Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1104440 | AES79095.2 | 72.222 | 108 | 15 | 2 | 1 | 108 | 59 | 151 | 1.64e-37 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1104440 | sp|Q9FJK3|AGL80_ARATH | 45.370 | 108 | 56 | 1 | 1 | 105 | 1 | 108 | 2.04e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1104440 | G7L066 | 72.222 | 108 | 15 | 2 | 1 | 108 | 59 | 151 | 7.83e-38 | 134 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1104440 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1104440 | MtrunA17_Chr4g0014321 | 53.153 | 111 | 49 | 1 | 1 | 108 | 1 | 111 | 8.10e-30 | 106 |
| Msa1104440 | MtrunA17_Chr2g0296831 | 58.559 | 111 | 43 | 1 | 1 | 108 | 1 | 111 | 1.98e-29 | 102 |
| Msa1104440 | MtrunA17_Chr8g0351751 | 57.426 | 101 | 38 | 2 | 1 | 96 | 1 | 101 | 2.67e-28 | 102 |
| Msa1104440 | MtrunA17_Chr3g0107381 | 49.074 | 108 | 52 | 1 | 1 | 105 | 1 | 108 | 5.41e-27 | 99.0 |
| Msa1104440 | MtrunA17_Chr4g0013041 | 50.450 | 111 | 50 | 2 | 1 | 108 | 1 | 109 | 1.42e-25 | 95.1 |
| Msa1104440 | MtrunA17_Chr3g0110131 | 54.054 | 111 | 48 | 1 | 1 | 108 | 1 | 111 | 2.28e-25 | 95.1 |
| Msa1104440 | MtrunA17_Chr4g0014031 | 54.955 | 111 | 47 | 1 | 1 | 108 | 1 | 111 | 5.92e-25 | 94.0 |
| Msa1104440 | MtrunA17_Chr3g0107331 | 43.519 | 108 | 58 | 1 | 3 | 107 | 2 | 109 | 1.58e-21 | 83.6 |
| Msa1104440 | MtrunA17_Chr5g0420351 | 42.727 | 110 | 61 | 1 | 1 | 108 | 1 | 110 | 4.50e-21 | 82.0 |
| Msa1104440 | MtrunA17_Chr4g0014131 | 52.252 | 111 | 50 | 1 | 1 | 108 | 1 | 111 | 7.53e-19 | 78.2 |
| Msa1104440 | MtrunA17_Chr3g0107361 | 40.741 | 108 | 61 | 1 | 3 | 107 | 2 | 109 | 5.49e-18 | 74.3 |
| Msa1104440 | MtrunA17_Chr3g0107461 | 37.255 | 102 | 61 | 1 | 1 | 99 | 1 | 102 | 5.55e-18 | 74.3 |
| Msa1104440 | MtrunA17_Chr3g0107341 | 40.741 | 108 | 61 | 1 | 3 | 107 | 2 | 109 | 2.87e-17 | 72.4 |
| Msa1104440 | MtrunA17_Chr3g0107351 | 40.741 | 108 | 61 | 1 | 3 | 107 | 2 | 109 | 2.93e-17 | 72.4 |
| Msa1104440 | MtrunA17_Chr4g0014121 | 50.450 | 111 | 52 | 1 | 1 | 108 | 29 | 139 | 3.02e-17 | 72.8 |
| Msa1104440 | MtrunA17_Chr7g0218151 | 43.119 | 109 | 60 | 1 | 1 | 107 | 1 | 109 | 3.40e-17 | 72.0 |
| Msa1104440 | MtrunA17_Chr1g0188681 | 37.615 | 109 | 66 | 1 | 1 | 107 | 1 | 109 | 3.67e-17 | 72.0 |
| Msa1104440 | MtrunA17_Chr1g0188661 | 42.991 | 107 | 59 | 1 | 1 | 105 | 1 | 107 | 5.58e-17 | 71.6 |
| Msa1104440 | MtrunA17_Chr1g0193311 | 42.727 | 110 | 61 | 1 | 1 | 108 | 1 | 110 | 1.53e-16 | 70.5 |
| Msa1104440 | MtrunA17_Chr5g0432691 | 34.259 | 108 | 68 | 1 | 1 | 105 | 1 | 108 | 5.69e-16 | 68.9 |
