Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1104770 | XP_039683937.1 | 73.370 | 368 | 98 | 0 | 4 | 371 | 382 | 749 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1104770 | sp|Q9SWG3|FAR1_ARATH | 34.421 | 337 | 212 | 4 | 41 | 368 | 48 | 384 | 1.46e-67 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1104770 | Q2HSZ7 | 74.033 | 362 | 94 | 0 | 10 | 371 | 318 | 679 | 0.0 | 589 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1104770 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1104770 | MtrunA17_Chr2g0296781 | 77.950 | 322 | 71 | 0 | 50 | 371 | 3 | 324 | 0.0 | 560 |
| Msa1104770 | MtrunA17_Chr1g0196541 | 63.043 | 322 | 119 | 0 | 50 | 371 | 3 | 324 | 5.06e-155 | 454 |
| Msa1104770 | MtrunA17_Chr6g0477261 | 83.568 | 213 | 35 | 0 | 159 | 371 | 1 | 213 | 7.78e-136 | 402 |
| Msa1104770 | MtrunA17_Chr5g0441581 | 48.266 | 346 | 167 | 3 | 30 | 371 | 15 | 352 | 1.68e-108 | 333 |
| Msa1104770 | MtrunA17_Chr2g0329031 | 38.838 | 327 | 179 | 5 | 50 | 368 | 20 | 333 | 4.02e-75 | 246 |
| Msa1104770 | MtrunA17_Chr2g0291591 | 36.443 | 343 | 211 | 4 | 20 | 358 | 39 | 378 | 1.47e-73 | 239 |
| Msa1104770 | MtrunA17_Chr5g0448761 | 38.040 | 347 | 196 | 10 | 41 | 370 | 57 | 401 | 1.08e-70 | 236 |
| Msa1104770 | MtrunA17_Chr1g0202341 | 38.485 | 330 | 187 | 6 | 43 | 362 | 50 | 373 | 1.12e-69 | 231 |
| Msa1104770 | MtrunA17_Chr1g0207551 | 36.550 | 342 | 195 | 5 | 41 | 368 | 31 | 364 | 2.27e-68 | 230 |
| Msa1104770 | MtrunA17_Chr2g0291581 | 37.690 | 329 | 193 | 5 | 44 | 371 | 71 | 388 | 3.25e-68 | 227 |
| Msa1104770 | MtrunA17_Chr3g0080351 | 35.207 | 338 | 179 | 5 | 43 | 363 | 75 | 389 | 8.80e-63 | 215 |
| Msa1104770 | MtrunA17_Chr8g0363841 | 36.446 | 332 | 203 | 4 | 40 | 363 | 10 | 341 | 5.35e-62 | 210 |
| Msa1104770 | MtrunA17_Chr2g0324011 | 32.609 | 322 | 209 | 5 | 41 | 356 | 7 | 326 | 2.38e-54 | 188 |
| Msa1104770 | MtrunA17_Chr2g0287651 | 33.131 | 329 | 199 | 6 | 50 | 364 | 81 | 402 | 3.12e-54 | 191 |
| Msa1104770 | MtrunA17_Chr5g0440451 | 33.140 | 344 | 191 | 9 | 43 | 362 | 42 | 370 | 2.12e-51 | 184 |
| Msa1104770 | MtrunA17_Chr1g0198761 | 31.325 | 332 | 205 | 8 | 47 | 359 | 50 | 377 | 6.90e-48 | 173 |
| Msa1104770 | MtrunA17_Chr2g0287061 | 33.333 | 345 | 182 | 9 | 25 | 360 | 163 | 468 | 3.48e-47 | 171 |
| Msa1104770 | MtrunA17_Chr3g0082121 | 34.006 | 347 | 204 | 11 | 20 | 354 | 17 | 350 | 7.63e-47 | 169 |
| Msa1104770 | MtrunA17_Chr1g0203051 | 29.814 | 322 | 213 | 7 | 50 | 362 | 85 | 402 | 7.82e-46 | 166 |
| Msa1104770 | MtrunA17_Chr6g0458391 | 30.925 | 346 | 208 | 9 | 28 | 363 | 207 | 531 | 8.17e-46 | 167 |
| Msa1104770 | MtrunA17_Chr5g0448511 | 44.172 | 163 | 90 | 1 | 201 | 363 | 1 | 162 | 5.87e-45 | 162 |
| Msa1104770 | MtrunA17_Chr3g0118611 | 47.436 | 156 | 82 | 0 | 208 | 363 | 113 | 268 | 6.74e-45 | 164 |
| Msa1104770 | MtrunA17_Chr1g0203721 | 31.304 | 345 | 213 | 8 | 46 | 374 | 65 | 401 | 1.39e-44 | 164 |
| Msa1104770 | MtrunA17_Chr7g0258861 | 32.168 | 286 | 181 | 5 | 41 | 316 | 7 | 289 | 1.61e-44 | 155 |
| Msa1104770 | MtrunA17_Chr2g0276841 | 28.788 | 330 | 217 | 8 | 44 | 359 | 70 | 395 | 4.15e-43 | 159 |
| Msa1104770 | MtrunA17_Chr5g0431001 | 29.586 | 338 | 217 | 8 | 44 | 363 | 61 | 395 | 1.30e-41 | 152 |
| Msa1104770 | MtrunA17_Chr1g0164591 | 37.295 | 244 | 126 | 6 | 122 | 354 | 3 | 230 | 1.68e-40 | 145 |
| Msa1104770 | MtrunA17_Chr2g0294841 | 28.354 | 328 | 220 | 6 | 44 | 357 | 45 | 371 | 3.90e-38 | 145 |
| Msa1104770 | MtrunA17_Chr6g0476431 | 62.791 | 86 | 32 | 0 | 50 | 135 | 3 | 88 | 1.54e-33 | 120 |
| Msa1104770 | MtrunA17_Chr2g0290391 | 25.352 | 355 | 238 | 9 | 44 | 373 | 51 | 403 | 2.01e-30 | 122 |
