AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1105760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105760 MtrunA17_Chr7g0237921 91.292 356 23 2 1 356 1 348 0.0 551
Msa1105760 MtrunA17_Chr4g0010151 47.668 386 126 16 1 343 1 353 6.45e-87 266
Msa1105760 MtrunA17_Chr4g0031411 42.898 352 160 12 1 332 1 331 3.91e-71 225
Msa1105760 MtrunA17_Chr7g0223311 54.795 146 58 4 1 142 1 142 1.11e-43 154
Msa1105760 MtrunA17_Chr2g0328021 39.695 262 119 11 1 260 1 225 2.94e-43 151
Msa1105760 MtrunA17_Chr3g0126201 65.000 80 28 0 57 136 32 111 2.36e-31 120
Msa1105760 MtrunA17_Chr8g0374251 67.105 76 24 1 77 152 69 143 1.01e-30 119
Msa1105760 MtrunA17_Chr3g0127201 68.000 75 20 1 57 131 12 82 1.28e-30 118
Msa1105760 MtrunA17_Chr3g0117601 64.773 88 24 3 43 126 27 111 1.84e-30 118
Msa1105760 MtrunA17_Chr2g0326001 80.328 61 12 0 70 130 34 94 3.00e-30 117
Msa1105760 MtrunA17_Chr4g0030051 83.051 59 10 0 70 128 35 93 7.97e-30 115
Msa1105760 MtrunA17_Chr2g0282441 67.606 71 22 1 58 127 6 76 3.87e-29 115
Msa1105760 MtrunA17_Chr5g0411951 58.716 109 40 1 73 181 40 143 6.24e-29 114
Msa1105760 MtrunA17_Chr1g0177251 82.143 56 10 0 75 130 11 66 1.30e-28 112
Msa1105760 MtrunA17_Chr8g0346551 72.464 69 15 1 78 142 26 94 1.51e-28 112
Msa1105760 MtrunA17_Chr8g0367161 71.875 64 18 0 72 135 28 91 1.61e-28 113
Msa1105760 MtrunA17_Chr8g0374111 59.434 106 26 4 55 152 17 113 1.68e-28 110
Msa1105760 MtrunA17_Chr4g0061761 88.000 50 6 0 77 126 41 90 3.20e-27 109
Msa1105760 MtrunA17_Chr8g0341671 72.464 69 16 2 68 136 13 78 5.64e-27 106
Msa1105760 MtrunA17_Chr1g0188851 53.659 82 36 1 53 132 18 99 9.97e-27 107
Msa1105760 MtrunA17_Chr2g0282511 87.500 48 6 0 77 124 46 93 9.45e-26 105
Msa1105760 MtrunA17_Chr2g0282051 63.889 72 17 2 69 132 31 101 1.33e-25 103
Msa1105760 MtrunA17_Chr4g0047761 80.000 55 10 1 78 132 74 127 3.88e-25 103
Msa1105760 MtrunA17_Chr2g0308011 85.417 48 7 0 77 124 38 85 7.12e-25 100
Msa1105760 MtrunA17_Chr3g0092111 70.175 57 17 0 78 134 138 194 1.02e-23 101
Msa1105760 MtrunA17_Chr6g0453321 69.643 56 17 0 78 133 138 193 1.74e-22 98.2
Msa1105760 MtrunA17_Chr7g0217581 59.701 67 27 0 78 144 234 300 4.15e-22 97.4
Msa1105760 MtrunA17_Chr8g0355261 66.667 54 18 0 78 131 120 173 4.73e-22 96.7
Msa1105760 MtrunA17_Chr7g0254161 41.228 114 56 1 77 179 102 215 5.83e-22 96.3
Msa1105760 MtrunA17_Chr2g0283811 51.948 77 34 1 78 154 49 122 5.96e-22 91.3
Msa1105760 MtrunA17_Chr6g0460721 64.815 54 19 0 77 130 90 143 2.85e-21 93.2
Msa1105760 MtrunA17_Chr4g0042481 67.308 52 17 0 78 129 124 175 3.11e-21 94.4
Msa1105760 MtrunA17_Chr5g0417561 57.333 75 26 1 78 152 121 189 1.32e-20 91.7
Msa1105760 MtrunA17_Chr5g0417571 59.677 62 25 0 78 139 140 201 1.61e-20 90.9
Msa1105760 MtrunA17_Chr5g0417551 64.407 59 21 0 78 136 129 187 5.47e-20 90.1
Msa1105760 MtrunA17_Chr6g0460731 55.738 61 25 1 71 129 89 149 6.20e-20 89.7
Msa1105760 MtrunA17_Chr5g0417601 67.308 52 17 0 78 129 142 193 9.84e-20 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105760 AT3G55370.2 37.736 371 175 15 1 341 1 345 3.06e-51 174
Msa1105760 AT3G55370.1 38.136 354 166 14 1 341 1 314 3.60e-50 171
Msa1105760 AT3G55370.3 40.000 300 142 11 48 341 92 359 2.32e-45 159
Msa1105760 AT2G37590.1 40.217 276 108 9 1 240 1 255 2.94e-44 155
Msa1105760 AT5G02460.1 85.526 76 11 0 55 130 74 149 5.84e-43 154
Msa1105760 AT1G07640.1 72.152 79 22 0 58 136 3 81 9.06e-36 131
Msa1105760 AT1G07640.2 72.152 79 22 0 58 136 59 137 9.39e-36 133
Msa1105760 AT1G07640.3 72.152 79 22 0 58 136 67 145 1.39e-35 132
Msa1105760 AT5G60200.1 71.084 83 21 1 73 152 52 134 7.59e-35 129
Msa1105760 AT2G28810.1 46.053 152 50 6 1 127 1 145 1.20e-33 127
Msa1105760 AT2G28510.1 55.556 117 40 2 75 191 47 151 3.67e-32 122
Msa1105760 AT3G52440.1 73.913 69 18 0 73 141 22 90 8.82e-32 120
Msa1105760 AT3G52440.2 73.913 69 18 0 73 141 41 109 1.51e-31 120
Msa1105760 AT2G28810.2 73.239 71 18 1 58 127 58 128 1.71e-31 121
Msa1105760 AT5G60850.1 60.870 92 33 1 63 154 38 126 2.19e-31 120
Msa1105760 AT3G45610.1 70.000 70 21 0 73 142 37 106 3.15e-31 119
Msa1105760 AT1G21340.1 62.353 85 30 1 78 162 40 122 1.52e-29 114
Msa1105760 AT5G65590.1 53.608 97 38 2 35 131 7 96 4.70e-29 114
Msa1105760 AT1G51700.1 66.250 80 25 2 69 147 27 105 4.90e-29 111
Msa1105760 AT4G21050.1 40.476 168 72 4 74 213 22 189 5.62e-29 112
Msa1105760 AT5G62940.1 48.438 128 59 4 1 126 1 123 1.10e-28 114
Msa1105760 AT1G28310.1 82.143 56 10 0 77 132 28 83 1.80e-28 113
Msa1105760 AT3G21270.1 48.175 137 58 3 77 213 30 153 1.86e-28 110
Msa1105760 AT3G61850.1 46.715 137 54 5 10 133 1 131 2.08e-28 112
Msa1105760 AT3G61850.2 55.446 101 40 3 38 133 19 119 2.64e-28 112
Msa1105760 AT3G61850.3 55.446 101 40 3 38 133 19 119 2.64e-28 112
Msa1105760 AT1G28310.2 82.143 56 10 0 77 132 52 107 2.80e-28 113
Msa1105760 AT3G61850.4 46.715 137 54 5 10 133 1 131 3.33e-28 112
Msa1105760 AT3G61850.5 74.603 63 14 1 73 133 57 119 3.79e-28 112
Msa1105760 AT4G24060.1 73.770 61 16 0 70 130 47 107 4.36e-28 112
Msa1105760 AT4G38000.1 61.446 83 30 1 70 152 35 115 6.50e-27 107
Msa1105760 AT3G50410.1 55.682 88 36 2 49 133 1 88 7.12e-27 107
Msa1105760 AT5G66940.1 50.450 111 43 4 37 145 2 102 8.99e-27 106
Msa1105760 AT4G00940.1 76.271 59 13 1 72 130 65 122 1.08e-26 107
Msa1105760 AT4G00940.3 76.271 59 13 1 72 130 65 122 1.08e-26 107
