Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103230 | RHN45605.1 | 87.594 | 266 | 33 | 0 | 6 | 271 | 85 | 350 | 3.56e-167 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103230 | sp|Q9LVW4|MY118_ARATH | 51.020 | 98 | 45 | 2 | 177 | 271 | 143 | 240 | 3.91e-21 | 95.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103230 | A0A396H398 | 87.594 | 266 | 33 | 0 | 6 | 271 | 85 | 350 | 1.70e-167 | 476 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1103230 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103230 | MtrunA17_Chr7g0233161 | 87.594 | 266 | 33 | 0 | 6 | 271 | 85 | 350 | 3.28e-171 | 476 |
| Msa1103230 | MtrunA17_Chr4g0046181 | 69.776 | 268 | 81 | 0 | 4 | 271 | 5 | 272 | 3.73e-121 | 347 |
| Msa1103230 | MtrunA17_Chr7g0228531 | 65.660 | 265 | 90 | 1 | 7 | 271 | 8 | 271 | 1.95e-119 | 348 |
| Msa1103230 | MtrunA17_Chr7g0228481 | 63.774 | 265 | 95 | 1 | 7 | 271 | 8 | 271 | 2.71e-113 | 333 |
| Msa1103230 | MtrunA17_Chr7g0228401 | 43.030 | 330 | 122 | 3 | 4 | 271 | 5 | 330 | 1.78e-75 | 238 |
| Msa1103230 | MtrunA17_Chr7g0233061 | 35.955 | 267 | 122 | 6 | 8 | 271 | 9 | 229 | 1.52e-39 | 140 |
| Msa1103230 | MtrunA17_Chr3g0117511 | 70.690 | 58 | 17 | 0 | 214 | 271 | 177 | 234 | 1.08e-20 | 90.9 |
| Msa1103230 | MtrunA17_Chr3g0104501 | 69.811 | 53 | 16 | 0 | 219 | 271 | 132 | 184 | 2.48e-20 | 86.3 |
| Msa1103230 | MtrunA17_Chr5g0429661 | 67.925 | 53 | 17 | 0 | 219 | 271 | 121 | 173 | 1.26e-19 | 87.0 |
| Msa1103230 | MtrunA17_Chr4g0058991 | 67.925 | 53 | 17 | 0 | 219 | 271 | 208 | 260 | 2.22e-19 | 87.0 |
| Msa1103230 | MtrunA17_Chr7g0238631 | 62.264 | 53 | 20 | 0 | 219 | 271 | 112 | 164 | 7.10e-16 | 77.0 |
| Msa1103230 | MtrunA17_Chr1g0177901 | 69.048 | 42 | 13 | 0 | 230 | 271 | 4 | 45 | 4.05e-15 | 72.4 |
| Msa1103230 | MtrunA17_Chr1g0157731 | 55.769 | 52 | 23 | 0 | 219 | 270 | 90 | 141 | 1.05e-14 | 73.9 |
| Msa1103230 | MtrunA17_Chr3g0133601 | 50.000 | 56 | 28 | 0 | 216 | 271 | 33 | 88 | 1.18e-14 | 71.2 |
| Msa1103230 | MtrunA17_Chr3g0139671 | 57.692 | 52 | 22 | 0 | 219 | 270 | 84 | 135 | 1.56e-14 | 73.6 |
| Msa1103230 | MtrunA17_Chr5g0397841 | 51.613 | 62 | 28 | 1 | 210 | 271 | 102 | 161 | 5.80e-14 | 71.2 |
| Msa1103230 | MtrunA17_Chr5g0401731 | 45.312 | 64 | 35 | 0 | 208 | 271 | 3 | 66 | 1.76e-13 | 69.3 |
| Msa1103230 | MtrunA17_Chr4g0008551 | 50.000 | 54 | 27 | 0 | 218 | 271 | 36 | 89 | 1.09e-12 | 67.0 |
| Msa1103230 | MtrunA17_Chr4g0053431 | 46.429 | 56 | 30 | 0 | 216 | 271 | 1 | 56 | 1.42e-12 | 66.2 |
| Msa1103230 | MtrunA17_Chr5g0437321 | 45.455 | 55 | 30 | 0 | 217 | 271 | 16 | 70 | 4.94e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1103230 | AT3G27785.1 | 51.020 | 98 | 45 | 2 | 177 | 271 | 143 | 240 | 3.98e-22 | 95.5 |
| Msa1103230 | AT4G18770.1 | 73.585 | 53 | 14 | 0 | 219 | 271 | 216 | 268 | 1.19e-21 | 94.0 |
| Msa1103230 | AT5G58850.1 | 39.231 | 130 | 72 | 1 | 142 | 271 | 34 | 156 | 3.11e-20 | 89.7 |
| Msa1103230 | AT5G11050.1 | 65.455 | 55 | 19 | 0 | 217 | 271 | 102 | 156 | 3.09e-19 | 87.0 |
| Msa1103230 | AT5G11510.3 | 59.615 | 52 | 21 | 0 | 219 | 270 | 80 | 131 | 1.34e-16 | 80.1 |
| Msa1103230 | AT5G11510.1 | 59.615 | 52 | 21 | 0 | 219 | 270 | 80 | 131 | 1.34e-16 | 80.1 |
| Msa1103230 | AT5G11510.4 | 59.615 | 52 | 21 | 0 | 219 | 270 | 80 | 131 | 1.34e-16 | 80.1 |
| Msa1103230 | AT5G11510.2 | 59.615 | 52 | 21 | 0 | 219 | 270 | 80 | 131 | 2.28e-16 | 79.3 |
| Msa1103230 | AT5G11510.5 | 59.615 | 52 | 21 | 0 | 219 | 270 | 80 | 131 | 2.41e-16 | 79.0 |
