Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100430 | XP_003621170.1 | 95.956 | 272 | 11 | 0 | 1 | 272 | 1 | 272 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100430 | sp|Q8LAT0|ATB20_ARATH | 44.444 | 279 | 128 | 12 | 1 | 272 | 16 | 274 | 3.88e-63 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100430 | G7KZX6 | 95.956 | 272 | 11 | 0 | 1 | 272 | 1 | 272 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1100430 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100430 | MtrunA17_Chr7g0217111 | 95.956 | 272 | 11 | 0 | 1 | 272 | 1 | 272 | 0.0 | 541 |
| Msa1100430 | MtrunA17_Chr6g0453021 | 60.137 | 291 | 75 | 10 | 1 | 272 | 1 | 269 | 5.42e-106 | 308 |
| Msa1100430 | MtrunA17_Chr8g0362151 | 51.761 | 284 | 115 | 9 | 1 | 271 | 1 | 275 | 5.26e-76 | 233 |
| Msa1100430 | MtrunA17_Chr5g0416391 | 49.110 | 281 | 125 | 6 | 1 | 271 | 4 | 276 | 1.07e-69 | 216 |
| Msa1100430 | MtrunA17_Chr5g0415941 | 59.459 | 111 | 43 | 1 | 65 | 175 | 74 | 182 | 4.27e-33 | 123 |
| Msa1100430 | MtrunA17_Chr3g0119291 | 50.360 | 139 | 57 | 3 | 71 | 197 | 47 | 185 | 5.28e-33 | 121 |
| Msa1100430 | MtrunA17_Chr4g0060031 | 57.143 | 112 | 46 | 2 | 64 | 175 | 81 | 190 | 1.65e-31 | 119 |
| Msa1100430 | MtrunA17_Chr6g0450991 | 58.416 | 101 | 41 | 1 | 75 | 175 | 63 | 162 | 3.10e-30 | 114 |
| Msa1100430 | MtrunA17_Chr3g0123691 | 59.794 | 97 | 39 | 0 | 79 | 175 | 59 | 155 | 3.26e-30 | 115 |
| Msa1100430 | MtrunA17_Chr8g0381741 | 57.732 | 97 | 41 | 0 | 79 | 175 | 53 | 149 | 4.50e-29 | 112 |
| Msa1100430 | MtrunA17_Chr7g0265521 | 47.692 | 130 | 64 | 2 | 67 | 196 | 51 | 176 | 1.34e-28 | 108 |
| Msa1100430 | MtrunA17_Chr8g0362751 | 58.333 | 96 | 40 | 0 | 80 | 175 | 89 | 184 | 7.88e-27 | 105 |
| Msa1100430 | MtrunA17_Chr1g0179581 | 58.537 | 82 | 34 | 0 | 78 | 159 | 26 | 107 | 7.57e-25 | 95.5 |
| Msa1100430 | MtrunA17_Chr4g0055851 | 38.608 | 158 | 88 | 2 | 16 | 173 | 61 | 209 | 1.48e-23 | 96.7 |
| Msa1100430 | MtrunA17_Chr3g0127511 | 44.355 | 124 | 60 | 3 | 83 | 200 | 41 | 161 | 9.60e-22 | 91.3 |
| Msa1100430 | MtrunA17_Chr8g0346251 | 49.451 | 91 | 39 | 1 | 87 | 170 | 48 | 138 | 6.05e-21 | 89.0 |
| Msa1100430 | MtrunA17_Chr5g0399491 | 44.000 | 125 | 57 | 2 | 58 | 173 | 105 | 225 | 2.94e-20 | 88.2 |
| Msa1100430 | MtrunA17_Chr7g0258831 | 42.982 | 114 | 58 | 1 | 61 | 174 | 141 | 247 | 4.45e-20 | 87.4 |
| Msa1100430 | MtrunA17_Chr1g0175651 | 45.714 | 105 | 50 | 1 | 70 | 174 | 144 | 241 | 9.55e-20 | 86.7 |
| Msa1100430 | MtrunA17_Chr1g0151971 | 48.958 | 96 | 42 | 1 | 79 | 174 | 129 | 217 | 3.19e-19 | 85.1 |
| Msa1100430 | MtrunA17_Chr4g0054421 | 44.860 | 107 | 51 | 2 | 68 | 174 | 116 | 214 | 3.77e-19 | 84.7 |
| Msa1100430 | MtrunA17_Chr5g0400781 | 45.192 | 104 | 50 | 1 | 71 | 174 | 114 | 210 | 4.74e-19 | 84.3 |
| Msa1100430 | MtrunA17_Chr8g0335131 | 49.474 | 95 | 44 | 1 | 79 | 173 | 145 | 235 | 1.22e-18 | 84.0 |
| Msa1100430 | MtrunA17_Chr2g0308611 | 44.954 | 109 | 56 | 2 | 68 | 176 | 188 | 292 | 2.18e-18 | 83.6 |
| Msa1100430 | MtrunA17_Chr4g0071411 | 48.235 | 85 | 44 | 0 | 82 | 166 | 90 | 174 | 5.94e-18 | 80.5 |
| Msa1100430 | MtrunA17_Chr4g0044091 | 45.263 | 95 | 48 | 1 | 79 | 173 | 64 | 154 | 1.37e-16 | 76.3 |
| Msa1100430 | MtrunA17_Chr5g0403701 | 48.889 | 90 | 46 | 0 | 80 | 169 | 53 | 142 | 8.94e-16 | 73.9 |
| Msa1100430 | MtrunA17_Chr5g0403691 | 54.167 | 72 | 33 | 0 | 80 | 151 | 53 | 124 | 7.79e-15 | 71.6 |
| Msa1100430 | MtrunA17_Chr3g0135331 | 32.317 | 164 | 95 | 3 | 56 | 205 | 117 | 278 | 4.27e-14 | 70.9 |
