AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1105740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105740 MtrunA17_Chr7g0237841 84.699 183 6 3 210 378 596 770 1.97e-96 303
Msa1105740 MtrunA17_Chr7g0237841 61.961 255 58 8 44 277 105 341 2.84e-83 269
Msa1105740 MtrunA17_Chr7g0237841 97.619 42 1 0 1 42 1 42 2.07e-19 90.1
Msa1105740 MtrunA17_Chr7g0251891 58.824 85 35 0 228 312 21 105 3.00e-30 115
Msa1105740 MtrunA17_Chr4g0047031 45.882 85 45 1 228 312 182 265 9.12e-19 86.7
Msa1105740 MtrunA17_Chr7g0244871 39.326 89 53 1 222 310 11 98 2.23e-17 77.0
Msa1105740 MtrunA17_Chr3g0107701 36.634 101 63 1 222 322 337 436 2.44e-16 80.9
Msa1105740 MtrunA17_Chr2g0281191 31.496 127 77 2 196 322 334 450 5.38e-16 79.7
Msa1105740 MtrunA17_Chr4g0012861 34.653 101 65 1 222 322 313 412 9.44e-16 79.0
Msa1105740 MtrunA17_Chr5g0432721 37.383 107 64 3 221 326 319 423 1.05e-15 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105740 AT3G24650.1 65.116 172 31 4 221 373 555 716 2.78e-63 215
Msa1105740 AT3G26790.1 61.957 92 35 0 228 319 96 187 1.62e-34 130
Msa1105740 AT1G28300.1 58.824 85 35 0 228 312 175 259 1.09e-29 117
Msa1105740 AT4G32010.2 33.613 119 77 2 205 322 262 379 1.62e-16 81.6
Msa1105740 AT2G30470.1 37.755 98 60 1 222 319 293 389 1.96e-16 81.6
Msa1105740 AT4G32010.1 36.634 101 63 1 222 322 284 383 2.28e-16 81.3
Msa1105740 AT4G21550.2 37.634 93 54 3 221 313 325 413 1.13e-13 72.8
Msa1105740 AT4G21550.3 37.634 93 54 3 221 313 325 413 1.46e-13 72.4
Msa1105740 AT4G21550.1 37.634 93 54 3 221 313 325 413 1.49e-13 72.8

Find 67 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCCTCTGCAGCTTCT+TGG 0.156164 7_3:-44598949 Msa1105740:intron
CCATCTCTTGCCTCCAATTC+TGG 0.191237 7_3:+44596585 None:intergenic
GAAATTTAGCAGAAGAAAAT+TGG 0.230877 7_3:-44599177 Msa1105740:CDS
GAAACAGAACAAGTTGGTTT+TGG 0.246821 7_3:-44599199 Msa1105740:CDS
TTCTTCCTCTGCAGCTTCTT+GGG 0.260263 7_3:-44598948 Msa1105740:intron
CATGGATGATGTTAACATTA+TGG 0.261818 7_3:-44598726 Msa1105740:CDS
CAAATGCGTTTGTTGTGTTT+TGG 0.298875 7_3:-44597738 Msa1105740:CDS
TCACAATGAAATCTCCTTCT+TGG 0.299532 7_3:+44596221 None:intergenic
TTTGTCATCAACTGCTTCTA+TGG 0.302150 7_3:-44598822 Msa1105740:CDS
ACATTGGAACTTCTCGAGTT+TGG 0.314913 7_3:-44596542 Msa1105740:CDS
GAGTTTGGAATATGCGTTAC+AGG 0.322554 7_3:-44596527 Msa1105740:intron
AGAAACACATTTGCCAGAAT+TGG 0.333835 7_3:-44596598 Msa1105740:CDS
GTTAACATTATGGATACTTT+TGG 0.334842 7_3:-44598716 Msa1105740:intron
CGATGATAGTGCATGATGAT+AGG 0.369266 7_3:-44598550 Msa1105740:CDS
GCAAAGTGATGTGGGAAGTC+TGG 0.373169 7_3:-44596738 Msa1105740:CDS
TCTAATAATGATGTTGTTGT+TGG 0.394879 7_3:-44598764 Msa1105740:CDS
TGAAGAGGAAAACCCTTTAG+TGG 0.408416 7_3:-44598636 Msa1105740:CDS
TATCGGGTGCACTTCGGCCC+TGG 0.412632 7_3:+44597218 None:intergenic
GATGTTGTTGTTGGTGGTGG+TGG 0.429366 7_3:-44598755 Msa1105740:CDS
CAAAGTGATGTGGGAAGTCT+GGG 0.435116 7_3:-44596737 Msa1105740:CDS
AATAATGATGTTGTTGTTGG+TGG 0.439367 7_3:-44598761 Msa1105740:CDS
TGACCATGATGATAATCTAA+TGG 0.440958 7_3:+44598857 None:intergenic
TGGTGGTGGTGGTGATTGCA+TGG 0.445577 7_3:-44598744 Msa1105740:CDS
AATGATGTTGTTGTTGGTGG+TGG 0.446582 7_3:-44598758 Msa1105740:CDS
CTTGTGTGAAATCCACTAAA+GGG 0.453109 7_3:+44598624 None:intergenic
GCAGTTGATGACAAAGTTGT+TGG 0.458355 7_3:+44598830 None:intergenic
TTAGATCTTGTTATGGAGTG+TGG 0.458680 7_3:-44599250 None:intergenic
TGTTGAGGAACAAGATTTGA+AGG 0.459544 7_3:-44597688 Msa1105740:intron
TTGCTGCATTATTCCCATGC+TGG 0.461065 7_3:+44595665 None:intergenic