| Msa1104770 | MtrunA17_Chr6g0451441 | 32.000 | 200 | 126 | 5 | 12 | 205 | 52 | 247 | 1.58e-21 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1104770 | AT4G15090.1 | 34.421 | 337 | 212 | 4 | 41 | 368 | 48 | 384 | 1.49e-68 | 231 |
| Msa1104770 | AT4G15090.5 | 34.421 | 337 | 212 | 4 | 41 | 368 | 48 | 384 | 1.49e-68 | 231 |
| Msa1104770 | AT4G15090.3 | 34.421 | 337 | 212 | 4 | 41 | 368 | 48 | 384 | 1.49e-68 | 231 |
| Msa1104770 | AT4G15090.2 | 34.421 | 337 | 212 | 4 | 41 | 368 | 48 | 384 | 1.49e-68 | 231 |
| Msa1104770 | AT4G15090.4 | 34.421 | 337 | 212 | 4 | 41 | 368 | 48 | 384 | 1.49e-68 | 231 |
| Msa1104770 | AT1G76320.3 | 37.462 | 331 | 181 | 6 | 50 | 369 | 3 | 318 | 2.68e-68 | 228 |
| Msa1104770 | AT1G76320.2 | 37.462 | 331 | 181 | 6 | 50 | 369 | 3 | 318 | 6.54e-68 | 228 |
| Msa1104770 | AT1G76320.1 | 37.462 | 331 | 181 | 6 | 50 | 369 | 3 | 318 | 7.71e-68 | 228 |
| Msa1104770 | AT1G76320.4 | 37.462 | 331 | 181 | 6 | 50 | 369 | 3 | 318 | 7.71e-68 | 228 |
| Msa1104770 | AT4G38180.1 | 34.530 | 362 | 222 | 7 | 22 | 370 | 51 | 410 | 2.60e-66 | 224 |
| Msa1104770 | AT1G80010.1 | 33.742 | 326 | 201 | 7 | 44 | 358 | 95 | 416 | 6.68e-58 | 201 |
| Msa1104770 | AT3G22170.2 | 31.858 | 339 | 192 | 3 | 43 | 364 | 69 | 385 | 3.55e-57 | 200 |
| Msa1104770 | AT3G22170.1 | 31.858 | 339 | 192 | 3 | 43 | 364 | 69 | 385 | 3.55e-57 | 200 |
| Msa1104770 | AT1G52520.1 | 33.596 | 381 | 220 | 10 | 11 | 371 | 37 | 404 | 8.38e-57 | 197 |
| Msa1104770 | AT2G27110.2 | 34.012 | 344 | 195 | 6 | 25 | 363 | 30 | 346 | 2.64e-52 | 186 |
| Msa1104770 | AT2G27110.1 | 34.012 | 344 | 195 | 6 | 25 | 363 | 30 | 346 | 2.64e-52 | 186 |
| Msa1104770 | AT4G19990.5 | 36.527 | 334 | 159 | 10 | 47 | 362 | 24 | 322 | 1.25e-51 | 184 |
| Msa1104770 | AT4G19990.3 | 36.527 | 334 | 159 | 10 | 47 | 362 | 24 | 322 | 1.40e-51 | 183 |
| Msa1104770 | AT4G19990.4 | 36.527 | 334 | 159 | 10 | 47 | 362 | 24 | 322 | 1.40e-51 | 183 |
| Msa1104770 | AT4G19990.6 | 36.527 | 334 | 159 | 10 | 47 | 362 | 24 | 322 | 1.45e-51 | 184 |
| Msa1104770 | AT4G19990.2 | 36.527 | 334 | 159 | 10 | 47 | 362 | 24 | 322 | 1.45e-51 | 184 |
| Msa1104770 | AT4G19990.7 | 36.527 | 334 | 159 | 10 | 47 | 362 | 38 | 336 | 1.47e-51 | 184 |
| Msa1104770 | AT3G06250.2 | 31.707 | 328 | 184 | 8 | 43 | 367 | 189 | 479 | 1.41e-47 | 172 |
| Msa1104770 | AT3G06250.1 | 31.707 | 328 | 184 | 8 | 43 | 367 | 189 | 479 | 1.41e-47 | 172 |
| Msa1104770 | AT3G06250.3 | 31.707 | 328 | 184 | 8 | 43 | 367 | 189 | 479 | 1.41e-47 | 172 |
| Msa1104770 | AT5G18960.2 | 31.889 | 323 | 183 | 8 | 43 | 362 | 210 | 498 | 2.22e-47 | 172 |
| Msa1104770 | AT5G18960.1 | 31.889 | 323 | 183 | 8 | 43 | 362 | 210 | 498 | 2.22e-47 | 172 |
| Msa1104770 | AT2G27110.3 | 39.796 | 196 | 110 | 1 | 168 | 363 | 14 | 201 | 2.53e-46 | 168 |
| Msa1104770 | AT2G32250.5 | 45.890 | 146 | 79 | 0 | 220 | 365 | 176 | 321 | 2.61e-45 | 166 |
| Msa1104770 | AT2G32250.2 | 45.890 | 146 | 79 | 0 | 220 | 365 | 176 | 321 | 2.98e-45 | 166 |
| Msa1104770 | AT2G32250.4 | 45.890 | 146 | 79 | 0 | 220 | 365 | 176 | 321 | 2.98e-45 | 166 |
| Msa1104770 | AT2G32250.6 | 45.890 | 146 | 79 | 0 | 220 | 365 | 176 | 321 | 3.22e-45 | 166 |
| Msa1104770 | AT2G32250.1 | 45.890 | 146 | 79 | 0 | 220 | 365 | 176 | 321 | 3.22e-45 | 166 |
| Msa1104770 | AT2G32250.3 | 45.890 | 146 | 79 | 0 | 220 | 365 | 176 | 321 | 3.22e-45 | 166 |
| Msa1104770 | AT2G32250.8 | 45.890 | 146 | 79 | 0 | 220 | 365 | 135 | 280 | 3.22e-45 | 166 |
| Msa1104770 | AT2G32250.7 | 45.890 | 146 | 79 | 0 | 220 | 365 | 135 | 280 | 3.48e-45 | 166 |