| Msa1103230 | AT5G40360.1 | 61.538 | 52 | 20 | 0 | 220 | 271 | 158 | 209 | 4.18e-16 | 77.4 |
| Msa1103230 | AT3G09370.2 | 61.538 | 52 | 20 | 0 | 219 | 270 | 134 | 185 | 1.58e-15 | 76.6 |
| Msa1103230 | AT3G09370.1 | 61.538 | 52 | 20 | 0 | 219 | 270 | 129 | 180 | 1.63e-15 | 76.3 |
| Msa1103230 | AT3G09370.3 | 61.538 | 52 | 20 | 0 | 219 | 270 | 142 | 193 | 2.31e-15 | 75.9 |
| Msa1103230 | AT5G02320.1 | 58.491 | 53 | 22 | 0 | 219 | 271 | 126 | 178 | 1.56e-14 | 73.6 |
| Msa1103230 | AT5G02320.2 | 58.491 | 53 | 22 | 0 | 219 | 271 | 126 | 178 | 1.56e-14 | 73.6 |
| Msa1103230 | AT5G02320.3 | 58.491 | 53 | 22 | 0 | 219 | 271 | 66 | 118 | 2.20e-14 | 73.2 |
| Msa1103230 | AT4G32730.5 | 51.923 | 52 | 25 | 0 | 219 | 270 | 86 | 137 | 1.70e-13 | 70.9 |
| Msa1103230 | AT4G32730.4 | 51.923 | 52 | 25 | 0 | 219 | 270 | 86 | 137 | 1.70e-13 | 70.9 |
| Msa1103230 | AT4G32730.3 | 51.923 | 52 | 25 | 0 | 219 | 270 | 86 | 137 | 1.70e-13 | 70.9 |
| Msa1103230 | AT4G32730.2 | 51.923 | 52 | 25 | 0 | 219 | 270 | 86 | 137 | 1.70e-13 | 70.9 |
| Msa1103230 | AT4G32730.1 | 51.923 | 52 | 25 | 0 | 219 | 270 | 86 | 137 | 2.01e-13 | 70.5 |
| Msa1103230 | AT3G55730.1 | 33.333 | 93 | 54 | 1 | 187 | 271 | 15 | 107 | 1.12e-11 | 64.7 |
| Msa1103230 | AT3G09230.1 | 48.148 | 54 | 28 | 0 | 217 | 270 | 52 | 105 | 3.84e-11 | 63.2 |
| Msa1103230 | AT3G50060.1 | 43.636 | 55 | 31 | 0 | 217 | 271 | 3 | 57 | 4.66e-11 | 62.4 |
| Msa1103230 | AT2G23290.1 | 45.763 | 59 | 32 | 0 | 213 | 271 | 6 | 64 | 6.07e-11 | 62.0 |
| Msa1103230 | AT4G37260.1 | 45.763 | 59 | 32 | 0 | 213 | 271 | 6 | 64 | 6.93e-11 | 62.0 |
Find 76 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAACACTAGCAAAGGAATT+TGG | 0.146907 | 7_3:-38678615 | Msa1103230:CDS |
| GTATGACTTCCATCTTATTA+TGG | 0.228235 | 7_3:+38678647 | None:intergenic |
| TAAGTTGATTGCATTGATTT+TGG | 0.242609 | 7_3:+38678839 | None:intergenic |
| GAATCCTCTTCAGCCGCTTT+TGG | 0.249031 | 7_3:+38678398 | None:intergenic |
| TCCAATTGGTGGATCACTTT+GGG | 0.286919 | 7_3:-38678149 | Msa1103230:CDS |
| CTTTCATGCAATGATGGAAT+TGG | 0.295338 | 7_3:-38678463 | Msa1103230:CDS |
| ACTTCCATCTTATTATGGTT+TGG | 0.326900 | 7_3:+38678652 | None:intergenic |
| TAACACTAGCAAAGGAATTT+GGG | 0.340692 | 7_3:-38678614 | Msa1103230:CDS |
| TAGTTGAGAAGGAACCATTA+TGG | 0.347091 | 7_3:+38678909 | None:intergenic |
| AATGAATATGGGCCGTTTGA+TGG | 0.356823 | 7_3:-38679141 | None:intergenic |
| TTGCAGGGTTCTTGTCCAAT+TGG | 0.370017 | 7_3:-38678163 | Msa1103230:intron |
| AGTTGAGAAGGAACCATTAT+GGG | 0.394668 | 7_3:+38678910 | None:intergenic |
| CCATCTTCGACCAGACATTA+AGG | 0.396221 | 7_3:-38678052 | None:intergenic |
| TGGTTTGGTGCAAAGATCAT+TGG | 0.405502 | 7_3:+38678667 | None:intergenic |
| TTTCATAAACTTAGCAATAC+AGG | 0.405950 | 7_3:+38678113 | None:intergenic |
| GGGATCCCTGATTTCGCATA+AGG | 0.408310 | 7_3:+38678931 | None:intergenic |
| TCAAAGGGAATGGGCTGATG+GGG | 0.411945 | 7_3:+38678758 | None:intergenic |
| CAGGGTTCTTGTCCAATTGG+TGG | 0.414077 | 7_3:-38678160 | Msa1103230:CDS |
| AAGTTTATGAAAGGCAGAAC+TGG | 0.415305 | 7_3:-38678102 | Msa1103230:CDS |
| GGAAAATCCCTTGAAAGATA+AGG | 0.418787 | 7_3:+38678961 | None:intergenic |
| GTCCAATTGGTGGATCACTT+TGG | 0.421631 | 7_3:-38678150 | Msa1103230:CDS |
| ATCACTTTGGGCTAAGAAAA+TGG | 0.428054 | 7_3:-38678137 | Msa1103230:CDS |
| GAAATCAGGGATCCCCATAA+TGG | 0.435148 | 7_3:-38678923 | Msa1103230:CDS |
| AAATCAATGCAATCAACTTA+AGG | 0.438416 | 7_3:-38678836 | Msa1103230:CDS |