Msa1105760 AT4G00940.2 76.271 59 13 1 72 130 65 122 1.08e-26 107
Msa1105760 AT1G64620.1 48.344 151 57 5 70 213 43 179 8.24e-25 103
Msa1105760 AT2G46590.1 79.245 53 9 1 73 123 63 115 1.52e-24 103
Msa1105760 AT2G46590.2 79.245 53 9 1 73 123 75 127 1.75e-24 103
Msa1105760 AT1G47655.1 80.851 47 9 0 78 124 31 77 5.77e-23 95.5
Msa1105760 AT4G21040.1 74.545 55 13 1 78 132 27 80 9.73e-23 95.5
Msa1105760 AT5G62430.1 71.154 52 15 0 78 129 56 107 1.44e-22 96.7
Msa1105760 AT3G47500.1 62.121 66 25 0 78 143 112 177 1.75e-22 98.6
Msa1105760 AT4G21080.1 54.430 79 32 1 78 156 27 101 7.37e-22 93.6
Msa1105760 AT1G69570.1 71.154 52 15 0 78 129 134 185 8.02e-22 95.9
Msa1105760 AT2G34140.1 69.231 52 16 0 78 129 60 111 2.30e-21 90.1
Msa1105760 AT1G26790.1 67.308 52 17 0 78 129 113 164 2.54e-21 94.4
Msa1105760 AT1G29160.1 69.231 52 16 0 78 129 64 115 3.00e-21 90.1
Msa1105760 AT5G39660.3 69.231 52 16 0 78 129 140 191 8.07e-21 93.6
Msa1105760 AT5G39660.1 69.231 52 16 0 78 129 140 191 8.07e-21 93.6
Msa1105760 AT5G39660.2 69.231 52 16 0 78 129 140 191 8.07e-21 93.6
Msa1105760 AT4G21030.1 44.000 75 42 0 74 148 19 93 2.21e-14 71.2

Find 133 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTCTCTCCCACCATATA+TGG 0.222301 7_3:+44642904 Msa1105760:CDS
CTCCAACCGGGACACTTCTA+AGG 0.229004 7_3:-44643405 None:intergenic
TTCCAATATTGTTCACTATT+AGG 0.263046 7_3:-44644009 None:intergenic
AAATAATTCTAGTGTGAAAA+TGG 0.280136 7_3:+44643909 Msa1105760:CDS
ATCTCATCGGTGGTGGCGTT+GGG 0.300347 7_3:-44643543 None:intergenic
TTCCATATCGGAAGCTCTTT+AGG 0.302834 7_3:+44643661 Msa1105760:CDS
GGTGATCACCTAAGTGAAAT+AGG 0.308942 7_3:+44643589 Msa1105760:CDS
AGTTTGAAACTCCACATATA+TGG 0.315984 7_3:+44644201 Msa1105760:three_prime_UTR
ATCCTAATAGTGAACAATAT+TGG 0.316935 7_3:+44644007 Msa1105760:CDS
GAATCAATCTAGACAATTCT+TGG 0.322625 7_3:+44643936 Msa1105760:CDS
GCAAGGCTTGTCGAAGGTAT+TGG 0.355195 7_3:+44643368 Msa1105760:CDS
AGTTGTTTGCAGAGCTAGTT+TGG 0.357904 7_3:-44643501 None:intergenic
CACCTAAAGAGCTTCCGATA+TGG 0.360566 7_3:-44643663 None:intergenic
TTCTTCTAATTATTAGGTTT+AGG 0.379272 7_3:+44644358 Msa1105760:three_prime_UTR
AGAGAGGGATCAAAGGGTTA+AGG 0.394747 7_3:-44642699 None:intergenic
ACCTGTTGATGCCAGTTGGC+TGG 0.401216 7_3:-44642929 None:intergenic
TAAACCATGGTTATTCCTCT+TGG 0.404319 7_3:-44642881 None:intergenic
CAGTTGGCTGGATCCATATA+TGG 0.404780 7_3:-44642917 None:intergenic
AAGAAAGAAAGAAAGAAGAG+AGG 0.409856 7_3:-44642715 None:intergenic
AGAAAGAAGAGAGGGATCAA+AGG 0.410619 7_3:-44642706 None:intergenic
AATCTCATCGGTGGTGGCGT+TGG 0.416328 7_3:-44643544 None:intergenic
GGAGACTTAAATTTCCATAT+CGG 0.426564 7_3:+44643649 Msa1105760:CDS
CTTCGACAACCACCTCCAAC+CGG 0.428779 7_3:-44643418 None:intergenic
CATGAGGTTGTGATGGTGTC+AGG 0.430234 7_3:-44643192 None:intergenic
TCCAGCCAACTGGCATCAAC+AGG 0.444071 7_3:+44642928 Msa1105760:CDS
GTCTTGAGATTGATAATAGT+AGG 0.444696 7_3:-44644176 None:intergenic
TGAGCTAGCCGGCGACTTGG+AGG 0.451164 7_3:-44643473 None:intergenic
GGATCAAAGGGTTAAGGAGG+TGG 0.451646 7_3:-44642693 None:intergenic
CTACTACAAATTCCAACTAT+AGG 0.452160 7_3:+44644103 Msa1105760:CDS
AAGGGAAATTGATGAGTTTG+TGG 0.457842 7_3:-44643766 None:intergenic
CCGCTACCACCACCTTCAAA+TGG 0.459662 7_3:-44643832 None:intergenic
AGTGAAATAGGACTAAACTA+TGG 0.460875 7_3:+44643601 Msa1105760:CDS
GCCCTATCTGCCATCGAACC+TGG 0.462544 7_3:-44643229 None:intergenic
GCCACCACCGATGAGATTCA+TGG 0.464462 7_3:+44643549 Msa1105760:CDS
GAAAGAAGAGAGGGATCAAA+GGG 0.466314 7_3:-44642705 None:intergenic
AATCAATCTAGACAATTCTT+GGG 0.469852 7_3:+44643937 Msa1105760:CDS
GACCAGGTTCGATGGCAGAT+AGG 0.475722 7_3:+44643227 Msa1105760:CDS
TGCGTATGGTGGTGTGTCTA+AGG 0.477118 7_3:+44643879 Msa1105760:CDS
AAAGATTAAAACCTCAAAAG+TGG 0.482186 7_3:-44644291 None:intergenic
CATATATGGATCCAGCCAAC+TGG 0.482920 7_3:+44642918 Msa1105760:CDS
ATGGCTCCTTTGCATCATCT+AGG 0.483090 7_3:+44643568 Msa1105760:CDS
CATTGCTCAAAATTGCCAAC+TGG 0.483496 7_3:-44643736 None:intergenic
TAAGATAGAATGAAAACCCT+AGG 0.483769 7_3:+44644244 Msa1105760:three_prime_UTR
ATAAAGTTATGTCCTATAGT+TGG 0.484745 7_3:-44644115 None:intergenic
AGAATCTAAGTAACATCCCT+AGG 0.486444 7_3:-44644261 None:intergenic
AAAGAGAGCTATCGGGGAAT+GGG 0.486965 7_3:+44642577 Msa1105760:five_prime_UTR
ACCAGGTTCGATGGCAGATA+GGG 0.488883 7_3:+44643228 Msa1105760:CDS
GAAGGTGGTGGTAGCGGTGG+TGG 0.489455 7_3:+44643838 Msa1105760:CDS
AGGTTCGATGGTTGAGGCTG+TGG 0.490154 7_3:-44643172 None:intergenic
TCTACTCCAATGGGAGGTGT+TGG 0.490285 7_3:+44643628 Msa1105760:CDS
CCATTTGAAGGTGGTGGTAG+CGG 0.496097 7_3:+44643832 Msa1105760:CDS
CTTAGAAGTGTCCCGGTTGG+AGG 0.496913 7_3:+44643406 Msa1105760:CDS
GAGGGATCAAAGGGTTAAGG+AGG 0.504853 7_3:-44642696 None:intergenic
AGAAGTGTCCCGGTTGGAGG+TGG 0.505449 7_3:+44643409 Msa1105760:CDS
AAAAGAGAGCTATCGGGGAA+TGG 0.509451 7_3:+44642576 Msa1105760:five_prime_UTR
TCTTGAGATTGATAATAGTA+GGG 0.511827 7_3:-44644175 None:intergenic
TTAGGTGGAGGCGTTGGTAA+CGG 0.512562 7_3:+44643679 Msa1105760:CDS
AGTTTAGTCCTATTTCACTT+AGG 0.513240 7_3:-44643597 None:intergenic
AACGGTGGTGTCAACGGTGG+TGG 0.514797 7_3:+44643697 Msa1105760:CDS
AGAAAGAAAGAAAGAAGAGA+GGG 0.518141 7_3:-44642714 None:intergenic
GATGGTTGAGGCTGTGGTGG+TGG 0.518267 7_3:-44643166 None:intergenic
GGATTGTTGTATCCATTTGA+AGG 0.522126 7_3:+44643820 Msa1105760:CDS
TGGAATGCTTCTGCTGGTGG+TGG 0.522977 7_3:+44644027 Msa1105760:CDS