CAACAACAGCAACAAGATCT+TGG 0.467069 7_3:-44598791 Msa1105740:CDS
GGAACTGCAGTGGATAATAA+TGG 0.468390 7_3:-44595634 Msa1105740:CDS
AACACATTTGCCAGAATTGG+AGG 0.485525 7_3:-44596595 Msa1105740:CDS
TCCTCGATATTCACTTGTTG+CGG 0.497932 7_3:+44598518 None:intergenic
TCCACAAACCTGTCTCCTAT+CGG 0.498147 7_3:+44597201 None:intergenic
CCACAAACCTGTCTCCTATC+GGG 0.499467 7_3:+44597202 None:intergenic
TCTTGTGTGAAATCCACTAA+AGG 0.501764 7_3:+44598623 None:intergenic
CCAGAATTGGAGGCAAGAGA+TGG 0.521085 7_3:-44596585 Msa1105740:CDS
TCGATTACAATGGAAGACAT+TGG 0.521875 7_3:-44596558 Msa1105740:CDS
TTTAGATCTGCATGCAAAGT+TGG 0.524550 7_3:-44599227 Msa1105740:CDS
CATCCATTAGATTATCATCA+TGG 0.529410 7_3:-44598860 Msa1105740:CDS
AATAATGCAGCAAATTCAGC+TGG 0.533401 7_3:-44595655 Msa1105740:CDS
GATGATAGTGCATGATGATA+GGG 0.534942 7_3:-44598549 Msa1105740:CDS
AAGTGCACCCGATAGGAGAC+AGG 0.539885 7_3:-44597209 Msa1105740:intron
GTGAATGAAACAGAACAAGT+TGG 0.541250 7_3:-44599205 Msa1105740:CDS
ATTGGCCAAACAACAAAAGC+AGG 0.559048 7_3:-44596376 Msa1105740:CDS
TTTGTGATACAGATGATAAG+AGG 0.559171 7_3:-44595754 Msa1105740:intron
CTATCATCATGCACTATCAT+CGG 0.562495 7_3:+44598551 None:intergenic
ACAGACACAGAATTCTCACC+AGG 0.564460 7_3:-44597236 Msa1105740:intron
AGATGGAATTTCGATTACAA+TGG 0.569089 7_3:-44596568 Msa1105740:CDS
GCAACAAGTTCAAGTTCAAG+AGG 0.571642 7_3:-44598600 Msa1105740:CDS
TCTTGAAACTGTTGTTGTTG+AGG 0.572652 7_3:-44597703 Msa1105740:CDS
AATACTACAAATGATCAAGA+TGG 0.586104 7_3:-44599148 Msa1105740:CDS
GTCTCCTATCGGGTGCACTT+CGG 0.589557 7_3:+44597212 None:intergenic
AAAGCTAATGGACTCCAAGA+AGG 0.591042 7_3:-44596235 Msa1105740:CDS
AGGGCCGAAGTGCACCCGAT+AGG 0.592099 7_3:-44597216 Msa1105740:CDS
CAACAAGTTCAAGTTCAAGA+GGG 0.595877 7_3:-44598599 Msa1105740:CDS
GATGTTGAAGTAGATCATCA+AGG 0.604610 7_3:-44598911 Msa1105740:CDS
GTTGATGACAAAGTTGTTGG+AGG 0.610564 7_3:+44598833 None:intergenic
GTTAAAGTGAGGCAGCAACA+AGG 0.639002 7_3:-44595730 Msa1105740:CDS
TGATAAGAGGAGTTAAAGTG+AGG 0.652929 7_3:-44595741 Msa1105740:CDS
AAATTCAGCTGGAACTGCAG+TGG 0.653260 7_3:-44595644 Msa1105740:CDS
ATGTATTTGCTAGAGAACAC+TGG 0.658087 7_3:-44596353 Msa1105740:intron
AACAAGTTCAAGTTCAAGAG+GGG 0.673097 7_3:-44598598 Msa1105740:CDS
ATATATTCTGATGTGAAGTG+TGG 0.700022 7_3:-44596199 Msa1105740:CDS
ACCGCAACAAGTGAATATCG+AGG 0.707077 7_3:-44598519 Msa1105740:CDS
AAAGTGATGTGGGAAGTCTG+GGG 0.734540 7_3:-44596736 Msa1105740:CDS
CAGACACAGAATTCTCACCA+GGG 0.761167 7_3:-44597235 Msa1105740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTATAAGTTTTAAATTA+TGG - chr7_3:44597778-44597797 Msa1105740:intron 10.0%
!!! TTTTTTTAACTTAATTTTCA+TGG - chr7_3:44598698-44598717 Msa1105740:intron 10.0%
!! NNNNNNNNNNATGGTGTAAA+TGG + chr7_3:44597462-44597481 None:intergenic 15.0%
!!! AGAAAATGAATAATTACTTT+TGG + chr7_3:44598143-44598162 None:intergenic 15.0%
!!! TGTATTCATTTTCATTTTAT+AGG - chr7_3:44598573-44598592 Msa1105740:CDS 15.0%
!! AAAAAAAACATTATAAGAGA+AGG + chr7_3:44598682-44598701 None:intergenic 15.0%
!! AGAATGTAAAATATGAAAAT+CGG + chr7_3:44598851-44598870 None:intergenic 15.0%
!! TATAAAGTTTGAGAATTAAT+TGG - chr7_3:44599053-44599072 Msa1105740:intron 15.0%
!! GACAATTATAATTGATTGAT+CGG + chr7_3:44597957-44597976 None:intergenic 20.0%
!!! TAACTTAATTTTCATGGATT+TGG - chr7_3:44598704-44598723 Msa1105740:intron 20.0%
!! GTTTAATATTGCAATTTAGA+CGG + chr7_3:44599003-44599022 None:intergenic 20.0%
! GAAATTTAGCAGAAGAAAAT+TGG - chr7_3:44595664-44595683 Msa1105740:CDS 25.0%
! AATACTACAAATGATCAAGA+TGG - chr7_3:44595693-44595712 Msa1105740:CDS 25.0%
