AlfalfaGEDB | Msa1102650

M. sativa cultivar zhongmu-4 / Msa1102650

KEGG: K20092
GO: GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1102650	KEH22411.1	95.216	857	39	2	1	856	1	856	0.0	1679

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1102650	sp\|F4IV45\|CHR10_ARATH	67.367	809	248	6	11	818	73	866	0.0	1119

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1102650	A0A072TZ28	95.216	857	39	2	1	856	1	856	0.0	1679

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TFs/TRs:

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Gene ID	Type	Classification
Msa1102650	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1102650	MtrunA17_Chr7g0232121	97.260	803	22	0	16	818	65	867	0.0	1623
Msa1102650	MtrunA17_Chr7g0231521	95.264	549	21	1	270	818	245	788	0.0	1083
Msa1102650	MtrunA17_Chr7g0231521	96.721	183	6	0	16	198	65	247	6.40e-118	377
Msa1102650	MtrunA17_Chr4g0066741	40.700	457	233	10	16	471	214	633	2.93e-103	344
Msa1102650	MtrunA17_Chr2g0286291	39.051	548	287	14	16	559	217	721	3.10e-101	339
Msa1102650	MtrunA17_Chr5g0394201	40.471	467	236	10	16	475	389	820	1.09e-99	335
Msa1102650	MtrunA17_Chr1g0205891	40.899	467	235	10	16	475	402	834	2.99e-99	334
Msa1102650	MtrunA17_Chr3g0137091	36.525	564	296	11	16	560	315	835	1.68e-98	336
Msa1102650	MtrunA17_Chr5g0442141	35.423	638	324	20	16	622	643	1223	1.01e-96	333
Msa1102650	MtrunA17_Chr3g0095091	37.570	535	286	11	16	531	597	1102	1.67e-94	326

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1102650	AT2G44980.2	67.367	809	248	6	11	818	73	866	0.0	1119
Msa1102650	AT2G44980.3	67.537	804	245	6	16	818	77	865	0.0	1117
Msa1102650	AT2G44980.1	66.749	809	234	7	11	818	73	847	0.0	1101
Msa1102650	AT5G18620.2	42.232	457	226	9	16	471	220	639	1.30e-100	338
Msa1102650	AT5G18620.1	42.232	457	226	9	16	471	220	639	1.30e-100	338
Msa1102650	AT5G19310.2	40.685	467	235	9	16	475	148	579	1.88e-100	331
Msa1102650	AT3G06400.1	42.451	457	225	11	16	471	215	634	2.09e-100	337
Msa1102650	AT3G06400.3	42.451	457	225	11	16	471	215	634	2.37e-100	337
Msa1102650	AT3G06400.2	42.451	457	225	11	16	471	215	634	2.50e-100	337
Msa1102650	AT3G06010.1	40.257	467	238	9	16	475	429	861	2.18e-98	332