| Msa1100430 | MtrunA17_Chr2g0299031 | 43.299 | 97 | 51 | 1 | 77 | 173 | 79 | 171 | 1.11e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100430 | AT3G01220.1 | 44.444 | 279 | 128 | 12 | 1 | 272 | 16 | 274 | 3.95e-64 | 202 |
| Msa1100430 | AT1G69780.1 | 46.097 | 269 | 112 | 10 | 20 | 271 | 35 | 287 | 1.91e-60 | 193 |
| Msa1100430 | AT5G15150.1 | 44.710 | 293 | 126 | 12 | 1 | 271 | 22 | 300 | 6.36e-60 | 192 |
| Msa1100430 | AT1G26960.1 | 42.599 | 277 | 117 | 11 | 1 | 271 | 8 | 248 | 2.15e-53 | 174 |
| Msa1100430 | AT5G65310.2 | 49.645 | 141 | 66 | 2 | 42 | 180 | 17 | 154 | 2.00e-33 | 123 |
| Msa1100430 | AT5G65310.1 | 49.645 | 141 | 66 | 2 | 42 | 180 | 35 | 172 | 2.40e-33 | 124 |
| Msa1100430 | AT2G22430.1 | 57.732 | 97 | 41 | 0 | 79 | 175 | 61 | 157 | 1.18e-30 | 116 |
| Msa1100430 | AT4G40060.1 | 56.701 | 97 | 42 | 0 | 79 | 175 | 58 | 154 | 1.89e-30 | 115 |
| Msa1100430 | AT3G01470.1 | 56.701 | 97 | 42 | 0 | 79 | 175 | 67 | 163 | 9.38e-30 | 113 |
| Msa1100430 | AT2G46680.1 | 50.549 | 91 | 45 | 0 | 83 | 173 | 35 | 125 | 9.03e-24 | 97.4 |
| Msa1100430 | AT1G27045.1 | 44.545 | 110 | 61 | 0 | 66 | 175 | 54 | 163 | 2.81e-22 | 92.4 |
| Msa1100430 | AT5G03790.1 | 33.831 | 201 | 93 | 5 | 1 | 188 | 14 | 187 | 3.74e-22 | 92.4 |
| Msa1100430 | AT1G27045.5 | 44.545 | 110 | 61 | 0 | 66 | 175 | 11 | 120 | 6.43e-22 | 90.5 |
| Msa1100430 | AT1G27045.3 | 44.545 | 110 | 61 | 0 | 66 | 175 | 11 | 120 | 6.43e-22 | 90.5 |
| Msa1100430 | AT1G27045.2 | 44.545 | 110 | 61 | 0 | 66 | 175 | 3 | 112 | 7.83e-22 | 90.1 |
| Msa1100430 | AT3G61890.1 | 48.889 | 90 | 46 | 0 | 83 | 172 | 33 | 122 | 1.08e-21 | 91.3 |
| Msa1100430 | AT1G27045.4 | 44.860 | 107 | 59 | 0 | 66 | 172 | 54 | 160 | 1.36e-21 | 91.3 |
| Msa1100430 | AT2G46680.2 | 48.837 | 86 | 44 | 0 | 83 | 168 | 35 | 120 | 2.35e-21 | 90.9 |
| Msa1100430 | AT5G03790.2 | 49.485 | 97 | 47 | 1 | 80 | 176 | 77 | 171 | 5.14e-21 | 88.2 |
| Msa1100430 | AT2G18550.1 | 34.409 | 186 | 95 | 5 | 15 | 195 | 7 | 170 | 1.82e-20 | 87.4 |
| Msa1100430 | AT4G17460.1 | 42.857 | 119 | 64 | 1 | 55 | 173 | 110 | 224 | 1.86e-20 | 89.0 |
| Msa1100430 | AT2G36610.1 | 45.946 | 111 | 45 | 2 | 72 | 174 | 63 | 166 | 5.22e-20 | 85.5 |
| Msa1100430 | AT5G47370.1 | 43.220 | 118 | 62 | 2 | 56 | 173 | 107 | 219 | 3.71e-19 | 85.1 |
| Msa1100430 | AT5G53980.1 | 45.455 | 99 | 54 | 0 | 77 | 175 | 8 | 106 | 8.46e-19 | 81.3 |
| Msa1100430 | AT3G60390.1 | 45.536 | 112 | 52 | 3 | 65 | 173 | 146 | 251 | 9.91e-19 | 84.7 |
| Msa1100430 | AT4G16780.1 | 44.545 | 110 | 57 | 1 | 64 | 173 | 113 | 218 | 1.28e-18 | 84.0 |
| Msa1100430 | AT5G06710.1 | 47.917 | 96 | 46 | 1 | 79 | 174 | 189 | 280 | 3.49e-18 | 83.2 |
| Msa1100430 | AT2G01430.1 | 44.118 | 102 | 57 | 0 | 66 | 167 | 125 | 226 | 4.13e-18 | 82.0 |
| Msa1100430 | AT4G37790.1 | 45.192 | 104 | 50 | 1 | 71 | 174 | 117 | 213 | 7.47e-18 | 81.6 |
| Msa1100430 | AT2G22800.1 | 41.176 | 119 | 54 | 3 | 56 | 174 | 98 | 200 | 2.10e-17 | 80.1 |
| Msa1100430 | AT2G44910.1 | 46.316 | 95 | 47 | 1 | 79 | 173 | 162 | 252 | 1.03e-16 | 79.0 |
| Msa1100430 | AT4G36740.2 | 42.056 | 107 | 57 | 1 | 80 | 181 | 56 | 162 | 3.41e-16 | 75.9 |
| Msa1100430 | AT4G36740.1 | 42.056 | 107 | 57 | 1 | 80 | 181 | 55 | 161 | 3.45e-16 | 75.9 |
| Msa1100430 | AT1G70920.1 | 41.818 | 110 | 58 | 2 | 64 | 173 | 55 | 158 | 1.40e-15 | 73.9 |
| Msa1100430 | AT1G70920.2 | 41.818 | 110 | 58 | 2 | 64 | 173 | 25 | 128 | 1.86e-15 | 72.8 |