! TCTAATAATGATGTTGTTGT+TGG - chr7_3:44596077-44596096 Msa1105740:intron 25.0%
!! GTTAACATTATGGATACTTT+TGG - chr7_3:44596125-44596144 Msa1105740:intron 25.0%
!!! TTCGATTTTTCAAAATGAAG+AGG - chr7_3:44596190-44596209 Msa1105740:CDS 25.0%
! AAACTACAATCAATCATTTG+TGG + chr7_3:44596845-44596864 None:intergenic 25.0%
! ACAAATGATTGATTGTAGTT+TGG - chr7_3:44596844-44596863 Msa1105740:intron 25.0%
! TACTAATGAATATCACATGT+TGG + chr7_3:44596911-44596930 None:intergenic 25.0%
! CATATTTATCCATTTGTATG+CGG - chr7_3:44597876-44597895 Msa1105740:intron 25.0%
! ATAATTGATTGATCGGATAA+TGG + chr7_3:44597950-44597969 None:intergenic 25.0%
! TGTTGATGTATTTGATTGAT+AGG - chr7_3:44598031-44598050 Msa1105740:intron 25.0%
! GTTGATGTATTTGATTGATA+GGG - chr7_3:44598032-44598051 Msa1105740:intron 25.0%
!!! TCTTTTCGATTATTTCTTCT+TGG - chr7_3:44598432-44598451 Msa1105740:intron 25.0%
! GAGTTATTCTTCTTATTCAT+TGG - chr7_3:44598512-44598531 Msa1105740:CDS 25.0%
! TCACAATTCAATTAGTTGAA+CGG + chr7_3:44598798-44598817 None:intergenic 25.0%
! AAAGTTTGAGAATTAATTGG+TGG - chr7_3:44599056-44599075 Msa1105740:intron 25.0%
! AAGTTTGAGAATTAATTGGT+GGG - chr7_3:44599057-44599076 Msa1105740:intron 25.0%
AGTAACATGCATCAAAAACA+TGG - chr7_3:44595957-44595976 Msa1105740:intron 30.0%
CATCCATTAGATTATCATCA+TGG - chr7_3:44595981-44596000 Msa1105740:intron 30.0%
TGACCATGATGATAATCTAA+TGG + chr7_3:44595987-44596006 None:intergenic 30.0%
! AATAATGATGTTGTTGTTGG+TGG - chr7_3:44596080-44596099 Msa1105740:intron 30.0%
CATGGATGATGTTAACATTA+TGG - chr7_3:44596115-44596134 Msa1105740:intron 30.0%
!! TATGGATACTTTTGGTTACA+TGG - chr7_3:44596133-44596152 Msa1105740:intron 30.0%
!! CATTTTGAAAAATCGAAGCA+GGG + chr7_3:44596187-44596206 None:intergenic 30.0%
!! TCATTTTGAAAAATCGAAGC+AGG + chr7_3:44596188-44596207 None:intergenic 30.0%
AACCTTGAATATTCTGATGA+TGG - chr7_3:44596623-44596642 Msa1105740:intron 30.0%
AACCATCATCAGAATATTCA+AGG + chr7_3:44596628-44596647 None:intergenic 30.0%
! AATTCTTATCAGTTGTTTCC+TGG + chr7_3:44596760-44596779 None:intergenic 30.0%
TTGGAATCAAATCATTCATG+GGG + chr7_3:44596892-44596911 None:intergenic 30.0%
GTTGGAATCAAATCATTCAT+GGG + chr7_3:44596893-44596912 None:intergenic 30.0%
TGTTGGAATCAAATCATTCA+TGG + chr7_3:44596894-44596913 None:intergenic 30.0%
GAAACAGAACCATTTGTATA+AGG - chr7_3:44596961-44596980 Msa1105740:intron 30.0%
AGGTATTATTGTGTTAGTGT+TGG - chr7_3:44597173-44597192 Msa1105740:intron 30.0%
CTAGTCATCTTCAAAACAAA+AGG + chr7_3:44597212-44597231 None:intergenic 30.0%
GTTGAAGCTTATTCTTGAAT+GGG + chr7_3:44597241-44597260 None:intergenic 30.0%
TGTTGAAGCTTATTCTTGAA+TGG + chr7_3:44597242-44597261 None:intergenic 30.0%
! TGAAATGAGTATGGTTTTCT+TGG + chr7_3:44597388-44597407 None:intergenic 30.0%
TGTAAGTGATGAAATGAGTA+TGG + chr7_3:44597397-44597416 None:intergenic 30.0%
AGTATTCAAGGAGATGAATT+AGG + chr7_3:44597432-44597451 None:intergenic 30.0%
TAATTGTGGCTGCAATATAA+TGG - chr7_3:44597811-44597830 Msa1105740:intron 30.0%
GATAAATATGACCACAATTG+TGG + chr7_3:44597866-44597885 None:intergenic 30.0%
ATGTATTTGATTGATAGGGT+TGG - chr7_3:44598036-44598055 Msa1105740:intron 30.0%
ATTGCAAAAACATCAGAAAG+AGG - chr7_3:44598219-44598238 Msa1105740:intron 30.0%
AGATGGAATTTCGATTACAA+TGG - chr7_3:44598273-44598292 Msa1105740:intron 30.0%
!! TCTTCTTATTCATTGGTCTT+TGG - chr7_3:44598519-44598538 Msa1105740:CDS 30.0%
ATATATTCTGATGTGAAGTG+TGG - chr7_3:44598642-44598661 Msa1105740:CDS 30.0%
!!! TGGTCTGGTTTTTAAAACTT+TGG + chr7_3:44598767-44598786 None:intergenic 30.0%