AGCTTCTAAAGTTGACAAGA+AGG 0.532028 7_3:-44643785 None:intergenic
CGGTGCCCTTAGAAGTGTCC+CGG 0.534033 7_3:+44643399 Msa1105760:CDS
GTAGCAAAACTTTGTGTTGG+TGG 0.539364 7_3:-44643308 None:intergenic
GTAGTAGCAAAACTTTGTGT+TGG 0.542073 7_3:-44643311 None:intergenic
AAAGTACTAAACCATATATG+TGG 0.544412 7_3:-44644212 None:intergenic
AGCTCTTTAGGTGGAGGCGT+TGG 0.544707 7_3:+44643673 Msa1105760:CDS
GAGAGCTATCGGGGAATGGG+AGG 0.546285 7_3:+44642580 Msa1105760:five_prime_UTR
CTCGATCAGACCAGGTTCGA+TGG 0.546965 7_3:+44643219 Msa1105760:CDS
GCCATGAATCTCATCGGTGG+TGG 0.547604 7_3:-44643550 None:intergenic
CATGGAGGCTCGATCAGACC+AGG 0.549550 7_3:+44643211 Msa1105760:CDS
TGTCGAAGGTATTGGACAAA+GGG 0.551224 7_3:+44643376 Msa1105760:CDS
TTGTATCCATTTGAAGGTGG+TGG 0.552400 7_3:+44643826 Msa1105760:CDS
TGTGATGGTGTCAGGTTCGA+TGG 0.556968 7_3:-44643184 None:intergenic
ATCGGAAGCTCTTTAGGTGG+AGG 0.559518 7_3:+44643667 Msa1105760:CDS
ATTTACCTGTTGATGCCAGT+TGG 0.559637 7_3:-44642933 None:intergenic
CAACAACACCTCCAAGTCGC+CGG 0.561093 7_3:+44643465 Msa1105760:CDS
GTTGGTAACGGTGGTGTCAA+CGG 0.562708 7_3:+44643691 Msa1105760:CDS
CAATATTGGAATGCTTCTGC+TGG 0.566637 7_3:+44644021 Msa1105760:CDS
GCCCTTAGAAGTGTCCCGGT+TGG 0.569239 7_3:+44643403 Msa1105760:CDS
TTCGATGGTTGAGGCTGTGG+TGG 0.570012 7_3:-44643169 None:intergenic
GTTGGGGAACTGAGTACCGC+AGG 0.570283 7_3:-44643526 None:intergenic
CATATCGGAAGCTCTTTAGG+TGG 0.571600 7_3:+44643664 Msa1105760:CDS
TGTGGTGGTGGAATAAGTAG+AGG 0.574363 7_3:-44643154 None:intergenic
GATGGCAGATAGGGCAAGGA+TGG 0.575021 7_3:+44643237 Msa1105760:CDS
TAGACACACCACCATACGCA+TGG 0.575174 7_3:-44643876 None:intergenic
TCTCATCGGTGGTGGCGTTG+GGG 0.576658 7_3:-44643542 None:intergenic
TGTTTGCAGAGCTAGTTTGG+CGG 0.578980 7_3:-44643498 None:intergenic
AAGTCTCCAACACCTCCCAT+TGG 0.579899 7_3:-44643634 None:intergenic
TTAGAAGCTTCTTCTTCACA+TGG 0.581519 7_3:+44643799 Msa1105760:CDS
CTGACACCATCACAACCTCA+TGG 0.582703 7_3:+44643193 Msa1105760:CDS
TATTGGAATGCTTCTGCTGG+TGG 0.586587 7_3:+44644024 Msa1105760:CDS
TTCGACAACCACCTCCAACC+GGG 0.589154 7_3:-44643417 None:intergenic
GCTTCTAAAGTTGACAAGAA+GGG 0.589264 7_3:-44643784 None:intergenic
TTGTCGAAGGTATTGGACAA+AGG 0.589503 7_3:+44643375 Msa1105760:CDS
GTTTGGCGGTCTGAGCTAGC+CGG 0.595298 7_3:-44643484 None:intergenic
GCAGCAACAAAATCATCAAG+TGG 0.596192 7_3:+44643111 Msa1105760:intron
AAGATAGAATGAAAACCCTA+GGG 0.597350 7_3:+44644245 Msa1105760:three_prime_UTR
GTGGTTGTCGAAGAAACAAA+AGG 0.598438 7_3:+44643428 Msa1105760:CDS
TTTGAAGGTGGTGGTAGCGG+TGG 0.603652 7_3:+44643835 Msa1105760:CDS
AGGAGTGTTGACACTAGTGT+TGG 0.605835 7_3:-44643134 None:intergenic
AGAGCTATCGGGGAATGGGA+GGG 0.607461 7_3:+44642581 Msa1105760:five_prime_UTR
GGTGTCAGGTTCGATGGTTG+AGG 0.608734 7_3:-44643178 None:intergenic
TTGGCTGGATCCATATATGG+TGG 0.609224 7_3:-44642914 None:intergenic
GTTCGATGGCAGATAGGGCA+AGG 0.614474 7_3:+44643233 Msa1105760:CDS
GAGCCTCCATGAGGTTGTGA+TGG 0.618515 7_3:-44643199 None:intergenic
TCCAACCGGGACACTTCTAA+GGG 0.619326 7_3:-44643404 None:intergenic
GCAGCCACGCTACTTCTGCA+AGG 0.619737 7_3:+44643351 Msa1105760:CDS
TTGTTGTATCCATTTGAAGG+TGG 0.620036 7_3:+44643823 Msa1105760:CDS
TGATCACCTAGATGATGCAA+AGG 0.622493 7_3:-44643574 None:intergenic
TGGCTGGATCCATATATGGT+GGG 0.628650 7_3:-44642913 None:intergenic
GGTGGAGGCGTTGGTAACGG+TGG 0.630519 7_3:+44643682 Msa1105760:CDS
GAATCTAAGTAACATCCCTA+GGG 0.631813 7_3:-44644260 None:intergenic
AAAGGAGCCATGAATCTCAT+CGG 0.638198 7_3:-44643556 None:intergenic
ACTTCTGCAAGGCTTGTCGA+AGG 0.638852 7_3:+44643362 Msa1105760:CDS
GCTGTAGAAAGATCTGTCCA+AGG 0.641214 7_3:-44644063 None:intergenic
CGAAGGTATTGGACAAAGGG+CGG 0.642797 7_3:+44643379 Msa1105760:CDS
GTGGTGCTACTAATTCACCT+TGG 0.642878 7_3:+44644046 Msa1105760:CDS
AGACACACCACCATACGCAT+GGG 0.645170 7_3:-44643875 None:intergenic
CAAGCCTTGCAGAAGTAGCG+TGG 0.649251 7_3:-44643355 None:intergenic
AATGATCAATCCCATGCGTA+TGG 0.649437 7_3:+44643865 Msa1105760:CDS
CTCTCCAAGAGGAATAACCA+TGG 0.668874 7_3:+44642877 Msa1105760:exon
AAAAGATAAAGCTCTCCAAG+AGG 0.669297 7_3:+44642866 Msa1105760:five_prime_UTR
GATCAATCCCATGCGTATGG+TGG 0.672453 7_3:+44643868 Msa1105760:CDS
CTCTGCAAACAACTCTCCTG+CGG 0.677430 7_3:+44643510 Msa1105760:CDS
GTGTTGGTGGAATCACACCT+TGG 0.687306 7_3:-44643295 None:intergenic
GGTCTGATCGAGCCTCCATG+AGG 0.689453 7_3:-44643208 None:intergenic
GGAGCCATGAATCTCATCGG+TGG 0.692277 7_3:-44643553 None:intergenic
GGTAACGGTGGTGTCAACGG+TGG 0.699310 7_3:+44643694 Msa1105760:CDS
TGGGAGAGAAGTATAAACCA+TGG 0.714065 7_3:-44642894 None:intergenic
ACACCATCACAACCTCATGG+AGG 0.723504 7_3:+44643196 Msa1105760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGGAAATAAAAATTAA+TGG - chr7_3:44643090-44643109 None:intergenic 10.0%
!!! TAATTTTTCTTCTAATTATT+AGG + chr7_3:44644352-44644371 Msa1105760:three_prime_UTR 10.0%
!! AAAAAGGAAATAAAAATTAA+TGG - chr7_3:44643090-44643109 None:intergenic 10.0%
!!! TAATTTTTCTTCTAATTATT+AGG + chr7_3:44644352-44644371 Msa1105760:three_prime_UTR 10.0%
!! GATACATAAAATCAAATATT+TGG - chr7_3:44643063-44643082 None:intergenic 15.0%
!! GATACATAAAATCAAATATT+TGG - chr7_3:44643063-44643082 None:intergenic 15.0%
!! AAATAATTCTAGTGTGAAAA+TGG + chr7_3:44643909-44643928 Msa1105760:CDS 20.0%
!! TTCTTCTAATTATTAGGTTT+AGG + chr7_3:44644358-44644377 Msa1105760:three_prime_UTR 20.0%