| Msa1100430 | AT5G66700.1 | 48.750 | 80 | 38 | 1 | 66 | 145 | 60 | 136 | 1.15e-14 | 72.0 |
| Msa1100430 | AT5G06710.4 | 54.717 | 53 | 24 | 0 | 79 | 131 | 189 | 241 | 1.48e-11 | 63.5 |
| Msa1100430 | AT2G01430.2 | 48.485 | 66 | 34 | 0 | 66 | 131 | 125 | 190 | 2.16e-11 | 62.4 |
Find 66 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTGTTAATTAATGATTT+TGG | 0.114898 | 7_3:-30076575 | Msa1100430:three_prime_UTR |
| CTTGAGAAGAGCTTTGAATT+TGG | 0.186029 | 7_3:-30078703 | Msa1100430:CDS |
| GTGCAACTTGCTAAGGCTTT+AGG | 0.214413 | 7_3:-30078655 | Msa1100430:CDS |
| GAAGAAGATCAGGCTGAATT+TGG | 0.249178 | 7_3:-30078740 | Msa1100430:CDS |
| AGAAGTTGGGGTATGTTGTT+AGG | 0.260017 | 7_3:+30076709 | None:intergenic |
| TGCAACTTGCTAAGGCTTTA+GGG | 0.260540 | 7_3:-30078654 | Msa1100430:CDS |
| AAGTTGGTAGAAGGCTAATT+AGG | 0.295400 | 7_3:+30076740 | None:intergenic |
| TTGAGAAGAGCTTTGAATTT+GGG | 0.313267 | 7_3:-30078702 | Msa1100430:CDS |
| AGCCTAGACAAATTGCTATA+TGG | 0.333381 | 7_3:-30078627 | Msa1100430:CDS |
| TTTGGATATAATCGATCAAT+TGG | 0.372971 | 7_3:-30076557 | Msa1100430:three_prime_UTR |
| CACATCACTAGCATTCAATA+TGG | 0.378757 | 7_3:-30079429 | Msa1100430:exon |
| TGAAAGAAACTGAGGGTTCA+TGG | 0.388104 | 7_3:-30076855 | Msa1100430:CDS |
| GGGTTTGGCACTCACTTTCA+TGG | 0.390756 | 7_3:+30079563 | None:intergenic |
| AGCATCAGAACCTCTGGCCT+TGG | 0.392592 | 7_3:-30076621 | Msa1100430:CDS |
| GGTTTAATGAAGTTGGTAGA+AGG | 0.399111 | 7_3:+30076731 | None:intergenic |
| TTTCATGGTGACAAAAGTAT+TGG | 0.405200 | 7_3:+30079578 | None:intergenic |
| TGATGTGAATTGAAGAAGTT+GGG | 0.408685 | 7_3:+30076696 | None:intergenic |
| GCTGAATTTGGATCAAGTTC+AGG | 0.410690 | 7_3:-30078728 | Msa1100430:CDS |
| GTGGAGAGAAGAAGAAGATC+AGG | 0.413666 | 7_3:-30078750 | Msa1100430:CDS |
| AATATATATTCAGAGGGGTT+TGG | 0.416697 | 7_3:+30079548 | None:intergenic |
| TTGTTAGGGTTTAATGAAGT+TGG | 0.422091 | 7_3:+30076724 | None:intergenic |
| GAAGTTGGGGTATGTTGTTA+GGG | 0.425644 | 7_3:+30076710 | None:intergenic |
| TCTTCTTCTTCTCTCCACTT+TGG | 0.431006 | 7_3:+30078755 | None:intergenic |
| TGTGATAAATTCATGCAAAT+TGG | 0.443285 | 7_3:+30079448 | None:intergenic |
| TTGATGTGAATTGAAGAAGT+TGG | 0.467181 | 7_3:+30076695 | None:intergenic |
| GATGATGATTTATCTGATGA+TGG | 0.471832 | 7_3:-30078781 | Msa1100430:CDS |
| AAGTGTTGAGGTGGAAAAGA+AGG | 0.489869 | 7_3:+30079326 | None:intergenic |
| AACAAGAAACTATGAGGTGG+TGG | 0.493336 | 7_3:+30079401 | None:intergenic |
| AAGAAAAGTGCAACTTGCTA+AGG | 0.504058 | 7_3:-30078662 | Msa1100430:CDS |
| TTGATGAGCATCAGAACCTC+TGG | 0.507447 | 7_3:-30076627 | Msa1100430:CDS |
| AGTGTTGAGGTGGAAAAGAA+GGG | 0.508674 | 7_3:+30079327 | None:intergenic |
| CAAATTCAAAGCTCTTCTCA+AGG | 0.519428 | 7_3:+30078704 | None:intergenic |
| AGTTCTATTTCTTCACAGAA+TGG | 0.521830 | 7_3:-30076769 | Msa1100430:CDS |
| GAAGAAATTTGAAGCTGTCA+AGG | 0.526329 | 7_3:-30078542 | Msa1100430:CDS |
| CGCTGCAAACCTTAATATTG+CGG | 0.529228 | 7_3:-30076512 | Msa1100430:three_prime_UTR |
| AAAAGCAAGGATTGGTGTGA+AGG | 0.539700 | 7_3:-30076895 | Msa1100430:CDS |
| CCACCTCAACACTTTCAACA+AGG | 0.552469 | 7_3:-30079317 | Msa1100430:intron |
| CCTTGTTGAAAGTGTTGAGG+TGG | 0.554667 | 7_3:+30079317 | None:intergenic |
| TGGTGACAAAAGTATTGGAA+AGG | 0.566533 | 7_3:+30079583 | None:intergenic |
| AAGGTGTTAAGAGAAGTTGA+AGG | 0.567749 | 7_3:+30079350 | None:intergenic |
| TTGAGGTGGAAAAGAAGGGA+AGG | 0.568416 | 7_3:+30079331 | None:intergenic |