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Find 176 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGCCCATGAGACAAC+TGG	0.530577	7_3:-36126719	None:intergenic
AAAGCTTGTCTGTCCACCTG+AGG	0.557008	7_3:-36130139	None:intergenic
AAAGTGCGCCAGTTGTCTCA+TGG	0.458523	7_3:+36126711	Msa1102650:CDS
AAATATCGACAGATGGGATT+GGG	0.468473	7_3:+36126651	Msa1102650:CDS
AAATATTTGATAAGGATGAC+AGG	0.553111	7_3:+36130557	Msa1102650:CDS
AAATCAAAGCTTATGGAGTG+TGG	0.577677	7_3:+36128711	Msa1102650:CDS
AACAAACTCACATTATTTGT+TGG	0.356468	7_3:-36126989	None:intergenic
AACAGAACCAGCATCTAATA+TGG	0.368832	7_3:-36130893	None:intergenic
AACAGTTCATGATTCTCCAA+AGG	0.589664	7_3:+36128629	Msa1102650:intron
AAGAAAAGAAGCTGTCTAAG+TGG	0.545430	7_3:+36130809	Msa1102650:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAAAATGAAAGCAGGAAAA+TGG	-	chr7_3:36126814-36126833	None:intergenic	30.0%
TGACAATTGTTGCAATACTT+TGG	+	chr7_3:36127074-36127093	Msa1102650:intron	30.0%
TGATCAACAGTAGTCATATT+TGG	+	chr7_3:36127320-36127339	Msa1102650:intron	30.0%
ATGAGCTATTTAGGCTTAAT+AGG	+	chr7_3:36127376-36127395	Msa1102650:intron	30.0%
AAAATGATAATACTGACCTG+AGG	-	chr7_3:36127685-36127704	None:intergenic	30.0%
GAGTAGTGCTTATAAAGTTT+GGG	-	chr7_3:36127884-36127903	None:intergenic	30.0%
TGAGTAGTGCTTATAAAGTT+TGG	-	chr7_3:36127885-36127904	None:intergenic	30.0%
ACGAACTAAATCAAAGCTTA+TGG	+	chr7_3:36128704-36128723	Msa1102650:CDS	30.0%
GTTCTAATTAGATACTACCT+TGG	+	chr7_3:36128783-36128802	Msa1102650:intron	30.0%
TTCTTTCACCTTGTAGTTAA+TGG	+	chr7_3:36129024-36129043	Msa1102650:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	36126615	36133122	36126615	ID=Msa1102650;Name=Msa1102650
chr7_3	mRNA	36126615	36133122	36126615	ID=Msa1102650-mRNA-1;Parent=Msa1102650;Name=Msa1102650-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|0.92\|0.86\|1\|1\|1\|15\|121\|879
chr7_3	exon	36126615	36126741	36126615	ID=Msa1102650-mRNA-1:exon:7548;Parent=Msa1102650-mRNA-1
chr7_3	exon	36126843	36127000	36126843	ID=Msa1102650-mRNA-1:exon:7549;Parent=Msa1102650-mRNA-1
chr7_3	exon	36127100	36127228	36127100	ID=Msa1102650-mRNA-1:exon:7550;Parent=Msa1102650-mRNA-1
chr7_3	exon	36127507	36127687	36127507	ID=Msa1102650-mRNA-1:exon:7551;Parent=Msa1102650-mRNA-1
chr7_3	exon	36128634	36128769	36128634	ID=Msa1102650-mRNA-1:exon:7552;Parent=Msa1102650-mRNA-1