CACAATTCAATTAGTTGAAC+GGG + chr7_3:44598797-44598816 None:intergenic 30.0%
CTAATTGAATTGTGAATCCT+CGG - chr7_3:44598803-44598822 Msa1105740:CDS 30.0%
TAATTGAATTGTGAATCCTC+GGG - chr7_3:44598804-44598823 Msa1105740:CDS 30.0%
AATATTGCAATTTAGACGGT+TGG + chr7_3:44598999-44599018 None:intergenic 30.0%
TTTGTGATACAGATGATAAG+AGG - chr7_3:44599087-44599106 Msa1105740:intron 30.0%
TTTAGATCTGCATGCAAAGT+TGG - chr7_3:44595614-44595633 Msa1105740:CDS 35.0%
GTGAATGAAACAGAACAAGT+TGG - chr7_3:44595636-44595655 Msa1105740:CDS 35.0%
!!! GAAACAGAACAAGTTGGTTT+TGG - chr7_3:44595642-44595661 Msa1105740:CDS 35.0%
! GATCAAGATGGTGATCTTTT+AGG - chr7_3:44595705-44595724 Msa1105740:CDS 35.0%
ATGCATGGAAAATCAGGTAA+AGG + chr7_3:44595777-44595796 None:intergenic 35.0%
! GTACATGCAATGGTTTTCAA+TGG + chr7_3:44595831-44595850 None:intergenic 35.0%
TGTAGTTGAAGTACATGCAA+TGG + chr7_3:44595841-44595860 None:intergenic 35.0%
GATGTTGAAGTAGATCATCA+AGG - chr7_3:44595930-44595949 Msa1105740:intron 35.0%
TTTGTCATCAACTGCTTCTA+TGG - chr7_3:44596019-44596038 Msa1105740:intron 35.0%
AGCAGGGTCAAAAAATTCAT+TGG + chr7_3:44596171-44596190 None:intergenic 35.0%
CTTGTGTGAAATCCACTAAA+GGG + chr7_3:44596220-44596239 None:intergenic 35.0%
TCTTGTGTGAAATCCACTAA+AGG + chr7_3:44596221-44596240 None:intergenic 35.0%
! CAACAAGTTCAAGTTCAAGA+GGG - chr7_3:44596242-44596261 Msa1105740:CDS 35.0%
! AACAAGTTCAAGTTCAAGAG+GGG - chr7_3:44596243-44596262 Msa1105740:CDS 35.0%
CTATCATCATGCACTATCAT+CGG + chr7_3:44596293-44596312 None:intergenic 35.0%
! GATGATAGTGCATGATGATA+GGG - chr7_3:44596292-44596311 Msa1105740:intron 35.0%
CAAAAGAAGCTAGAAAGAAG+AGG + chr7_3:44596699-44596718 None:intergenic 35.0%
!! GGTATGAATTTTGGAGGTTA+TGG + chr7_3:44596793-44596812 None:intergenic 35.0%
! CAACCTCATGGTATGAATTT+TGG + chr7_3:44596802-44596821 None:intergenic 35.0%
TGATATTCATTAGTAGCAGC+AGG - chr7_3:44596916-44596935 Msa1105740:intron 35.0%
GTTGCTGATCCTTATACAAA+TGG + chr7_3:44596973-44596992 None:intergenic 35.0%
! CAATTTTCACAACCAATGGT+TGG + chr7_3:44597012-44597031 None:intergenic 35.0%
! ACAGCAATTTTCACAACCAA+TGG + chr7_3:44597016-44597035 None:intergenic 35.0%
ATTGGTTGTGAAAATTGCTG+TGG - chr7_3:44597015-44597034 Msa1105740:intron 35.0%
TTTGATCTAGCCATGATGTT+TGG - chr7_3:44597055-44597074 Msa1105740:intron 35.0%
!!! CAAATGCGTTTGTTGTGTTT+TGG - chr7_3:44597103-44597122 Msa1105740:intron 35.0%
! TCTTGAAACTGTTGTTGTTG+AGG - chr7_3:44597138-44597157 Msa1105740:intron 35.0%
TGTTGAGGAACAAGATTTGA+AGG - chr7_3:44597153-44597172 Msa1105740:intron 35.0%
!! AATGGAGAAGAGAGTATTCA+AGG + chr7_3:44597444-44597463 None:intergenic 35.0%
ATGGTCAACAACTGTAATTG+TGG - chr7_3:44597797-44597816 Msa1105740:intron 35.0%
ATGCGGATATCGTAGTATAA+TGG - chr7_3:44597893-44597912 Msa1105740:intron 35.0%
! GCTTCAAAACCTTTTGTAGA+AGG + chr7_3:44598085-44598104 None:intergenic 35.0%
!!! GTTTTGAAGCAAAGTGATGT+GGG - chr7_3:44598095-44598114 Msa1105740:intron 35.0%
AGAAACACATTTGCCAGAAT+TGG - chr7_3:44598243-44598262 Msa1105740:intron 35.0%
TCGATTACAATGGAAGACAT+TGG - chr7_3:44598283-44598302 Msa1105740:intron 35.0%
! TACAGGTGAGCAAATTTTCA+TGG - chr7_3:44598331-44598350 Msa1105740:intron 35.0%
!!! TACATCCTGCTTTTGTTGTT+TGG + chr7_3:44598473-44598492 None:intergenic 35.0%
! ATGTATTTGCTAGAGAACAC+TGG - chr7_3:44598488-44598507 Msa1105740:intron 35.0%
! GGTGATTTTGTGAAAGCTAA+TGG - chr7_3:44598594-44598613 Msa1105740:CDS 35.0%
TCACAATGAAATCTCCTTCT+TGG + chr7_3:44598623-44598642 None:intergenic 35.0%
TGATCTCAATTCAATTGTGC+CGG + chr7_3:44598742-44598761 None:intergenic 35.0%
