AlfalfaGEDB | Msa1105230

M. sativa cultivar zhongmu-4 / Msa1105230

KEGG: -
GO: GO:0005575 GO:0016020
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105230	XP_003622938.3	94.584	794	42	1	1	794	71	863	0.0	1555

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105230	sp\|P17801\|KPRO_MAIZE	39.926	814	434	20	14	787	14	812	0.0	566

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105230	G7L1A0	94.584	794	42	1	1	794	1	793	0.0	1554

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1105230	MtrunA17_Chr7g0237341	94.584	794	42	1	1	794	1	793	1554
Msa1105230	MtrunA17_Chr7g0237331	82.767	795	135	2	1	794	1	794	1339
Msa1105230	MtrunA17_Chr7g0237351	67.043	798	251	9	6	793	1	796	1062
Msa1105230	MtrunA17_Chr4g0053161	67.839	796	245	10	1	788	18	810	1043
Msa1105230	MtrunA17_Chr7g0237391	66.881	779	242	8	20	788	18	790	999
Msa1105230	MtrunA17_Chr7g0234561	68.759	701	210	7	94	788	34	731	979
Msa1105230	MtrunA17_Chr3g0106201	59.212	787	301	10	12	787	10	787	893
Msa1105230	MtrunA17_Chr3g0106211	56.767	798	317	11	8	787	11	798	875
Msa1105230	MtrunA17_Chr3g0106131	56.149	805	328	9	4	793	1	795	875
Msa1105230	MtrunA17_Chr3g0106121	56.506	807	326	10	4	793	1	799	874

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1105230	AT2G19130.1	31.365	813	474	24	11	788	4	767	6.04e-111	357
Msa1105230	AT5G24080.2	32.931	829	453	29	18	788	19	802	4.08e-106	346
Msa1105230	AT1G34300.1	30.730	794	461	28	25	788	23	757	1.94e-93	311
Msa1105230	AT4G00340.1	30.829	772	465	25	43	788	32	760	6.84e-93	309
Msa1105230	AT5G24080.3	33.007	715	382	25	131	788	1	675	3.59e-92	305
Msa1105230	AT5G24080.1	33.007	715	382	25	131	788	1	675	3.59e-92	305
Msa1105230	AT4G00340.2	29.948	768	456	23	43	788	32	739	3.28e-90	301
Msa1105230	AT5G35370.1	30.247	810	445	31	44	788	50	804	5.62e-89	300
Msa1105230	AT4G32300.1	29.434	778	452	26	46	788	50	765	1.47e-80	276
Msa1105230	AT4G21390.1	28.313	830	499	29	13	788	13	800	6.33e-75	261

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Find 160 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTGGAAGCTAATTT+CGG	0.364151	7_3:-43558015	Msa1105230:CDS
AAACACAATTGCGAAATGGA+AGG	0.613290	7_3:-43557452	Msa1105230:CDS
AAACTTTACAATGCTCAACA+AGG	0.651088	7_3:-43557021	Msa1105230:CDS
AAAGAGGCAGTAACATTTCT+TGG	0.283323	7_3:-43556444	Msa1105230:CDS
AAAGGATTTCAGTACGGTTT+TGG	0.266439	7_3:-43557507	Msa1105230:CDS
AAAGGGTTCAGTCAAGAGAT+TGG	0.483002	7_3:-43557108	Msa1105230:CDS
AAAGGGTTCCTCCCTCTCAG+TGG	0.652420	7_3:-43558555	Msa1105230:CDS
AAATTGTGATAAAAGTAAAA+TGG	0.368204	7_3:-43556389	Msa1105230:CDS
AACAACACCATTATTTGGAT+GGG	0.478668	7_3:-43558413	Msa1105230:CDS
AACCATAAGACCAATCGCTA+TGG	0.597360	7_3:+43557679	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACACTCTTTATTCTAGTAT+TGG	-	chr7_3:43556305-43556324	Msa1105230:CDS	30.0%
TTCTTCTTCATCATTGAGAA+AGG	-	chr7_3:43556353-43556372	Msa1105230:CDS	30.0%
TCTTCTTCATCATTGAGAAA+GGG	-	chr7_3:43556354-43556373	Msa1105230:CDS	30.0%
ACTTCAACAACACCATTATT+TGG	-	chr7_3:43556508-43556527	Msa1105230:CDS	30.0%
AACAACACCATTATTTGGAT+GGG	-	chr7_3:43556513-43556532	Msa1105230:CDS	30.0%
AGTGTTTAAAAGGGTAAGTT+TGG	+	chr7_3:43556571-43556590	None:intergenic	30.0%
CAATAAGAGCTAGAAATATC+AGG	+	chr7_3:43556888-43556907	None:intergenic	30.0%
AAAACCTTGGAAGCTAATTT+CGG	-	chr7_3:43556911-43556930	Msa1105230:CDS	30.0%
TGGATTCTGATGGTAATTTA+AGG	-	chr7_3:43557063-43557082	Msa1105230:CDS	30.0%
GGATTCTGATGGTAATTTAA+GGG	-	chr7_3:43557064-43557083	Msa1105230:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	43556282	43558666	43556282	ID=Msa1105230;Name=Msa1105230
chr7_3	mRNA	43556282	43558666	43556282	ID=Msa1105230-mRNA-1;Parent=Msa1105230;Name=Msa1105230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|794
chr7_3	exon	43556282	43558666	43556282	ID=Msa1105230-mRNA-1:exon:8949;Parent=Msa1105230-mRNA-1
chr7_3	CDS	43556282	43558666	43556282	ID=Msa1105230-mRNA-1:cds;Parent=Msa1105230-mRNA-1