| Msa1104440 | MtrunA17_Chr4g0012761 | 41.284 | 109 | 62 | 1 | 1 | 107 | 1 | 109 | 9.65e-16 | 68.6 |
| Msa1104440 | MtrunA17_Chr1g0188651 | 44.545 | 110 | 59 | 1 | 1 | 108 | 1 | 110 | 4.23e-15 | 66.6 |
| Msa1104440 | MtrunA17_Chr2g0283941 | 36.036 | 111 | 64 | 2 | 1 | 104 | 1 | 111 | 6.36e-15 | 67.8 |
| Msa1104440 | MtrunA17_Chr1g0197321 | 35.455 | 110 | 69 | 1 | 1 | 108 | 1 | 110 | 8.66e-15 | 65.9 |
| Msa1104440 | MtrunA17_Chr1g0197261 | 36.111 | 108 | 65 | 2 | 1 | 105 | 1 | 107 | 3.33e-14 | 64.3 |
| Msa1104440 | MtrunA17_Chr1g0197461 | 37.255 | 102 | 60 | 2 | 3 | 101 | 2 | 102 | 6.95e-14 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1104440 | AT3G05860.2 | 38.739 | 111 | 65 | 1 | 1 | 108 | 1 | 111 | 7.46e-20 | 80.5 |
| Msa1104440 | AT3G05860.3 | 38.739 | 111 | 65 | 1 | 1 | 108 | 1 | 111 | 1.68e-19 | 80.5 |
| Msa1104440 | AT3G05860.1 | 38.739 | 111 | 65 | 1 | 1 | 108 | 1 | 111 | 1.92e-19 | 80.5 |
| Msa1104440 | AT5G26630.1 | 47.222 | 108 | 54 | 1 | 1 | 105 | 1 | 108 | 2.26e-19 | 79.3 |
| Msa1104440 | AT5G48670.1 | 45.370 | 108 | 56 | 1 | 1 | 105 | 1 | 108 | 2.08e-18 | 78.6 |
| Msa1104440 | AT1G65330.1 | 38.679 | 106 | 62 | 1 | 3 | 105 | 2 | 107 | 1.39e-17 | 75.9 |
| Msa1104440 | AT1G65300.1 | 38.679 | 106 | 62 | 1 | 5 | 107 | 4 | 109 | 6.22e-17 | 73.9 |
| Msa1104440 | AT5G26650.1 | 34.579 | 107 | 67 | 1 | 4 | 107 | 2 | 108 | 2.32e-14 | 67.8 |
| Msa1104440 | AT5G27960.1 | 36.449 | 107 | 59 | 2 | 5 | 105 | 3 | 106 | 1.48e-13 | 65.1 |
| Msa1104440 | AT5G26580.1 | 31.776 | 107 | 62 | 1 | 1 | 107 | 1 | 96 | 4.74e-13 | 63.9 |
| Msa1104440 | AT1G31630.1 | 28.829 | 111 | 69 | 2 | 3 | 107 | 2 | 108 | 2.78e-12 | 61.6 |
| Msa1104440 | AT5G27810.1 | 38.750 | 80 | 46 | 1 | 29 | 105 | 1 | 80 | 3.27e-12 | 58.5 |
| Msa1104440 | AT2G28700.1 | 31.481 | 108 | 71 | 1 | 1 | 105 | 1 | 108 | 1.80e-11 | 59.3 |
| Msa1104440 | AT1G31640.1 | 30.556 | 108 | 71 | 2 | 3 | 107 | 2 | 108 | 1.83e-11 | 59.7 |
| Msa1104440 | AT2G40210.1 | 34.653 | 101 | 63 | 1 | 1 | 98 | 1 | 101 | 8.14e-11 | 57.8 |
Find 20 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTAGGACTATGACTAAAT+TGG | 0.234565 | 7_3:+41770799 | Msa1104440:intron |
| TATAGTTTATGACCCTTGTC+AGG | 0.364490 | 7_3:+41769847 | Msa1104440:CDS |
| ACCTGCCTCCGCCCCTGACA+AGG | 0.409290 | 7_3:-41769860 | None:intergenic |
| CCCTTGTCAGGGGCGGAGGC+AGG | 0.427654 | 7_3:+41769859 | Msa1104440:CDS |
| ATGACCCTTGTCAGGGGCGG+AGG | 0.447936 | 7_3:+41769855 | Msa1104440:CDS |
| TTACAAAAGTTTGTGGAGGC+AGG | 0.463161 | 7_3:-41769900 | None:intergenic |