| Msa1104770 | AT4G19990.1 | 37.795 | 254 | 122 | 5 | 110 | 362 | 47 | 265 | 6.13e-45 | 164 |
| Msa1104770 | AT1G10240.2 | 29.275 | 345 | 223 | 11 | 30 | 359 | 35 | 373 | 8.27e-43 | 158 |
| Msa1104770 | AT1G10240.1 | 29.275 | 345 | 223 | 11 | 30 | 359 | 35 | 373 | 8.27e-43 | 158 |
| Msa1104770 | AT5G28530.3 | 27.684 | 354 | 220 | 8 | 44 | 369 | 55 | 400 | 2.44e-36 | 140 |
| Msa1104770 | AT5G28530.2 | 27.684 | 354 | 220 | 8 | 44 | 369 | 55 | 400 | 2.44e-36 | 140 |
| Msa1104770 | AT5G28530.1 | 27.684 | 354 | 220 | 8 | 44 | 369 | 55 | 400 | 2.88e-36 | 140 |
| Msa1104770 | AT4G38170.1 | 45.033 | 151 | 78 | 2 | 214 | 363 | 18 | 164 | 5.92e-36 | 138 |
| Msa1104770 | AT5G28530.5 | 39.535 | 86 | 50 | 1 | 286 | 369 | 252 | 337 | 3.01e-12 | 68.6 |
| Msa1104770 | AT5G28530.4 | 39.535 | 86 | 50 | 1 | 286 | 369 | 252 | 337 | 3.27e-12 | 68.6 |
Find 54 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCATCGATGACGAGCTTT+TGG | 0.216625 | 7_3:-42486897 | None:intergenic |
| CAAGAGTTATGCCCAATCTA+TGG | 0.242427 | 7_3:+42486050 | Msa1104770:CDS |
| AATGCATGTATTTCTTTAGA+TGG | 0.249459 | 7_3:+42486225 | Msa1104770:CDS |
| CTAAAATAGCGTGCTTTGTC+AGG | 0.272247 | 7_3:-42486297 | None:intergenic |
| TATGCCCAATCTATGGGTTT+TGG | 0.292447 | 7_3:+42486057 | Msa1104770:CDS |
| ATTACACATAGACTCGTAAT+TGG | 0.299609 | 7_3:-42486967 | None:intergenic |
| AGGGCTGCATATGAATATTT+TGG | 0.330794 | 7_3:+42486630 | Msa1104770:CDS |
| TGATCGGTAATTATGGCATT+TGG | 0.337887 | 7_3:-42486837 | None:intergenic |
| TTTGTGGCATATAATGAAAA+AGG | 0.344495 | 7_3:+42486920 | Msa1104770:CDS |
| GCATGCACTCTAACCATGTT+TGG | 0.393751 | 7_3:-42486803 | None:intergenic |
| TAACTCCAAAACCCATAGAT+TGG | 0.409903 | 7_3:-42486062 | None:intergenic |
| AAGTGAGGAGACTACGACTT+GGG | 0.414907 | 7_3:+42486478 | Msa1104770:CDS |
| TCATGGCCAATCTGTGTTGT+TGG | 0.420636 | 7_3:+42486731 | Msa1104770:CDS |
| TGATGGTTTACTCCAACAAA+TGG | 0.425908 | 7_3:-42486711 | None:intergenic |
| TCTGTCTTGATCGGTAATTA+TGG | 0.452701 | 7_3:-42486844 | None:intergenic |
| CATTCAATCTAGCCTTGCAC+TGG | 0.454810 | 7_3:-42486206 | None:intergenic |
| AACTCCAAAACCCATAGATT+GGG | 0.455626 | 7_3:-42486061 | None:intergenic |
| GATGGTTTACTCCAACAAAT+GGG | 0.455733 | 7_3:-42486710 | None:intergenic |
| GAATATGACATTTGGTGAAA+AGG | 0.456326 | 7_3:+42486434 | Msa1104770:CDS |
| CATGGCCAATCTGTGTTGTT+GGG | 0.456597 | 7_3:+42486732 | Msa1104770:CDS |
| GGCTATGAGAATATGACATT+TGG | 0.466582 | 7_3:+42486426 | Msa1104770:CDS |
| ACTCCAACAAATGGGGCAAA+AGG | 0.479062 | 7_3:-42486702 | None:intergenic |
| TTTGGGTAGATGCGAGATGT+AGG | 0.485083 | 7_3:+42486610 | Msa1104770:CDS |
| AGGATACTAAGTCCTTTACT+TGG | 0.489445 | 7_3:+42486775 | Msa1104770:CDS |
| TGGATCAAAGTATGTGAGTA+AGG | 0.495275 | 7_3:+42486146 | Msa1104770:CDS |
| AAGAGTTATGCCCAATCTAT+GGG | 0.502102 | 7_3:+42486051 | Msa1104770:CDS |
| CTCGTCATCGATGGTGTTTG+TGG | 0.503130 | 7_3:+42486904 | Msa1104770:CDS |
| ACAACACAGATTGGCCATGA+TGG | 0.504337 | 7_3:-42486728 | None:intergenic |
| TTGGGTAGATGCGAGATGTA+GGG | 0.507893 | 7_3:+42486611 | Msa1104770:CDS |
| TTTCATGGATCTGTCTTGAT+CGG | 0.508760 | 7_3:-42486853 | None:intergenic |
| AGGAGACTACGACTTGGGGC+TGG | 0.514634 | 7_3:+42486483 | Msa1104770:CDS |
| ATTTGTATCTTCTGATGAAG+AGG | 0.520293 | 7_3:+42485909 | Msa1104770:CDS |
| TGGATCCTCGTTTGAAAAGG+AGG | 0.528466 | 7_3:+42486334 | Msa1104770:CDS |
| TCAATGGTTGTTGAAGCAAA+TGG | 0.534602 | 7_3:+42486405 | Msa1104770:CDS |
| CACAGCCCAACAACACAGAT+TGG | 0.536074 | 7_3:-42486737 | None:intergenic |
| TCCCAAAAGCTCGTCATCGA+TGG | 0.545629 | 7_3:+42486895 | Msa1104770:CDS |
| GGGCTGTGCTTTATTGTCGA+AGG | 0.551617 | 7_3:+42486752 | Msa1104770:CDS |
