Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103170 | PNX99521.1 | 54.696 | 181 | 52 | 2 | 24 | 174 | 25 | 205 | 2.32e-50 | 191 |
| Msa1103170 | PNX99521.1 | 65.926 | 270 | 56 | 4 | 172 | 409 | 393 | 658 | 7.37e-107 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103170 | sp|Q9LKR4|FRS10_ARATH | 37.778 | 180 | 74 | 4 | 24 | 174 | 28 | 198 | 9.44e-24 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103170 | A0A2K3N8Z5 | 54.696 | 181 | 52 | 2 | 24 | 174 | 25 | 205 | 1.11e-50 | 191 |
| Msa1103170 | A0A2K3N8Z5 | 65.926 | 270 | 56 | 4 | 172 | 409 | 393 | 658 | 3.52e-107 | 339 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1103170 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103170 | MtrunA17_Chr1g0198761 | 63.504 | 274 | 65 | 3 | 168 | 409 | 479 | 749 | 4.33e-107 | 332 |
| Msa1103170 | MtrunA17_Chr1g0198761 | 50.270 | 185 | 62 | 2 | 20 | 174 | 13 | 197 | 3.23e-48 | 175 |
| Msa1103170 | MtrunA17_Chr5g0431001 | 54.945 | 182 | 53 | 1 | 22 | 174 | 30 | 211 | 2.47e-55 | 190 |
| Msa1103170 | MtrunA17_Chr5g0430921 | 79.310 | 87 | 15 | 1 | 323 | 409 | 1 | 84 | 1.55e-41 | 141 |
| Msa1103170 | MtrunA17_Chr2g0294841 | 28.417 | 278 | 140 | 7 | 168 | 393 | 475 | 745 | 9.52e-25 | 106 |
| Msa1103170 | MtrunA17_Chr2g0294841 | 32.474 | 194 | 86 | 7 | 20 | 174 | 6 | 193 | 7.70e-16 | 79.7 |
| Msa1103170 | MtrunA17_Chr2g0276841 | 32.474 | 194 | 93 | 4 | 168 | 326 | 497 | 687 | 8.68e-24 | 103 |
| Msa1103170 | MtrunA17_Chr2g0276841 | 37.500 | 160 | 64 | 3 | 45 | 174 | 62 | 215 | 3.54e-23 | 102 |
| Msa1103170 | MtrunA17_Chr2g0290391 | 37.255 | 153 | 58 | 3 | 52 | 174 | 50 | 194 | 1.13e-18 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103170 | AT5G28530.4 | 37.778 | 180 | 74 | 4 | 24 | 174 | 28 | 198 | 6.34e-25 | 107 |
| Msa1103170 | AT5G28530.5 | 37.778 | 180 | 74 | 4 | 24 | 174 | 28 | 198 | 6.34e-25 | 107 |
| Msa1103170 | AT5G28530.1 | 37.778 | 180 | 74 | 4 | 24 | 174 | 28 | 198 | 9.60e-25 | 107 |
| Msa1103170 | AT5G28530.3 | 37.778 | 180 | 74 | 4 | 24 | 174 | 28 | 198 | 1.06e-24 | 107 |
| Msa1103170 | AT5G28530.2 | 37.778 | 180 | 74 | 4 | 24 | 174 | 28 | 198 | 1.06e-24 | 107 |
| Msa1103170 | AT1G10240.2 | 32.461 | 191 | 97 | 2 | 168 | 326 | 475 | 665 | 7.45e-24 | 104 |
| Msa1103170 | AT1G10240.2 | 37.975 | 158 | 62 | 3 | 47 | 174 | 42 | 193 | 3.97e-23 | 102 |
| Msa1103170 | AT1G10240.1 | 32.461 | 191 | 97 | 2 | 168 | 326 | 475 | 665 | 7.45e-24 | 104 |
| Msa1103170 | AT1G10240.1 | 37.975 | 158 | 62 | 3 | 47 | 174 | 42 | 193 | 3.97e-23 | 102 |
Find 58 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGATAATTTGATTTATT+TGG | 0.093166 | 7_3:-38349234 | Msa1103170:CDS |
| ACATCATAACCATCATTATT+TGG | 0.153794 | 7_3:+38349191 | None:intergenic |
| TTGACTATGTGACTGCATTT+TGG | 0.212419 | 7_3:+38349398 | None:intergenic |
| ATCAAATTATCTTGACTTGC+AGG | 0.274591 | 7_3:+38349242 | None:intergenic |
| AGTACCATAATTCTCTAATT+AGG | 0.289351 | 7_3:-38349744 | Msa1103170:CDS |
| TTGTCCTAATTAGAGAATTA+TGG | 0.303893 | 7_3:+38349740 | None:intergenic |
| TAGTTCCAGGCTGAGGTTCT+TGG | 0.304969 | 7_3:+38350340 | None:intergenic |
| GTGACAACGTCGAAGCTTCT+TGG | 0.321956 | 7_3:+38349097 | None:intergenic |
| CTACATGAAGATGATGAATA+TGG | 0.324911 | 7_3:-38350390 | Msa1103170:CDS |
| TTTGCAGCATGTTCCTCAAT+AGG | 0.334456 | 7_3:+38349712 | None:intergenic |
| TTACTCACTTCAACATTTCA+TGG | 0.336618 | 7_3:-38350846 | Msa1103170:CDS |
| ATGATTGGTTCCGCCGCAAT+TGG | 0.338559 | 7_3:+38349070 | None:intergenic |
| GCAGCTTCAACTCCACCTTT+TGG | 0.341287 | 7_3:+38349119 | None:intergenic |
| CACATAGTCAAATGCAATAA+TGG | 0.343756 | 7_3:-38349386 | Msa1103170:CDS |
| AAATTCCTCCAACAGATAAA+AGG | 0.355612 | 7_3:-38349269 | Msa1103170:CDS |