| AAGAACAAATGAAGAAACTA+AGG | 0.474135 | 7_3:+41770882 | Msa1104440:CDS |
| CAAAACCATGACTAGAGAAA+AGG | 0.488164 | 7_3:+41769706 | None:intergenic |
| AACATACAAGAAAACGAAGA+AGG | 0.502252 | 7_3:+41769769 | Msa1104440:CDS |
| ATAGTTTATGACCCTTGTCA+GGG | 0.510844 | 7_3:+41769848 | Msa1104440:CDS |
| AGAGACTTTCAAGAAACAAA+GGG | 0.518149 | 7_3:+41770847 | Msa1104440:CDS |
| CCTGCCTCCGCCCCTGACAA+GGG | 0.529289 | 7_3:-41769859 | None:intergenic |
| TGGAGGCAGGTGGCCACACA+AGG | 0.538829 | 7_3:-41769887 | None:intergenic |
| AAGAGACTTTCAAGAAACAA+AGG | 0.547237 | 7_3:+41770846 | Msa1104440:CDS |
| CAAAAGTTTGTGGAGGCAGG+TGG | 0.563413 | 7_3:-41769897 | None:intergenic |
| ACATACAAGAAAACGAAGAA+GGG | 0.616612 | 7_3:+41769770 | Msa1104440:CDS |
| TAGTTTATGACCCTTGTCAG+GGG | 0.630933 | 7_3:+41769849 | Msa1104440:CDS |
| TTTATGACCCTTGTCAGGGG+CGG | 0.641346 | 7_3:+41769852 | Msa1104440:CDS |
| CACTAACTACAATTCTACAA+AGG | 0.644458 | 7_3:-41769823 | None:intergenic |
| GAGGCAGGTAGAGCCTTGTG+TGG | 0.657710 | 7_3:+41769874 | Msa1104440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTAAATTTAAAATAAT+GGG | - | chr7_3:41770632-41770651 | None:intergenic | 0.0% |
| !!! | ATAATTTAAATTTAAAATAA+TGG | - | chr7_3:41770633-41770652 | None:intergenic | 0.0% |
| !!! | TAATTTAAATTTAAAATAAT+GGG | - | chr7_3:41770632-41770651 | None:intergenic | 0.0% |
| !!! | ATAATTTAAATTTAAAATAA+TGG | - | chr7_3:41770633-41770652 | None:intergenic | 0.0% |
| !!! | CTTTTTTTTACAAAAGTTTG+TGG | - | chr7_3:41769910-41769929 | None:intergenic | 20.0% |
| !!! | TTAACATTGAGGAATATTTT+AGG | - | chr7_3:41769993-41770012 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTACAAAAGTTTG+TGG | - | chr7_3:41769910-41769929 | None:intergenic | 20.0% |
| !!! | TTAACATTGAGGAATATTTT+AGG | - | chr7_3:41769993-41770012 | None:intergenic | 20.0% |
| !!! | TTTTTTACAAAAGTTTGTGG+AGG | - | chr7_3:41769907-41769926 | None:intergenic | 25.0% |
| !! | TTCATTAGTTTGGAAGATAA+TGG | - | chr7_3:41769950-41769969 | None:intergenic | 25.0% |
| ! | TTTGCTTATGTTCATTAGTT+TGG | - | chr7_3:41769960-41769979 | None:intergenic | 25.0% |
| ! | ATGAACATAAGCAAACAAAA+TGG | + | chr7_3:41769965-41769984 | Msa1104440:intron | 25.0% |
| ! | ATGTTAACGTGAATTTCAAT+TGG | + | chr7_3:41770006-41770025 | Msa1104440:intron | 25.0% |
| !! | TACATATACTCCCTTTAAAA+TGG | - | chr7_3:41770056-41770075 | None:intergenic | 25.0% |
| ! | TCATAGAGGAAAAAAAAAGA+TGG | + | chr7_3:41770099-41770118 | Msa1104440:intron | 25.0% |
| ! | GACACTTATTAAGGAAAAAA+AGG | - | chr7_3:41770329-41770348 | None:intergenic | 25.0% |