!! AAATAATTCTAGTGTGAAAA+TGG + chr7_3:44643909-44643928 Msa1105760:CDS 20.0%
! TGATGAGAAGCTAAAAATAA+AGG - chr7_3:44642673-44642692 None:intergenic 25.0%
!! TAAAGGTTGAAAGGTTTTTA+GGG - chr7_3:44642845-44642864 None:intergenic 25.0%
!! TATCTTTTGTAAAGGTTGAA+AGG - chr7_3:44642854-44642873 None:intergenic 25.0%
! ATTTGGTATATTCAAGAGAA+GGG - chr7_3:44643046-44643065 None:intergenic 25.0%
! TATTTGGTATATTCAAGAGA+AGG - chr7_3:44643047-44643066 None:intergenic 25.0%
! AATCAATCTAGACAATTCTT+GGG + chr7_3:44643937-44643956 Msa1105760:CDS 25.0%
! ATCCTAATAGTGAACAATAT+TGG + chr7_3:44644007-44644026 Msa1105760:CDS 25.0%
! TTCCAATATTGTTCACTATT+AGG - chr7_3:44644012-44644031 None:intergenic 25.0%
! ATAAAGTTATGTCCTATAGT+TGG - chr7_3:44644118-44644137 None:intergenic 25.0%
!! TCTTGAGATTGATAATAGTA+GGG - chr7_3:44644178-44644197 None:intergenic 25.0%
!! AAAGTACTAAACCATATATG+TGG - chr7_3:44644215-44644234 None:intergenic 25.0%
!!! TTCTTATTTTTCCACTTTTG+AGG + chr7_3:44644280-44644299 Msa1105760:three_prime_UTR 25.0%
! AAAGATTAAAACCTCAAAAG+TGG - chr7_3:44644294-44644313 None:intergenic 25.0%
! TGATGAGAAGCTAAAAATAA+AGG - chr7_3:44642673-44642692 None:intergenic 25.0%
!! TAAAGGTTGAAAGGTTTTTA+GGG - chr7_3:44642845-44642864 None:intergenic 25.0%
!! TATCTTTTGTAAAGGTTGAA+AGG - chr7_3:44642854-44642873 None:intergenic 25.0%
! ATTTGGTATATTCAAGAGAA+GGG - chr7_3:44643046-44643065 None:intergenic 25.0%
! TATTTGGTATATTCAAGAGA+AGG - chr7_3:44643047-44643066 None:intergenic 25.0%
! AATCAATCTAGACAATTCTT+GGG + chr7_3:44643937-44643956 Msa1105760:CDS 25.0%
! ATCCTAATAGTGAACAATAT+TGG + chr7_3:44644007-44644026 Msa1105760:CDS 25.0%
! TTCCAATATTGTTCACTATT+AGG - chr7_3:44644012-44644031 None:intergenic 25.0%
! ATAAAGTTATGTCCTATAGT+TGG - chr7_3:44644118-44644137 None:intergenic 25.0%
!! TCTTGAGATTGATAATAGTA+GGG - chr7_3:44644178-44644197 None:intergenic 25.0%
!! AAAGTACTAAACCATATATG+TGG - chr7_3:44644215-44644234 None:intergenic 25.0%
!!! TTCTTATTTTTCCACTTTTG+AGG + chr7_3:44644280-44644299 Msa1105760:three_prime_UTR 25.0%
! AAAGATTAAAACCTCAAAAG+TGG - chr7_3:44644294-44644313 None:intergenic 25.0%
AAAACAAAAAGAGAGCTATC+GGG + chr7_3:44642570-44642589 Msa1105760:five_prime_UTR 30.0%
AGAAAGAAAGAAAGAAGAGA+GGG - chr7_3:44642717-44642736 None:intergenic 30.0%
AAGAAAGAAAGAAAGAAGAG+AGG - chr7_3:44642718-44642737 None:intergenic 30.0%
! GTAAAGGTTGAAAGGTTTTT+AGG - chr7_3:44642846-44642865 None:intergenic 30.0%
!! GAGAGCTTTATCTTTTGTAA+AGG - chr7_3:44642862-44642881 None:intergenic 30.0%
ATCAACAGGTAAATCAACAA+GGG + chr7_3:44642942-44642961 Msa1105760:intron 30.0%
! TGATTTTGTTGCTGCAAAAA+AGG - chr7_3:44643106-44643125 None:intergenic 30.0%
AGTTTAGTCCTATTTCACTT+AGG - chr7_3:44643600-44643619 None:intergenic 30.0%
AGTGAAATAGGACTAAACTA+TGG + chr7_3:44643601-44643620 Msa1105760:CDS 30.0%
! TATGGTTTTTCTACTCCAAT+GGG + chr7_3:44643619-44643638 Msa1105760:CDS 30.0%
GGAGACTTAAATTTCCATAT+CGG + chr7_3:44643649-44643668 Msa1105760:CDS 30.0%
GAATCAATCTAGACAATTCT+TGG + chr7_3:44643936-44643955 Msa1105760:CDS 30.0%
CTACTACAAATTCCAACTAT+AGG + chr7_3:44644103-44644122 Msa1105760:CDS 30.0%
! GTCTTGAGATTGATAATAGT+AGG - chr7_3:44644179-44644198 None:intergenic 30.0%
! AGTTTGAAACTCCACATATA+TGG + chr7_3:44644201-44644220 Msa1105760:three_prime_UTR 30.0%
TAAGATAGAATGAAAACCCT+AGG + chr7_3:44644244-44644263 Msa1105760:three_prime_UTR 30.0%
AAGATAGAATGAAAACCCTA+GGG + chr7_3:44644245-44644264 Msa1105760:three_prime_UTR 30.0%
AAAACAAAAAGAGAGCTATC+GGG + chr7_3:44642570-44642589 Msa1105760:five_prime_UTR 30.0%
AGAAAGAAAGAAAGAAGAGA+GGG - chr7_3:44642717-44642736 None:intergenic 30.0%
AAGAAAGAAAGAAAGAAGAG+AGG - chr7_3:44642718-44642737 None:intergenic 30.0%
! GTAAAGGTTGAAAGGTTTTT+AGG - chr7_3:44642846-44642865 None:intergenic 30.0%
!! GAGAGCTTTATCTTTTGTAA+AGG - chr7_3:44642862-44642881 None:intergenic 30.0%
ATCAACAGGTAAATCAACAA+GGG + chr7_3:44642942-44642961 Msa1105760:intron 30.0%
! TGATTTTGTTGCTGCAAAAA+AGG - chr7_3:44643106-44643125 None:intergenic 30.0%
AGTTTAGTCCTATTTCACTT+AGG - chr7_3:44643600-44643619 None:intergenic 30.0%
AGTGAAATAGGACTAAACTA+TGG + chr7_3:44643601-44643620 Msa1105760:CDS 30.0%
! TATGGTTTTTCTACTCCAAT+GGG + chr7_3:44643619-44643638 Msa1105760:CDS 30.0%
GGAGACTTAAATTTCCATAT+CGG + chr7_3:44643649-44643668 Msa1105760:CDS 30.0%
GAATCAATCTAGACAATTCT+TGG + chr7_3:44643936-44643955 Msa1105760:CDS 30.0%
CTACTACAAATTCCAACTAT+AGG + chr7_3:44644103-44644122 Msa1105760:CDS 30.0%
! GTCTTGAGATTGATAATAGT+AGG - chr7_3:44644179-44644198 None:intergenic 30.0%
! AGTTTGAAACTCCACATATA+TGG + chr7_3:44644201-44644220 Msa1105760:three_prime_UTR 30.0%
TAAGATAGAATGAAAACCCT+AGG + chr7_3:44644244-44644263 Msa1105760:three_prime_UTR 30.0%
AAGATAGAATGAAAACCCTA+GGG + chr7_3:44644245-44644264 Msa1105760:three_prime_UTR 30.0%
AAACAAAAAGAGAGCTATCG+GGG + chr7_3:44642571-44642590 Msa1105760:five_prime_UTR 35.0%
!!! GATTGTGTGTGTTTTGTTTG+TGG - chr7_3:44642782-44642801 None:intergenic 35.0%
AAAAGATAAAGCTCTCCAAG+AGG + chr7_3:44642866-44642885 Msa1105760:five_prime_UTR 35.0%
TAAACCATGGTTATTCCTCT+TGG - chr7_3:44642884-44642903 None:intergenic 35.0%
CATCAACAGGTAAATCAACA+AGG + chr7_3:44642941-44642960 Msa1105760:intron 35.0%
TCAACAAGGGTTCTTCAATT+AGG + chr7_3:44642955-44642974 Msa1105760:intron 35.0%
! TTTTGTGATGGTTCTTGCAT+AGG - chr7_3:44643271-44643290 None:intergenic 35.0%