| TTTGTTGGAGTAAACCATCA+TGG | 0.557125 | 7_3:+42486714 | Msa1104770:CDS |
| TAAAATAGCGTGCTTTGTCA+GGG | 0.562727 | 7_3:-42486296 | None:intergenic |
| TTAGAACTCAATGATCAAGC+TGG | 0.567016 | 7_3:+42486357 | Msa1104770:CDS |
| ACATGGTTAGAGTGCATGCA+TGG | 0.583025 | 7_3:+42486807 | Msa1104770:CDS |
| TTACTTGGTTATTCCAAACA+TGG | 0.586529 | 7_3:+42486790 | Msa1104770:CDS |
| CTGTGCTTTATTGTCGAAGG+AGG | 0.593919 | 7_3:+42486755 | Msa1104770:CDS |
| ATTCAATCTAGCCTTGCACT+GGG | 0.599186 | 7_3:-42486205 | None:intergenic |
| TGTTTGGAATAACCAAGTAA+AGG | 0.602120 | 7_3:-42486787 | None:intergenic |
| GATGAAGAGGAAATCAGAGA+GGG | 0.625109 | 7_3:+42485922 | Msa1104770:CDS |
| ACTTGGGGCTGGAGATGTTG+AGG | 0.626121 | 7_3:+42486494 | Msa1104770:CDS |
| TTAAATATAGTTCCAACCTG+AGG | 0.629130 | 7_3:-42486000 | None:intergenic |
| AGTGAGGAGACTACGACTTG+GGG | 0.641932 | 7_3:+42486479 | Msa1104770:CDS |
| AAAGTGAGGAGACTACGACT+TGG | 0.649574 | 7_3:+42486477 | Msa1104770:CDS |
| GAAACTATATAGATAAAGTG+AGG | 0.649765 | 7_3:+42486463 | Msa1104770:CDS |
| ATGGTTTACTCCAACAAATG+GGG | 0.652441 | 7_3:-42486709 | None:intergenic |
| TTTACTCTAGCATGTAGTCG+TGG | 0.653028 | 7_3:+42486126 | Msa1104770:CDS |
| TGATGAAGAGGAAATCAGAG+AGG | 0.679814 | 7_3:+42485921 | Msa1104770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGATTTATCATATAA+TGG | - | chr7_3:42485750-42485769 | None:intergenic | 10.0% |
| !!! | AAAATTGATTTATCATATAA+TGG | - | chr7_3:42485750-42485769 | None:intergenic | 10.0% |
| !!! | TTTTTAATTTATAGCATTAG+TGG | + | chr7_3:42485879-42485898 | Msa1104770:intron | 15.0% |
| !!! | TTTTTAATTTATAGCATTAG+TGG | + | chr7_3:42485879-42485898 | Msa1104770:intron | 15.0% |
| !! | TAAGTTAACTACCTTAAATT+GGG | + | chr7_3:42485691-42485710 | Msa1104770:intron | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | + | chr7_3:42485779-42485798 | Msa1104770:intron | 20.0% |
| !! | TAAGCATTAAATACAAAACT+AGG | - | chr7_3:42485810-42485829 | None:intergenic | 20.0% |
| !! | TAAGTTAACTACCTTAAATT+GGG | + | chr7_3:42485691-42485710 | Msa1104770:intron | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | + | chr7_3:42485779-42485798 | Msa1104770:intron | 20.0% |
| !! | TAAGCATTAAATACAAAACT+AGG | - | chr7_3:42485810-42485829 | None:intergenic | 20.0% |
| !! | TTTAAGGTAGTTAACTTACT+TGG | - | chr7_3:42485689-42485708 | None:intergenic | 25.0% |
| ! | GTAAGTTAACTACCTTAAAT+TGG | + | chr7_3:42485690-42485709 | Msa1104770:intron | 25.0% |
| ! | ATACTCAAAAAGTTCATCTT+TGG | - | chr7_3:42486028-42486047 | None:intergenic | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | + | chr7_3:42486093-42486112 | Msa1104770:CDS | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | + | chr7_3:42486094-42486113 | Msa1104770:CDS | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | + | chr7_3:42486225-42486244 | Msa1104770:CDS | 25.0% |
| !!! | TTTTAGAAGTAGCAAGTTTT+TGG | + | chr7_3:42486314-42486333 | Msa1104770:CDS | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | + | chr7_3:42486463-42486482 | Msa1104770:CDS | 25.0% |
| ! | TTTGTGGCATATAATGAAAA+AGG | + | chr7_3:42486920-42486939 | Msa1104770:CDS | 25.0% |
| !! | TTTAAGGTAGTTAACTTACT+TGG | - | chr7_3:42485689-42485708 | None:intergenic | 25.0% |
| ! | GTAAGTTAACTACCTTAAAT+TGG | + | chr7_3:42485690-42485709 | Msa1104770:intron | 25.0% |
| ! | ATACTCAAAAAGTTCATCTT+TGG | - | chr7_3:42486028-42486047 | None:intergenic | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | + | chr7_3:42486093-42486112 | Msa1104770:CDS | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | + | chr7_3:42486094-42486113 | Msa1104770:CDS | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | + | chr7_3:42486225-42486244 | Msa1104770:CDS | 25.0% |