| ! | AAAAAACATGTCATGCTAAT+TGG | - | chr7_3:41770360-41770379 | None:intergenic | 25.0% |
| !!! | GAGAGTTTAGTATGTTTTTT+TGG | - | chr7_3:41770452-41770471 | None:intergenic | 25.0% |
| ! | AGACAAGAATAGATAATAGA+AGG | - | chr7_3:41770503-41770522 | None:intergenic | 25.0% |
| ! | TACCTCTTAGAAAATCATAA+TGG | - | chr7_3:41770565-41770584 | None:intergenic | 25.0% |
| !! | ATTTAGGACTATGACTAAAT+TGG | + | chr7_3:41770799-41770818 | Msa1104440:intron | 25.0% |
| ! | AAGAACAAATGAAGAAACTA+AGG | + | chr7_3:41770882-41770901 | Msa1104440:CDS | 25.0% |
| !!! | TTTTTTACAAAAGTTTGTGG+AGG | - | chr7_3:41769907-41769926 | None:intergenic | 25.0% |
| !! | TTCATTAGTTTGGAAGATAA+TGG | - | chr7_3:41769950-41769969 | None:intergenic | 25.0% |
| ! | TTTGCTTATGTTCATTAGTT+TGG | - | chr7_3:41769960-41769979 | None:intergenic | 25.0% |
| ! | ATGAACATAAGCAAACAAAA+TGG | + | chr7_3:41769965-41769984 | Msa1104440:intron | 25.0% |
| ! | ATGTTAACGTGAATTTCAAT+TGG | + | chr7_3:41770006-41770025 | Msa1104440:intron | 25.0% |
| !! | TACATATACTCCCTTTAAAA+TGG | - | chr7_3:41770056-41770075 | None:intergenic | 25.0% |
| ! | TCATAGAGGAAAAAAAAAGA+TGG | + | chr7_3:41770099-41770118 | Msa1104440:intron | 25.0% |
| ! | GACACTTATTAAGGAAAAAA+AGG | - | chr7_3:41770329-41770348 | None:intergenic | 25.0% |
| ! | AAAAAACATGTCATGCTAAT+TGG | - | chr7_3:41770360-41770379 | None:intergenic | 25.0% |
| !!! | GAGAGTTTAGTATGTTTTTT+TGG | - | chr7_3:41770452-41770471 | None:intergenic | 25.0% |
| ! | AGACAAGAATAGATAATAGA+AGG | - | chr7_3:41770503-41770522 | None:intergenic | 25.0% |
| ! | TACCTCTTAGAAAATCATAA+TGG | - | chr7_3:41770565-41770584 | None:intergenic | 25.0% |
| !! | ATTTAGGACTATGACTAAAT+TGG | + | chr7_3:41770799-41770818 | Msa1104440:intron | 25.0% |
| ! | AAGAACAAATGAAGAAACTA+AGG | + | chr7_3:41770882-41770901 | Msa1104440:CDS | 25.0% |
| AACATACAAGAAAACGAAGA+AGG | + | chr7_3:41769769-41769788 | Msa1104440:CDS | 30.0% | |
| ACATACAAGAAAACGAAGAA+GGG | + | chr7_3:41769770-41769789 | Msa1104440:CDS | 30.0% | |
| CACTAACTACAATTCTACAA+AGG | - | chr7_3:41769826-41769845 | None:intergenic | 30.0% | |
| TGAAATTCACGTTAACATTG+AGG | - | chr7_3:41770004-41770023 | None:intergenic | 30.0% | |
| TTAACGTGAATTTCAATTGG+TGG | + | chr7_3:41770009-41770028 | Msa1104440:intron | 30.0% | |
| !!! | ATACCTCTTGCCATTTTAAA+GGG | + | chr7_3:41770043-41770062 | Msa1104440:intron | 30.0% |
| GAGGAAAAAAAAAGATGGAT+TGG | + | chr7_3:41770104-41770123 | Msa1104440:intron | 30.0% | |
| !!! | GTGTTTTTGGACACTTATTA+AGG | - | chr7_3:41770338-41770357 | None:intergenic | 30.0% |
