AlfalfaGEDB | Msa1104440

M. sativa cultivar zhongmu-4 / Msa1104440

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104440	AES79095.2	72.222	108	15	2	1	108	59	151	1.64e-37	134

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104440	sp\|Q9FJK3\|AGL80_ARATH	45.370	108	56	1	1	105	1	108	2.04e-17	78.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104440	G7L066	72.222	108	15	2	1	108	59	151	7.83e-38	134

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TFs/TRs:

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Gene ID	Type	Classification
Msa1104440	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104440	MtrunA17_Chr4g0014321	53.153	111	49	1	1	108	1	111	8.10e-30	106
Msa1104440	MtrunA17_Chr2g0296831	58.559	111	43	1	1	108	1	111	1.98e-29	102
Msa1104440	MtrunA17_Chr8g0351751	57.426	101	38	2	1	96	1	101	2.67e-28	102
Msa1104440	MtrunA17_Chr3g0107381	49.074	108	52	1	1	105	1	108	5.41e-27	99.0
Msa1104440	MtrunA17_Chr4g0013041	50.450	111	50	2	1	108	1	109	1.42e-25	95.1
Msa1104440	MtrunA17_Chr3g0110131	54.054	111	48	1	1	108	1	111	2.28e-25	95.1
Msa1104440	MtrunA17_Chr4g0014031	54.955	111	47	1	1	108	1	111	5.92e-25	94.0
Msa1104440	MtrunA17_Chr3g0107331	43.519	108	58	1	3	107	2	109	1.58e-21	83.6
Msa1104440	MtrunA17_Chr5g0420351	42.727	110	61	1	1	108	1	110	4.50e-21	82.0
Msa1104440	MtrunA17_Chr4g0014131	52.252	111	50	1	1	108	1	111	7.53e-19	78.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104440	AT3G05860.2	38.739	111	65	1	1	108	1	111	7.46e-20	80.5
Msa1104440	AT3G05860.3	38.739	111	65	1	1	108	1	111	1.68e-19	80.5
Msa1104440	AT3G05860.1	38.739	111	65	1	1	108	1	111	1.92e-19	80.5
Msa1104440	AT5G26630.1	47.222	108	54	1	1	105	1	108	2.26e-19	79.3
Msa1104440	AT5G48670.1	45.370	108	56	1	1	105	1	108	2.08e-18	78.6
Msa1104440	AT1G65330.1	38.679	106	62	1	3	105	2	107	1.39e-17	75.9
Msa1104440	AT1G65300.1	38.679	106	62	1	5	107	4	109	6.22e-17	73.9
Msa1104440	AT5G26650.1	34.579	107	67	1	4	107	2	108	2.32e-14	67.8
Msa1104440	AT5G27960.1	36.449	107	59	2	5	105	3	106	1.48e-13	65.1
Msa1104440	AT5G26580.1	31.776	107	62	1	1	107	1	96	4.74e-13	63.9

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Find 20 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATACAAGAAAACGAAGA+AGG	0.502252	7_3:+41769769	Msa1104440:CDS
AAGAACAAATGAAGAAACTA+AGG	0.474135	7_3:+41770882	Msa1104440:CDS
AAGAGACTTTCAAGAAACAA+AGG	0.547237	7_3:+41770846	Msa1104440:CDS
ACATACAAGAAAACGAAGAA+GGG	0.616612	7_3:+41769770	Msa1104440:CDS
ACCTGCCTCCGCCCCTGACA+AGG	0.409290	7_3:-41769860	None:intergenic
AGAGACTTTCAAGAAACAAA+GGG	0.518149	7_3:+41770847	Msa1104440:CDS
ATAGTTTATGACCCTTGTCA+GGG	0.510844	7_3:+41769848	Msa1104440:CDS
ATGACCCTTGTCAGGGGCGG+AGG	0.447936	7_3:+41769855	Msa1104440:CDS
ATTTAGGACTATGACTAAAT+TGG	0.234565	7_3:+41770799	Msa1104440:intron
CAAAACCATGACTAGAGAAA+AGG	0.488164	7_3:+41769706	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATACAAGAAAACGAAGA+AGG	+	chr7_3:41769769-41769788	Msa1104440:CDS	30.0%
ACATACAAGAAAACGAAGAA+GGG	+	chr7_3:41769770-41769789	Msa1104440:CDS	30.0%
CACTAACTACAATTCTACAA+AGG	-	chr7_3:41769826-41769845	None:intergenic	30.0%
TGAAATTCACGTTAACATTG+AGG	-	chr7_3:41770004-41770023	None:intergenic	30.0%
TTAACGTGAATTTCAATTGG+TGG	+	chr7_3:41770009-41770028	Msa1104440:intron	30.0%
GAGGAAAAAAAAAGATGGAT+TGG	+	chr7_3:41770104-41770123	Msa1104440:intron	30.0%
CAAGAATAGATAATAGAAGG+AGG	-	chr7_3:41770500-41770519	None:intergenic	30.0%
CTCTTAGAAAATCATAATGG+AGG	-	chr7_3:41770562-41770581	None:intergenic	30.0%
GATAACTAAATCTCAGGTTA+TGG	-	chr7_3:41770748-41770767	None:intergenic	30.0%
AAGAGACTTTCAAGAAACAA+AGG	+	chr7_3:41770846-41770865	Msa1104440:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	41769713	41770925	41769713	ID=Msa1104440;Name=Msa1104440
chr7_3	mRNA	41769713	41770925	41769713	ID=Msa1104440-mRNA-1;Parent=Msa1104440;Name=Msa1104440-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|0\|0\|1\|0\|0\|2\|0\|108
chr7_3	exon	41769713	41769918	41769713	ID=Msa1104440-mRNA-1:exon:8517;Parent=Msa1104440-mRNA-1
chr7_3	exon	41770805	41770925	41770805	ID=Msa1104440-mRNA-1:exon:8518;Parent=Msa1104440-mRNA-1
chr7_3	CDS	41769713	41769918	41769713	ID=Msa1104440-mRNA-1:cds;Parent=Msa1104440-mRNA-1
chr7_3	CDS	41770805	41770925	41770805	ID=Msa1104440-mRNA-1:cds;Parent=Msa1104440-mRNA-1

Gene Sequence	>Msa1104440 ATGACTAGAGAAAAGGTAAAACTTGAATTTAATGTAAATGATGCTGCAAGAAAAGCAACATACAAGAAAACGAAGAAGGGTCTGTTGAATAAAGTTGATGAACTAAGCATCCTTTGTAGAATTGTAGTTAGTGCTATAGTTTATGACCCTTGTCAGGGGCGGAGGCAGGTAGAGCCTTGTGTGGCCACCTGCCTCCACAAACTTTTGACTATGACTAAATTGGAGAAGAGCAAGAAAATGATGAATCAAGAGACTTTCAAGAAACAAAGGGTTTTGAAGATTAAAGAACAAATGAAGAAACTAAGGAAAGACAATAGTGATAAATAG
Protein sequence	>Msa1104440 MTREKVKLEFNVNDAARKATYKKTKKGLLNKVDELSILCRIVVSAIVYDPCQGRRQVEPCVATCLHKLLTMTKLEKSKKMMNQETFKKQRVLKIKEQMKKLRKDNSDK*