AACCATCACAAAAATGTCCA+AGG + chr7_3:44643278-44643297 Msa1105760:CDS 35.0%
GTAGTAGCAAAACTTTGTGT+TGG - chr7_3:44643314-44643333 None:intergenic 35.0%
! CTATGGTTTTTCTACTCCAA+TGG + chr7_3:44643618-44643637 Msa1105760:CDS 35.0%
! TCTACTTCGATTTTACCAGT+TGG + chr7_3:44643721-44643740 Msa1105760:CDS 35.0%
AAGGGAAATTGATGAGTTTG+TGG - chr7_3:44643769-44643788 None:intergenic 35.0%
!! GCTTCTAAAGTTGACAAGAA+GGG - chr7_3:44643787-44643806 None:intergenic 35.0%
!! AGCTTCTAAAGTTGACAAGA+AGG - chr7_3:44643788-44643807 None:intergenic 35.0%
TTAGAAGCTTCTTCTTCACA+TGG + chr7_3:44643799-44643818 Msa1105760:CDS 35.0%
GGATTGTTGTATCCATTTGA+AGG + chr7_3:44643820-44643839 Msa1105760:CDS 35.0%
TTGTTGTATCCATTTGAAGG+TGG + chr7_3:44643823-44643842 Msa1105760:CDS 35.0%
GAATCTAAGTAACATCCCTA+GGG - chr7_3:44644263-44644282 None:intergenic 35.0%
AGAATCTAAGTAACATCCCT+AGG - chr7_3:44644264-44644283 None:intergenic 35.0%
AAACAAAAAGAGAGCTATCG+GGG + chr7_3:44642571-44642590 Msa1105760:five_prime_UTR 35.0%
!!! GATTGTGTGTGTTTTGTTTG+TGG - chr7_3:44642782-44642801 None:intergenic 35.0%
AAAAGATAAAGCTCTCCAAG+AGG + chr7_3:44642866-44642885 Msa1105760:five_prime_UTR 35.0%
TAAACCATGGTTATTCCTCT+TGG - chr7_3:44642884-44642903 None:intergenic 35.0%
CATCAACAGGTAAATCAACA+AGG + chr7_3:44642941-44642960 Msa1105760:intron 35.0%
TCAACAAGGGTTCTTCAATT+AGG + chr7_3:44642955-44642974 Msa1105760:intron 35.0%
! TTTTGTGATGGTTCTTGCAT+AGG - chr7_3:44643271-44643290 None:intergenic 35.0%
AACCATCACAAAAATGTCCA+AGG + chr7_3:44643278-44643297 Msa1105760:CDS 35.0%
GTAGTAGCAAAACTTTGTGT+TGG - chr7_3:44643314-44643333 None:intergenic 35.0%
! CTATGGTTTTTCTACTCCAA+TGG + chr7_3:44643618-44643637 Msa1105760:CDS 35.0%
! TCTACTTCGATTTTACCAGT+TGG + chr7_3:44643721-44643740 Msa1105760:CDS 35.0%
AAGGGAAATTGATGAGTTTG+TGG - chr7_3:44643769-44643788 None:intergenic 35.0%
!! GCTTCTAAAGTTGACAAGAA+GGG - chr7_3:44643787-44643806 None:intergenic 35.0%
!! AGCTTCTAAAGTTGACAAGA+AGG - chr7_3:44643788-44643807 None:intergenic 35.0%
TTAGAAGCTTCTTCTTCACA+TGG + chr7_3:44643799-44643818 Msa1105760:CDS 35.0%
GGATTGTTGTATCCATTTGA+AGG + chr7_3:44643820-44643839 Msa1105760:CDS 35.0%
TTGTTGTATCCATTTGAAGG+TGG + chr7_3:44643823-44643842 Msa1105760:CDS 35.0%
GAATCTAAGTAACATCCCTA+GGG - chr7_3:44644263-44644282 None:intergenic 35.0%
AGAATCTAAGTAACATCCCT+AGG - chr7_3:44644264-44644283 None:intergenic 35.0%
GAAAGAAGAGAGGGATCAAA+GGG - chr7_3:44642708-44642727 None:intergenic 40.0%
AGAAAGAAGAGAGGGATCAA+AGG - chr7_3:44642709-44642728 None:intergenic 40.0%
! TGGGAGAGAAGTATAAACCA+TGG - chr7_3:44642897-44642916 None:intergenic 40.0%
TACTTCTCTCCCACCATATA+TGG + chr7_3:44642904-44642923 Msa1105760:CDS 40.0%
ATTTACCTGTTGATGCCAGT+TGG - chr7_3:44642936-44642955 None:intergenic 40.0%
GCAGCAACAAAATCATCAAG+TGG + chr7_3:44643111-44643130 Msa1105760:intron 40.0%
! CACCTTGGACATTTTTGTGA+TGG - chr7_3:44643283-44643302 None:intergenic 40.0%
GTAGCAAAACTTTGTGTTGG+TGG - chr7_3:44643311-44643330 None:intergenic 40.0%
!! TTGTCGAAGGTATTGGACAA+AGG + chr7_3:44643375-44643394 Msa1105760:CDS 40.0%
!! TGTCGAAGGTATTGGACAAA+GGG + chr7_3:44643376-44643395 Msa1105760:CDS 40.0%
GTGGTTGTCGAAGAAACAAA+AGG + chr7_3:44643428-44643447 Msa1105760:CDS 40.0%
AGTTGTTTGCAGAGCTAGTT+TGG - chr7_3:44643504-44643523 None:intergenic 40.0%
AAAGGAGCCATGAATCTCAT+CGG - chr7_3:44643559-44643578 None:intergenic 40.0%
TGATCACCTAGATGATGCAA+AGG - chr7_3:44643577-44643596 None:intergenic 40.0%
GGTGATCACCTAAGTGAAAT+AGG + chr7_3:44643589-44643608 Msa1105760:CDS 40.0%
TTCCATATCGGAAGCTCTTT+AGG + chr7_3:44643661-44643680 Msa1105760:CDS 40.0%
CATTGCTCAAAATTGCCAAC+TGG - chr7_3:44643739-44643758 None:intergenic 40.0%
! CAGTTGGCAATTTTGAGCAA+TGG + chr7_3:44643737-44643756 Msa1105760:CDS 40.0%
! TTGGCAATTTTGAGCAATGG+AGG + chr7_3:44643740-44643759 Msa1105760:CDS 40.0%
TTGTATCCATTTGAAGGTGG+TGG + chr7_3:44643826-44643845 Msa1105760:CDS 40.0%
AATGATCAATCCCATGCGTA+TGG + chr7_3:44643865-44643884 Msa1105760:CDS 40.0%
CAATATTGGAATGCTTCTGC+TGG + chr7_3:44644021-44644040 Msa1105760:CDS 40.0%
GAAAGAAGAGAGGGATCAAA+GGG - chr7_3:44642708-44642727 None:intergenic 40.0%
AGAAAGAAGAGAGGGATCAA+AGG - chr7_3:44642709-44642728 None:intergenic 40.0%
! TGGGAGAGAAGTATAAACCA+TGG - chr7_3:44642897-44642916 None:intergenic 40.0%
TACTTCTCTCCCACCATATA+TGG + chr7_3:44642904-44642923 Msa1105760:CDS 40.0%
ATTTACCTGTTGATGCCAGT+TGG - chr7_3:44642936-44642955 None:intergenic 40.0%
GCAGCAACAAAATCATCAAG+TGG + chr7_3:44643111-44643130 Msa1105760:intron 40.0%
! CACCTTGGACATTTTTGTGA+TGG - chr7_3:44643283-44643302 None:intergenic 40.0%
GTAGCAAAACTTTGTGTTGG+TGG - chr7_3:44643311-44643330 None:intergenic 40.0%
!! TTGTCGAAGGTATTGGACAA+AGG + chr7_3:44643375-44643394 Msa1105760:CDS 40.0%
!! TGTCGAAGGTATTGGACAAA+GGG + chr7_3:44643376-44643395 Msa1105760:CDS 40.0%
GTGGTTGTCGAAGAAACAAA+AGG + chr7_3:44643428-44643447 Msa1105760:CDS 40.0%
AGTTGTTTGCAGAGCTAGTT+TGG - chr7_3:44643504-44643523 None:intergenic 40.0%
AAAGGAGCCATGAATCTCAT+CGG - chr7_3:44643559-44643578 None:intergenic 40.0%
TGATCACCTAGATGATGCAA+AGG - chr7_3:44643577-44643596 None:intergenic 40.0%
GGTGATCACCTAAGTGAAAT+AGG + chr7_3:44643589-44643608 Msa1105760:CDS 40.0%
TTCCATATCGGAAGCTCTTT+AGG + chr7_3:44643661-44643680 Msa1105760:CDS 40.0%