| TCAGTCTCTAATTCGATGTT+TGG | 0.382120 | 7_3:-38349348 | Msa1103170:CDS |
| AAATACATTGTAAAATTCAT+AGG | 0.384267 | 7_3:+38350260 | None:intergenic |
| GAACTAGTACTGTTGATGAT+TGG | 0.400395 | 7_3:-38350323 | Msa1103170:CDS |
| AACTAGTACTGTTGATGATT+GGG | 0.417098 | 7_3:-38350322 | Msa1103170:CDS |
| TCATCAACAGTACTAGTTCC+AGG | 0.424449 | 7_3:+38350327 | None:intergenic |
| ATAATTGTTACTTGTCTGAA+TGG | 0.436529 | 7_3:+38349624 | None:intergenic |
| TTTGGAACATCGGGTACATT+GGG | 0.437206 | 7_3:+38349209 | None:intergenic |
| CCATGAGTTATTAGATGATA+AGG | 0.455510 | 7_3:-38349981 | Msa1103170:intron |
| CCATCATTATTTGGAACATC+GGG | 0.457944 | 7_3:+38349200 | None:intergenic |
| ACAATTCCGCGAGTCATGAT+TGG | 0.463296 | 7_3:+38349055 | None:intergenic |
| CTTTCTCTTCTCCATCGAAA+AGG | 0.467284 | 7_3:+38349431 | None:intergenic |
| AATCTTCACGGTGTAGTTGT+AGG | 0.475232 | 7_3:-38350071 | Msa1103170:CDS |
| TGATTGGTTCCGCCGCAATT+GGG | 0.478500 | 7_3:+38349071 | None:intergenic |
| ATTTGGAACATCGGGTACAT+TGG | 0.482649 | 7_3:+38349208 | None:intergenic |
| TGGATTAACTCAAACGCATA+TGG | 0.491586 | 7_3:+38349679 | None:intergenic |
| AAATCCAAAGGTCGGCCAAA+AGG | 0.496241 | 7_3:-38349149 | Msa1103170:CDS |
| CCAAAAGGTTCAAGGCCAAA+AGG | 0.499841 | 7_3:-38349134 | Msa1103170:CDS |
| GAGTCTGAAGATAATCCATC+AGG | 0.500480 | 7_3:-38350180 | Msa1103170:CDS |
| ACCATCATTATTTGGAACAT+CGG | 0.512682 | 7_3:+38349199 | None:intergenic |
| TACTCACTTCAACATTTCAT+GGG | 0.513159 | 7_3:-38350845 | Msa1103170:CDS |
| CATTTCATGGGACCAATCAC+AGG | 0.517417 | 7_3:-38350833 | Msa1103170:intron |
| GAATTTGTTTGTCATCGAGC+TGG | 0.517742 | 7_3:-38350144 | Msa1103170:CDS |
| CCCGATGTTCCAAATAATGA+TGG | 0.520874 | 7_3:-38349200 | Msa1103170:CDS |
| TAGACAATTCAATCTCATGT+TGG | 0.528559 | 7_3:+38349659 | None:intergenic |
| AAAGGAAACGGAAATCTTCA+CGG | 0.530189 | 7_3:-38350083 | Msa1103170:CDS |
| CCAGGCTGAGGTTCTTGGTG+TGG | 0.530208 | 7_3:+38350345 | None:intergenic |
| AAGGTCGGCCAAAAGGTTCA+AGG | 0.530766 | 7_3:-38349142 | Msa1103170:CDS |
| CCACACCAAGAACCTCAGCC+TGG | 0.549756 | 7_3:-38350345 | Msa1103170:CDS |
| CGTTGTCACGTTCCCAATTG+CGG | 0.556435 | 7_3:-38349083 | Msa1103170:CDS |
| ATTGGGATGTTACGATAAGC+GGG | 0.561005 | 7_3:+38349944 | None:intergenic |
| TAGACATCAAGCAGGAGAAG+AGG | 0.565504 | 7_3:-38349782 | Msa1103170:CDS |
| GTCAAAATTAGACATCAAGC+AGG | 0.568777 | 7_3:-38349790 | Msa1103170:CDS |
| TTGTTTCAAAATCCAAAGGT+CGG | 0.583293 | 7_3:-38349157 | Msa1103170:CDS |
| CCTGTTGTTTCAAAATCCAA+AGG | 0.583885 | 7_3:-38349161 | Msa1103170:CDS |
| AATTGGGATGTTACGATAAG+CGG | 0.587373 | 7_3:+38349943 | None:intergenic |
| ATCATTAAAGACAAAAGAGA+GGG | 0.596933 | 7_3:-38349318 | Msa1103170:CDS |
| ACAGTACTAGTTCCAGGCTG+AGG | 0.603967 | 7_3:+38350333 | None:intergenic |
| TGAGTTATTAGATGATAAGG+AGG | 0.622448 | 7_3:-38349978 | Msa1103170:intron |
| AAAGGTTCAAGGCCAAAAGG+TGG | 0.631199 | 7_3:-38349131 | Msa1103170:CDS |
| AATCATTAAAGACAAAAGAG+AGG | 0.632966 | 7_3:-38349319 | Msa1103170:CDS |
| TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 7_3:+38349002 | None:intergenic |
| GCGGAACCAATCATGACTCG+CGG | 0.676119 | 7_3:-38349061 | Msa1103170:CDS |
| TGTCACGTTCCCAATTGCGG+CGG | 0.677873 | 7_3:-38349080 | Msa1103170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATACAAGAAAATA+AGG | - | chr7_3:38349246-38349265 | Msa1103170:CDS | 10.0% |
| !!! | TTTTTTTATACAAGAAAATA+AGG | - | chr7_3:38349246-38349265 | Msa1103170:CDS | 10.0% |
| !! | AAATACATTGTAAAATTCAT+AGG | + | chr7_3:38349603-38349622 | None:intergenic | 15.0% |
| !!! | TCAAGATAATTTGATTTATT+TGG | - | chr7_3:38350626-38350645 | Msa1103170:intron | 15.0% |
| !!! | TCAATATTTTTCTTTTTGTT+TGG | + | chr7_3:38350831-38350850 | None:intergenic | 15.0% |