| AGCAAGGATTGGTGTGAAGG+TGG | 0.575668 | 7_3:-30076892 | Msa1100430:CDS |
| TTTAGATCTCTCAAGAACAC+AGG | 0.581192 | 7_3:-30076800 | Msa1100430:CDS |
| ATGATATAATATATATTCAG+AGG | 0.582448 | 7_3:+30079541 | None:intergenic |
| TCCAAAATCATTAATTAACA+AGG | 0.583013 | 7_3:+30076574 | None:intergenic |
| AGGTGTTAAGAGAAGTTGAA+GGG | 0.587354 | 7_3:+30079351 | None:intergenic |
| AAATTCAAAGCTCTTCTCAA+GGG | 0.589863 | 7_3:+30078705 | None:intergenic |
| TGATATAATATATATTCAGA+GGG | 0.597047 | 7_3:+30079542 | None:intergenic |
| AACCATATAGCAATTTGTCT+AGG | 0.597887 | 7_3:+30078625 | None:intergenic |
| ATGCATAATGAAAGAAACTG+AGG | 0.602715 | 7_3:-30076863 | Msa1100430:CDS |
| ACTGAGGGTTCATGGAGCAA+TGG | 0.602832 | 7_3:-30076847 | Msa1100430:CDS |
| ACAAGAAACTATGAGGTGGT+GGG | 0.605048 | 7_3:+30079402 | None:intergenic |
| TCTGATGATGGATTCCAAAG+TGG | 0.607438 | 7_3:-30078769 | Msa1100430:CDS |
| TAATCAGAAACTACAAGGAG+AGG | 0.617126 | 7_3:-30078494 | Msa1100430:intron |
| GTTCATAATCAGAAACTACA+AGG | 0.617357 | 7_3:-30078499 | Msa1100430:CDS |
| AGTTGATCATGATCTTCATG+AGG | 0.620183 | 7_3:+30079374 | None:intergenic |
| AAATGATGCATCTATGTCCA+AGG | 0.620204 | 7_3:+30076604 | None:intergenic |
| GGGTTAAACAAGAAACTATG+AGG | 0.624170 | 7_3:+30079395 | None:intergenic |
| CATGATCATCATGAAGTGCA+TGG | 0.624861 | 7_3:-30078805 | Msa1100430:CDS |
| TGACCTTGTTGAAAGTGTTG+AGG | 0.631537 | 7_3:+30079314 | None:intergenic |
| TGCATAATGAAAGAAACTGA+GGG | 0.634219 | 7_3:-30076862 | Msa1100430:CDS |
| GTTGATCATGATCTTCATGA+GGG | 0.635617 | 7_3:+30079375 | None:intergenic |
| GCATCTATGTCCAAGGCCAG+AGG | 0.638650 | 7_3:+30076611 | None:intergenic |
| GATGTGAATTGAAGAAGTTG+GGG | 0.704596 | 7_3:+30076697 | None:intergenic |
| GATATAATATATATTCAGAG+GGG | 0.715673 | 7_3:+30079543 | None:intergenic |
| TTAAACAAGAAACTATGAGG+TGG | 0.721896 | 7_3:+30079398 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAATAACAATTTGTTAT+TGG | - | chr7_3:30078085-30078104 | Msa1100430:intron | 10.0% |
| !!! | TTAAATAACAATTTGTTATT+GGG | - | chr7_3:30078086-30078105 | Msa1100430:intron | 10.0% |
| !! | TAATAAAGTCAAATAAATAA+GGG | + | chr7_3:30078345-30078364 | None:intergenic | 10.0% |
| !! | TAGTAAATTTATATTGAAAT+TGG | - | chr7_3:30078743-30078762 | Msa1100430:CDS | 10.0% |
| !!! | AATTTTTTGATATATTTCAA+CGG | - | chr7_3:30078787-30078806 | Msa1100430:CDS | 10.0% |
| !! | TGATATAATATATATTCAGA+GGG | + | chr7_3:30076492-30076511 | None:intergenic | 15.0% |
| !! | ATGATATAATATATATTCAG+AGG | + | chr7_3:30076493-30076512 | None:intergenic | 15.0% |
| !! | TATCTCTTTATATCATAAAA+AGG | - | chr7_3:30076758-30076777 | Msa1100430:CDS | 15.0% |
| !!! | ATTTAAAACAACAATAAAAC+CGG | + | chr7_3:30076787-30076806 | None:intergenic | 15.0% |
| !! | TTATAAGTATCAAAATGTAT+TGG | - | chr7_3:30077892-30077911 | Msa1100430:intron | 15.0% |
| !! | TTTATTTATATCAATCACAA+AGG | + | chr7_3:30078285-30078304 | None:intergenic | 15.0% |
| !!! | ATAAATTGATAATTTTGTGT+TGG | - | chr7_3:30078300-30078319 | Msa1100430:intron | 15.0% |
| !! | GTAATAAAGTCAAATAAATA+AGG | + | chr7_3:30078346-30078365 | None:intergenic | 15.0% |
| !! | TAAATTTATATTGAAATTGG+TGG | - | chr7_3:30078746-30078765 | Msa1100430:CDS | 15.0% |
| !!! | TTTTATGTTTTAACCTATAA+TGG | - | chr7_3:30079088-30079107 | Msa1100430:intron | 15.0% |
| !! | GATATAATATATATTCAGAG+GGG | + | chr7_3:30076491-30076510 | None:intergenic | 20.0% |
| !! | TTATATCATAAAAAGGTAAC+CGG | - | chr7_3:30076765-30076784 | Msa1100430:CDS | 20.0% |