CATTGCTCAAAATTGCCAAC+TGG - chr7_3:44643739-44643758 None:intergenic 40.0%
! CAGTTGGCAATTTTGAGCAA+TGG + chr7_3:44643737-44643756 Msa1105760:CDS 40.0%
! TTGGCAATTTTGAGCAATGG+AGG + chr7_3:44643740-44643759 Msa1105760:CDS 40.0%
TTGTATCCATTTGAAGGTGG+TGG + chr7_3:44643826-44643845 Msa1105760:CDS 40.0%
AATGATCAATCCCATGCGTA+TGG + chr7_3:44643865-44643884 Msa1105760:CDS 40.0%
CAATATTGGAATGCTTCTGC+TGG + chr7_3:44644021-44644040 Msa1105760:CDS 40.0%
AAAAGAGAGCTATCGGGGAA+TGG + chr7_3:44642576-44642595 Msa1105760:five_prime_UTR 45.0%
AAAGAGAGCTATCGGGGAAT+GGG + chr7_3:44642577-44642596 Msa1105760:five_prime_UTR 45.0%
AGAGAGGGATCAAAGGGTTA+AGG - chr7_3:44642702-44642721 None:intergenic 45.0%
CTCTCCAAGAGGAATAACCA+TGG + chr7_3:44642877-44642896 Msa1105760:exon 45.0%
TGGCTGGATCCATATATGGT+GGG - chr7_3:44642916-44642935 None:intergenic 45.0%
TTGGCTGGATCCATATATGG+TGG - chr7_3:44642917-44642936 None:intergenic 45.0%
CAGTTGGCTGGATCCATATA+TGG - chr7_3:44642920-44642939 None:intergenic 45.0%
CATATATGGATCCAGCCAAC+TGG + chr7_3:44642918-44642937 Msa1105760:CDS 45.0%
!! AGGAGTGTTGACACTAGTGT+TGG - chr7_3:44643137-44643156 None:intergenic 45.0%
!! TGTGGTGGTGGAATAAGTAG+AGG - chr7_3:44643157-44643176 None:intergenic 45.0%
! TGTTTGCAGAGCTAGTTTGG+CGG - chr7_3:44643501-44643520 None:intergenic 45.0%
ATGGCTCCTTTGCATCATCT+AGG + chr7_3:44643568-44643587 Msa1105760:CDS 45.0%
! GGTTTTTCTACTCCAATGGG+AGG + chr7_3:44643622-44643641 Msa1105760:CDS 45.0%
CACCTAAAGAGCTTCCGATA+TGG - chr7_3:44643666-44643685 None:intergenic 45.0%
CATATCGGAAGCTCTTTAGG+TGG + chr7_3:44643664-44643683 Msa1105760:CDS 45.0%
TATTGGAATGCTTCTGCTGG+TGG + chr7_3:44644024-44644043 Msa1105760:CDS 45.0%
!! GTGGTGCTACTAATTCACCT+TGG + chr7_3:44644046-44644065 Msa1105760:CDS 45.0%
GCTGTAGAAAGATCTGTCCA+AGG - chr7_3:44644066-44644085 None:intergenic 45.0%
AAAAGAGAGCTATCGGGGAA+TGG + chr7_3:44642576-44642595 Msa1105760:five_prime_UTR 45.0%
AAAGAGAGCTATCGGGGAAT+GGG + chr7_3:44642577-44642596 Msa1105760:five_prime_UTR 45.0%
AGAGAGGGATCAAAGGGTTA+AGG - chr7_3:44642702-44642721 None:intergenic 45.0%
CTCTCCAAGAGGAATAACCA+TGG + chr7_3:44642877-44642896 Msa1105760:exon 45.0%
TGGCTGGATCCATATATGGT+GGG - chr7_3:44642916-44642935 None:intergenic 45.0%
TTGGCTGGATCCATATATGG+TGG - chr7_3:44642917-44642936 None:intergenic 45.0%
CAGTTGGCTGGATCCATATA+TGG - chr7_3:44642920-44642939 None:intergenic 45.0%
CATATATGGATCCAGCCAAC+TGG + chr7_3:44642918-44642937 Msa1105760:CDS 45.0%
!! AGGAGTGTTGACACTAGTGT+TGG - chr7_3:44643137-44643156 None:intergenic 45.0%
!! TGTGGTGGTGGAATAAGTAG+AGG - chr7_3:44643157-44643176 None:intergenic 45.0%
! TGTTTGCAGAGCTAGTTTGG+CGG - chr7_3:44643501-44643520 None:intergenic 45.0%
ATGGCTCCTTTGCATCATCT+AGG + chr7_3:44643568-44643587 Msa1105760:CDS 45.0%
! GGTTTTTCTACTCCAATGGG+AGG + chr7_3:44643622-44643641 Msa1105760:CDS 45.0%
CACCTAAAGAGCTTCCGATA+TGG - chr7_3:44643666-44643685 None:intergenic 45.0%
CATATCGGAAGCTCTTTAGG+TGG + chr7_3:44643664-44643683 Msa1105760:CDS 45.0%
TATTGGAATGCTTCTGCTGG+TGG + chr7_3:44644024-44644043 Msa1105760:CDS 45.0%
!! GTGGTGCTACTAATTCACCT+TGG + chr7_3:44644046-44644065 Msa1105760:CDS 45.0%
GCTGTAGAAAGATCTGTCCA+AGG - chr7_3:44644066-44644085 None:intergenic 45.0%
!! AAAAATTAAACTAAAAAAAA+AGG - chr7_3:44644340-44644359 None:intergenic 5.0%
!! AAAAATTAAACTAAAAAAAA+AGG - chr7_3:44644340-44644359 None:intergenic 5.0%
GGATCAAAGGGTTAAGGAGG+TGG - chr7_3:44642696-44642715 None:intergenic 50.0%
GAGGGATCAAAGGGTTAAGG+AGG - chr7_3:44642699-44642718 None:intergenic 50.0%
! TGTGATGGTGTCAGGTTCGA+TGG - chr7_3:44643187-44643206 None:intergenic 50.0%
! CATGAGGTTGTGATGGTGTC+AGG - chr7_3:44643195-44643214 None:intergenic 50.0%
CTGACACCATCACAACCTCA+TGG + chr7_3:44643193-44643212 Msa1105760:CDS 50.0%
ACACCATCACAACCTCATGG+AGG + chr7_3:44643196-44643215 Msa1105760:CDS 50.0%
ACCAGGTTCGATGGCAGATA+GGG + chr7_3:44643228-44643247 Msa1105760:CDS 50.0%
! GTGTTGGTGGAATCACACCT+TGG - chr7_3:44643298-44643317 None:intergenic 50.0%
ACTTCTGCAAGGCTTGTCGA+AGG + chr7_3:44643362-44643381 Msa1105760:CDS 50.0%
! GCAAGGCTTGTCGAAGGTAT+TGG + chr7_3:44643368-44643387 Msa1105760:CDS 50.0%
!! CGAAGGTATTGGACAAAGGG+CGG + chr7_3:44643379-44643398 Msa1105760:CDS 50.0%
TCCAACCGGGACACTTCTAA+GGG - chr7_3:44643407-44643426 None:intergenic 50.0%
CTCTGCAAACAACTCTCCTG+CGG + chr7_3:44643510-44643529 Msa1105760:CDS 50.0%
! TCTACTCCAATGGGAGGTGT+TGG + chr7_3:44643628-44643647 Msa1105760:CDS 50.0%
AAGTCTCCAACACCTCCCAT+TGG - chr7_3:44643637-44643656 None:intergenic 50.0%
ATCGGAAGCTCTTTAGGTGG+AGG + chr7_3:44643667-44643686 Msa1105760:CDS 50.0%
!! TTAGGTGGAGGCGTTGGTAA+CGG + chr7_3:44643679-44643698 Msa1105760:CDS 50.0%
!! GTTGGTAACGGTGGTGTCAA+CGG + chr7_3:44643691-44643710 Msa1105760:CDS 50.0%
! CCATTTGAAGGTGGTGGTAG+CGG + chr7_3:44643832-44643851 Msa1105760:CDS 50.0%
GATCAATCCCATGCGTATGG+TGG + chr7_3:44643868-44643887 Msa1105760:CDS 50.0%
AGACACACCACCATACGCAT+GGG - chr7_3:44643878-44643897 None:intergenic 50.0%
TAGACACACCACCATACGCA+TGG - chr7_3:44643879-44643898 None:intergenic 50.0%
! TGCGTATGGTGGTGTGTCTA+AGG + chr7_3:44643879-44643898 Msa1105760:CDS 50.0%
GGATCAAAGGGTTAAGGAGG+TGG - chr7_3:44642696-44642715 None:intergenic 50.0%
GAGGGATCAAAGGGTTAAGG+AGG - chr7_3:44642699-44642718 None:intergenic 50.0%
! TGTGATGGTGTCAGGTTCGA+TGG - chr7_3:44643187-44643206 None:intergenic 50.0%