! AAATCGGTTTAAACCAACCA+CGG + chr7_3:44598835-44598854 None:intergenic 35.0%
! AGAACAAATGACTCGAGTTT+TGG + chr7_3:44598968-44598987 None:intergenic 35.0%
TGATAAGAGGAGTTAAAGTG+AGG - chr7_3:44599100-44599119 Msa1105740:intron 35.0%
AAACCAGATGCAAAAAAAGC+AGG - chr7_3:44599138-44599157 Msa1105740:CDS 35.0%
!!! TTTCCTGCTTTTTTTGCATC+TGG + chr7_3:44599144-44599163 None:intergenic 35.0%
AAATCACAGAAAAACCAGCA+TGG - chr7_3:44599162-44599181 Msa1105740:CDS 35.0%
AATCACAGAAAAACCAGCAT+GGG - chr7_3:44599163-44599182 Msa1105740:CDS 35.0%
AATAATGCAGCAAATTCAGC+TGG - chr7_3:44599186-44599205 Msa1105740:CDS 35.0%
!!! TTTTTTCGCTTTGGTGAAGA+TGG + chr7_3:44599237-44599256 None:intergenic 35.0%
CATGGAAAATCAGGTAAAGG+TGG + chr7_3:44595774-44595793 None:intergenic 40.0%
GATGACATGCATGGAAAATC+AGG + chr7_3:44595783-44595802 None:intergenic 40.0%
! GATGATGATGATGACATGCA+TGG + chr7_3:44595792-44595811 None:intergenic 40.0%
!! GTTGATGACAAAGTTGTTGG+AGG + chr7_3:44596011-44596030 None:intergenic 40.0%
!! GCAGTTGATGACAAAGTTGT+TGG + chr7_3:44596014-44596033 None:intergenic 40.0%
CAACAACAGCAACAAGATCT+TGG - chr7_3:44596050-44596069 Msa1105740:intron 40.0%
! AATGATGTTGTTGTTGGTGG+TGG - chr7_3:44596083-44596102 Msa1105740:intron 40.0%
TGAAGAGGAAAACCCTTTAG+TGG - chr7_3:44596205-44596224 Msa1105740:CDS 40.0%
! GCAACAAGTTCAAGTTCAAG+AGG - chr7_3:44596241-44596260 Msa1105740:CDS 40.0%
! CGATGATAGTGCATGATGAT+AGG - chr7_3:44596291-44596310 Msa1105740:intron 40.0%
! TCCTCGATATTCACTTGTTG+CGG + chr7_3:44596326-44596345 None:intergenic 40.0%
! NNNNNNNNNGTCGGCTCAGC+CGG - chr7_3:44596463-44596482 Msa1105740:intron 40.0%
! ATGTATTGGCAGACTATGAC+AGG + chr7_3:44596520-44596539 None:intergenic 40.0%
ATCCAGGTAACTGGATGTAT+TGG + chr7_3:44596534-44596553 None:intergenic 40.0%
TCTGATCCACTTGCAAGATT+AGG + chr7_3:44596604-44596623 None:intergenic 40.0%
AGAAGCTAGAAAGAAGAGGA+TGG + chr7_3:44596695-44596714 None:intergenic 40.0%
! CTAGCTTCTTTTGTAGCAGA+AGG - chr7_3:44596706-44596725 Msa1105740:intron 40.0%
! CCTCATGGTATGAATTTTGG+AGG + chr7_3:44596799-44596818 None:intergenic 40.0%
CCTCCAAAATTCATACCATG+AGG - chr7_3:44596796-44596815 Msa1105740:intron 40.0%
AACAATCTGCTACAACCTCA+TGG + chr7_3:44596814-44596833 None:intergenic 40.0%
CGTGTTTCAACCAAACATCA+TGG + chr7_3:44597068-44597087 None:intergenic 40.0%
!!! GTTGTGTTTTGGTTCTGACA+TGG - chr7_3:44597114-44597133 Msa1105740:intron 40.0%
!! GATTAGGTGGTGGAAAAGAA+GGG + chr7_3:44597275-44597294 None:intergenic 40.0%
!! AGATTAGGTGGTGGAAAAGA+AGG + chr7_3:44597276-44597295 None:intergenic 40.0%
!! GAAAGTGCTGCTAAGAGATT+AGG + chr7_3:44597291-44597310 None:intergenic 40.0%
ATCTAACAAAGACAGCGTCT+CGG + chr7_3:44597355-44597374 None:intergenic 40.0%
! TGAGTATGGTTTTCTTGGAG+TGG + chr7_3:44597383-44597402 None:intergenic 40.0%
GATGAATTAGGTGCATGTGA+TGG + chr7_3:44597420-44597439 None:intergenic 40.0%
AATTCTGTGTCTGTATGGTG+GGG + chr7_3:44597599-44597618 None:intergenic 40.0%
GAATTCTGTGTCTGTATGGT+GGG + chr7_3:44597600-44597619 None:intergenic 40.0%
AGAATTCTGTGTCTGTATGG+TGG + chr7_3:44597601-44597620 None:intergenic 40.0%
GTGAGAATTCTGTGTCTGTA+TGG + chr7_3:44597604-44597623 None:intergenic 40.0%
CTACGATATCCGCATACAAA+TGG + chr7_3:44597888-44597907 None:intergenic 40.0%
! AGGAACCTCAAGTTCTTTTC+AGG + chr7_3:44598065-44598084 None:intergenic 40.0%
CTTGAGGTTCCTTCTACAAA+AGG - chr7_3:44598073-44598092 Msa1105740:intron 40.0%
!!! GGTTTTGAAGCAAAGTGATG+TGG - chr7_3:44598094-44598113 Msa1105740:intron 40.0%
AACACATTTGCCAGAATTGG+AGG - chr7_3:44598246-44598265 Msa1105740:intron 40.0%