| !!! | TTTTAGAAGTAGCAAGTTTT+TGG | + | chr7_3:42486314-42486333 | Msa1104770:CDS | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | + | chr7_3:42486463-42486482 | Msa1104770:CDS | 25.0% |
| ! | TTTGTGGCATATAATGAAAA+AGG | + | chr7_3:42486920-42486939 | Msa1104770:CDS | 25.0% |
| ATTTGTATCTTCTGATGAAG+AGG | + | chr7_3:42485909-42485928 | Msa1104770:CDS | 30.0% | |
| TTAAATATAGTTCCAACCTG+AGG | - | chr7_3:42486003-42486022 | None:intergenic | 30.0% | |
| ! | GGGTTTTTGTTAAAGGATTT+GGG | - | chr7_3:42486188-42486207 | None:intergenic | 30.0% |
| ! | TGGGTTTTTGTTAAAGGATT+TGG | - | chr7_3:42486189-42486208 | None:intergenic | 30.0% |
| ! | AAGCAGAAATTTTCGATCAA+TGG | + | chr7_3:42486389-42486408 | Msa1104770:CDS | 30.0% |
| ! | GAATATGACATTTGGTGAAA+AGG | + | chr7_3:42486434-42486453 | Msa1104770:CDS | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | + | chr7_3:42486593-42486612 | Msa1104770:CDS | 30.0% |
| ! | TGTTTGGAATAACCAAGTAA+AGG | - | chr7_3:42486790-42486809 | None:intergenic | 30.0% |
| TTACTTGGTTATTCCAAACA+TGG | + | chr7_3:42486790-42486809 | Msa1104770:CDS | 30.0% | |
| ATCCATGAAAAATGCAATTG+CGG | + | chr7_3:42486866-42486885 | Msa1104770:CDS | 30.0% | |
| ATTACACATAGACTCGTAAT+TGG | - | chr7_3:42486970-42486989 | None:intergenic | 30.0% | |
| ATTTGTATCTTCTGATGAAG+AGG | + | chr7_3:42485909-42485928 | Msa1104770:CDS | 30.0% | |
| TTAAATATAGTTCCAACCTG+AGG | - | chr7_3:42486003-42486022 | None:intergenic | 30.0% | |
| ! | GGGTTTTTGTTAAAGGATTT+GGG | - | chr7_3:42486188-42486207 | None:intergenic | 30.0% |
| ! | TGGGTTTTTGTTAAAGGATT+TGG | - | chr7_3:42486189-42486208 | None:intergenic | 30.0% |
| ! | AAGCAGAAATTTTCGATCAA+TGG | + | chr7_3:42486389-42486408 | Msa1104770:CDS | 30.0% |
| ! | GAATATGACATTTGGTGAAA+AGG | + | chr7_3:42486434-42486453 | Msa1104770:CDS | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | + | chr7_3:42486593-42486612 | Msa1104770:CDS | 30.0% |
| ! | TGTTTGGAATAACCAAGTAA+AGG | - | chr7_3:42486790-42486809 | None:intergenic | 30.0% |
| TTACTTGGTTATTCCAAACA+TGG | + | chr7_3:42486790-42486809 | Msa1104770:CDS | 30.0% | |
| ATCCATGAAAAATGCAATTG+CGG | + | chr7_3:42486866-42486885 | Msa1104770:CDS | 30.0% | |
| ATTACACATAGACTCGTAAT+TGG | - | chr7_3:42486970-42486989 | None:intergenic | 30.0% | |
| ATGGGTGATTACCCAATTTA+AGG | - | chr7_3:42485705-42485724 | None:intergenic | 35.0% | |
| !! | GTAGTTTGATCAGTTGATGA+GGG | - | chr7_3:42485728-42485747 | None:intergenic | 35.0% |
| TCATGAAGATGAAAAACCTC+AGG | + | chr7_3:42485984-42486003 | Msa1104770:CDS | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | + | chr7_3:42486051-42486070 | Msa1104770:CDS | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | - | chr7_3:42486064-42486083 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | - | chr7_3:42486065-42486084 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | + | chr7_3:42486146-42486165 | Msa1104770:CDS | 35.0% | |
| ! | TTGCACTGGGTTTTTGTTAA+AGG | - | chr7_3:42486195-42486214 | None:intergenic | 35.0% |
| TTTAACAAAAACCCAGTGCA+AGG | + | chr7_3:42486194-42486213 | Msa1104770:CDS | 35.0% | |
| TAAAATAGCGTGCTTTGTCA+GGG | - | chr7_3:42486299-42486318 | None:intergenic | 35.0% | |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | + | chr7_3:42486331-42486350 | Msa1104770:CDS | 35.0% |
| TTAGAACTCAATGATCAAGC+TGG | + | chr7_3:42486357-42486376 | Msa1104770:CDS | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | + | chr7_3:42486405-42486424 | Msa1104770:CDS | 35.0% | |