| !! | AAATACATTGTAAAATTCAT+AGG | + | chr7_3:38349603-38349622 | None:intergenic | 15.0% |
| !!! | TCAAGATAATTTGATTTATT+TGG | - | chr7_3:38350626-38350645 | Msa1103170:intron | 15.0% |
| !!! | TCAATATTTTTCTTTTTGTT+TGG | + | chr7_3:38350831-38350850 | None:intergenic | 15.0% |
| !!! | GTTTTGATAATTAAAATGCA+TGG | - | chr7_3:38349077-38349096 | Msa1103170:CDS | 20.0% |
| !!! | GAAATTGTTATTAGTTTGAT+GGG | - | chr7_3:38349159-38349178 | Msa1103170:CDS | 20.0% |
| !!! | AAATTGTTATTAGTTTGATG+GGG | - | chr7_3:38349160-38349179 | Msa1103170:CDS | 20.0% |
| !!! | AAGTACGTTTTTGTTTTTTA+GGG | + | chr7_3:38349309-38349328 | None:intergenic | 20.0% |
| !!! | AAAGTACGTTTTTGTTTTTT+AGG | + | chr7_3:38349310-38349329 | None:intergenic | 20.0% |
| !! | AATGATTCAGATTTGAATTA+AGG | - | chr7_3:38349377-38349396 | Msa1103170:CDS | 20.0% |
| !! | ATTAAGGATTAATATGACAT+CGG | - | chr7_3:38349393-38349412 | Msa1103170:CDS | 20.0% |
| !!! | TTAAAATTTTGTCCTTCAAA+AGG | + | chr7_3:38349566-38349585 | None:intergenic | 20.0% |
| !!! | ATATTATTGTTTTCAAAAGC+AGG | - | chr7_3:38349955-38349974 | Msa1103170:CDS | 20.0% |
| !!! | GTTTTGATAATTAAAATGCA+TGG | - | chr7_3:38349077-38349096 | Msa1103170:CDS | 20.0% |
| !!! | GAAATTGTTATTAGTTTGAT+GGG | - | chr7_3:38349159-38349178 | Msa1103170:CDS | 20.0% |
| !!! | AAATTGTTATTAGTTTGATG+GGG | - | chr7_3:38349160-38349179 | Msa1103170:CDS | 20.0% |
| !!! | AAGTACGTTTTTGTTTTTTA+GGG | + | chr7_3:38349309-38349328 | None:intergenic | 20.0% |
| !!! | AAAGTACGTTTTTGTTTTTT+AGG | + | chr7_3:38349310-38349329 | None:intergenic | 20.0% |
| !! | AATGATTCAGATTTGAATTA+AGG | - | chr7_3:38349377-38349396 | Msa1103170:CDS | 20.0% |
| !! | ATTAAGGATTAATATGACAT+CGG | - | chr7_3:38349393-38349412 | Msa1103170:CDS | 20.0% |
| !!! | TTAAAATTTTGTCCTTCAAA+AGG | + | chr7_3:38349566-38349585 | None:intergenic | 20.0% |
| !!! | ATATTATTGTTTTCAAAAGC+AGG | - | chr7_3:38349955-38349974 | Msa1103170:CDS | 20.0% |
| !! | TTGATAATTAAAATGCATGG+AGG | - | chr7_3:38349080-38349099 | Msa1103170:CDS | 25.0% |
| ! | TGATAATTAAAATGCATGGA+GGG | - | chr7_3:38349081-38349100 | Msa1103170:CDS | 25.0% |
| !! | CGAAATTGTTATTAGTTTGA+TGG | - | chr7_3:38349158-38349177 | Msa1103170:CDS | 25.0% |
| !!! | CTTTCGTTTTTCAAATGATA+GGG | - | chr7_3:38349185-38349204 | Msa1103170:CDS | 25.0% |
| ! | TAAGAAATAATGCTAGTGAT+TGG | - | chr7_3:38349419-38349438 | Msa1103170:CDS | 25.0% |
| !!! | TGAAGGACAAAATTTTAACA+CGG | - | chr7_3:38349568-38349587 | Msa1103170:intron | 25.0% |
| !!! | GAAAAAATGGATTTTCGATT+AGG | - | chr7_3:38349627-38349646 | Msa1103170:CDS | 25.0% |
| ! | TTGATGAAGTGAAAAATCAA+AGG | - | chr7_3:38349759-38349778 | Msa1103170:CDS | 25.0% |
| ! | AAGTGAAAAATCAAAGGAAA+CGG | - | chr7_3:38349765-38349784 | Msa1103170:CDS | 25.0% |
| !!! | TAAAGGCTTTGAAATAAAGT+GGG | - | chr7_3:38349828-38349847 | Msa1103170:intron | 25.0% |
| ! | TTAGAGAAATCAATAGATAC+AGG | - | chr7_3:38350012-38350031 | Msa1103170:intron | 25.0% |
| ! | AGTACCATAATTCTCTAATT+AGG | - | chr7_3:38350116-38350135 | Msa1103170:CDS | 25.0% |
| ! | TTGTCCTAATTAGAGAATTA+TGG | + | chr7_3:38350123-38350142 | None:intergenic | 25.0% |
| !! | ATAATTGTTACTTGTCTGAA+TGG | + | chr7_3:38350239-38350258 | None:intergenic | 25.0% |
| !!! | TGTAAAGAATTTGAGTTTTC+TGG | - | chr7_3:38350336-38350355 | Msa1103170:CDS | 25.0% |
| !!! | GAAAAGGAAGATATTTTGAT+GGG | + | chr7_3:38350416-38350435 | None:intergenic | 25.0% |
| ! | AATCATTAAAGACAAAAGAG+AGG | - | chr7_3:38350541-38350560 | Msa1103170:intron | 25.0% |
| ! | ATCATTAAAGACAAAAGAGA+GGG | - | chr7_3:38350542-38350561 | Msa1103170:intron | 25.0% |
| ! | ACATCATAACCATCATTATT+TGG | + | chr7_3:38350672-38350691 | None:intergenic | 25.0% |