chr7_3	exon	36128875	36128992	36128875	ID=Msa1102650-mRNA-1:exon:7553;Parent=Msa1102650-mRNA-1
chr7_3	exon	36129069	36129158	36129069	ID=Msa1102650-mRNA-1:exon:7554;Parent=Msa1102650-mRNA-1
chr7_3	exon	36129621	36129728	36129621	ID=Msa1102650-mRNA-1:exon:7555;Parent=Msa1102650-mRNA-1
chr7_3	exon	36129813	36130016	36129813	ID=Msa1102650-mRNA-1:exon:7556;Parent=Msa1102650-mRNA-1
chr7_3	exon	36130112	36130237	36130112	ID=Msa1102650-mRNA-1:exon:7557;Parent=Msa1102650-mRNA-1
chr7_3	exon	36130322	36130983	36130322	ID=Msa1102650-mRNA-1:exon:7558;Parent=Msa1102650-mRNA-1
chr7_3	exon	36131593	36131738	36131593	ID=Msa1102650-mRNA-1:exon:7559;Parent=Msa1102650-mRNA-1
chr7_3	exon	36131919	36132083	36131919	ID=Msa1102650-mRNA-1:exon:7560;Parent=Msa1102650-mRNA-1
chr7_3	exon	36132617	36132717	36132617	ID=Msa1102650-mRNA-1:exon:7561;Parent=Msa1102650-mRNA-1
chr7_3	exon	36132813	36133122	36132813	ID=Msa1102650-mRNA-1:exon:7562;Parent=Msa1102650-mRNA-1
chr7_3	CDS	36126615	36126741	36126615	ID=Msa1102650-mRNA-1:cds;Parent=Msa1102650-mRNA-1
chr7_3	CDS	36126843	36127000	36126843	ID=Msa1102650-mRNA-1:cds;Parent=Msa1102650-mRNA-1
chr7_3	CDS	36127100	36127228	36127100	ID=Msa1102650-mRNA-1:cds;Parent=Msa1102650-mRNA-1
chr7_3	CDS	36127507	36127687	36127507	ID=Msa1102650-mRNA-1:cds;Parent=Msa1102650-mRNA-1
chr7_3	CDS	36128634	36128769	36128634	ID=Msa1102650-mRNA-1:cds;Parent=Msa1102650-mRNA-1
chr7_3	CDS	36128875	36128992	36128875	ID=Msa1102650-mRNA-1:cds;Parent=Msa1102650-mRNA-1
chr7_3	CDS	36129069	36129158	36129069	ID=Msa1102650-mRNA-1:cds;Parent=Msa1102650-mRNA-1
chr7_3	CDS	36129621	36129728	36129621	ID=Msa1102650-mRNA-1:cds;Parent=Msa1102650-mRNA-1
chr7_3	CDS	36129813	36130016	36129813	ID=Msa1102650-mRNA-1:cds;Parent=Msa1102650-mRNA-1
chr7_3	CDS	36130112	36130237	36130112	ID=Msa1102650-mRNA-1:cds;Parent=Msa1102650-mRNA-1
chr7_3	CDS	36130322	36130983	36130322	ID=Msa1102650-mRNA-1:cds;Parent=Msa1102650-mRNA-1
chr7_3	CDS	36131593	36131738	36131593	ID=Msa1102650-mRNA-1:cds;Parent=Msa1102650-mRNA-1
chr7_3	CDS	36131919	36132083	36131919	ID=Msa1102650-mRNA-1:cds;Parent=Msa1102650-mRNA-1
chr7_3	CDS	36132617	36132717	36132617	ID=Msa1102650-mRNA-1:cds;Parent=Msa1102650-mRNA-1
chr7_3	CDS	36132813	36133001	36132813	ID=Msa1102650-mRNA-1:cds;Parent=Msa1102650-mRNA-1
chr7_3	three_prime_UTR	36133002	36133122	36133002	ID=Msa1102650-mRNA-1:three_prime_utr;Parent=Msa1102650-mRNA-1