Gene Sequence

>Msa1105230

ATGAATAATATGGGTTTGTCATTCACACTCTTTATTCTAGTATTGGCCTTTTTATTTCAATGTTCATCTTCTTCTTCTTCATCATTGAGAAAGGGTTCCTCCCTCTCAGTGGAAAATCCAGAAGACAACATCATCTCACAAAATGGCATGTTCTCTGCTGGCTTCACTGCTATTGGTGACAATGCATATTCCTTTGCCATATGGTTCACAGAACCAAATTCCCTCAACTTCAACAACACCATTATTTGGATGGGAAATCGCGACCAACTCGTGAATGGAAAACGATCCAAACTTACCCTTTTAAACACTGGAAATATTGTATTGTTTGATGTTTCTTTAAACAATGTTTGGTCTTCAAACACTGCATCATTGAAACCATTAGAGTTGCATCTCAAAAATGATGGAAATCTTGTGTTGCGTGAGCTTCAAGGAATCACAATTTTGTGGCAAAGTTTTGACTCTCCAACAGATACTCTCCTTCCAGGTCAACCTCTTACAAGATATACAAAGCTTGTAGCTTCAAGAAGTGAGAGCAATCATTCTACTGGCTTCTACAAGTTCTACTTTGATGATGCAAATGTTCTTGGTCTTCATTATGATGGCCCTGATATTTCTAGCTCTTATTGGCCAAAACCTTGGAAGCTAATTTCGGAAATTGGTAGGGCTAATTTCAATGGTAGCAGAATTGCATTGTTGGACTCTTTTGGTAGTTTCCTTTCATCAGATAATTTGACTTTTATAACTTCTGATTATGGAACAGTTCTACAAAGAAGAATGAAAATGGATTCTGATGGTAATTTAAGGGTGTATAGTAGAATTAATGTGTCACAAAATTGGTATGTTTCATGGCAAGCCATTTATGGTGCTTGCATAGCTCATGGGATTTGCGGTGATAATAGCACATGTAGTTATAATCCTAAGCATGGAAGAAAATGTTCTTGTATTCCGGGATATAAAGTGAAGAACCATAGCGATTGGTCTTATGGTTGCGAGCCTATGTTTGATTTTACTTGCAATAGAAGTGAGTCTACCTTTTTTGAGATGGTAAATGTTGAGTTTTATGGCTATGACATTCATTATGTTCCTATGAGTAACTATAGTTCTTGTGAGAAATTGTGCTTAGAAGATTGTAATTGTAAAGGATTTCAGTACGGTTTTGGGGTAGTAAAAGGCTTTTATAAGTGTTATACAAAAACACAATTGCGAAATGGAAGGCATTCACCATTCTTTGTAGGAACAACCTACTTGAGATTGCCTAAAGGTAATAACTTCTCTAAAGAAGAATCTTCCACTCCAAGTGATCATGTTTGTCTTGTGAAACTTCAAAGAGATTTTGTTAGACCAAGTGAGAACCATTATGTGAATTTTTTTCTATGGTTTGCCGCTGCGATCGGAGCTTTTGAAGCGGTCTGCATTTTCATCGTTTGGTGTTCCTTATTCAGGAACCGAAAGACAAATGCAGACCAACACGGATACCACCAGCTCGCAGCAATAGGGTTTAGAAAATTTAGTTACTTAGAGTTAAAGAAAGCAACGAAAGGGTTCAGTCAAGAGATTGGAAGAGGTGGAGGAGGTATCGTGTACAAAGGACTATTATCTGATCAAAGACATGCTGCAATAAAAAAACTTTACAATGCTCAACAAGGAAAAGGTGAATTTCTAGCTGAAGTAGGAATAATTGGAAGGCTTAATCACATGAATTTGATTGAAATGTGGGGATATTGTGCCGAGGGAAAATATAGACTATTGGTTTATGAGTACATGGAAAATGGCTCTTTAGCCGAAAACTTGTCAGCTAATAAACTTGATTGGAGTAAAAGGTACAAAATTGCTTTATCGATAGCAAGAGTTTTAGCATATCTACATGAAGAATGTTTGGAGTGGATTTTACATTGTGATATAAAACCACAAAATATACTTCTTGATTCTAACTTCCAGCCCAAGTTAGCTGATTTTGGATTGTCTAAGCTGCAAAACAGGAACAACCTTAATAATTCATGCATCTCAATGATTAGAGGAACAAGAGGGTATATGGCCCCTGAATGGATTTTCAATTTGCCAATAACATCTAAGGTGGATGTTTATAGTTATGGAATAGTTGTGTTGGAAATGATAACAGGAAAAAGTCCAACTACAAGTTTCAAAATTGTAAATGGAGAAGAGGAAAGTGATGGGAGGTTGGTTACATGGGTGAGAGAAAAAAGAGGCAGTAACATTTCTTGGTTGGAGGAAATTGTTGACCCTCAAATTGGATTAAATTGTGATAAAAGTAAAATGGAGATTTTGGCTAAAGTTGCTTTGGATTGTGTTGTGGATGAAAGAGATTCAAGGCCTACCATGAGTAAAGTAGTTGAGATGCTTCAATACCATGGAAGTGATGTTTAG