| !! | TTGATAATTAAAATGCATGG+AGG | - | chr7_3:38349080-38349099 | Msa1103170:CDS | 25.0% |
| ! | TGATAATTAAAATGCATGGA+GGG | - | chr7_3:38349081-38349100 | Msa1103170:CDS | 25.0% |
| !! | CGAAATTGTTATTAGTTTGA+TGG | - | chr7_3:38349158-38349177 | Msa1103170:CDS | 25.0% |
| !!! | CTTTCGTTTTTCAAATGATA+GGG | - | chr7_3:38349185-38349204 | Msa1103170:CDS | 25.0% |
| ! | TAAGAAATAATGCTAGTGAT+TGG | - | chr7_3:38349419-38349438 | Msa1103170:CDS | 25.0% |
| !!! | TGAAGGACAAAATTTTAACA+CGG | - | chr7_3:38349568-38349587 | Msa1103170:intron | 25.0% |
| !!! | GAAAAAATGGATTTTCGATT+AGG | - | chr7_3:38349627-38349646 | Msa1103170:CDS | 25.0% |
| ! | TTGATGAAGTGAAAAATCAA+AGG | - | chr7_3:38349759-38349778 | Msa1103170:CDS | 25.0% |
| ! | AAGTGAAAAATCAAAGGAAA+CGG | - | chr7_3:38349765-38349784 | Msa1103170:CDS | 25.0% |
| !!! | TAAAGGCTTTGAAATAAAGT+GGG | - | chr7_3:38349828-38349847 | Msa1103170:intron | 25.0% |
| ! | TTAGAGAAATCAATAGATAC+AGG | - | chr7_3:38350012-38350031 | Msa1103170:intron | 25.0% |
| ! | AGTACCATAATTCTCTAATT+AGG | - | chr7_3:38350116-38350135 | Msa1103170:CDS | 25.0% |
| ! | TTGTCCTAATTAGAGAATTA+TGG | + | chr7_3:38350123-38350142 | None:intergenic | 25.0% |
| !! | ATAATTGTTACTTGTCTGAA+TGG | + | chr7_3:38350239-38350258 | None:intergenic | 25.0% |
| !!! | TGTAAAGAATTTGAGTTTTC+TGG | - | chr7_3:38350336-38350355 | Msa1103170:CDS | 25.0% |
| !!! | GAAAAGGAAGATATTTTGAT+GGG | + | chr7_3:38350416-38350435 | None:intergenic | 25.0% |
| ! | AATCATTAAAGACAAAAGAG+AGG | - | chr7_3:38350541-38350560 | Msa1103170:intron | 25.0% |
| ! | ATCATTAAAGACAAAAGAGA+GGG | - | chr7_3:38350542-38350561 | Msa1103170:intron | 25.0% |
| ! | ACATCATAACCATCATTATT+TGG | + | chr7_3:38350672-38350691 | None:intergenic | 25.0% |
| TTACTCACTTCAACATTTCA+TGG | - | chr7_3:38349014-38349033 | Msa1103170:CDS | 30.0% | |
| TACTCACTTCAACATTTCAT+GGG | - | chr7_3:38349015-38349034 | Msa1103170:CDS | 30.0% | |
| ATGAAAAACTAACCTGTGAT+TGG | + | chr7_3:38349042-38349061 | None:intergenic | 30.0% | |
| CCTATCATTTGAAAAACGAA+AGG | + | chr7_3:38349187-38349206 | None:intergenic | 30.0% | |
| !! | CCTTTCGTTTTTCAAATGAT+AGG | - | chr7_3:38349184-38349203 | Msa1103170:CDS | 30.0% |
| !!! | ATGTGGGTTTTTAGTTTGAT+GGG | - | chr7_3:38349210-38349229 | Msa1103170:CDS | 30.0% |
| CTACATGAAGATGATGAATA+TGG | - | chr7_3:38349470-38349489 | Msa1103170:CDS | 30.0% | |
| !! | AACTAGTACTGTTGATGATT+GGG | - | chr7_3:38349538-38349557 | Msa1103170:intron | 30.0% |
| AATGTATTTGCGCGAAAAAA+TGG | - | chr7_3:38349614-38349633 | Msa1103170:CDS | 30.0% | |
| ! | TCTCTTTTATAAACTCCTGA+TGG | + | chr7_3:38349698-38349717 | None:intergenic | 30.0% |
| !! | CTAAAGGCTTTGAAATAAAG+TGG | - | chr7_3:38349827-38349846 | Msa1103170:intron | 30.0% |
| CCTTATCATCTAATAACTCA+TGG | + | chr7_3:38349882-38349901 | None:intergenic | 30.0% | |
| CCATGAGTTATTAGATGATA+AGG | - | chr7_3:38349879-38349898 | Msa1103170:intron | 30.0% | |
| TGAGTTATTAGATGATAAGG+AGG | - | chr7_3:38349882-38349901 | Msa1103170:intron | 30.0% | |
| !! | TACGATTTTGATCGTCAATT+GGG | + | chr7_3:38349936-38349955 | None:intergenic | 30.0% |
| !! | ATACGATTTTGATCGTCAAT+TGG | + | chr7_3:38349937-38349956 | None:intergenic | 30.0% |
| !! | AACTTACCATTTTTGTGAGT+AGG | - | chr7_3:38350036-38350055 | Msa1103170:intron | 30.0% |
| TAGACAATTCAATCTCATGT+TGG | + | chr7_3:38350204-38350223 | None:intergenic | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | + | chr7_3:38350417-38350436 | None:intergenic | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | - | chr7_3:38350418-38350437 | Msa1103170:intron | 30.0% |
| CACATAGTCAAATGCAATAA+TGG | - | chr7_3:38350474-38350493 | Msa1103170:intron | 30.0% | |
| AAATTCCTCCAACAGATAAA+AGG | - | chr7_3:38350591-38350610 | Msa1103170:intron | 30.0% | |