| !!! | TATCAATTTAAAGCCATAAT+TGG | - | chr7_3:30077074-30077093 | Msa1100430:intron | 20.0% |
| !!! | AAATTCATAGTTCTGAATTA+TGG | + | chr7_3:30077120-30077139 | None:intergenic | 20.0% |
| !!! | CATTTTTTTTGTTATGTCTT+AGG | - | chr7_3:30077148-30077167 | Msa1100430:intron | 20.0% |
| !!! | ATTGATTTCTTCAACAAAAA+AGG | + | chr7_3:30077178-30077197 | None:intergenic | 20.0% |
| !!! | TTTCATCTTGATTTGAATAT+AGG | - | chr7_3:30077707-30077726 | Msa1100430:intron | 20.0% |
| !!! | TTTTACCATTTTTAGTTATG+GGG | + | chr7_3:30077936-30077955 | None:intergenic | 20.0% |
| !!! | CTTTTACCATTTTTAGTTAT+GGG | + | chr7_3:30077937-30077956 | None:intergenic | 20.0% |
| !! | CATAACTAAAAATGGTAAAA+GGG | - | chr7_3:30077936-30077955 | Msa1100430:intron | 20.0% |
| !!! | TAAAAGAGTATAACTCATAA+AGG | - | chr7_3:30077997-30078016 | Msa1100430:intron | 20.0% |
| !!! | AAAAGAGTATAACTCATAAA+GGG | - | chr7_3:30077998-30078017 | Msa1100430:intron | 20.0% |
| !!! | ATTAGAGTTATACTCTTTTA+TGG | + | chr7_3:30078115-30078134 | None:intergenic | 20.0% |
| !! | TTAATGCATTATGATTCTAT+AGG | - | chr7_3:30078411-30078430 | Msa1100430:intron | 20.0% |
| !! | AAGAGACTGATAATATTTAA+AGG | - | chr7_3:30078677-30078696 | Msa1100430:CDS | 20.0% |
| !! | AGAGACTGATAATATTTAAA+GGG | - | chr7_3:30078678-30078697 | Msa1100430:CDS | 20.0% |
| !!! | TTTAAAATATATTCAGTGTC+TGG | - | chr7_3:30078861-30078880 | Msa1100430:CDS | 20.0% |
| !! | TCCAAAATCATTAATTAACA+AGG | + | chr7_3:30079460-30079479 | None:intergenic | 20.0% |
| ! | TGTGATAAATTCATGCAAAT+TGG | + | chr7_3:30076586-30076605 | None:intergenic | 25.0% |
| !! | ATGAAAGTATAGTCCAATTA+TGG | + | chr7_3:30077090-30077109 | None:intergenic | 25.0% |
| !!! | GAAGAAATCAATGTCATTTT+CGG | - | chr7_3:30077186-30077205 | Msa1100430:intron | 25.0% |
| !! | ATTAGAAAAGAGAGAGTATA+GGG | + | chr7_3:30077580-30077599 | None:intergenic | 25.0% |
| !! | AATTAGAAAAGAGAGAGTAT+AGG | + | chr7_3:30077581-30077600 | None:intergenic | 25.0% |
| ! | CAATAATAGTTAATGACAAG+TGG | + | chr7_3:30077777-30077796 | None:intergenic | 25.0% |
| !! | ATTGAATATGAGAGTATGAT+AGG | - | chr7_3:30077852-30077871 | Msa1100430:intron | 25.0% |
| ! | ATAATCCCCATAACTAAAAA+TGG | - | chr7_3:30077928-30077947 | Msa1100430:intron | 25.0% |
| !!! | CCTTTTACCATTTTTAGTTA+TGG | + | chr7_3:30077938-30077957 | None:intergenic | 25.0% |
| ! | CCATAACTAAAAATGGTAAA+AGG | - | chr7_3:30077935-30077954 | Msa1100430:intron | 25.0% |
| !! | AAAGAGTATAACTCATAAAG+GGG | - | chr7_3:30077999-30078018 | Msa1100430:intron | 25.0% |
| ! | GAAAGATAATATGTGGATAT+TGG | + | chr7_3:30078459-30078478 | None:intergenic | 25.0% |
| ! | ATGTGTTAAAGCATATTAGT+TGG | + | chr7_3:30078630-30078649 | None:intergenic | 25.0% |
| ! | AACTAATATGCTTTAACACA+TGG | - | chr7_3:30078629-30078648 | Msa1100430:CDS | 25.0% |
| ! | TTGAATGTAACTACATATGT+TGG | + | chr7_3:30078913-30078932 | None:intergenic | 25.0% |
| !!! | GCCTTGTTAATTAATGATTT+TGG | - | chr7_3:30079456-30079475 | Msa1100430:five_prime_UTR | 25.0% |
| ! | TTTGGATATAATCGATCAAT+TGG | - | chr7_3:30079474-30079493 | Msa1100430:five_prime_UTR | 25.0% |
| !! | TGTATTTTTCCGCAATATTA+AGG | + | chr7_3:30079531-30079550 | None:intergenic | 25.0% |
| ! | TTTCATGGTGACAAAAGTAT+TGG | + | chr7_3:30076456-30076475 | None:intergenic | 30.0% |
| AATATATATTCAGAGGGGTT+TGG | + | chr7_3:30076486-30076505 | None:intergenic | 30.0% | |
| TTAAACAAGAAACTATGAGG+TGG | + | chr7_3:30076636-30076655 | None:intergenic | 30.0% | |