ACATTGGAACTTCTCGAGTT+TGG - chr7_3:44598299-44598318 Msa1105740:intron 40.0%
! GAGTTTGGAATATGCGTTAC+AGG - chr7_3:44598314-44598333 Msa1105740:intron 40.0%
! CTTCTTGGAGCATCAGATAT+TGG - chr7_3:44598447-44598466 Msa1105740:intron 40.0%
ATTGGCCAAACAACAAAAGC+AGG - chr7_3:44598465-44598484 Msa1105740:intron 40.0%
!! AAAGCTAATGGACTCCAAGA+AGG - chr7_3:44598606-44598625 Msa1105740:CDS 40.0%
GATTTGGATTTCCTAGTTCC+CGG - chr7_3:44598720-44598739 Msa1105740:CDS 40.0%
GATCTCAATTCAATTGTGCC+GGG + chr7_3:44598741-44598760 None:intergenic 40.0%
! TTCAATTAGTTGAACGGGCT+TGG + chr7_3:44598792-44598811 None:intergenic 40.0%
! TGGTTGAATCGATTCAACCA+TGG + chr7_3:44598922-44598941 None:intergenic 40.0%
TCGATTCAACCAATTAACCG+TGG - chr7_3:44598930-44598949 Msa1105740:CDS 40.0%
AATTTAGACGGTTGGATGGA+TGG + chr7_3:44598991-44599010 None:intergenic 40.0%
TTGCAATTTAGACGGTTGGA+TGG + chr7_3:44598995-44599014 None:intergenic 40.0%
GGAACTGCAGTGGATAATAA+TGG - chr7_3:44599207-44599226 Msa1105740:CDS 40.0%
AGATGCAGAGGAAGAAGAAG+AGG + chr7_3:44595874-44595893 None:intergenic 45.0%
TTCTTCCTCTGCAGCTTCTT+GGG - chr7_3:44595893-44595912 Msa1105740:intron 45.0%
ACCGCAACAAGTGAATATCG+AGG - chr7_3:44596322-44596341 Msa1105740:intron 45.0%
ATTGGCAGACTATGACAGGT+GGG + chr7_3:44596516-44596535 None:intergenic 45.0%
TATTGGCAGACTATGACAGG+TGG + chr7_3:44596517-44596536 None:intergenic 45.0%
TGCCAATACATCCAGTTACC+TGG - chr7_3:44596529-44596548 Msa1105740:CDS 45.0%
CTCATGCAAATCCAGGTAAC+TGG + chr7_3:44596543-44596562 None:intergenic 45.0%
AATTGCACCAATGTTGCTGC+TGG + chr7_3:44596571-44596590 None:intergenic 45.0%
GATCCACTTGCAAGATTAGG+TGG + chr7_3:44596601-44596620 None:intergenic 45.0%
GGCGGTTTATGTCTCATCAT+AGG + chr7_3:44596663-44596682 None:intergenic 45.0%
CTAGAAAGAAGAGGATGGCT+CGG + chr7_3:44596690-44596709 None:intergenic 45.0%
!! GGTGATAGGTTGATGAGGTT+AGG + chr7_3:44596733-44596752 None:intergenic 45.0%
AACCTCATCAACCTATCACC+AGG - chr7_3:44596733-44596752 Msa1105740:CDS 45.0%
! TATCAGTTGTTTCCTGGTCC+TGG + chr7_3:44596754-44596773 None:intergenic 45.0%
TTAGTAGCAGCAGGCTGATA+AGG - chr7_3:44596925-44596944 Msa1105740:intron 45.0%
TAGTAGCAGCAGGCTGATAA+GGG - chr7_3:44596926-44596945 Msa1105740:intron 45.0%
TCACAACCAATGGTTGGAGT+TGG + chr7_3:44597006-44597025 None:intergenic 45.0%
GGTTGTGAAAATTGCTGTGG+AGG - chr7_3:44597018-44597037 Msa1105740:intron 45.0%
! TGCTGTGGAGGTACAATAAG+AGG - chr7_3:44597030-44597049 Msa1105740:intron 45.0%
TTGAAACACGCGTTCGATTC+AGG - chr7_3:44597078-44597097 Msa1105740:intron 45.0%
! AGTGCTGCTAAGAGATTAGG+TGG + chr7_3:44597288-44597307 None:intergenic 45.0%
ACAGACACAGAATTCTCACC+AGG - chr7_3:44597605-44597624 Msa1105740:intron 45.0%
CAGACACAGAATTCTCACCA+GGG - chr7_3:44597606-44597625 Msa1105740:intron 45.0%
TCCACAAACCTGTCTCCTAT+CGG + chr7_3:44597643-44597662 None:intergenic 45.0%
!! TGGCTTTAGAAGTCTCTGCA+AGG - chr7_3:44597831-44597850 Msa1105740:intron 45.0%
!! GGCTTTAGAAGTCTCTGCAA+GGG - chr7_3:44597832-44597851 Msa1105740:intron 45.0%
GGAAGCCTGAAAAGAACTTG+AGG - chr7_3:44598057-44598076 Msa1105740:intron 45.0%
CAAAGTGATGTGGGAAGTCT+GGG - chr7_3:44598104-44598123 Msa1105740:intron 45.0%
AAAGTGATGTGGGAAGTCTG+GGG - chr7_3:44598105-44598124 Msa1105740:intron 45.0%
ATTCAATTGTGCCGGGAACT+AGG + chr7_3:44598734-44598753 None:intergenic 45.0%
! TTAGTTGAACGGGCTTGGTT+TGG + chr7_3:44598787-44598806 None:intergenic 45.0%
! TTCGTCGTCTTGTTCAACCA+TGG - chr7_3:44598902-44598921 Msa1105740:CDS 45.0%