| TCAATTAATCCTGAGCTTCA+AGG | 0.447008 | 7_3:-38678490 | Msa1103230:CDS |
| GAAAGATCTCCTTGAAGCTC+AGG | 0.449302 | 7_3:+38678481 | None:intergenic |
| TACCGATGGGTTGGGATCAA+AGG | 0.460025 | 7_3:+38678742 | None:intergenic |
| GCCCAAAGTGATCCACCAAT+TGG | 0.461579 | 7_3:+38678148 | None:intergenic |
| ATCAAAGGGAATGGGCTGAT+GGG | 0.471371 | 7_3:+38678757 | None:intergenic |
| CAAGGATCTCAATCAAATCA+AGG | 0.475188 | 7_3:-38678353 | Msa1103230:CDS |
| GATCAAAGGGAATGGGCTGA+TGG | 0.486143 | 7_3:+38678756 | None:intergenic |
| TAGCCTTGTACCGATGGGTT+GGG | 0.487014 | 7_3:+38678734 | None:intergenic |
| TGGTGAAACTTCACAACCTC+GGG | 0.489214 | 7_3:-38678563 | Msa1103230:CDS |
| TGTAAGTAGCCTTGTACCGA+TGG | 0.496226 | 7_3:+38678728 | None:intergenic |
| GGAGATCTTTCATGCAATGA+TGG | 0.500133 | 7_3:-38678469 | Msa1103230:CDS |
| TAAGGAACATCCTTTGAATG+AGG | 0.504222 | 7_3:-38678818 | Msa1103230:CDS |
| CAAAGGGAATGGGCTGATGG+GGG | 0.505154 | 7_3:+38678759 | None:intergenic |
| ATAATGGTTCCTTCTCAACT+AGG | 0.506235 | 7_3:-38678907 | Msa1103230:CDS |
| AAGAATGAGACCTTAATGTC+TGG | 0.513472 | 7_3:+38678042 | None:intergenic |
| ACCGATGGGTTGGGATCAAA+GGG | 0.517315 | 7_3:+38678743 | None:intergenic |
| ATTGATGTTATACCATCAAA+CGG | 0.524656 | 7_3:+38679129 | None:intergenic |
| GATCCCAACCCATCGGTACA+AGG | 0.525099 | 7_3:-38678737 | Msa1103230:CDS |
| ACAAGGCTACTTACACCAAT+GGG | 0.528761 | 7_3:-38678720 | Msa1103230:CDS |
| CCTTAATGTCTGGTCGAAGA+TGG | 0.530937 | 7_3:+38678052 | None:intergenic |
| GTGTCCAAAAGCGGCTGAAG+AGG | 0.542775 | 7_3:-38678402 | Msa1103230:CDS |
| TGGGTTGGGATCAAAGGGAA+TGG | 0.546058 | 7_3:+38678748 | None:intergenic |
| TGTATTGCTAAGTTTATGAA+AGG | 0.547549 | 7_3:-38678111 | Msa1103230:CDS |
| AAATCCAGAGAAAATGATCA+AGG | 0.549710 | 7_3:-38678436 | Msa1103230:CDS |
| AGATTTGAACCTAGTTGAGA+AGG | 0.550181 | 7_3:+38678898 | None:intergenic |
| TATGTGGTGTAATGTGATGT+TGG | 0.551218 | 7_3:+38678868 | None:intergenic |
| TGCACCAAACCATAATAAGA+TGG | 0.552990 | 7_3:-38678656 | Msa1103230:CDS |
| TACAAGGCTACTTACACCAA+TGG | 0.554628 | 7_3:-38678721 | Msa1103230:CDS |
| AAAATCCTTATGCGAAATCA+GGG | 0.555864 | 7_3:-38678936 | Msa1103230:CDS |
| GGGTTGGGATCAAAGGGAAT+GGG | 0.559427 | 7_3:+38678749 | None:intergenic |
| AAATTCTCTCTGATACCCAT+TGG | 0.560239 | 7_3:+38678705 | None:intergenic |
| GTAGCCTTGTACCGATGGGT+TGG | 0.569240 | 7_3:+38678733 | None:intergenic |
| TCAATCAAATCAAGGGACAA+TGG | 0.573893 | 7_3:-38678345 | Msa1103230:CDS |
| GCTAGTGATGGTGATGGAGA+GGG | 0.580879 | 7_3:+38678535 | None:intergenic |
| TCCCTTTGATCCCAACCCAT+CGG | 0.582216 | 7_3:-38678744 | Msa1103230:CDS |
| AGCTAGTGATGGTGATGGAG+AGG | 0.591064 | 7_3:+38678534 | None:intergenic |
| GAAAACAGTGCAGAGAGAGA+TGG | 0.592975 | 7_3:-38678080 | Msa1103230:CDS |
| GGTCGTCTTAACACTAGCAA+AGG | 0.596222 | 7_3:-38678622 | Msa1103230:CDS |
| AAGGATCTCAATCAAATCAA+GGG | 0.611928 | 7_3:-38678352 | Msa1103230:CDS |
| GGGACAATGGACTTCAAATG+AGG | 0.612328 | 7_3:-38678332 | Msa1103230:CDS |
| AATAAGATGGAAGTCATACA+TGG | 0.614721 | 7_3:-38678643 | Msa1103230:CDS |
| TGATGGTTAACCTCATTCAA+AGG | 0.620174 | 7_3:+38678808 | None:intergenic |
| ATGGTGAAACTTCACAACCT+CGG | 0.620631 | 7_3:-38678564 | Msa1103230:CDS |
| GTGGTGTAATGTGATGTTGG+AGG | 0.633563 | 7_3:+38678871 | None:intergenic |
| TCATAAGCTAGTGATGGTGA+TGG | 0.640944 | 7_3:+38678529 | None:intergenic |
| AATGGACTTCAAATGAGGAT+CGG | 0.644601 | 7_3:-38678327 | Msa1103230:intron |
| TCGTGCTCAGTGTCCAAAAG+CGG | 0.654264 | 7_3:-38678411 | Msa1103230:CDS |