| CAAGAATAGATAATAGAAGG+AGG | - | chr7_3:41770500-41770519 | None:intergenic | 30.0% | |
| CTCTTAGAAAATCATAATGG+AGG | - | chr7_3:41770562-41770581 | None:intergenic | 30.0% | |
| ! | CTCCATTATGATTTTCTAAG+AGG | + | chr7_3:41770560-41770579 | Msa1104440:intron | 30.0% |
| GATAACTAAATCTCAGGTTA+TGG | - | chr7_3:41770748-41770767 | None:intergenic | 30.0% | |
| AAGAGACTTTCAAGAAACAA+AGG | + | chr7_3:41770846-41770865 | Msa1104440:CDS | 30.0% | |
| AGAGACTTTCAAGAAACAAA+GGG | + | chr7_3:41770847-41770866 | Msa1104440:CDS | 30.0% | |
| AACATACAAGAAAACGAAGA+AGG | + | chr7_3:41769769-41769788 | Msa1104440:CDS | 30.0% | |
| ACATACAAGAAAACGAAGAA+GGG | + | chr7_3:41769770-41769789 | Msa1104440:CDS | 30.0% | |
| CACTAACTACAATTCTACAA+AGG | - | chr7_3:41769826-41769845 | None:intergenic | 30.0% | |
| TGAAATTCACGTTAACATTG+AGG | - | chr7_3:41770004-41770023 | None:intergenic | 30.0% | |
| TTAACGTGAATTTCAATTGG+TGG | + | chr7_3:41770009-41770028 | Msa1104440:intron | 30.0% | |
| !!! | ATACCTCTTGCCATTTTAAA+GGG | + | chr7_3:41770043-41770062 | Msa1104440:intron | 30.0% |
| GAGGAAAAAAAAAGATGGAT+TGG | + | chr7_3:41770104-41770123 | Msa1104440:intron | 30.0% | |
| !!! | GTGTTTTTGGACACTTATTA+AGG | - | chr7_3:41770338-41770357 | None:intergenic | 30.0% |
| CAAGAATAGATAATAGAAGG+AGG | - | chr7_3:41770500-41770519 | None:intergenic | 30.0% | |
| CTCTTAGAAAATCATAATGG+AGG | - | chr7_3:41770562-41770581 | None:intergenic | 30.0% | |
| ! | CTCCATTATGATTTTCTAAG+AGG | + | chr7_3:41770560-41770579 | Msa1104440:intron | 30.0% |
| GATAACTAAATCTCAGGTTA+TGG | - | chr7_3:41770748-41770767 | None:intergenic | 30.0% | |
| AAGAGACTTTCAAGAAACAA+AGG | + | chr7_3:41770846-41770865 | Msa1104440:CDS | 30.0% | |
| AGAGACTTTCAAGAAACAAA+GGG | + | chr7_3:41770847-41770866 | Msa1104440:CDS | 30.0% | |
| TATAGTTTATGACCCTTGTC+AGG | + | chr7_3:41769847-41769866 | Msa1104440:CDS | 35.0% | |
| ATAGTTTATGACCCTTGTCA+GGG | + | chr7_3:41769848-41769867 | Msa1104440:CDS | 35.0% | |
| !!! | GATACCTCTTGCCATTTTAA+AGG | + | chr7_3:41770042-41770061 | Msa1104440:intron | 35.0% |
| !! | GTCATGCTAATTGGTGTTTT+TGG | - | chr7_3:41770351-41770370 | None:intergenic | 35.0% |
| AGGAGAAGAAAAACGAGATT+GGG | - | chr7_3:41770474-41770493 | None:intergenic | 35.0% | |
| AAGGAGAAGAAAAACGAGAT+TGG | - | chr7_3:41770475-41770494 | None:intergenic | 35.0% | |
| TAGATAATAGAAGGAGGAGA+AGG | - | chr7_3:41770494-41770513 | None:intergenic | 35.0% | |
| AGAGTAGAATAAAGGGAGAA+GGG | - | chr7_3:41770534-41770553 | None:intergenic | 35.0% | |
| TAGAGTAGAATAAAGGGAGA+AGG | - | chr7_3:41770535-41770554 | None:intergenic | 35.0% | |
