239828 | ID=Msa1099540-mRNA-1:exon:5930;Parent=Msa1099540-mRNA-1 |
| chr7_3 | exon | 28240386 | 28240487 | 28240386 | ID=Msa1099540-mRNA-1:exon:5931;Parent=Msa1099540-mRNA-1 |
| chr7_3 | exon | 28240769 | 28240930 | 28240769 | ID=Msa1099540-mRNA-1:exon:5932;Parent=Msa1099540-mRNA-1 |
| chr7_3 | CDS | 28238533 | 28238620 | 28238533 | ID=Msa1099540-mRNA-1:cds;Parent=Msa1099540-mRNA-1 |
| chr7_3 | CDS | 28239013 | 28239194 | 28239013 | ID=Msa1099540-mRNA-1:cds;Parent=Msa1099540-mRNA-1 |
| chr7_3 | CDS | 28239336 | 28239368 | 28239336 | ID=Msa1099540-mRNA-1:cds;Parent=Msa1099540-mRNA-1 |
| chr7_3 | CDS | 28239575 | 28239784 | 28239575 | ID=Msa1099540-mRNA-1:cds;Parent=Msa1099540-mRNA-1 |
| chr7_3 | CDS | 28239828 | 28239968 | 28239828 | ID=Msa1099540-mRNA-1:cds;Parent=Msa1099540-mRNA-1 |
| chr7_3 | CDS | 28240386 | 28240487 | 28240386 | ID=Msa1099540-mRNA-1:cds;Parent=Msa1099540-mRNA-1 |
| chr7_3 | CDS | 28240769 | 28240930 | 28240769 | ID=Msa1099540-mRNA-1:cds;Parent=Msa1099540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