| GAATAATGAAATTCAACACA+AGG | 0.657330 | 7_3:-38678371 | Msa1103230:CDS |
| GTTGAGAAGGAACCATTATG+GGG | 0.664385 | 7_3:+38678911 | None:intergenic |
| GTAAGTAGCCTTGTACCGAT+GGG | 0.696279 | 7_3:+38678729 | None:intergenic |
| TGTGCATCATAAGCTAGTGA+TGG | 0.698578 | 7_3:+38678523 | None:intergenic |
| GATGGAGAGGGACTTACCCG+AGG | 0.705163 | 7_3:+38678547 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTTTATATTTTTGC+AGG | - | chr7_3:38679008-38679027 | Msa1103230:intron | 10.0% |
| !!! | AATTATTTTATATTTTTGCA+GGG | - | chr7_3:38679009-38679028 | Msa1103230:intron | 10.0% |
| !!! | TAATTATTTTATATTTTTGC+AGG | - | chr7_3:38679008-38679027 | Msa1103230:intron | 10.0% |
| !!! | AATTATTTTATATTTTTGCA+GGG | - | chr7_3:38679009-38679028 | Msa1103230:intron | 10.0% |
| !! | ACAAAAAATTTCTTTCAATA+TGG | - | chr7_3:38678604-38678623 | Msa1103230:CDS | 15.0% |
| !! | ACAAAAAATTTCTTTCAATA+TGG | - | chr7_3:38678604-38678623 | Msa1103230:CDS | 15.0% |
| !! | AAAAAATTCCTTATCTTTCA+AGG | - | chr7_3:38678218-38678237 | Msa1103230:intron | 20.0% |
| !! | AAAAATTCCTTATCTTTCAA+GGG | - | chr7_3:38678219-38678238 | Msa1103230:intron | 20.0% |
| !! | AAAAAATTCCTTATCTTTCA+AGG | - | chr7_3:38678218-38678237 | Msa1103230:intron | 20.0% |
| !! | AAAAATTCCTTATCTTTCAA+GGG | - | chr7_3:38678219-38678238 | Msa1103230:intron | 20.0% |
| ! | ATTGATGTTATACCATCAAA+CGG | + | chr7_3:38678061-38678080 | None:intergenic | 25.0% |
| !!! | TTGATTTTGGTACAAATATG+TGG | + | chr7_3:38678338-38678357 | None:intergenic | 25.0% |
| !!! | TAAGTTGATTGCATTGATTT+TGG | + | chr7_3:38678351-38678370 | None:intergenic | 25.0% |
| ! | AAATCAATGCAATCAACTTA+AGG | - | chr7_3:38678351-38678370 | Msa1103230:CDS | 25.0% |
| ! | GAATAATGAAATTCAACACA+AGG | - | chr7_3:38678816-38678835 | Msa1103230:CDS | 25.0% |
| ! | TTTCATAAACTTAGCAATAC+AGG | + | chr7_3:38679077-38679096 | None:intergenic | 25.0% |
| ! | TGTATTGCTAAGTTTATGAA+AGG | - | chr7_3:38679076-38679095 | Msa1103230:intron | 25.0% |
| ! | ATTGATGTTATACCATCAAA+CGG | + | chr7_3:38678061-38678080 | None:intergenic | 25.0% |
| !!! | TTGATTTTGGTACAAATATG+TGG | + | chr7_3:38678338-38678357 | None:intergenic | 25.0% |
| !!! | TAAGTTGATTGCATTGATTT+TGG | + | chr7_3:38678351-38678370 | None:intergenic | 25.0% |
| ! | AAATCAATGCAATCAACTTA+AGG | - | chr7_3:38678351-38678370 | Msa1103230:CDS | 25.0% |
| ! | GAATAATGAAATTCAACACA+AGG | - | chr7_3:38678816-38678835 | Msa1103230:CDS | 25.0% |
| ! | TTTCATAAACTTAGCAATAC+AGG | + | chr7_3:38679077-38679096 | None:intergenic | 25.0% |
| ! | TGTATTGCTAAGTTTATGAA+AGG | - | chr7_3:38679076-38679095 | Msa1103230:intron | 25.0% |
| !!! | AGGAATTTTTTCTGCAAACT+AGG | + | chr7_3:38678209-38678228 | None:intergenic | 30.0% |
| ! | GATTTCGCATAAGGATTTTT+AGG | + | chr7_3:38678250-38678269 | None:intergenic | 30.0% |
| AAAAATCCTTATGCGAAATC+AGG | - | chr7_3:38678250-38678269 | Msa1103230:intron | 30.0% | |
| AAAATCCTTATGCGAAATCA+GGG | - | chr7_3:38678251-38678270 | Msa1103230:intron | 30.0% | |
| ACTTCCATCTTATTATGGTT+TGG | + | chr7_3:38678538-38678557 | None:intergenic | 30.0% | |
| GTATGACTTCCATCTTATTA+TGG | + | chr7_3:38678543-38678562 | None:intergenic | 30.0% | |
| AATAAGATGGAAGTCATACA+TGG | - | chr7_3:38678544-38678563 | Msa1103230:CDS | 30.0% | |
| TTAACACTAGCAAAGGAATT+TGG | - | chr7_3:38678572-38678591 | Msa1103230:CDS | 30.0% | |
| TAACACTAGCAAAGGAATTT+GGG | - | chr7_3:38678573-38678592 | Msa1103230:CDS | 30.0% | |
| AAATCCAGAGAAAATGATCA+AGG | - | chr7_3:38678751-38678770 | Msa1103230:CDS | 30.0% | |