| !! | ATCAAATTATCTTGACTTGC+AGG | + | chr7_3:38350621-38350640 | None:intergenic | 30.0% |
| ! | ACCATCATTATTTGGAACAT+CGG | + | chr7_3:38350664-38350683 | None:intergenic | 30.0% |
| TTGTTTCAAAATCCAAAGGT+CGG | - | chr7_3:38350703-38350722 | Msa1103170:intron | 30.0% | |
| TTACTCACTTCAACATTTCA+TGG | - | chr7_3:38349014-38349033 | Msa1103170:CDS | 30.0% | |
| TACTCACTTCAACATTTCAT+GGG | - | chr7_3:38349015-38349034 | Msa1103170:CDS | 30.0% | |
| ATGAAAAACTAACCTGTGAT+TGG | + | chr7_3:38349042-38349061 | None:intergenic | 30.0% | |
| CCTATCATTTGAAAAACGAA+AGG | + | chr7_3:38349187-38349206 | None:intergenic | 30.0% | |
| !! | CCTTTCGTTTTTCAAATGAT+AGG | - | chr7_3:38349184-38349203 | Msa1103170:CDS | 30.0% |
| !!! | ATGTGGGTTTTTAGTTTGAT+GGG | - | chr7_3:38349210-38349229 | Msa1103170:CDS | 30.0% |
| CTACATGAAGATGATGAATA+TGG | - | chr7_3:38349470-38349489 | Msa1103170:CDS | 30.0% | |
| !! | AACTAGTACTGTTGATGATT+GGG | - | chr7_3:38349538-38349557 | Msa1103170:intron | 30.0% |
| AATGTATTTGCGCGAAAAAA+TGG | - | chr7_3:38349614-38349633 | Msa1103170:CDS | 30.0% | |
| ! | TCTCTTTTATAAACTCCTGA+TGG | + | chr7_3:38349698-38349717 | None:intergenic | 30.0% |
| !! | CTAAAGGCTTTGAAATAAAG+TGG | - | chr7_3:38349827-38349846 | Msa1103170:intron | 30.0% |
| CCTTATCATCTAATAACTCA+TGG | + | chr7_3:38349882-38349901 | None:intergenic | 30.0% | |
| CCATGAGTTATTAGATGATA+AGG | - | chr7_3:38349879-38349898 | Msa1103170:intron | 30.0% | |
| TGAGTTATTAGATGATAAGG+AGG | - | chr7_3:38349882-38349901 | Msa1103170:intron | 30.0% | |
| !! | TACGATTTTGATCGTCAATT+GGG | + | chr7_3:38349936-38349955 | None:intergenic | 30.0% |
| !! | ATACGATTTTGATCGTCAAT+TGG | + | chr7_3:38349937-38349956 | None:intergenic | 30.0% |
| !! | AACTTACCATTTTTGTGAGT+AGG | - | chr7_3:38350036-38350055 | Msa1103170:intron | 30.0% |
| TAGACAATTCAATCTCATGT+TGG | + | chr7_3:38350204-38350223 | None:intergenic | 30.0% | |
| !! | CGAAAAGGAAGATATTTTGA+TGG | + | chr7_3:38350417-38350436 | None:intergenic | 30.0% |
| ! | CAAAATATCTTCCTTTTCGA+TGG | - | chr7_3:38350418-38350437 | Msa1103170:intron | 30.0% |
| CACATAGTCAAATGCAATAA+TGG | - | chr7_3:38350474-38350493 | Msa1103170:intron | 30.0% | |
| AAATTCCTCCAACAGATAAA+AGG | - | chr7_3:38350591-38350610 | Msa1103170:intron | 30.0% | |
| !! | ATCAAATTATCTTGACTTGC+AGG | + | chr7_3:38350621-38350640 | None:intergenic | 30.0% |
| ! | ACCATCATTATTTGGAACAT+CGG | + | chr7_3:38350664-38350683 | None:intergenic | 30.0% |
| TTGTTTCAAAATCCAAAGGT+CGG | - | chr7_3:38350703-38350722 | Msa1103170:intron | 30.0% | |
| ! | AATCTTGTTGTAGCAAGCAA+AGG | + | chr7_3:38349108-38349127 | None:intergenic | 35.0% |
| TTTCAAATGATAGGGACATG+TGG | - | chr7_3:38349193-38349212 | Msa1103170:CDS | 35.0% | |
| TTCAAATGATAGGGACATGT+GGG | - | chr7_3:38349194-38349213 | Msa1103170:CDS | 35.0% | |
| !!! | CATGTGGGTTTTTAGTTTGA+TGG | - | chr7_3:38349209-38349228 | Msa1103170:CDS | 35.0% |
| !! | GAACTAGTACTGTTGATGAT+TGG | - | chr7_3:38349537-38349556 | Msa1103170:intron | 35.0% |
| AAAGGAAACGGAAATCTTCA+CGG | - | chr7_3:38349777-38349796 | Msa1103170:CDS | 35.0% | |
| !! | GCAAAGTTGTTGGTTTCTAA+AGG | - | chr7_3:38349811-38349830 | Msa1103170:intron | 35.0% |
| CATCTAATAACTCATGGTTG+TGG | + | chr7_3:38349876-38349895 | None:intergenic | 35.0% | |
| AATTGGGATGTTACGATAAG+CGG | + | chr7_3:38349920-38349939 | None:intergenic | 35.0% | |
| !! | TACCATTTTTGTGAGTAGGT+TGG | - | chr7_3:38350040-38350059 | Msa1103170:intron | 35.0% |
| GTCAAAATTAGACATCAAGC+AGG | - | chr7_3:38350070-38350089 | Msa1103170:CDS | 35.0% | |
| ! | TAGGACAACTTTTCCTATTG+AGG | - | chr7_3:38350135-38350154 | Msa1103170:CDS | 35.0% |