| TTCTCCCTTTATTCTACTCT+AGG | + | chr7_3:41770534-41770553 | Msa1104440:intron | 35.0% | |
| GGAACCTAGAGTAGAATAAA+GGG | - | chr7_3:41770541-41770560 | None:intergenic | 35.0% | |
| AGGAACCTAGAGTAGAATAA+AGG | - | chr7_3:41770542-41770561 | None:intergenic | 35.0% | |
| ACTGGTGATAACTAAATCTC+AGG | - | chr7_3:41770754-41770773 | None:intergenic | 35.0% | |
| !! | GAGGAGTGCTATCAAAATTT+AGG | + | chr7_3:41770783-41770802 | Msa1104440:intron | 35.0% |
| TATAGTTTATGACCCTTGTC+AGG | + | chr7_3:41769847-41769866 | Msa1104440:CDS | 35.0% | |
| ATAGTTTATGACCCTTGTCA+GGG | + | chr7_3:41769848-41769867 | Msa1104440:CDS | 35.0% | |
| !!! | GATACCTCTTGCCATTTTAA+AGG | + | chr7_3:41770042-41770061 | Msa1104440:intron | 35.0% |
| !! | GTCATGCTAATTGGTGTTTT+TGG | - | chr7_3:41770351-41770370 | None:intergenic | 35.0% |
| AGGAGAAGAAAAACGAGATT+GGG | - | chr7_3:41770474-41770493 | None:intergenic | 35.0% | |
| AAGGAGAAGAAAAACGAGAT+TGG | - | chr7_3:41770475-41770494 | None:intergenic | 35.0% | |
| TAGATAATAGAAGGAGGAGA+AGG | - | chr7_3:41770494-41770513 | None:intergenic | 35.0% | |
| AGAGTAGAATAAAGGGAGAA+GGG | - | chr7_3:41770534-41770553 | None:intergenic | 35.0% | |
| TAGAGTAGAATAAAGGGAGA+AGG | - | chr7_3:41770535-41770554 | None:intergenic | 35.0% | |
| TTCTCCCTTTATTCTACTCT+AGG | + | chr7_3:41770534-41770553 | Msa1104440:intron | 35.0% | |
| GGAACCTAGAGTAGAATAAA+GGG | - | chr7_3:41770541-41770560 | None:intergenic | 35.0% | |
| AGGAACCTAGAGTAGAATAA+AGG | - | chr7_3:41770542-41770561 | None:intergenic | 35.0% | |
| ACTGGTGATAACTAAATCTC+AGG | - | chr7_3:41770754-41770773 | None:intergenic | 35.0% | |
| !! | GAGGAGTGCTATCAAAATTT+AGG | + | chr7_3:41770783-41770802 | Msa1104440:intron | 35.0% |
| TAGTTTATGACCCTTGTCAG+GGG | + | chr7_3:41769849-41769868 | Msa1104440:CDS | 40.0% | |
| TTACAAAAGTTTGTGGAGGC+AGG | - | chr7_3:41769903-41769922 | None:intergenic | 40.0% | |
| ! | GTTTGGAAGATAATGGCAAG+AGG | - | chr7_3:41769943-41769962 | None:intergenic | 40.0% |
| !! | ACTCCCTTTAAAATGGCAAG+AGG | - | chr7_3:41770049-41770068 | None:intergenic | 40.0% |
| GACACATATGCACATCATAG+AGG | + | chr7_3:41770085-41770104 | Msa1104440:intron | 40.0% | |
| !!! | GTTTTTTTGGTCGTGAGAGT+GGG | - | chr7_3:41770439-41770458 | None:intergenic | 40.0% |
| !!! | TGTTTTTTTGGTCGTGAGAG+TGG | - | chr7_3:41770440-41770459 | None:intergenic | 40.0% |
| GAGTAGAATAAAGGGAGAAG+GGG | - | chr7_3:41770533-41770552 | None:intergenic | 40.0% | |
| TCTCAGGTTATGGTTCACAA+GGG | - | chr7_3:41770738-41770757 | None:intergenic | 40.0% | |