| AAGGATCTCAATCAAATCAA+GGG | - | chr7_3:38678835-38678854 | Msa1103230:CDS | 30.0% | |
| !!! | AGGAATTTTTTCTGCAAACT+AGG | + | chr7_3:38678209-38678228 | None:intergenic | 30.0% |
| ! | GATTTCGCATAAGGATTTTT+AGG | + | chr7_3:38678250-38678269 | None:intergenic | 30.0% |
| AAAAATCCTTATGCGAAATC+AGG | - | chr7_3:38678250-38678269 | Msa1103230:intron | 30.0% | |
| AAAATCCTTATGCGAAATCA+GGG | - | chr7_3:38678251-38678270 | Msa1103230:intron | 30.0% | |
| ACTTCCATCTTATTATGGTT+TGG | + | chr7_3:38678538-38678557 | None:intergenic | 30.0% | |
| GTATGACTTCCATCTTATTA+TGG | + | chr7_3:38678543-38678562 | None:intergenic | 30.0% | |
| AATAAGATGGAAGTCATACA+TGG | - | chr7_3:38678544-38678563 | Msa1103230:CDS | 30.0% | |
| TTAACACTAGCAAAGGAATT+TGG | - | chr7_3:38678572-38678591 | Msa1103230:CDS | 30.0% | |
| TAACACTAGCAAAGGAATTT+GGG | - | chr7_3:38678573-38678592 | Msa1103230:CDS | 30.0% | |
| AAATCCAGAGAAAATGATCA+AGG | - | chr7_3:38678751-38678770 | Msa1103230:CDS | 30.0% | |
| AAGGATCTCAATCAAATCAA+GGG | - | chr7_3:38678835-38678854 | Msa1103230:CDS | 30.0% | |
| GGAAAATCCCTTGAAAGATA+AGG | + | chr7_3:38678229-38678248 | None:intergenic | 35.0% | |
| AGTTGAGAAGGAACCATTAT+GGG | + | chr7_3:38678280-38678299 | None:intergenic | 35.0% | |
| TAGTTGAGAAGGAACCATTA+TGG | + | chr7_3:38678281-38678300 | None:intergenic | 35.0% | |
| ATAATGGTTCCTTCTCAACT+AGG | - | chr7_3:38678280-38678299 | Msa1103230:intron | 35.0% | |
| AGATTTGAACCTAGTTGAGA+AGG | + | chr7_3:38678292-38678311 | None:intergenic | 35.0% | |
| TATGTGGTGTAATGTGATGT+TGG | + | chr7_3:38678322-38678341 | None:intergenic | 35.0% | |
| TAAGGAACATCCTTTGAATG+AGG | - | chr7_3:38678369-38678388 | Msa1103230:CDS | 35.0% | |
| TGATGGTTAACCTCATTCAA+AGG | + | chr7_3:38678382-38678401 | None:intergenic | 35.0% | |
| TTGCAGAAAAACTAGAGTGA+TGG | + | chr7_3:38678399-38678418 | None:intergenic | 35.0% | |
| !!! | TCACTCTAGTTTTTCTGCAA+TGG | - | chr7_3:38678399-38678418 | Msa1103230:CDS | 35.0% |
| AAATTCTCTCTGATACCCAT+TGG | + | chr7_3:38678485-38678504 | None:intergenic | 35.0% | |
| TGCACCAAACCATAATAAGA+TGG | - | chr7_3:38678531-38678550 | Msa1103230:CDS | 35.0% | |
| TCAATTAATCCTGAGCTTCA+AGG | - | chr7_3:38678697-38678716 | Msa1103230:CDS | 35.0% | |
| ! | CTTTCATGCAATGATGGAAT+TGG | - | chr7_3:38678724-38678743 | Msa1103230:CDS | 35.0% |
| ! | GAATCCTTGATCATTTTCTC+TGG | + | chr7_3:38678758-38678777 | None:intergenic | 35.0% |
| CAAGGATCTCAATCAAATCA+AGG | - | chr7_3:38678834-38678853 | Msa1103230:CDS | 35.0% | |
| TCAATCAAATCAAGGGACAA+TGG | - | chr7_3:38678842-38678861 | Msa1103230:CDS | 35.0% | |
| ! | AATGGACTTCAAATGAGGAT+CGG | - | chr7_3:38678860-38678879 | Msa1103230:CDS | 35.0% |
| ATCACTTTGGGCTAAGAAAA+TGG | - | chr7_3:38679050-38679069 | Msa1103230:intron | 35.0% | |
| AAGTTTATGAAAGGCAGAAC+TGG | - | chr7_3:38679085-38679104 | Msa1103230:intron | 35.0% | |
| GGAAAATCCCTTGAAAGATA+AGG | + | chr7_3:38678229-38678248 | None:intergenic | 35.0% | |
| AGTTGAGAAGGAACCATTAT+GGG | + | chr7_3:38678280-38678299 | None:intergenic | 35.0% | |
| TAGTTGAGAAGGAACCATTA+TGG | + | chr7_3:38678281-38678300 | None:intergenic | 35.0% | |
| ATAATGGTTCCTTCTCAACT+AGG | - | chr7_3:38678280-38678299 | Msa1103230:intron | 35.0% | |
| AGATTTGAACCTAGTTGAGA+AGG | + | chr7_3:38678292-38678311 | None:intergenic | 35.0% | |
| TATGTGGTGTAATGTGATGT+TGG | + | chr7_3:38678322-38678341 | None:intergenic | 35.0% | |
| TAAGGAACATCCTTTGAATG+AGG | - | chr7_3:38678369-38678388 | Msa1103230:CDS | 35.0% | |