| TGGATTAACTCAAACGCATA+TGG | + | chr7_3:38350184-38350203 | None:intergenic | 35.0% | |
| ! | TTTTACAAGTAGCACTCGAA+TGG | + | chr7_3:38350379-38350398 | None:intergenic | 35.0% |
| ! | TGACTATGTGACTGCATTTT+GGG | + | chr7_3:38350464-38350483 | None:intergenic | 35.0% |
| ! | TTGACTATGTGACTGCATTT+TGG | + | chr7_3:38350465-38350484 | None:intergenic | 35.0% |
| TCAGTCTCTAATTCGATGTT+TGG | - | chr7_3:38350512-38350531 | Msa1103170:intron | 35.0% | |
| ! | CCATCATTATTTGGAACATC+GGG | + | chr7_3:38350663-38350682 | None:intergenic | 35.0% |
| !!! | CCTTTGGATTTTGAAACAAC+AGG | + | chr7_3:38350702-38350721 | None:intergenic | 35.0% |
| !! | CCTGTTGTTTCAAAATCCAA+AGG | - | chr7_3:38350699-38350718 | Msa1103170:intron | 35.0% |
| ! | AATCTTGTTGTAGCAAGCAA+AGG | + | chr7_3:38349108-38349127 | None:intergenic | 35.0% |
| TTTCAAATGATAGGGACATG+TGG | - | chr7_3:38349193-38349212 | Msa1103170:CDS | 35.0% | |
| TTCAAATGATAGGGACATGT+GGG | - | chr7_3:38349194-38349213 | Msa1103170:CDS | 35.0% | |
| !!! | CATGTGGGTTTTTAGTTTGA+TGG | - | chr7_3:38349209-38349228 | Msa1103170:CDS | 35.0% |
| !! | GAACTAGTACTGTTGATGAT+TGG | - | chr7_3:38349537-38349556 | Msa1103170:intron | 35.0% |
| AAAGGAAACGGAAATCTTCA+CGG | - | chr7_3:38349777-38349796 | Msa1103170:CDS | 35.0% | |
| !! | GCAAAGTTGTTGGTTTCTAA+AGG | - | chr7_3:38349811-38349830 | Msa1103170:intron | 35.0% |
| CATCTAATAACTCATGGTTG+TGG | + | chr7_3:38349876-38349895 | None:intergenic | 35.0% | |
| AATTGGGATGTTACGATAAG+CGG | + | chr7_3:38349920-38349939 | None:intergenic | 35.0% | |
| !! | TACCATTTTTGTGAGTAGGT+TGG | - | chr7_3:38350040-38350059 | Msa1103170:intron | 35.0% |
| GTCAAAATTAGACATCAAGC+AGG | - | chr7_3:38350070-38350089 | Msa1103170:CDS | 35.0% | |
| ! | TAGGACAACTTTTCCTATTG+AGG | - | chr7_3:38350135-38350154 | Msa1103170:CDS | 35.0% |
| TGGATTAACTCAAACGCATA+TGG | + | chr7_3:38350184-38350203 | None:intergenic | 35.0% | |
| ! | TTTTACAAGTAGCACTCGAA+TGG | + | chr7_3:38350379-38350398 | None:intergenic | 35.0% |
| ! | TGACTATGTGACTGCATTTT+GGG | + | chr7_3:38350464-38350483 | None:intergenic | 35.0% |
| ! | TTGACTATGTGACTGCATTT+TGG | + | chr7_3:38350465-38350484 | None:intergenic | 35.0% |
| TCAGTCTCTAATTCGATGTT+TGG | - | chr7_3:38350512-38350531 | Msa1103170:intron | 35.0% | |
| ! | CCATCATTATTTGGAACATC+GGG | + | chr7_3:38350663-38350682 | None:intergenic | 35.0% |
| !!! | CCTTTGGATTTTGAAACAAC+AGG | + | chr7_3:38350702-38350721 | None:intergenic | 35.0% |
| !! | CCTGTTGTTTCAAAATCCAA+AGG | - | chr7_3:38350699-38350718 | Msa1103170:intron | 35.0% |
| TCATCAACAGTACTAGTTCC+AGG | + | chr7_3:38349536-38349555 | None:intergenic | 40.0% | |
| ! | GATGATTGGGTTCCTTTTGA+AGG | - | chr7_3:38349551-38349570 | Msa1103170:intron | 40.0% |
| GAGTCTGAAGATAATCCATC+AGG | - | chr7_3:38349680-38349699 | Msa1103170:CDS | 40.0% | |
| ! | GAATTTGTTTGTCATCGAGC+TGG | - | chr7_3:38349716-38349735 | Msa1103170:CDS | 40.0% |
| AATCTTCACGGTGTAGTTGT+AGG | - | chr7_3:38349789-38349808 | Msa1103170:CDS | 40.0% | |
| GTAGTTGTAGGCAAAGTTGT+TGG | - | chr7_3:38349801-38349820 | Msa1103170:CDS | 40.0% | |
| !! | AGGCTTTGAAATAAAGTGGG+TGG | - | chr7_3:38349831-38349850 | Msa1103170:intron | 40.0% |
| ATTGGGATGTTACGATAAGC+GGG | + | chr7_3:38349919-38349938 | None:intergenic | 40.0% | |
| CACCAACCTACTCACAAAAA+TGG | + | chr7_3:38350045-38350064 | None:intergenic | 40.0% | |
| TTTGCAGCATGTTCCTCAAT+AGG | + | chr7_3:38350151-38350170 | None:intergenic | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | - | chr7_3:38350267-38350286 | Msa1103170:CDS | 40.0% |
| CTTTCTCTTCTCCATCGAAA+AGG | + | chr7_3:38350432-38350451 | None:intergenic | 40.0% | |
| ! | TTTGGAACATCGGGTACATT+GGG | + | chr7_3:38350654-38350673 | None:intergenic | 40.0% |