! CATGAGGTTGTGATGGTGTC+AGG - chr7_3:44643195-44643214 None:intergenic 50.0%
CTGACACCATCACAACCTCA+TGG + chr7_3:44643193-44643212 Msa1105760:CDS 50.0%
ACACCATCACAACCTCATGG+AGG + chr7_3:44643196-44643215 Msa1105760:CDS 50.0%
ACCAGGTTCGATGGCAGATA+GGG + chr7_3:44643228-44643247 Msa1105760:CDS 50.0%
! GTGTTGGTGGAATCACACCT+TGG - chr7_3:44643298-44643317 None:intergenic 50.0%
ACTTCTGCAAGGCTTGTCGA+AGG + chr7_3:44643362-44643381 Msa1105760:CDS 50.0%
! GCAAGGCTTGTCGAAGGTAT+TGG + chr7_3:44643368-44643387 Msa1105760:CDS 50.0%
!! CGAAGGTATTGGACAAAGGG+CGG + chr7_3:44643379-44643398 Msa1105760:CDS 50.0%
TCCAACCGGGACACTTCTAA+GGG - chr7_3:44643407-44643426 None:intergenic 50.0%
CTCTGCAAACAACTCTCCTG+CGG + chr7_3:44643510-44643529 Msa1105760:CDS 50.0%
! TCTACTCCAATGGGAGGTGT+TGG + chr7_3:44643628-44643647 Msa1105760:CDS 50.0%
AAGTCTCCAACACCTCCCAT+TGG - chr7_3:44643637-44643656 None:intergenic 50.0%
ATCGGAAGCTCTTTAGGTGG+AGG + chr7_3:44643667-44643686 Msa1105760:CDS 50.0%
!! TTAGGTGGAGGCGTTGGTAA+CGG + chr7_3:44643679-44643698 Msa1105760:CDS 50.0%
!! GTTGGTAACGGTGGTGTCAA+CGG + chr7_3:44643691-44643710 Msa1105760:CDS 50.0%
! CCATTTGAAGGTGGTGGTAG+CGG + chr7_3:44643832-44643851 Msa1105760:CDS 50.0%
GATCAATCCCATGCGTATGG+TGG + chr7_3:44643868-44643887 Msa1105760:CDS 50.0%
AGACACACCACCATACGCAT+GGG - chr7_3:44643878-44643897 None:intergenic 50.0%
TAGACACACCACCATACGCA+TGG - chr7_3:44643879-44643898 None:intergenic 50.0%
! TGCGTATGGTGGTGTGTCTA+AGG + chr7_3:44643879-44643898 Msa1105760:CDS 50.0%
AGAGCTATCGGGGAATGGGA+GGG + chr7_3:44642581-44642600 Msa1105760:five_prime_UTR 55.0%
TCCAGCCAACTGGCATCAAC+AGG + chr7_3:44642928-44642947 Msa1105760:CDS 55.0%
ACCTGTTGATGCCAGTTGGC+TGG - chr7_3:44642932-44642951 None:intergenic 55.0%
TTCGATGGTTGAGGCTGTGG+TGG - chr7_3:44643172-44643191 None:intergenic 55.0%
AGGTTCGATGGTTGAGGCTG+TGG - chr7_3:44643175-44643194 None:intergenic 55.0%
GGTGTCAGGTTCGATGGTTG+AGG - chr7_3:44643181-44643200 None:intergenic 55.0%
GAGCCTCCATGAGGTTGTGA+TGG - chr7_3:44643202-44643221 None:intergenic 55.0%
CTCGATCAGACCAGGTTCGA+TGG + chr7_3:44643219-44643238 Msa1105760:CDS 55.0%
GACCAGGTTCGATGGCAGAT+AGG + chr7_3:44643227-44643246 Msa1105760:CDS 55.0%
GTTCGATGGCAGATAGGGCA+AGG + chr7_3:44643233-44643252 Msa1105760:CDS 55.0%
GATGGCAGATAGGGCAAGGA+TGG + chr7_3:44643237-44643256 Msa1105760:CDS 55.0%
CAAGCCTTGCAGAAGTAGCG+TGG - chr7_3:44643358-44643377 None:intergenic 55.0%
CTCCAACCGGGACACTTCTA+AGG - chr7_3:44643408-44643427 None:intergenic 55.0%
!! CTTAGAAGTGTCCCGGTTGG+AGG + chr7_3:44643406-44643425 Msa1105760:CDS 55.0%
TTCGACAACCACCTCCAACC+GGG - chr7_3:44643420-44643439 None:intergenic 55.0%
CTTCGACAACCACCTCCAAC+CGG - chr7_3:44643421-44643440 None:intergenic 55.0%
CAACAACACCTCCAAGTCGC+CGG + chr7_3:44643465-44643484 Msa1105760:CDS 55.0%
! ATCTCATCGGTGGTGGCGTT+GGG - chr7_3:44643546-44643565 None:intergenic 55.0%
! AATCTCATCGGTGGTGGCGT+TGG - chr7_3:44643547-44643566 None:intergenic 55.0%
GCCACCACCGATGAGATTCA+TGG + chr7_3:44643549-44643568 Msa1105760:CDS 55.0%
GCCATGAATCTCATCGGTGG+TGG - chr7_3:44643553-44643572 None:intergenic 55.0%
GGAGCCATGAATCTCATCGG+TGG - chr7_3:44643556-44643575 None:intergenic 55.0%
! AGCTCTTTAGGTGGAGGCGT+TGG + chr7_3:44643673-44643692 Msa1105760:CDS 55.0%
CCGCTACCACCACCTTCAAA+TGG - chr7_3:44643835-44643854 None:intergenic 55.0%
!! TTTGAAGGTGGTGGTAGCGG+TGG + chr7_3:44643835-44643854 Msa1105760:CDS 55.0%
TGGAATGCTTCTGCTGGTGG+TGG + chr7_3:44644027-44644046 Msa1105760:CDS 55.0%
AGAGCTATCGGGGAATGGGA+GGG + chr7_3:44642581-44642600 Msa1105760:five_prime_UTR 55.0%
TCCAGCCAACTGGCATCAAC+AGG + chr7_3:44642928-44642947 Msa1105760:CDS 55.0%
ACCTGTTGATGCCAGTTGGC+TGG - chr7_3:44642932-44642951 None:intergenic 55.0%
TTCGATGGTTGAGGCTGTGG+TGG - chr7_3:44643172-44643191 None:intergenic 55.0%
AGGTTCGATGGTTGAGGCTG+TGG - chr7_3:44643175-44643194 None:intergenic 55.0%
GGTGTCAGGTTCGATGGTTG+AGG - chr7_3:44643181-44643200 None:intergenic 55.0%
GAGCCTCCATGAGGTTGTGA+TGG - chr7_3:44643202-44643221 None:intergenic 55.0%
CTCGATCAGACCAGGTTCGA+TGG + chr7_3:44643219-44643238 Msa1105760:CDS 55.0%
GACCAGGTTCGATGGCAGAT+AGG + chr7_3:44643227-44643246 Msa1105760:CDS 55.0%
GTTCGATGGCAGATAGGGCA+AGG + chr7_3:44643233-44643252 Msa1105760:CDS 55.0%
GATGGCAGATAGGGCAAGGA+TGG + chr7_3:44643237-44643256 Msa1105760:CDS 55.0%
CAAGCCTTGCAGAAGTAGCG+TGG - chr7_3:44643358-44643377 None:intergenic 55.0%
CTCCAACCGGGACACTTCTA+AGG - chr7_3:44643408-44643427 None:intergenic 55.0%
!! CTTAGAAGTGTCCCGGTTGG+AGG + chr7_3:44643406-44643425 Msa1105760:CDS 55.0%
TTCGACAACCACCTCCAACC+GGG - chr7_3:44643420-44643439 None:intergenic 55.0%
CTTCGACAACCACCTCCAAC+CGG - chr7_3:44643421-44643440 None:intergenic 55.0%
CAACAACACCTCCAAGTCGC+CGG + chr7_3:44643465-44643484 Msa1105760:CDS 55.0%
! ATCTCATCGGTGGTGGCGTT+GGG - chr7_3:44643546-44643565 None:intergenic 55.0%
! AATCTCATCGGTGGTGGCGT+TGG - chr7_3:44643547-44643566 None:intergenic 55.0%
GCCACCACCGATGAGATTCA+TGG + chr7_3:44643549-44643568 Msa1105760:CDS 55.0%
GCCATGAATCTCATCGGTGG+TGG - chr7_3:44643553-44643572 None:intergenic 55.0%
GGAGCCATGAATCTCATCGG+TGG - chr7_3:44643556-44643575 None:intergenic 55.0%
! AGCTCTTTAGGTGGAGGCGT+TGG + chr7_3:44643673-44643692 Msa1105760:CDS 55.0%
CCGCTACCACCACCTTCAAA+TGG - chr7_3:44643835-44643854 None:intergenic 55.0%