| GGCTATGAGAATATGACATT+TGG | + | chr7_3:42486426-42486445 | Msa1104770:CDS | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | + | chr7_3:42486592-42486611 | Msa1104770:CDS | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | + | chr7_3:42486630-42486649 | Msa1104770:CDS | 35.0% |
| ATGGTTTACTCCAACAAATG+GGG | - | chr7_3:42486712-42486731 | None:intergenic | 35.0% | |
| GATGGTTTACTCCAACAAAT+GGG | - | chr7_3:42486713-42486732 | None:intergenic | 35.0% | |
| TGATGGTTTACTCCAACAAA+TGG | - | chr7_3:42486714-42486733 | None:intergenic | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | + | chr7_3:42486714-42486733 | Msa1104770:CDS | 35.0% | |
| AGGATACTAAGTCCTTTACT+TGG | + | chr7_3:42486775-42486794 | Msa1104770:CDS | 35.0% | |
| TGATCGGTAATTATGGCATT+TGG | - | chr7_3:42486840-42486859 | None:intergenic | 35.0% | |
| TCTGTCTTGATCGGTAATTA+TGG | - | chr7_3:42486847-42486866 | None:intergenic | 35.0% | |
| TTTCATGGATCTGTCTTGAT+CGG | - | chr7_3:42486856-42486875 | None:intergenic | 35.0% | |
| !! | GAGTATCTACTTAGCTTTTC+TGG | - | chr7_3:42486948-42486967 | None:intergenic | 35.0% |
| ATGGGTGATTACCCAATTTA+AGG | - | chr7_3:42485705-42485724 | None:intergenic | 35.0% | |
| !! | GTAGTTTGATCAGTTGATGA+GGG | - | chr7_3:42485728-42485747 | None:intergenic | 35.0% |
| TCATGAAGATGAAAAACCTC+AGG | + | chr7_3:42485984-42486003 | Msa1104770:CDS | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | + | chr7_3:42486051-42486070 | Msa1104770:CDS | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | - | chr7_3:42486064-42486083 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | - | chr7_3:42486065-42486084 | None:intergenic | 35.0% | |
| TGGATCAAAGTATGTGAGTA+AGG | + | chr7_3:42486146-42486165 | Msa1104770:CDS | 35.0% | |
| ! | TTGCACTGGGTTTTTGTTAA+AGG | - | chr7_3:42486195-42486214 | None:intergenic | 35.0% |
| TTTAACAAAAACCCAGTGCA+AGG | + | chr7_3:42486194-42486213 | Msa1104770:CDS | 35.0% | |
| TAAAATAGCGTGCTTTGTCA+GGG | - | chr7_3:42486299-42486318 | None:intergenic | 35.0% | |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | + | chr7_3:42486331-42486350 | Msa1104770:CDS | 35.0% |
| TTAGAACTCAATGATCAAGC+TGG | + | chr7_3:42486357-42486376 | Msa1104770:CDS | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | + | chr7_3:42486405-42486424 | Msa1104770:CDS | 35.0% | |
| GGCTATGAGAATATGACATT+TGG | + | chr7_3:42486426-42486445 | Msa1104770:CDS | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | + | chr7_3:42486592-42486611 | Msa1104770:CDS | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | + | chr7_3:42486630-42486649 | Msa1104770:CDS | 35.0% |
| ATGGTTTACTCCAACAAATG+GGG | - | chr7_3:42486712-42486731 | None:intergenic | 35.0% | |
| GATGGTTTACTCCAACAAAT+GGG | - | chr7_3:42486713-42486732 | None:intergenic | 35.0% | |
| TGATGGTTTACTCCAACAAA+TGG | - | chr7_3:42486714-42486733 | None:intergenic | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | + | chr7_3:42486714-42486733 | Msa1104770:CDS | 35.0% | |
| AGGATACTAAGTCCTTTACT+TGG | + | chr7_3:42486775-42486794 | Msa1104770:CDS | 35.0% | |
| TGATCGGTAATTATGGCATT+TGG | - | chr7_3:42486840-42486859 | None:intergenic | 35.0% | |
| TCTGTCTTGATCGGTAATTA+TGG | - | chr7_3:42486847-42486866 | None:intergenic | 35.0% | |
| TTTCATGGATCTGTCTTGAT+CGG | - | chr7_3:42486856-42486875 | None:intergenic | 35.0% | |
| !! | GAGTATCTACTTAGCTTTTC+TGG | - | chr7_3:42486948-42486967 | None:intergenic | 35.0% |
| !! | TTGATCAGTTGATGAGGGAT+GGG | - | chr7_3:42485723-42485742 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | - | chr7_3:42485724-42485743 | None:intergenic | 40.0% |