| ATCTCAGGTTATGGTTCACA+AGG | - | chr7_3:41770739-41770758 | None:intergenic | 40.0% | |
| TATCACCAGTGATATGAGTG+AGG | + | chr7_3:41770764-41770783 | Msa1104440:intron | 40.0% | |
| TAGTTTATGACCCTTGTCAG+GGG | + | chr7_3:41769849-41769868 | Msa1104440:CDS | 40.0% | |
| TTACAAAAGTTTGTGGAGGC+AGG | - | chr7_3:41769903-41769922 | None:intergenic | 40.0% | |
| ! | GTTTGGAAGATAATGGCAAG+AGG | - | chr7_3:41769943-41769962 | None:intergenic | 40.0% |
| !! | ACTCCCTTTAAAATGGCAAG+AGG | - | chr7_3:41770049-41770068 | None:intergenic | 40.0% |
| GACACATATGCACATCATAG+AGG | + | chr7_3:41770085-41770104 | Msa1104440:intron | 40.0% | |
| !!! | GTTTTTTTGGTCGTGAGAGT+GGG | - | chr7_3:41770439-41770458 | None:intergenic | 40.0% |
| !!! | TGTTTTTTTGGTCGTGAGAG+TGG | - | chr7_3:41770440-41770459 | None:intergenic | 40.0% |
| GAGTAGAATAAAGGGAGAAG+GGG | - | chr7_3:41770533-41770552 | None:intergenic | 40.0% | |
| TCTCAGGTTATGGTTCACAA+GGG | - | chr7_3:41770738-41770757 | None:intergenic | 40.0% | |
| ATCTCAGGTTATGGTTCACA+AGG | - | chr7_3:41770739-41770758 | None:intergenic | 40.0% | |
| TATCACCAGTGATATGAGTG+AGG | + | chr7_3:41770764-41770783 | Msa1104440:intron | 40.0% | |
| TTATGGTTCACAAGGGTCAG+TGG | - | chr7_3:41770731-41770750 | None:intergenic | 45.0% | |
| TTATGGTTCACAAGGGTCAG+TGG | - | chr7_3:41770731-41770750 | None:intergenic | 45.0% | |
| TTTATGACCCTTGTCAGGGG+CGG | + | chr7_3:41769852-41769871 | Msa1104440:CDS | 50.0% | |
| CAAAAGTTTGTGGAGGCAGG+TGG | - | chr7_3:41769900-41769919 | None:intergenic | 50.0% | |
| AGCCAGGAATTGTGGACAGT+GGG | - | chr7_3:41770705-41770724 | None:intergenic | 50.0% | |
| GCACTCCTCACTCATATCAC+TGG | - | chr7_3:41770772-41770791 | None:intergenic | 50.0% | |
| TTTATGACCCTTGTCAGGGG+CGG | + | chr7_3:41769852-41769871 | Msa1104440:CDS | 50.0% | |
| CAAAAGTTTGTGGAGGCAGG+TGG | - | chr7_3:41769900-41769919 | None:intergenic | 50.0% | |
| AGCCAGGAATTGTGGACAGT+GGG | - | chr7_3:41770705-41770724 | None:intergenic | 50.0% | |
| GCACTCCTCACTCATATCAC+TGG | - | chr7_3:41770772-41770791 | None:intergenic | 50.0% | |
| CCAGGAATTGTGGACAGTGG+GGG | - | chr7_3:41770703-41770722 | None:intergenic | 55.0% | |
| GCCAGGAATTGTGGACAGTG+GGG | - | chr7_3:41770704-41770723 | None:intergenic | 55.0% | |
| GAGCCAGGAATTGTGGACAG+TGG | - | chr7_3:41770706-41770725 | None:intergenic | 55.0% | |
| TGGTTCACAAGGGTCAGTGG+CGG | - | chr7_3:41770728-41770747 | None:intergenic | 55.0% | |
| CCAGGAATTGTGGACAGTGG+GGG | - | chr7_3:41770703-41770722 | None:intergenic | 55.0% | |
| GCCAGGAATTGTGGACAGTG+GGG | - | chr7_3:41770704-41770723 | None:intergenic | 55.0% | |