| !!! | GTTGTTTTAAATTGCAGTTG+CGG | - | chr7_3:30076795-30076814 | Msa1100430:CDS | 30.0% |
| GAGTCCAATATAAGTTTCAA+AGG | + | chr7_3:30076906-30076925 | None:intergenic | 30.0% | |
| TTGGACTATACTTTCATTTG+TGG | - | chr7_3:30077093-30077112 | Msa1100430:intron | 30.0% | |
| GATGATGATTTATCTGATGA+TGG | - | chr7_3:30077250-30077269 | Msa1100430:intron | 30.0% | |
| AAATTCAAAGCTCTTCTCAA+GGG | + | chr7_3:30077329-30077348 | None:intergenic | 30.0% | |
| !! | TTGAGAAGAGCTTTGAATTT+GGG | - | chr7_3:30077329-30077348 | Msa1100430:intron | 30.0% |
| AACCATATAGCAATTTGTCT+AGG | + | chr7_3:30077409-30077428 | None:intergenic | 30.0% | |
| GTTCATAATCAGAAACTACA+AGG | - | chr7_3:30077532-30077551 | Msa1100430:intron | 30.0% | |
| TTAAGTCGAAGAAGAATTTG+AGG | + | chr7_3:30077734-30077753 | None:intergenic | 30.0% | |
| !! | TCTCTCTGGAGTAAAATATT+AGG | + | chr7_3:30077805-30077824 | None:intergenic | 30.0% |
| ! | AGAGTTATACTCTTTTATGG+TGG | + | chr7_3:30078112-30078131 | None:intergenic | 30.0% |
| CATGCAAAAACATATCACAA+TGG | + | chr7_3:30078160-30078179 | None:intergenic | 30.0% | |
| ! | TTTTGTGTTGGAAGAAAGAA+AGG | - | chr7_3:30078312-30078331 | Msa1100430:intron | 30.0% |
| ATCGAGAGAAAGATAATATG+TGG | + | chr7_3:30078466-30078485 | None:intergenic | 30.0% | |
| TCTTTCTCTCGATTAATTGT+TGG | - | chr7_3:30078473-30078492 | Msa1100430:intron | 30.0% | |
| TCTTCATGTCAATTTCAACA+TGG | + | chr7_3:30078661-30078680 | None:intergenic | 30.0% | |
| AATGTAACTACATATGTTGG+TGG | + | chr7_3:30078910-30078929 | None:intergenic | 30.0% | |
| GTTACAAGCATTAAAAAGCA+AGG | - | chr7_3:30079123-30079142 | Msa1100430:intron | 30.0% | |
| AAGCATTAAAAAGCAAGGAT+TGG | - | chr7_3:30079128-30079147 | Msa1100430:intron | 30.0% | |
| ATGCATAATGAAAGAAACTG+AGG | - | chr7_3:30079168-30079187 | Msa1100430:intron | 30.0% | |
| TGCATAATGAAAGAAACTGA+GGG | - | chr7_3:30079169-30079188 | Msa1100430:intron | 30.0% | |
| ! | AGTTCTATTTCTTCACAGAA+TGG | - | chr7_3:30079262-30079281 | Msa1100430:intron | 30.0% |
| TTGTTAGGGTTTAATGAAGT+TGG | + | chr7_3:30079310-30079329 | None:intergenic | 30.0% | |
| TGATGTGAATTGAAGAAGTT+GGG | + | chr7_3:30079338-30079357 | None:intergenic | 30.0% | |
| TTGATGTGAATTGAAGAAGT+TGG | + | chr7_3:30079339-30079358 | None:intergenic | 30.0% | |
| ! | AAGTTTTCATCTTGAAGATC+TGG | + | chr7_3:30079364-30079383 | None:intergenic | 30.0% |
| ! | CATAGATGCATCATTTTCAT+TGG | - | chr7_3:30079434-30079453 | Msa1100430:five_prime_UTR | 30.0% |
| CACATCACTAGCATTCAATA+TGG | - | chr7_3:30076602-30076621 | Msa1100430:exon | 35.0% | |
| GGGTTAAACAAGAAACTATG+AGG | + | chr7_3:30076639-30076658 | None:intergenic | 35.0% | |
| GTTGATCATGATCTTCATGA+GGG | + | chr7_3:30076659-30076678 | None:intergenic | 35.0% | |
| AGTTGATCATGATCTTCATG+AGG | + | chr7_3:30076660-30076679 | None:intergenic | 35.0% | |
| AGGTGTTAAGAGAAGTTGAA+GGG | + | chr7_3:30076683-30076702 | None:intergenic | 35.0% | |
| ! | AAGGTGTTAAGAGAAGTTGA+AGG | + | chr7_3:30076684-30076703 | None:intergenic | 35.0% |
| TGACATAGCAACCACAATTA+TGG | + | chr7_3:30076874-30076893 | None:intergenic | 35.0% | |
| !! | GAGGCCTTTGAAACTTATAT+TGG | - | chr7_3:30076899-30076918 | Msa1100430:CDS | 35.0% |
| TGAAACTTATATTGGACTCG+TGG | - | chr7_3:30076907-30076926 | Msa1100430:CDS | 35.0% | |
| GTAGTCTGTAACCTTAATTG+CGG | - | chr7_3:30076939-30076958 | Msa1100430:intron | 35.0% | |
| ATATGTTGTGACCGCAATTA+AGG | + | chr7_3:30076953-30076972 | None:intergenic | 35.0% | |