| ! | ATTTGGAACATCGGGTACAT+TGG | + | chr7_3:38350655-38350674 | None:intergenic | 40.0% |
| CCCGATGTTCCAAATAATGA+TGG | - | chr7_3:38350660-38350679 | Msa1103170:intron | 40.0% | |
| TCATCAACAGTACTAGTTCC+AGG | + | chr7_3:38349536-38349555 | None:intergenic | 40.0% | |
| ! | GATGATTGGGTTCCTTTTGA+AGG | - | chr7_3:38349551-38349570 | Msa1103170:intron | 40.0% |
| GAGTCTGAAGATAATCCATC+AGG | - | chr7_3:38349680-38349699 | Msa1103170:CDS | 40.0% | |
| ! | GAATTTGTTTGTCATCGAGC+TGG | - | chr7_3:38349716-38349735 | Msa1103170:CDS | 40.0% |
| AATCTTCACGGTGTAGTTGT+AGG | - | chr7_3:38349789-38349808 | Msa1103170:CDS | 40.0% | |
| GTAGTTGTAGGCAAAGTTGT+TGG | - | chr7_3:38349801-38349820 | Msa1103170:CDS | 40.0% | |
| !! | AGGCTTTGAAATAAAGTGGG+TGG | - | chr7_3:38349831-38349850 | Msa1103170:intron | 40.0% |
| ATTGGGATGTTACGATAAGC+GGG | + | chr7_3:38349919-38349938 | None:intergenic | 40.0% | |
| CACCAACCTACTCACAAAAA+TGG | + | chr7_3:38350045-38350064 | None:intergenic | 40.0% | |
| TTTGCAGCATGTTCCTCAAT+AGG | + | chr7_3:38350151-38350170 | None:intergenic | 40.0% | |
| !! | CATCATACCAAAGTTGATGG+TGG | - | chr7_3:38350267-38350286 | Msa1103170:CDS | 40.0% |
| CTTTCTCTTCTCCATCGAAA+AGG | + | chr7_3:38350432-38350451 | None:intergenic | 40.0% | |
| ! | TTTGGAACATCGGGTACATT+GGG | + | chr7_3:38350654-38350673 | None:intergenic | 40.0% |
| ! | ATTTGGAACATCGGGTACAT+TGG | + | chr7_3:38350655-38350674 | None:intergenic | 40.0% |
| CCCGATGTTCCAAATAATGA+TGG | - | chr7_3:38350660-38350679 | Msa1103170:intron | 40.0% | |
| CATTTCATGGGACCAATCAC+AGG | - | chr7_3:38349027-38349046 | Msa1103170:CDS | 45.0% | |
| TAGACATCAAGCAGGAGAAG+AGG | - | chr7_3:38350078-38350097 | Msa1103170:CDS | 45.0% | |
| GCGCATCATACCAAAGTTGA+TGG | - | chr7_3:38350264-38350283 | Msa1103170:CDS | 45.0% | |
| TAGACGACCACCATCAACTT+TGG | + | chr7_3:38350277-38350296 | None:intergenic | 45.0% | |
| ! | GCATGCCTTTTATCTGTTGG+AGG | + | chr7_3:38350599-38350618 | None:intergenic | 45.0% |
| ! | CAGGCATGCCTTTTATCTGT+TGG | + | chr7_3:38350602-38350621 | None:intergenic | 45.0% |
| AAATCCAAAGGTCGGCCAAA+AGG | - | chr7_3:38350711-38350730 | Msa1103170:intron | 45.0% | |
| !!! | CCTTTTGGCCTTGAACCTTT+TGG | + | chr7_3:38350729-38350748 | None:intergenic | 45.0% |
| CCAAAAGGTTCAAGGCCAAA+AGG | - | chr7_3:38350726-38350745 | Msa1103170:intron | 45.0% | |
| AAAGGTTCAAGGCCAAAAGG+TGG | - | chr7_3:38350729-38350748 | Msa1103170:intron | 45.0% | |
| ACAATTCCGCGAGTCATGAT+TGG | + | chr7_3:38350808-38350827 | None:intergenic | 45.0% | |
| CATTTCATGGGACCAATCAC+AGG | - | chr7_3:38349027-38349046 | Msa1103170:CDS | 45.0% | |
| TAGACATCAAGCAGGAGAAG+AGG | - | chr7_3:38350078-38350097 | Msa1103170:CDS | 45.0% | |
| GCGCATCATACCAAAGTTGA+TGG | - | chr7_3:38350264-38350283 | Msa1103170:CDS | 45.0% | |
| TAGACGACCACCATCAACTT+TGG | + | chr7_3:38350277-38350296 | None:intergenic | 45.0% | |
| ! | GCATGCCTTTTATCTGTTGG+AGG | + | chr7_3:38350599-38350618 | None:intergenic | 45.0% |
| ! | CAGGCATGCCTTTTATCTGT+TGG | + | chr7_3:38350602-38350621 | None:intergenic | 45.0% |
| AAATCCAAAGGTCGGCCAAA+AGG | - | chr7_3:38350711-38350730 | Msa1103170:intron | 45.0% | |
| !!! | CCTTTTGGCCTTGAACCTTT+TGG | + | chr7_3:38350729-38350748 | None:intergenic | 45.0% |
| CCAAAAGGTTCAAGGCCAAA+AGG | - | chr7_3:38350726-38350745 | Msa1103170:intron | 45.0% | |
| AAAGGTTCAAGGCCAAAAGG+TGG | - | chr7_3:38350729-38350748 | Msa1103170:intron | 45.0% | |
| ACAATTCCGCGAGTCATGAT+TGG | + | chr7_3:38350808-38350827 | None:intergenic | 45.0% | |
| TAGTTCCAGGCTGAGGTTCT+TGG | + | chr7_3:38349523-38349542 | None:intergenic | 50.0% | |
| ACAGTACTAGTTCCAGGCTG+AGG | + | chr7_3:38349530-38349549 | None:intergenic | 50.0% | |