| TGATGGTTAACCTCATTCAA+AGG | + | chr7_3:38678382-38678401 | None:intergenic | 35.0% | |
| TTGCAGAAAAACTAGAGTGA+TGG | + | chr7_3:38678399-38678418 | None:intergenic | 35.0% | |
| !!! | TCACTCTAGTTTTTCTGCAA+TGG | - | chr7_3:38678399-38678418 | Msa1103230:CDS | 35.0% |
| AAATTCTCTCTGATACCCAT+TGG | + | chr7_3:38678485-38678504 | None:intergenic | 35.0% | |
| TGCACCAAACCATAATAAGA+TGG | - | chr7_3:38678531-38678550 | Msa1103230:CDS | 35.0% | |
| TCAATTAATCCTGAGCTTCA+AGG | - | chr7_3:38678697-38678716 | Msa1103230:CDS | 35.0% | |
| ! | CTTTCATGCAATGATGGAAT+TGG | - | chr7_3:38678724-38678743 | Msa1103230:CDS | 35.0% |
| ! | GAATCCTTGATCATTTTCTC+TGG | + | chr7_3:38678758-38678777 | None:intergenic | 35.0% |
| CAAGGATCTCAATCAAATCA+AGG | - | chr7_3:38678834-38678853 | Msa1103230:CDS | 35.0% | |
| TCAATCAAATCAAGGGACAA+TGG | - | chr7_3:38678842-38678861 | Msa1103230:CDS | 35.0% | |
| ! | AATGGACTTCAAATGAGGAT+CGG | - | chr7_3:38678860-38678879 | Msa1103230:CDS | 35.0% |
| ATCACTTTGGGCTAAGAAAA+TGG | - | chr7_3:38679050-38679069 | Msa1103230:intron | 35.0% | |
| AAGTTTATGAAAGGCAGAAC+TGG | - | chr7_3:38679085-38679104 | Msa1103230:intron | 35.0% | |
| AGAGTTTCTTGTACGAGAGT+GGG | + | chr7_3:38678148-38678167 | None:intergenic | 40.0% | |
| GTTGAGAAGGAACCATTATG+GGG | + | chr7_3:38678279-38678298 | None:intergenic | 40.0% | |
| TACAAGGCTACTTACACCAA+TGG | - | chr7_3:38678466-38678485 | Msa1103230:CDS | 40.0% | |
| ACAAGGCTACTTACACCAAT+GGG | - | chr7_3:38678467-38678486 | Msa1103230:CDS | 40.0% | |
| !! | TGGTTTGGTGCAAAGATCAT+TGG | + | chr7_3:38678523-38678542 | None:intergenic | 40.0% |
| ATGGTGAAACTTCACAACCT+CGG | - | chr7_3:38678623-38678642 | Msa1103230:CDS | 40.0% | |
| ! | TCATAAGCTAGTGATGGTGA+TGG | + | chr7_3:38678661-38678680 | None:intergenic | 40.0% |
| TGTGCATCATAAGCTAGTGA+TGG | + | chr7_3:38678667-38678686 | None:intergenic | 40.0% | |
| GGAGATCTTTCATGCAATGA+TGG | - | chr7_3:38678718-38678737 | Msa1103230:CDS | 40.0% | |
| ! | TCCAATTGGTGGATCACTTT+GGG | - | chr7_3:38679038-38679057 | Msa1103230:intron | 40.0% |
| AGAGTTTCTTGTACGAGAGT+GGG | + | chr7_3:38678148-38678167 | None:intergenic | 40.0% | |
| GTTGAGAAGGAACCATTATG+GGG | + | chr7_3:38678279-38678298 | None:intergenic | 40.0% | |
| TACAAGGCTACTTACACCAA+TGG | - | chr7_3:38678466-38678485 | Msa1103230:CDS | 40.0% | |
| ACAAGGCTACTTACACCAAT+GGG | - | chr7_3:38678467-38678486 | Msa1103230:CDS | 40.0% | |
| !! | TGGTTTGGTGCAAAGATCAT+TGG | + | chr7_3:38678523-38678542 | None:intergenic | 40.0% |
| ATGGTGAAACTTCACAACCT+CGG | - | chr7_3:38678623-38678642 | Msa1103230:CDS | 40.0% | |
| ! | TCATAAGCTAGTGATGGTGA+TGG | + | chr7_3:38678661-38678680 | None:intergenic | 40.0% |
| TGTGCATCATAAGCTAGTGA+TGG | + | chr7_3:38678667-38678686 | None:intergenic | 40.0% | |
| GGAGATCTTTCATGCAATGA+TGG | - | chr7_3:38678718-38678737 | Msa1103230:CDS | 40.0% | |
| ! | TCCAATTGGTGGATCACTTT+GGG | - | chr7_3:38679038-38679057 | Msa1103230:intron | 40.0% |
| GAGAGTTTCTTGTACGAGAG+TGG | + | chr7_3:38678149-38678168 | None:intergenic | 45.0% | |
| CTCGTACAAGAAACTCTCTC+TGG | - | chr7_3:38678151-38678170 | Msa1103230:CDS | 45.0% | |
| GAAATCAGGGATCCCCATAA+TGG | - | chr7_3:38678264-38678283 | Msa1103230:intron | 45.0% | |
| GTGGTGTAATGTGATGTTGG+AGG | + | chr7_3:38678319-38678338 | None:intergenic | 45.0% | |
| !! | ATCAAAGGGAATGGGCTGAT+GGG | + | chr7_3:38678433-38678452 | None:intergenic | 45.0% |
| !! | GTAAGTAGCCTTGTACCGAT+GGG | + | chr7_3:38678461-38678480 | None:intergenic | 45.0% |