Protein sequence

>Msa1105230

MNNMGLSFTLFILVLAFLFQCSSSSSSSLRKGSSLSVENPEDNIISQNGMFSAGFTAIGDNAYSFAIWFTEPNSLNFNNTIIWMGNRDQLVNGKRSKLTLLNTGNIVLFDVSLNNVWSSNTASLKPLELHLKNDGNLVLRELQGITILWQSFDSPTDTLLPGQPLTRYTKLVASRSESNHSTGFYKFYFDDANVLGLHYDGPDISSSYWPKPWKLISEIGRANFNGSRIALLDSFGSFLSSDNLTFITSDYGTVLQRRMKMDSDGNLRVYSRINVSQNWYVSWQAIYGACIAHGICGDNSTCSYNPKHGRKCSCIPGYKVKNHSDWSYGCEPMFDFTCNRSESTFFEMVNVEFYGYDIHYVPMSNYSSCEKLCLEDCNCKGFQYGFGVVKGFYKCYTKTQLRNGRHSPFFVGTTYLRLPKGNNFSKEESSTPSDHVCLVKLQRDFVRPSENHYVNFFLWFAAAIGAFEAVCIFIVWCSLFRNRKTNADQHGYHQLAAIGFRKFSYLELKKATKGFSQEIGRGGGGIVYKGLLSDQRHAAIKKLYNAQQGKGEFLAEVGIIGRLNHMNLIEMWGYCAEGKYRLLVYEYMENGSLAENLSANKLDWSKRYKIALSIARVLAYLHEECLEWILHCDIKPQNILLDSNFQPKLADFGLSKLQNRNNLNNSCISMIRGTRGYMAPEWIFNLPITSKVDVYSYGIVVLEMITGKSPTTSFKIVNGEEESDGRLVTWVREKRGSNISWLEEIVDPQIGLNCDKSKMEILAKVALDCVVDERDSRPTMSKVVEMLQYHGSDV*