!! TTTGAAGGTGGTGGTAGCGG+TGG + chr7_3:44643835-44643854 Msa1105760:CDS 55.0%
TGGAATGCTTCTGCTGGTGG+TGG + chr7_3:44644027-44644046 Msa1105760:CDS 55.0%
GAGAGCTATCGGGGAATGGG+AGG + chr7_3:44642580-44642599 Msa1105760:five_prime_UTR 60.0%
GATGGTTGAGGCTGTGGTGG+TGG - chr7_3:44643169-44643188 None:intergenic 60.0%
GGTCTGATCGAGCCTCCATG+AGG - chr7_3:44643211-44643230 None:intergenic 60.0%
CATGGAGGCTCGATCAGACC+AGG + chr7_3:44643211-44643230 Msa1105760:CDS 60.0%
GCCCTATCTGCCATCGAACC+TGG - chr7_3:44643232-44643251 None:intergenic 60.0%
GCAGCCACGCTACTTCTGCA+AGG + chr7_3:44643351-44643370 Msa1105760:CDS 60.0%
!! CGGTGCCCTTAGAAGTGTCC+CGG + chr7_3:44643399-44643418 Msa1105760:CDS 60.0%
!! GCCCTTAGAAGTGTCCCGGT+TGG + chr7_3:44643403-44643422 Msa1105760:CDS 60.0%
!! AGAAGTGTCCCGGTTGGAGG+TGG + chr7_3:44643409-44643428 Msa1105760:CDS 60.0%
GTTTGGCGGTCTGAGCTAGC+CGG - chr7_3:44643487-44643506 None:intergenic 60.0%
! GTTGGGGAACTGAGTACCGC+AGG - chr7_3:44643529-44643548 None:intergenic 60.0%
! TCTCATCGGTGGTGGCGTTG+GGG - chr7_3:44643545-44643564 None:intergenic 60.0%
! GGTAACGGTGGTGTCAACGG+TGG + chr7_3:44643694-44643713 Msa1105760:CDS 60.0%
! AACGGTGGTGTCAACGGTGG+TGG + chr7_3:44643697-44643716 Msa1105760:CDS 60.0%
GAGAGCTATCGGGGAATGGG+AGG + chr7_3:44642580-44642599 Msa1105760:five_prime_UTR 60.0%
GATGGTTGAGGCTGTGGTGG+TGG - chr7_3:44643169-44643188 None:intergenic 60.0%
GGTCTGATCGAGCCTCCATG+AGG - chr7_3:44643211-44643230 None:intergenic 60.0%
CATGGAGGCTCGATCAGACC+AGG + chr7_3:44643211-44643230 Msa1105760:CDS 60.0%
GCCCTATCTGCCATCGAACC+TGG - chr7_3:44643232-44643251 None:intergenic 60.0%
GCAGCCACGCTACTTCTGCA+AGG + chr7_3:44643351-44643370 Msa1105760:CDS 60.0%
!! CGGTGCCCTTAGAAGTGTCC+CGG + chr7_3:44643399-44643418 Msa1105760:CDS 60.0%
!! GCCCTTAGAAGTGTCCCGGT+TGG + chr7_3:44643403-44643422 Msa1105760:CDS 60.0%
!! AGAAGTGTCCCGGTTGGAGG+TGG + chr7_3:44643409-44643428 Msa1105760:CDS 60.0%
GTTTGGCGGTCTGAGCTAGC+CGG - chr7_3:44643487-44643506 None:intergenic 60.0%
! GTTGGGGAACTGAGTACCGC+AGG - chr7_3:44643529-44643548 None:intergenic 60.0%
! TCTCATCGGTGGTGGCGTTG+GGG - chr7_3:44643545-44643564 None:intergenic 60.0%
! GGTAACGGTGGTGTCAACGG+TGG + chr7_3:44643694-44643713 Msa1105760:CDS 60.0%
! AACGGTGGTGTCAACGGTGG+TGG + chr7_3:44643697-44643716 Msa1105760:CDS 60.0%
! TGAGCTAGCCGGCGACTTGG+AGG - chr7_3:44643476-44643495 None:intergenic 65.0%
GTCTGAGCTAGCCGGCGACT+TGG - chr7_3:44643479-44643498 None:intergenic 65.0%
!! GGTGGAGGCGTTGGTAACGG+TGG + chr7_3:44643682-44643701 Msa1105760:CDS 65.0%
!! GAAGGTGGTGGTAGCGGTGG+TGG + chr7_3:44643838-44643857 Msa1105760:CDS 65.0%
! TGAGCTAGCCGGCGACTTGG+AGG - chr7_3:44643476-44643495 None:intergenic 65.0%
GTCTGAGCTAGCCGGCGACT+TGG - chr7_3:44643479-44643498 None:intergenic 65.0%
!! GGTGGAGGCGTTGGTAACGG+TGG + chr7_3:44643682-44643701 Msa1105760:CDS 65.0%
!! GAAGGTGGTGGTAGCGGTGG+TGG + chr7_3:44643838-44643857 Msa1105760:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 44642570 44644380 44642570 ID=Msa1105760;Name=Msa1105760
chr7_3 mRNA 44642570 44644380 44642570 ID=Msa1105760-mRNA-1;Parent=Msa1105760;Name=Msa1105760-mRNA-1;_AED=0.00;_eAED=0.00;_QI=326|1|1|1|1|1|2|249|356
chr7_3 exon 44642570 44642949 44642570 ID=Msa1105760-mRNA-1:exon:9186;Parent=Msa1105760-mRNA-1
chr7_3 exon 44643115 44644380 44643115 ID=Msa1105760-mRNA-1:exon:9187;Parent=Msa1105760-mRNA-1
chr7_3 five_prime_UTR 44642570 44642895 44642570 ID=Msa1105760-mRNA-1:five_prime_utr;Parent=Msa1105760-mRNA-1
chr7_3 CDS 44642896 44642949 44642896 ID=Msa1105760-mRNA-1:cds;Parent=Msa1105760-mRNA-1
chr7_3 CDS 44643115 44644131 44643115 ID=Msa1105760-mRNA-1:cds;Parent=Msa1105760-mRNA-1
chr7_3 three_prime_UTR 44644132 44644380 44644132 ID=Msa1105760-mRNA-1:three_prime_utr;Parent=Msa1105760-mRNA-1
Gene Sequence

>Msa1105760

ATGGTTTATACTTCTCTCCCACCATATATGGATCCAGCCAACTGGCATCAACAGCAACAAAATCATCAAGTGGCCAACACTAGTGTCAACACTCCTCTACTTATTCCACCACCACAGCCTCAACCATCGAACCTGACACCATCACAACCTCATGGAGGCTCGATCAGACCAGGTTCGATGGCAGATAGGGCAAGGATGGCAAACATACCTATGCAAGAACCATCACAAAAATGTCCAAGGTGTGATTCCACCAACACAAAGTTTTGCTACTACAACAACTATAGTCTCTCGCAGCCACGCTACTTCTGCAAGGCTTGTCGAAGGTATTGGACAAAGGGCGGTGCCCTTAGAAGTGTCCCGGTTGGAGGTGGTTGTCGAAGAAACAAAAGGTCTAAATCAAGCAGCAACAACACCTCCAAGTCGCCGGCTAGCTCAGACCGCCAAACTAGCTCTGCAAACAACTCTCCTGCGGTACTCAGTTCCCCAACGCCACCACCGATGAGATTCATGGCTCCTTTGCATCATCTAGGTGATCACCTAAGTGAAATAGGACTAAACTATGGTTTTTCTACTCCAATGGGAGGTGTTGGAGACTTAAATTTCCATATCGGAAGCTCTTTAGGTGGAGGCGTTGGTAACGGTGGTGTCAACGGTGGTGGTTCTACTTCGATTTTACCAGTTGGCAATTTTGAGCAATGGAGGATGCCACAAACTCATCAATTTCCCTTCTTGTCAACTTTAGAAGCTTCTTCTTCACATGGATTGTTGTATCCATTTGAAGGTGGTGGTAGCGGTGGTGGTGCTAATGATCAATCCCATGCGTATGGTGGTGTGTCTAAGGTATTATCAAATAATTCTAGTGTGAAAATGGAAGAGAATCAATCTAGACAATTCTTGGGAATGATCAACAAAAACAACATCAATAATAATAATAATAATAATAATAATCCTAATAGTGAACAATATTGGAATGCTTCTGCTGGTGGTGGTGCTACTAATTCACCTTGGACAGATCTTTCTACAGCTTATAACACTTCTTCAGCTACTACAAATTCCAACTATAGGACATAA
Protein sequence

>Msa1105760

MVYTSLPPYMDPANWHQQQQNHQVANTSVNTPLLIPPPQPQPSNLTPSQPHGGSIRPGSMADRARMANIPMQEPSQKCPRCDSTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGALRSVPVGGGCRRNKRSKSSSNNTSKSPASSDRQTSSANNSPAVLSSPTPPPMRFMAPLHHLGDHLSEIGLNYGFSTPMGGVGDLNFHIGSSLGGGVGNGGVNGGGSTSILPVGNFEQWRMPQTHQFPFLSTLEASSSHGLLYPFEGGGSGGGANDQSHAYGGVSKVLSNNSSVKMEENQSRQFLGMINKNNINNNNNNNNNPNSEQYWNASAGGGATNSPWTDLSTAYNTSSATTNSNYRT*