| !! | TGTAAGTAGCCTTGTACCGA+TGG | + | chr7_3:38678462-38678481 | None:intergenic | 45.0% |
| GGTCGTCTTAACACTAGCAA+AGG | - | chr7_3:38678565-38678584 | Msa1103230:CDS | 45.0% | |
| TGGTGAAACTTCACAACCTC+GGG | - | chr7_3:38678624-38678643 | Msa1103230:CDS | 45.0% | |
| GAAAGATCTCCTTGAAGCTC+AGG | + | chr7_3:38678709-38678728 | None:intergenic | 45.0% | |
| ! | GGGACAATGGACTTCAAATG+AGG | - | chr7_3:38678855-38678874 | Msa1103230:CDS | 45.0% |
| TTGCAGGGTTCTTGTCCAAT+TGG | - | chr7_3:38679024-38679043 | Msa1103230:intron | 45.0% | |
| ! | GTCCAATTGGTGGATCACTT+TGG | - | chr7_3:38679037-38679056 | Msa1103230:intron | 45.0% |
| GAAAACAGTGCAGAGAGAGA+TGG | - | chr7_3:38679107-38679126 | Msa1103230:intron | 45.0% | |
| GAGAGTTTCTTGTACGAGAG+TGG | + | chr7_3:38678149-38678168 | None:intergenic | 45.0% | |
| CTCGTACAAGAAACTCTCTC+TGG | - | chr7_3:38678151-38678170 | Msa1103230:CDS | 45.0% | |
| GAAATCAGGGATCCCCATAA+TGG | - | chr7_3:38678264-38678283 | Msa1103230:intron | 45.0% | |
| GTGGTGTAATGTGATGTTGG+AGG | + | chr7_3:38678319-38678338 | None:intergenic | 45.0% | |
| !! | ATCAAAGGGAATGGGCTGAT+GGG | + | chr7_3:38678433-38678452 | None:intergenic | 45.0% |
| !! | GTAAGTAGCCTTGTACCGAT+GGG | + | chr7_3:38678461-38678480 | None:intergenic | 45.0% |
| !! | TGTAAGTAGCCTTGTACCGA+TGG | + | chr7_3:38678462-38678481 | None:intergenic | 45.0% |
| GGTCGTCTTAACACTAGCAA+AGG | - | chr7_3:38678565-38678584 | Msa1103230:CDS | 45.0% | |
| TGGTGAAACTTCACAACCTC+GGG | - | chr7_3:38678624-38678643 | Msa1103230:CDS | 45.0% | |
| GAAAGATCTCCTTGAAGCTC+AGG | + | chr7_3:38678709-38678728 | None:intergenic | 45.0% | |
| ! | GGGACAATGGACTTCAAATG+AGG | - | chr7_3:38678855-38678874 | Msa1103230:CDS | 45.0% |
| TTGCAGGGTTCTTGTCCAAT+TGG | - | chr7_3:38679024-38679043 | Msa1103230:intron | 45.0% | |
| ! | GTCCAATTGGTGGATCACTT+TGG | - | chr7_3:38679037-38679056 | Msa1103230:intron | 45.0% |
| GAAAACAGTGCAGAGAGAGA+TGG | - | chr7_3:38679107-38679126 | Msa1103230:intron | 45.0% | |
| !! | AAAAAAAATAATAATAATCA+AGG | + | chr7_3:38678955-38678974 | None:intergenic | 5.0% |
| !! | AAAAAAAATAATAATAATCA+AGG | + | chr7_3:38678955-38678974 | None:intergenic | 5.0% |
| GGGATCCCTGATTTCGCATA+AGG | + | chr7_3:38678259-38678278 | None:intergenic | 50.0% | |
| !! | TCAAAGGGAATGGGCTGATG+GGG | + | chr7_3:38678432-38678451 | None:intergenic | 50.0% |
| !! | GATCAAAGGGAATGGGCTGA+TGG | + | chr7_3:38678434-38678453 | None:intergenic | 50.0% |
| GGGTTGGGATCAAAGGGAAT+GGG | + | chr7_3:38678441-38678460 | None:intergenic | 50.0% | |
| ! | TGGGTTGGGATCAAAGGGAA+TGG | + | chr7_3:38678442-38678461 | None:intergenic | 50.0% |
| TCCCTTTGATCCCAACCCAT+CGG | - | chr7_3:38678443-38678462 | Msa1103230:CDS | 50.0% | |
| !! | ACCGATGGGTTGGGATCAAA+GGG | + | chr7_3:38678447-38678466 | None:intergenic | 50.0% |
| !! | TACCGATGGGTTGGGATCAA+AGG | + | chr7_3:38678448-38678467 | None:intergenic | 50.0% |
| !! | TAGCCTTGTACCGATGGGTT+GGG | + | chr7_3:38678456-38678475 | None:intergenic | 50.0% |
| !! | GCTAGTGATGGTGATGGAGA+GGG | + | chr7_3:38678655-38678674 | None:intergenic | 50.0% |
| !! | AGCTAGTGATGGTGATGGAG+AGG | + | chr7_3:38678656-38678675 | None:intergenic | 50.0% |
| TCGTGCTCAGTGTCCAAAAG+CGG | - | chr7_3:38678776-38678795 | Msa1103230:CDS | 50.0% | |
| !! | GAATCCTCTTCAGCCGCTTT+TGG | + | chr7_3:38678792-38678811 | None:intergenic | 50.0% |
| CAGGGTTCTTGTCCAATTGG+TGG | - | chr7_3:38679027-38679046 | Msa1103230:intron | 50.0% | |