| GAGCCAGGAATTGTGGACAG+TGG | - | chr7_3:41770706-41770725 | None:intergenic | 55.0% | |
| TGGTTCACAAGGGTCAGTGG+CGG | - | chr7_3:41770728-41770747 | None:intergenic | 55.0% | |
| ! | GAGGCAGGTAGAGCCTTGTG+TGG | + | chr7_3:41769874-41769893 | Msa1104440:CDS | 60.0% |
| CCCCCACTGTCCACAATTCC+TGG | + | chr7_3:41770700-41770719 | Msa1104440:intron | 60.0% | |
| ! | AGTGGCGGAGCCAGGAATTG+TGG | - | chr7_3:41770713-41770732 | None:intergenic | 60.0% |
| ! | GAGGCAGGTAGAGCCTTGTG+TGG | + | chr7_3:41769874-41769893 | Msa1104440:CDS | 60.0% |
| CCCCCACTGTCCACAATTCC+TGG | + | chr7_3:41770700-41770719 | Msa1104440:intron | 60.0% | |
| ! | AGTGGCGGAGCCAGGAATTG+TGG | - | chr7_3:41770713-41770732 | None:intergenic | 60.0% |
| ATGACCCTTGTCAGGGGCGG+AGG | + | chr7_3:41769855-41769874 | Msa1104440:CDS | 65.0% | |
| TGGAGGCAGGTGGCCACACA+AGG | - | chr7_3:41769890-41769909 | None:intergenic | 65.0% | |
| ATGACCCTTGTCAGGGGCGG+AGG | + | chr7_3:41769855-41769874 | Msa1104440:CDS | 65.0% | |
| TGGAGGCAGGTGGCCACACA+AGG | - | chr7_3:41769890-41769909 | None:intergenic | 65.0% | |
| CCTGCCTCCGCCCCTGACAA+GGG | - | chr7_3:41769862-41769881 | None:intergenic | 70.0% | |
| ACCTGCCTCCGCCCCTGACA+AGG | - | chr7_3:41769863-41769882 | None:intergenic | 70.0% | |
| ! | CAAGGGTCAGTGGCGGAGCC+AGG | - | chr7_3:41770721-41770740 | None:intergenic | 70.0% |
| CCTGCCTCCGCCCCTGACAA+GGG | - | chr7_3:41769862-41769881 | None:intergenic | 70.0% | |
| ACCTGCCTCCGCCCCTGACA+AGG | - | chr7_3:41769863-41769882 | None:intergenic | 70.0% | |
| ! | CAAGGGTCAGTGGCGGAGCC+AGG | - | chr7_3:41770721-41770740 | None:intergenic | 70.0% |
| CCCTTGTCAGGGGCGGAGGC+AGG | + | chr7_3:41769859-41769878 | Msa1104440:CDS | 75.0% | |
| CCCTTGTCAGGGGCGGAGGC+AGG | + | chr7_3:41769859-41769878 | Msa1104440:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 41769713 | 41770925 | 41769713 | ID=Msa1104440;Name=Msa1104440 |
| chr7_3 | mRNA | 41769713 | 41770925 | 41769713 | ID=Msa1104440-mRNA-1;Parent=Msa1104440;Name=Msa1104440-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|1|0|0|2|0|108 |
| chr7_3 | exon | 41769713 | 41769918 | 41769713 | ID=Msa1104440-mRNA-1:exon:8517;Parent=Msa1104440-mRNA-1 |
| chr7_3 | exon | 41770805 | 41770925 | 41770805 | ID=Msa1104440-mRNA-1:exon:8518;Parent=Msa1104440-mRNA-1 |
| chr7_3 | CDS | 41769713 | 41769918 | 41769713 | ID=Msa1104440-mRNA-1:cds;Parent=Msa1104440-mRNA-1 |
| chr7_3 | CDS | 41770805 | 41770925 | 41770805 | ID=Msa1104440-mRNA-1:cds;Parent=Msa1104440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