| ! | GGTAGTTTGATCAGTTGATG+AGG | - | chr7_3:42485729-42485748 | None:intergenic | 40.0% |
| TGATGAAGAGGAAATCAGAG+AGG | + | chr7_3:42485921-42485940 | Msa1104770:CDS | 40.0% | |
| GATGAAGAGGAAATCAGAGA+GGG | + | chr7_3:42485922-42485941 | Msa1104770:CDS | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | + | chr7_3:42485988-42486007 | Msa1104770:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | + | chr7_3:42486050-42486069 | Msa1104770:CDS | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | + | chr7_3:42486057-42486076 | Msa1104770:CDS | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | + | chr7_3:42486126-42486145 | Msa1104770:CDS | 40.0% | |
| !! | ATTCAATCTAGCCTTGCACT+GGG | - | chr7_3:42486208-42486227 | None:intergenic | 40.0% |
| CTAAAATAGCGTGCTTTGTC+AGG | - | chr7_3:42486300-42486319 | None:intergenic | 40.0% | |
| ! | TCTAACCTCCTTTTCAAACG+AGG | - | chr7_3:42486342-42486361 | None:intergenic | 40.0% |
| ! | AGCCGCAATTGCATTTTTCA+TGG | - | chr7_3:42486871-42486890 | None:intergenic | 40.0% |
| !! | TTGATCAGTTGATGAGGGAT+GGG | - | chr7_3:42485723-42485742 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | - | chr7_3:42485724-42485743 | None:intergenic | 40.0% |
| ! | GGTAGTTTGATCAGTTGATG+AGG | - | chr7_3:42485729-42485748 | None:intergenic | 40.0% |
| TGATGAAGAGGAAATCAGAG+AGG | + | chr7_3:42485921-42485940 | Msa1104770:CDS | 40.0% | |
| GATGAAGAGGAAATCAGAGA+GGG | + | chr7_3:42485922-42485941 | Msa1104770:CDS | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | + | chr7_3:42485988-42486007 | Msa1104770:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | + | chr7_3:42486050-42486069 | Msa1104770:CDS | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | + | chr7_3:42486057-42486076 | Msa1104770:CDS | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | + | chr7_3:42486126-42486145 | Msa1104770:CDS | 40.0% | |
| !! | ATTCAATCTAGCCTTGCACT+GGG | - | chr7_3:42486208-42486227 | None:intergenic | 40.0% |
| CTAAAATAGCGTGCTTTGTC+AGG | - | chr7_3:42486300-42486319 | None:intergenic | 40.0% | |
| ! | TCTAACCTCCTTTTCAAACG+AGG | - | chr7_3:42486342-42486361 | None:intergenic | 40.0% |
| ! | AGCCGCAATTGCATTTTTCA+TGG | - | chr7_3:42486871-42486890 | None:intergenic | 40.0% |
| !! | CATTCAATCTAGCCTTGCAC+TGG | - | chr7_3:42486209-42486228 | None:intergenic | 45.0% |
| TGGATCCTCGTTTGAAAAGG+AGG | + | chr7_3:42486334-42486353 | Msa1104770:CDS | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | + | chr7_3:42486477-42486496 | Msa1104770:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | + | chr7_3:42486478-42486497 | Msa1104770:CDS | 45.0% | |
| TTTGGGTAGATGCGAGATGT+AGG | + | chr7_3:42486610-42486629 | Msa1104770:CDS | 45.0% | |
| TTGGGTAGATGCGAGATGTA+GGG | + | chr7_3:42486611-42486630 | Msa1104770:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | + | chr7_3:42486699-42486718 | Msa1104770:CDS | 45.0% |
| ACTCCAACAAATGGGGCAAA+AGG | - | chr7_3:42486705-42486724 | None:intergenic | 45.0% | |
| ! | ACAACACAGATTGGCCATGA+TGG | - | chr7_3:42486731-42486750 | None:intergenic | 45.0% |
| TCATGGCCAATCTGTGTTGT+TGG | + | chr7_3:42486731-42486750 | Msa1104770:CDS | 45.0% | |
| ! | CATGGCCAATCTGTGTTGTT+GGG | + | chr7_3:42486732-42486751 | Msa1104770:CDS | 45.0% |
| ! | CTGTGCTTTATTGTCGAAGG+AGG | + | chr7_3:42486755-42486774 | Msa1104770:CDS | 45.0% |
| GCATGCACTCTAACCATGTT+TGG | - | chr7_3:42486806-42486825 | None:intergenic | 45.0% | |
| ACATGGTTAGAGTGCATGCA+TGG | + | chr7_3:42486807-42486826 | Msa1104770:CDS | 45.0% | |