GTTAAAGTGAGGCAGCAACA+AGG - chr7_3:44599111-44599130 Msa1105740:intron 45.0%
TTGCTGCATTATTCCCATGC+TGG + chr7_3:44599179-44599198 None:intergenic 45.0%
AAATTCAGCTGGAACTGCAG+TGG - chr7_3:44599197-44599216 Msa1105740:CDS 45.0%
TGCAGAGGAAGAAGATGCAG+AGG + chr7_3:44595886-44595905 None:intergenic 50.0%
CTTCTTCCTCTGCAGCTTCT+TGG - chr7_3:44595892-44595911 Msa1105740:intron 50.0%
!! GATGTTGTTGTTGGTGGTGG+TGG - chr7_3:44596086-44596105 Msa1105740:intron 50.0%
TTCCTTGGCTCCTGTTGTTC+CGG + chr7_3:44596485-44596504 None:intergenic 50.0%
GGTGGTTCTCATGCAAATCC+AGG + chr7_3:44596550-44596569 None:intergenic 50.0%
AGAACCACCAGCAGCAACAT+TGG - chr7_3:44596561-44596580 Msa1105740:CDS 50.0%
CCACTTGCAAGATTAGGTGG+TGG + chr7_3:44596598-44596617 None:intergenic 50.0%
CCACCACCTAATCTTGCAAG+TGG - chr7_3:44596595-44596614 Msa1105740:CDS 50.0%
!! GTCCTGGTGATAGGTTGATG+AGG + chr7_3:44596738-44596757 None:intergenic 50.0%
ATCAACCTATCACCAGGACC+AGG - chr7_3:44596739-44596758 Msa1105740:CDS 50.0%
TGTTTCCTGGTCCTGGTGAT+AGG + chr7_3:44596747-44596766 None:intergenic 50.0%
CCAATGGTTGGAGTTGGAGT+TGG + chr7_3:44597000-44597019 None:intergenic 50.0%
CCAACTCCAACTCCAACCAT+TGG - chr7_3:44596997-44597016 Msa1105740:intron 50.0%
GCTGCTAAGAGATTAGGTGG+TGG + chr7_3:44597285-44597304 None:intergenic 50.0%
CCACAAACCTGTCTCCTATC+GGG + chr7_3:44597642-44597661 None:intergenic 50.0%
GGGCATAGCAACCACAATTG+TGG - chr7_3:44597852-44597871 Msa1105740:intron 50.0%
GCAAAGTGATGTGGGAAGTC+TGG - chr7_3:44598103-44598122 Msa1105740:intron 50.0%
CCATCTCTTGCCTCCAATTC+TGG + chr7_3:44598259-44598278 None:intergenic 50.0%
CCAGAATTGGAGGCAAGAGA+TGG - chr7_3:44598256-44598275 Msa1105740:intron 50.0%
TGAATCCTCGGGTTAAACCG+TGG - chr7_3:44598815-44598834 Msa1105740:CDS 50.0%
AACCAATTAACCGTGGCTCG+TGG - chr7_3:44598937-44598956 Msa1105740:CDS 50.0%
AACAGCCCAAGAAGCTGCAG+AGG + chr7_3:44595901-44595920 None:intergenic 55.0%
!! TGGTGGTGGTGGTGATTGCA+TGG - chr7_3:44596097-44596116 Msa1105740:intron 55.0%
TGCACCAATGTTGCTGCTGG+TGG + chr7_3:44596568-44596587 None:intergenic 55.0%
! AGAAGAGGATGGCTCGGCAA+CGG + chr7_3:44596684-44596703 None:intergenic 55.0%
GCGTCTCGGCGAATGATTTG+AGG + chr7_3:44597341-44597360 None:intergenic 55.0%
GTCTCCTATCGGGTGCACTT+CGG + chr7_3:44597632-44597651 None:intergenic 55.0%
AAGTGCACCCGATAGGAGAC+AGG - chr7_3:44597632-44597651 Msa1105740:intron 55.0%
CCCGATAGGAGACAGGTTTG+TGG - chr7_3:44597639-44597658 Msa1105740:intron 55.0%
!! TGAACGGGCTTGGTTTGGTC+TGG + chr7_3:44598782-44598801 None:intergenic 55.0%
TCCTCGGGTTAAACCGTGGT+TGG - chr7_3:44598819-44598838 Msa1105740:CDS 55.0%
ACCAACCACGGTTTAACCCG+AGG + chr7_3:44598823-44598842 None:intergenic 55.0%
GACCACGAGCCACGGTTAAT+TGG + chr7_3:44598942-44598961 None:intergenic 55.0%
TTTGGTGAGACCACGAGCCA+CGG + chr7_3:44598950-44598969 None:intergenic 55.0%
AGCCGGAACAACAGGAGCCA+AGG - chr7_3:44596480-44596499 Msa1105740:intron 60.0%
AGGTGGGACAGCAGCTTCCT+TGG + chr7_3:44596500-44596519 None:intergenic 60.0%
GGGCGATCACGATCTACTGC+AGG + chr7_3:44597579-44597598 None:intergenic 60.0%
! GTCGGCTCAGCCGGAACAAC+AGG - chr7_3:44596472-44596491 Msa1105740:intron 65.0%
! AGAGGATGGCTCGGCAACGG+CGG + chr7_3:44596681-44596700 None:intergenic 65.0%
TATCGGGTGCACTTCGGCCC+TGG + chr7_3:44597626-44597645 None:intergenic 65.0%
AGGGCCGAAGTGCACCCGAT+AGG - chr7_3:44597625-44597644 Msa1105740:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 44595603 44599260 44595603 ID=Msa1105740;Name=Msa1105740
chr7_3 mRNA 44595603 44599260 44595603 ID=Msa1105740-mRNA-1;Parent=Msa1105740;Name=Msa1105740-mRNA-1;_AED=0.16;_eAED=0.18;_QI=0|0|0|0.9|0.44|0.4|10|0|378