Gene Sequence

>Msa1102650

ATGATTCCTGATGTGTTTATGTTACCGTCTGTTTATAAATATCGACAGATGGGATTGGGCAAGACATTGCAAGCTATCTCATTTTTAAGCTATTTGAAAGTGCGCCAGTTGTCTCATGGGCCATTTTTGGTCATATGTCCTTTAAGTGTGACAGATGGTTGGGTGTCTGAGATAGTCAAATATGCCCCTAAACTAGAAGTCTTTAAATATGTTGGTGATAAAGAATATAGGCGCAGTCTACGTATGAAAACACATGAACATGTAACAAAGCAGCCAACAAATAATGCCATGTTACCTTTCGATGTGCTGTTAACATCATATGACATTGCACTGATGGATAAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATCGATGAAGCCCAAAGGCTCAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCAAGAAGGTTGTTGATGACTGGCACTCCTATTCAGAACAACCTTTCTGAACTGTGGGCATTGATGCATTTTTGTATGCCATCTGTTTTTGGGACACTAGATCAGTTCCTTTCTACATTCAAGGACATCGGTGATCTTACCTCAGTTCATGATTCTCCAAAGGTAAAGGAGAGACTTCAAATCCTAAGAAGTGTATTGGCTGCGTTTATGCTCCGACGAACTAAATCAAAGCTTATGGAGTGTGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACTGTGTTAGTACCACTTGTTAGCCTGCAAAAAAAGGTCTACATGTCAATACTGAGGAAGGAACTTCCGAAGCTAGTCGCACTATCTTCTGGAACATCAAATCACCAATCACTACAGAATACTGTGATGCAACTAAGGAAAGCATGCAGCCATCCTTATCTTTTTCCGGGTATTGAACCTGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTACTGATTCTTGACCAACTTCTTCGAAAGCTACATCATAATGGACATCGTATTCTTCTTTTTGCTCAGATGACACATACACTTGACATTTTGCAGGATTATCTGGAGTTACGTAAGTATTCTTACGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGCAACTCATCAGCTAATACGGGCTTGAATTTTGAAGCTAACCAAAACGGAGCTTTTGTTTTTATGATCTCAACAAGAGCTGGGGGAGTTGGCTTGAATCTCGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAGACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGCAGCTGAGCCTAAATGTTACAGGCGATAATATTGTGGAAAATGAAGATAAACAATTATCTTCAGTTGGAACTGGTGATTTGAAATCCATCATAGTTGGGTTACGTATGTTTGATCCCAATGAAATCAATGATGGAAAAGAAAAGGACATGGATTTAACAGAAATTAATGCAATGGCTGACAAAGTGATTGCTATTCGTGATGAACAAATATTTGATAAGGATGACAGGAAATTTGAGGTCAATCCAAGAAACTTTTTAAAAGGATTTGATGTTAAGGAAAGAGGTTCTACTTCTTTCTCTTGTGATCTTGATCTTGATGAGGCATCATATCTTGATTGGGTTAAAAAATTTGAGGAAGTTTCTAAATCAAGTTGCGACTCAGTTATTGACTTGAAAAGCAGAAGGAACTTGGATGAGGAAAAAAGTCAAAAACTTGAGACTGCAAGGAAGAAGGCAGAAGAAAAGAAGCTGTCTAAGTGGAACGCTGCTGGATACCATTCGTTGAATGTTGAAGACCCTATTAGCCCACCAGATGGAGATACCATATTAGATGCTGGTTCTGTTCATTTTGTGTATGGAGATTGTACATCCCCGACAAACGTTCCTTCATCTGAACCTGCTTTAATATTCAGCTGTGTTGACACCTCCGGACGTTGGGGCCATGGTGGAATGTTTGATGCACTATCTAAACTTTCATCAAGCATCAGTGATGCATATGAACGGGCTTCTGAATATGGGGATTTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGATGGTAACGATCAAAATTTGGATGGTAATTCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCCTACAATCCAAGGCGTAAAGTCCCTCGAAGTGAAATCTCACTTGTTGACTTGGAAAGCTGCTTATCAAAGGCAGCGTTCTCAGCCTCTCAAAATTCTGCATCAATACACATGCCACGGGTTGGTTATCAAGATGGATCTGATCGCTCTCAATGGTACACCATAGAACGGCTTCTAAGAAAATATGCCTCCATGTACAACGTATTATTACCGAAGATAATGTTATGGATTCAGGCTGTTTCCAGACACGAGGGACAGTTCAGATGGAAAAAAGAGCTTGAAGATACGTTTCCAGACACAAGTATGTATATAAGAATTTCGGACAACACAATTGTAATGTGTTGCAAATCCTTTGAAGTGTTAGAACATGATTTACATGTTGAGACATGA

Protein sequence

>Msa1102650

MIPDVFMLPSVYKYRQMGLGKTLQAISFLSYLKVRQLSHGPFLVICPLSVTDGWVSEIVKYAPKLEVFKYVGDKEYRRSLRMKTHEHVTKQPTNNAMLPFDVLLTSYDIALMDKDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLDQFLSTFKDIGDLTSVHDSPKVKERLQILRSVLAAFMLRRTKSKLMECGSLVLPPLTETTVLVPLVSLQKKVYMSILRKELPKLVALSSGTSNHQSLQNTVMQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLRKLHHNGHRILLFAQMTHTLDILQDYLELRKYSYERLDGSIRAEERFAAIRSFSNSSANTGLNFEANQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDRQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNIVENEDKQLSSVGTGDLKSIIVGLRMFDPNEINDGKEKDMDLTEINAMADKVIAIRDEQIFDKDDRKFEVNPRNFLKGFDVKERGSTSFSCDLDLDEASYLDWVKKFEEVSKSSCDSVIDLKSRRNLDEEKSQKLETARKKAEEKKLSKWNAAGYHSLNVEDPISPPDGDTILDAGSVHFVYGDCTSPTNVPSSEPALIFSCVDTSGRWGHGGMFDALSKLSSSISDAYERASEYGDLHLGDLHLIRLEDDGNDQNLDGNSPKMVALAVVQSYNPRRKVPRSEISLVDLESCLSKAAFSASQNSASIHMPRVGYQDGSDRSQWYTIERLLRKYASMYNVLLPKIMLWIQAVSRHEGQFRWKKELEDTFPDTSMYIRISDNTIVMCCKSFEVLEHDLHVET*