| ! | ACCATCGATGACGAGCTTTT+GGG | - | chr7_3:42486899-42486918 | None:intergenic | 45.0% |
| !! | CATTCAATCTAGCCTTGCAC+TGG | - | chr7_3:42486209-42486228 | None:intergenic | 45.0% |
| TGGATCCTCGTTTGAAAAGG+AGG | + | chr7_3:42486334-42486353 | Msa1104770:CDS | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | + | chr7_3:42486477-42486496 | Msa1104770:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | + | chr7_3:42486478-42486497 | Msa1104770:CDS | 45.0% | |
| TTTGGGTAGATGCGAGATGT+AGG | + | chr7_3:42486610-42486629 | Msa1104770:CDS | 45.0% | |
| TTGGGTAGATGCGAGATGTA+GGG | + | chr7_3:42486611-42486630 | Msa1104770:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | + | chr7_3:42486699-42486718 | Msa1104770:CDS | 45.0% |
| ACTCCAACAAATGGGGCAAA+AGG | - | chr7_3:42486705-42486724 | None:intergenic | 45.0% | |
| ! | ACAACACAGATTGGCCATGA+TGG | - | chr7_3:42486731-42486750 | None:intergenic | 45.0% |
| TCATGGCCAATCTGTGTTGT+TGG | + | chr7_3:42486731-42486750 | Msa1104770:CDS | 45.0% | |
| ! | CATGGCCAATCTGTGTTGTT+GGG | + | chr7_3:42486732-42486751 | Msa1104770:CDS | 45.0% |
| ! | CTGTGCTTTATTGTCGAAGG+AGG | + | chr7_3:42486755-42486774 | Msa1104770:CDS | 45.0% |
| GCATGCACTCTAACCATGTT+TGG | - | chr7_3:42486806-42486825 | None:intergenic | 45.0% | |
| ACATGGTTAGAGTGCATGCA+TGG | + | chr7_3:42486807-42486826 | Msa1104770:CDS | 45.0% | |
| ! | ACCATCGATGACGAGCTTTT+GGG | - | chr7_3:42486899-42486918 | None:intergenic | 45.0% |
| AGTGAGGAGACTACGACTTG+GGG | + | chr7_3:42486479-42486498 | Msa1104770:CDS | 50.0% | |
| CACAGCCCAACAACACAGAT+TGG | - | chr7_3:42486740-42486759 | None:intergenic | 50.0% | |
| ! | GGGCTGTGCTTTATTGTCGA+AGG | + | chr7_3:42486752-42486771 | Msa1104770:CDS | 50.0% |
| TCCCAAAAGCTCGTCATCGA+TGG | + | chr7_3:42486895-42486914 | Msa1104770:CDS | 50.0% | |
| ! | CACCATCGATGACGAGCTTT+TGG | - | chr7_3:42486900-42486919 | None:intergenic | 50.0% |
| CTCGTCATCGATGGTGTTTG+TGG | + | chr7_3:42486904-42486923 | Msa1104770:CDS | 50.0% | |
| AGTGAGGAGACTACGACTTG+GGG | + | chr7_3:42486479-42486498 | Msa1104770:CDS | 50.0% | |
| CACAGCCCAACAACACAGAT+TGG | - | chr7_3:42486740-42486759 | None:intergenic | 50.0% | |
| ! | GGGCTGTGCTTTATTGTCGA+AGG | + | chr7_3:42486752-42486771 | Msa1104770:CDS | 50.0% |
| TCCCAAAAGCTCGTCATCGA+TGG | + | chr7_3:42486895-42486914 | Msa1104770:CDS | 50.0% | |
| ! | CACCATCGATGACGAGCTTT+TGG | - | chr7_3:42486900-42486919 | None:intergenic | 50.0% |
| CTCGTCATCGATGGTGTTTG+TGG | + | chr7_3:42486904-42486923 | Msa1104770:CDS | 50.0% | |
| ACTTGGGGCTGGAGATGTTG+AGG | + | chr7_3:42486494-42486513 | Msa1104770:CDS | 55.0% | |
| ACTTGGGGCTGGAGATGTTG+AGG | + | chr7_3:42486494-42486513 | Msa1104770:CDS | 55.0% | |
| ! | AGGAGACTACGACTTGGGGC+TGG | + | chr7_3:42486483-42486502 | Msa1104770:CDS | 60.0% |
| ! | AGGAGACTACGACTTGGGGC+TGG | + | chr7_3:42486483-42486502 | Msa1104770:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 42485668 | 42487001 | 42485668 | ID=Msa1104770;Name=Msa1104770 |
| chr7_3 | mRNA | 42485668 | 42487001 | 42485668 | ID=Msa1104770-mRNA-1;Parent=Msa1104770;Name=Msa1104770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|376 |
| chr7_3 | exon | 42485668 | 42485689 | 42485668 | ID=Msa1104770-mRNA-1:exon:8609;Parent=Msa1104770-mRNA-1 |
| chr7_3 | exon | 42485893 | 42487001 | 42485893 | ID=Msa1104770-mRNA-1:exon:8610;Parent=Msa1104770-mRNA-1 |
| chr7_3 | CDS | 42485668 | 42485689 | 42485668 | ID=Msa1104770-mRNA-1:cds;Parent=Msa1104770-mRNA-1 |
| chr7_3 | CDS | 42485893 | 42487001 | 42485893 | ID=Msa1104770-mRNA-1:cds;Parent=Msa1104770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