| GCCCAAAGTGATCCACCAAT+TGG | + | chr7_3:38679042-38679061 | None:intergenic | 50.0% | |
| GGGATCCCTGATTTCGCATA+AGG | + | chr7_3:38678259-38678278 | None:intergenic | 50.0% | |
| !! | TCAAAGGGAATGGGCTGATG+GGG | + | chr7_3:38678432-38678451 | None:intergenic | 50.0% |
| !! | GATCAAAGGGAATGGGCTGA+TGG | + | chr7_3:38678434-38678453 | None:intergenic | 50.0% |
| GGGTTGGGATCAAAGGGAAT+GGG | + | chr7_3:38678441-38678460 | None:intergenic | 50.0% | |
| ! | TGGGTTGGGATCAAAGGGAA+TGG | + | chr7_3:38678442-38678461 | None:intergenic | 50.0% |
| TCCCTTTGATCCCAACCCAT+CGG | - | chr7_3:38678443-38678462 | Msa1103230:CDS | 50.0% | |
| !! | ACCGATGGGTTGGGATCAAA+GGG | + | chr7_3:38678447-38678466 | None:intergenic | 50.0% |
| !! | TACCGATGGGTTGGGATCAA+AGG | + | chr7_3:38678448-38678467 | None:intergenic | 50.0% |
| !! | TAGCCTTGTACCGATGGGTT+GGG | + | chr7_3:38678456-38678475 | None:intergenic | 50.0% |
| !! | GCTAGTGATGGTGATGGAGA+GGG | + | chr7_3:38678655-38678674 | None:intergenic | 50.0% |
| !! | AGCTAGTGATGGTGATGGAG+AGG | + | chr7_3:38678656-38678675 | None:intergenic | 50.0% |
| TCGTGCTCAGTGTCCAAAAG+CGG | - | chr7_3:38678776-38678795 | Msa1103230:CDS | 50.0% | |
| !! | GAATCCTCTTCAGCCGCTTT+TGG | + | chr7_3:38678792-38678811 | None:intergenic | 50.0% |
| CAGGGTTCTTGTCCAATTGG+TGG | - | chr7_3:38679027-38679046 | Msa1103230:intron | 50.0% | |
| GCCCAAAGTGATCCACCAAT+TGG | + | chr7_3:38679042-38679061 | None:intergenic | 50.0% | |
| !! | CAAAGGGAATGGGCTGATGG+GGG | + | chr7_3:38678431-38678450 | None:intergenic | 55.0% |
| GATCCCAACCCATCGGTACA+AGG | - | chr7_3:38678450-38678469 | Msa1103230:CDS | 55.0% | |
| !! | GTAGCCTTGTACCGATGGGT+TGG | + | chr7_3:38678457-38678476 | None:intergenic | 55.0% |
| GTGTCCAAAAGCGGCTGAAG+AGG | - | chr7_3:38678785-38678804 | Msa1103230:CDS | 55.0% | |
| !! | CAAAGGGAATGGGCTGATGG+GGG | + | chr7_3:38678431-38678450 | None:intergenic | 55.0% |
| GATCCCAACCCATCGGTACA+AGG | - | chr7_3:38678450-38678469 | Msa1103230:CDS | 55.0% | |
| !! | GTAGCCTTGTACCGATGGGT+TGG | + | chr7_3:38678457-38678476 | None:intergenic | 55.0% |
| GTGTCCAAAAGCGGCTGAAG+AGG | - | chr7_3:38678785-38678804 | Msa1103230:CDS | 55.0% | |
| GATGGAGAGGGACTTACCCG+AGG | + | chr7_3:38678643-38678662 | None:intergenic | 60.0% | |
| GATGGAGAGGGACTTACCCG+AGG | + | chr7_3:38678643-38678662 | None:intergenic | 60.0% | |
| !! | GGGAATGGGCTGATGGGGGA+AGG | + | chr7_3:38678427-38678446 | None:intergenic | 65.0% |
| !! | GGGAATGGGCTGATGGGGGA+AGG | + | chr7_3:38678427-38678446 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 38678053 | 38679156 | 38678053 | ID=Msa1103230;Name=Msa1103230 |
| chr7_3 | mRNA | 38678053 | 38679156 | 38678053 | ID=Msa1103230-mRNA-1;Parent=Msa1103230;Name=Msa1103230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|0.66|0.5|0.33|3|0|271 |
| chr7_3 | exon | 38679142 | 38679156 | 38679142 | ID=Msa1103230-mRNA-1:exon:7849;Parent=Msa1103230-mRNA-1 |
| chr7_3 | exon | 38678328 | 38678998 | 38678328 | ID=Msa1103230-mRNA-1:exon:7848;Parent=Msa1103230-mRNA-1 |
| chr7_3 | exon | 38678053 | 38678179 | 38678053 | ID=Msa1103230-mRNA-1:exon:7847;Parent=Msa1103230-mRNA-1 |
| chr7_3 | CDS | 38679142 | 38679156 | 38679142 | ID=Msa1103230-mRNA-1:cds;Parent=Msa1103230-mRNA-1 |
| chr7_3 | CDS | 38678328 | 38678998 | 38678328 | ID=Msa1103230-mRNA-1:cds;Parent=Msa1103230-mRNA-1 |
| chr7_3 | CDS | 38678053 | 38678179 | 38678053 | ID=Msa1103230-mRNA-1:cds;Parent=Msa1103230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