| ATGGTGGTCGTCTAGTAAGC+TGG | - | chr7_3:38350283-38350302 | Msa1103170:CDS | 50.0% | |
| ! | TGAACCTTTTGGCCGACCTT+TGG | + | chr7_3:38350718-38350737 | None:intergenic | 50.0% |
| AAGGTCGGCCAAAAGGTTCA+AGG | - | chr7_3:38350718-38350737 | Msa1103170:intron | 50.0% | |
| ! | GCAGCTTCAACTCCACCTTT+TGG | + | chr7_3:38350744-38350763 | None:intergenic | 50.0% |
| GTGACAACGTCGAAGCTTCT+TGG | + | chr7_3:38350766-38350785 | None:intergenic | 50.0% | |
| CGTTGTCACGTTCCCAATTG+CGG | - | chr7_3:38350777-38350796 | Msa1103170:intron | 50.0% | |
| ! | TGATTGGTTCCGCCGCAATT+GGG | + | chr7_3:38350792-38350811 | None:intergenic | 50.0% |
| ! | ATGATTGGTTCCGCCGCAAT+TGG | + | chr7_3:38350793-38350812 | None:intergenic | 50.0% |
| TAGTTCCAGGCTGAGGTTCT+TGG | + | chr7_3:38349523-38349542 | None:intergenic | 50.0% | |
| ACAGTACTAGTTCCAGGCTG+AGG | + | chr7_3:38349530-38349549 | None:intergenic | 50.0% | |
| ATGGTGGTCGTCTAGTAAGC+TGG | - | chr7_3:38350283-38350302 | Msa1103170:CDS | 50.0% | |
| ! | TGAACCTTTTGGCCGACCTT+TGG | + | chr7_3:38350718-38350737 | None:intergenic | 50.0% |
| AAGGTCGGCCAAAAGGTTCA+AGG | - | chr7_3:38350718-38350737 | Msa1103170:intron | 50.0% | |
| ! | GCAGCTTCAACTCCACCTTT+TGG | + | chr7_3:38350744-38350763 | None:intergenic | 50.0% |
| GTGACAACGTCGAAGCTTCT+TGG | + | chr7_3:38350766-38350785 | None:intergenic | 50.0% | |
| CGTTGTCACGTTCCCAATTG+CGG | - | chr7_3:38350777-38350796 | Msa1103170:intron | 50.0% | |
| ! | TGATTGGTTCCGCCGCAATT+GGG | + | chr7_3:38350792-38350811 | None:intergenic | 50.0% |
| ! | ATGATTGGTTCCGCCGCAAT+TGG | + | chr7_3:38350793-38350812 | None:intergenic | 50.0% |
| TGTCACGTTCCCAATTGCGG+CGG | - | chr7_3:38350780-38350799 | Msa1103170:intron | 55.0% | |
| GCGGAACCAATCATGACTCG+CGG | - | chr7_3:38350799-38350818 | Msa1103170:intron | 55.0% | |
| TGTCACGTTCCCAATTGCGG+CGG | - | chr7_3:38350780-38350799 | Msa1103170:intron | 55.0% | |
| GCGGAACCAATCATGACTCG+CGG | - | chr7_3:38350799-38350818 | Msa1103170:intron | 55.0% | |
| CCAGGCTGAGGTTCTTGGTG+TGG | + | chr7_3:38349518-38349537 | None:intergenic | 60.0% | |
| CCACACCAAGAACCTCAGCC+TGG | - | chr7_3:38349515-38349534 | Msa1103170:intron | 60.0% | |
| CCAGGCTGAGGTTCTTGGTG+TGG | + | chr7_3:38349518-38349537 | None:intergenic | 60.0% | |
| CCACACCAAGAACCTCAGCC+TGG | - | chr7_3:38349515-38349534 | Msa1103170:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 38349007 | 38350875 | 38349007 | ID=Msa1103170;Name=Msa1103170 |
| chr7_3 | mRNA | 38349007 | 38350875 | 38349007 | ID=Msa1103170-mRNA-1;Parent=Msa1103170;Name=Msa1103170-mRNA-1;_AED=0.17;_eAED=0.18;_QI=0|0|0|0.8|0.5|0.6|5|0|409 |
| chr7_3 | exon | 38350834 | 38350875 | 38350834 | ID=Msa1103170-mRNA-1:exon:7826;Parent=Msa1103170-mRNA-1 |
| chr7_3 | exon | 38350067 | 38350433 | 38350067 | ID=Msa1103170-mRNA-1:exon:7825;Parent=Msa1103170-mRNA-1 |
| chr7_3 | exon | 38349898 | 38349989 | 38349898 | ID=Msa1103170-mRNA-1:exon:7824;Parent=Msa1103170-mRNA-1 |
| chr7_3 | exon | 38349604 | 38349824 | 38349604 | ID=Msa1103170-mRNA-1:exon:7823;Parent=Msa1103170-mRNA-1 |
| chr7_3 | exon | 38349007 | 38349511 | 38349007 | ID=Msa1103170-mRNA-1:exon:7822;Parent=Msa1103170-mRNA-1 |
| chr7_3 | CDS | 38350834 | 38350875 | 38350834 | ID=Msa1103170-mRNA-1:cds;Parent=Msa1103170-mRNA-1 |
| chr7_3 | CDS | 38350067 | 38350433 | 38350067 | ID=Msa1103170-mRNA-1:cds;Parent=Msa1103170-mRNA-1 |
| chr7_3 | CDS | 38349898 | 38349989 | 38349898 | ID=Msa1103170-mRNA-1:cds;Parent=Msa1103170-mRNA-1 |
| chr7_3 | CDS | 38349604 | 38349824 | 38349604 | ID=Msa1103170-mRNA-1:cds;Parent=Msa1103170-mRNA-1 |
| chr7_3 | CDS | 38349007 | 38349511 | 38349007 | ID=Msa1103170-mRNA-1:cds;Parent=Msa1103170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