| CAAATTCAAAGCTCTTCTCA+AGG | + | chr7_3:30077330-30077349 | None:intergenic | 35.0% | |
| !! | CTTGAGAAGAGCTTTGAATT+TGG | - | chr7_3:30077328-30077347 | Msa1100430:intron | 35.0% |
| ! | CAAGTTGCACTTTTCTTTCT+GGG | + | chr7_3:30077366-30077385 | None:intergenic | 35.0% |
| !! | AAGAAAAGTGCAACTTGCTA+AGG | - | chr7_3:30077369-30077388 | Msa1100430:intron | 35.0% |
| AGCCTAGACAAATTGCTATA+TGG | - | chr7_3:30077404-30077423 | Msa1100430:intron | 35.0% | |
| ! | GAAGAAATTTGAAGCTGTCA+AGG | - | chr7_3:30077489-30077508 | Msa1100430:intron | 35.0% |
| TAATCAGAAACTACAAGGAG+AGG | - | chr7_3:30077537-30077556 | Msa1100430:intron | 35.0% | |
| !! | ATACTGACTCTTCACAAGAA+TGG | + | chr7_3:30078499-30078518 | None:intergenic | 35.0% |
| ATGTCTTGTGCTTAGAAACA+TGG | + | chr7_3:30078594-30078613 | None:intergenic | 35.0% | |
| AAATATATTCAGTGTCTGGC+AGG | - | chr7_3:30078865-30078884 | Msa1100430:intron | 35.0% | |
| ! | ATTTTGTCTTGTCTGTGCAT+CGG | - | chr7_3:30078960-30078979 | Msa1100430:intron | 35.0% |
| TTTAGATCTCTCAAGAACAC+AGG | - | chr7_3:30079231-30079250 | Msa1100430:intron | 35.0% | |
| !! | AAGTTGGTAGAAGGCTAATT+AGG | + | chr7_3:30079294-30079313 | None:intergenic | 35.0% |
| !! | GGTTTAATGAAGTTGGTAGA+AGG | + | chr7_3:30079303-30079322 | None:intergenic | 35.0% |
| GATGTGAATTGAAGAAGTTG+GGG | + | chr7_3:30079337-30079356 | None:intergenic | 35.0% | |
| AAATGATGCATCTATGTCCA+AGG | + | chr7_3:30079430-30079449 | None:intergenic | 35.0% | |
| ACAAGAAACTATGAGGTGGT+GGG | + | chr7_3:30076632-30076651 | None:intergenic | 40.0% | |
| AACAAGAAACTATGAGGTGG+TGG | + | chr7_3:30076633-30076652 | None:intergenic | 40.0% | |
| ! | AGTGTTGAGGTGGAAAAGAA+GGG | + | chr7_3:30076707-30076726 | None:intergenic | 40.0% |
| !! | AAGTGTTGAGGTGGAAAAGA+AGG | + | chr7_3:30076708-30076727 | None:intergenic | 40.0% |
| !! | TGACCTTGTTGAAAGTGTTG+AGG | + | chr7_3:30076720-30076739 | None:intergenic | 40.0% |
| AACCACAATTATGGTCGCAT+CGG | + | chr7_3:30076865-30076884 | None:intergenic | 40.0% | |
| ! | TGCGGTCACAACATATTTTG+AGG | - | chr7_3:30076957-30076976 | Msa1100430:intron | 40.0% |
| AACCACAATTAAAGCCGCAT+TGG | - | chr7_3:30076998-30077017 | Msa1100430:intron | 40.0% | |
| TGCTACGAACGTTTATGTTG+CGG | + | chr7_3:30077034-30077053 | None:intergenic | 40.0% | |
| CATGATCATCATGAAGTGCA+TGG | - | chr7_3:30077226-30077245 | Msa1100430:intron | 40.0% | |
| !! | TCTGATGATGGATTCCAAAG+TGG | - | chr7_3:30077262-30077281 | Msa1100430:intron | 40.0% |
| TCTTCTTCTTCTCTCCACTT+TGG | + | chr7_3:30077279-30077298 | None:intergenic | 40.0% | |
| GAAGAAGATCAGGCTGAATT+TGG | - | chr7_3:30077291-30077310 | Msa1100430:intron | 40.0% | |
| GCTGAATTTGGATCAAGTTC+AGG | - | chr7_3:30077303-30077322 | Msa1100430:intron | 40.0% | |
| ! | GCAAGTTGCACTTTTCTTTC+TGG | + | chr7_3:30077367-30077386 | None:intergenic | 40.0% |
| !! | TGCAACTTGCTAAGGCTTTA+GGG | - | chr7_3:30077377-30077396 | Msa1100430:intron | 40.0% |
| GAAACTACAAGGAGAGGTAA+AGG | - | chr7_3:30077543-30077562 | Msa1100430:intron | 40.0% | |
| ! | GGGAGTAGTGTGCTATTAAT+CGG | - | chr7_3:30077956-30077975 | Msa1100430:intron | 40.0% |
| CTCATAAAGGGGAACATGAT+TGG | - | chr7_3:30078010-30078029 | Msa1100430:intron | 40.0% | |
| CTGCAATGCAACACCATTAT+AGG | + | chr7_3:30079104-30079123 | None:intergenic | 40.0% | |
| ! | AAAAGCAAGGATTGGTGTGA+AGG | - | chr7_3:30079136-30079155 | Msa1100430:intron | 40.0% |