chr7_3 exon 44599137 44599260 44599137 ID=Msa1105740-mRNA-1:exon:9205;Parent=Msa1105740-mRNA-1
chr7_3 exon 44598717 44598956 44598717 ID=Msa1105740-mRNA-1:exon:9204;Parent=Msa1105740-mRNA-1
chr7_3 exon 44598505 44598698 44598505 ID=Msa1105740-mRNA-1:exon:9203;Parent=Msa1105740-mRNA-1
chr7_3 exon 44597689 44597763 44597689 ID=Msa1105740-mRNA-1:exon:9202;Parent=Msa1105740-mRNA-1
chr7_3 exon 44597210 44597254 44597210 ID=Msa1105740-mRNA-1:exon:9201;Parent=Msa1105740-mRNA-1
chr7_3 exon 44596718 44596768 44596718 ID=Msa1105740-mRNA-1:exon:9200;Parent=Msa1105740-mRNA-1
chr7_3 exon 44596528 44596628 44596528 ID=Msa1105740-mRNA-1:exon:9199;Parent=Msa1105740-mRNA-1
chr7_3 exon 44596354 44596400 44596354 ID=Msa1105740-mRNA-1:exon:9198;Parent=Msa1105740-mRNA-1
chr7_3 exon 44596171 44596268 44596171 ID=Msa1105740-mRNA-1:exon:9197;Parent=Msa1105740-mRNA-1
chr7_3 exon 44595603 44595764 44595603 ID=Msa1105740-mRNA-1:exon:9196;Parent=Msa1105740-mRNA-1
chr7_3 CDS 44599137 44599260 44599137 ID=Msa1105740-mRNA-1:cds;Parent=Msa1105740-mRNA-1
chr7_3 CDS 44598717 44598956 44598717 ID=Msa1105740-mRNA-1:cds;Parent=Msa1105740-mRNA-1
chr7_3 CDS 44598505 44598698 44598505 ID=Msa1105740-mRNA-1:cds;Parent=Msa1105740-mRNA-1
chr7_3 CDS 44597689 44597763 44597689 ID=Msa1105740-mRNA-1:cds;Parent=Msa1105740-mRNA-1
chr7_3 CDS 44597210 44597254 44597210 ID=Msa1105740-mRNA-1:cds;Parent=Msa1105740-mRNA-1
chr7_3 CDS 44596718 44596768 44596718 ID=Msa1105740-mRNA-1:cds;Parent=Msa1105740-mRNA-1
chr7_3 CDS 44596528 44596628 44596528 ID=Msa1105740-mRNA-1:cds;Parent=Msa1105740-mRNA-1
chr7_3 CDS 44596354 44596400 44596354 ID=Msa1105740-mRNA-1:cds;Parent=Msa1105740-mRNA-1
chr7_3 CDS 44596171 44596268 44596171 ID=Msa1105740-mRNA-1:cds;Parent=Msa1105740-mRNA-1
chr7_3 CDS 44595603 44595764 44595603 ID=Msa1105740-mRNA-1:cds;Parent=Msa1105740-mRNA-1
Gene Sequence

>Msa1105740

ATGGAGTGTGGTTTAGATCTGCATGCAAAGTTGGTGAATGAAACAGAACAAGTTGGTTTTGGAAATTTAGCAGAAGAAAATTGGCTTAATAATACTACAAATGATCAAGATGGTGATCTTTTAGCTTCTTGGGCTGTTTTGAAATCAGATGTTGAAGTAGATCATCAAGGTTATAGTAACATGCATCAAAAACATGGTCATCCATTAGATTATCATCATGGTCATCCTCCAACAACTTTGTCATCAACTGCTTCTATGGAGATTTCTCAACAACAGCAACAAGATCTTGGTGTTTCTAATAATGATGTTGTTGTTGGTGGTGGTGGTGATTGCATGGATGATGTTAACATTATGGATACTTTTGAAGCCAATGAATTTTTTGACCCTGCTTCGATTTTTCAAAATGAAGAGGAAAACCCTTTAGTGGATTTCACACAAGAGCAACAAGTTCAAGTTCAAGAGGGGTATCAACAACAACATCAACAAGTTCCGATGATAGTGCATGATGATAGGGAAAATAAACCGCAACAAGTGAATATCGAGGAGAATAACGACGATGTGCAAATGCGTTTGTTGTGTTTTGGTTCTGACATGGATCTTGAAACTGTTGTTGTTGAGGAACAAGATTTGAAGACACAGAATTCTCACCAGGGCCGAAGTGCACCCGATAGGAGACAGGTTTTGAAGCAAAGTGATGTGGGAAGTCTGGGGAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACACATTTGCCAGAATTGGAGGCAAGAGATGGAATTTCGATTACAATGGAAGACATTGGAACTTCTCGAGTTTGGAATATGCGTTACAGATATTGGCCAAACAACAAAAGCAGGATGTATTTGCTAGAGAACACTGGTGATTTTGTGAAAGCTAATGGACTCCAAGAAGGAGATTTCATTGTGATATATTCTGATGTGAAGTGTGGCAAATTTGTAAGAGCCTTCTCTTATAATATGATAAGAGGAGTTAAAGTGAGGCAGCAACAAGGAACAAAACCAGATGCAAAAAAAGCAGGAAAATCACAGAAAAACCAGCATGGGAATAATGCAGCAAATTCAGCTGGAACTGCAGTGGATAATAATGGCACGCCATCTTCACCAAAGCGAAAAAAATGA

Protein sequence

>Msa1105740

MECGLDLHAKLVNETEQVGFGNLAEENWLNNTTNDQDGDLLASWAVLKSDVEVDHQGYSNMHQKHGHPLDYHHGHPPTTLSSTASMEISQQQQQDLGVSNNDVVVGGGGDCMDDVNIMDTFEANEFFDPASIFQNEEENPLVDFTQEQQVQVQEGYQQQHQQVPMIVHDDRENKPQQVNIEENNDDVQMRLLCFGSDMDLETVVVEEQDLKTQNSHQGRSAPDRRQVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKFVRAFSYNMIRGVKVRQQQGTKPDAKKAGKSQKNQHGNNAANSAGTAVDNNGTPSSPKRKK*