| TGAAAGAAACTGAGGGTTCA+TGG | - | chr7_3:30079176-30079195 | Msa1100430:intron | 40.0% | |
| GAAGTTGGGGTATGTTGTTA+GGG | + | chr7_3:30079324-30079343 | None:intergenic | 40.0% | |
| AGAAGTTGGGGTATGTTGTT+AGG | + | chr7_3:30079325-30079344 | None:intergenic | 40.0% | |
| CGCTGCAAACCTTAATATTG+CGG | - | chr7_3:30079519-30079538 | Msa1100430:five_prime_UTR | 40.0% | |
| TTGAGGTGGAAAAGAAGGGA+AGG | + | chr7_3:30076703-30076722 | None:intergenic | 45.0% | |
| !! | CCTTGTTGAAAGTGTTGAGG+TGG | + | chr7_3:30076717-30076736 | None:intergenic | 45.0% |
| CCACCTCAACACTTTCAACA+AGG | - | chr7_3:30076714-30076733 | Msa1100430:CDS | 45.0% | |
| ! | GACCAATGCGGCTTTAATTG+TGG | + | chr7_3:30077003-30077022 | None:intergenic | 45.0% |
| GCTACGAACGTTTATGTTGC+GGG | + | chr7_3:30077033-30077052 | None:intergenic | 45.0% | |
| GTGGAGAGAAGAAGAAGATC+AGG | - | chr7_3:30077281-30077300 | Msa1100430:intron | 45.0% | |
| !! | GTGCAACTTGCTAAGGCTTT+AGG | - | chr7_3:30077376-30077395 | Msa1100430:intron | 45.0% |
| CTTATCTCTCTCTCTCTCTC+TGG | + | chr7_3:30077819-30077838 | None:intergenic | 45.0% | |
| ! | GTCTGTGCATCGGTACTTAA+AGG | - | chr7_3:30078970-30078989 | Msa1100430:intron | 45.0% |
| ACCTAACGCATCAGTGTGTT+AGG | - | chr7_3:30078999-30079018 | Msa1100430:intron | 45.0% | |
| TTGATGAGCATCAGAACCTC+TGG | - | chr7_3:30079404-30079423 | Msa1100430:CDS | 45.0% | |
| GGGTTTGGCACTCACTTTCA+TGG | + | chr7_3:30076471-30076490 | None:intergenic | 50.0% | |
| GACCGATGCGACCATAATTG+TGG | - | chr7_3:30076860-30076879 | Msa1100430:CDS | 50.0% | |
| TGGTTGCTATGTCATCGCAG+AGG | - | chr7_3:30076880-30076899 | Msa1100430:CDS | 50.0% | |
| GCGGGAAAATGTGACCAATG+CGG | + | chr7_3:30077015-30077034 | None:intergenic | 50.0% | |
| !! | CATATGTTGGTGGTCTCGTG+CGG | + | chr7_3:30078900-30078919 | None:intergenic | 50.0% |
| GCCTAACACACTGATGCGTT+AGG | + | chr7_3:30079003-30079022 | None:intergenic | 50.0% | |
| ! | AGCAAGGATTGGTGTGAAGG+TGG | - | chr7_3:30079139-30079158 | Msa1100430:intron | 50.0% |
| ACTGAGGGTTCATGGAGCAA+TGG | - | chr7_3:30079184-30079203 | Msa1100430:intron | 50.0% | |
| AGCATCAGAACCTCTGGCCT+TGG | - | chr7_3:30079410-30079429 | Msa1100430:CDS | 55.0% | |
| GCATCTATGTCCAAGGCCAG+AGG | + | chr7_3:30079423-30079442 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 30076451 | 30079602 | 30076451 | ID=Msa1100430;Name=Msa1100430 |
| chr7_3 | mRNA | 30076451 | 30079602 | 30076451 | ID=Msa1100430-mRNA-1;Parent=Msa1100430;Name=Msa1100430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=170|1|0.66|1|1|1|3|164|272 |
| chr7_3 | exon | 30076451 | 30076929 | 30076451 | ID=Msa1100430-mRNA-1:exon:6440;Parent=Msa1100430-mRNA-1 |
| chr7_3 | exon | 30078495 | 30078883 | 30078495 | ID=Msa1100430-mRNA-1:exon:6439;Parent=Msa1100430-mRNA-1 |
| chr7_3 | exon | 30079318 | 30079602 | 30079318 | ID=Msa1100430-mRNA-1:exon:6438;Parent=Msa1100430-mRNA-1 |
| chr7_3 | five_prime_UTR | 30079433 | 30079602 | 30079433 | ID=Msa1100430-mRNA-1:five_prime_utr;Parent=Msa1100430-mRNA-1 |
| chr7_3 | CDS | 30079318 | 30079432 | 30079318 | ID=Msa1100430-mRNA-1:cds;Parent=Msa1100430-mRNA-1 |
| chr7_3 | CDS | 30078495 | 30078883 | 30078495 | ID=Msa1100430-mRNA-1:cds;Parent=Msa1100430-mRNA-1 |
| chr7_3 | CDS | 30076615 | 30076929 | 30076615 | ID=Msa1100430-mRNA-1:cds;Parent=Msa1100430-mRNA-1 |
| chr7_3 | three_prime_UTR | 30076451 | 30076614 | 30076451 | ID=Msa1100430-mRNA-1:three_prime_utr;Parent=Msa1100430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
