Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106130 | XP_003623058.1 | 92.718 | 206 | 13 | 2 | 30 | 233 | 1 | 206 | 7.82e-127 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106130 | sp|Q9SIB4|WOX3_ARATH | 85.135 | 74 | 11 | 0 | 30 | 103 | 1 | 74 | 7.82e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106130 | G7L3H0 | 92.718 | 206 | 13 | 2 | 30 | 233 | 1 | 206 | 3.73e-127 | 367 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1106130 | TF | HB-WOX |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106130 | MtrunA17_Chr7g0238431 | 92.718 | 206 | 13 | 2 | 30 | 233 | 1 | 206 | 7.19e-131 | 367 |
| Msa1106130 | MtrunA17_Chr4g0043891 | 71.429 | 70 | 20 | 0 | 30 | 99 | 1 | 70 | 8.56e-30 | 111 |
| Msa1106130 | MtrunA17_Chr1g0153171 | 71.642 | 67 | 19 | 0 | 33 | 99 | 86 | 152 | 7.50e-29 | 108 |
| Msa1106130 | MtrunA17_Chr8g0392991 | 74.627 | 67 | 17 | 0 | 35 | 101 | 94 | 160 | 1.28e-28 | 110 |
| Msa1106130 | MtrunA17_Chr5g0436661 | 58.140 | 86 | 34 | 1 | 16 | 99 | 10 | 95 | 5.54e-28 | 105 |
| Msa1106130 | MtrunA17_Chr4g0031341 | 65.625 | 64 | 22 | 0 | 37 | 100 | 25 | 88 | 1.37e-24 | 97.8 |
| Msa1106130 | MtrunA17_Chr5g0405351 | 67.692 | 65 | 20 | 1 | 35 | 98 | 28 | 92 | 5.42e-24 | 97.4 |
| Msa1106130 | MtrunA17_Chr8g0385441 | 74.074 | 54 | 14 | 0 | 48 | 101 | 93 | 146 | 1.02e-21 | 88.2 |
| Msa1106130 | MtrunA17_Chr3g0125111 | 72.222 | 54 | 15 | 0 | 48 | 101 | 91 | 144 | 3.63e-21 | 86.7 |
| Msa1106130 | MtrunA17_Chr2g0283141 | 45.588 | 68 | 37 | 0 | 31 | 98 | 49 | 116 | 2.09e-14 | 71.6 |
| Msa1106130 | MtrunA17_Chr7g0223471 | 39.286 | 84 | 51 | 0 | 31 | 114 | 41 | 124 | 3.83e-14 | 70.9 |
| Msa1106130 | MtrunA17_Chr1g0212511 | 34.259 | 108 | 61 | 3 | 1 | 98 | 39 | 146 | 1.60e-13 | 68.2 |
| Msa1106130 | MtrunA17_Chr7g0222981 | 32.381 | 105 | 67 | 1 | 8 | 108 | 35 | 139 | 1.09e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1106130 | AT2G28610.1 | 85.135 | 74 | 11 | 0 | 30 | 103 | 1 | 74 | 7.95e-41 | 140 |
| Msa1106130 | AT3G18010.1 | 73.134 | 67 | 18 | 0 | 35 | 101 | 74 | 140 | 3.55e-28 | 109 |
| Msa1106130 | AT1G46480.2 | 59.494 | 79 | 32 | 0 | 21 | 99 | 74 | 152 | 1.57e-27 | 104 |
| Msa1106130 | AT3G11260.1 | 70.769 | 65 | 18 | 1 | 37 | 101 | 24 | 87 | 3.03e-27 | 103 |
| Msa1106130 | AT1G46480.1 | 59.494 | 79 | 32 | 0 | 21 | 99 | 74 | 152 | 8.37e-27 | 103 |
| Msa1106130 | AT5G59340.1 | 69.697 | 66 | 20 | 0 | 35 | 100 | 12 | 77 | 4.03e-26 | 102 |
| Msa1106130 | AT5G05770.1 | 64.062 | 64 | 23 | 0 | 36 | 99 | 28 | 91 | 5.82e-26 | 98.2 |
| Msa1106130 | AT2G17950.1 | 67.692 | 65 | 20 | 1 | 35 | 98 | 36 | 100 | 1.53e-23 | 96.3 |
| Msa1106130 | AT2G01500.1 | 58.228 | 79 | 33 | 0 | 13 | 91 | 37 | 115 | 2.64e-23 | 95.1 |
| Msa1106130 | AT5G45980.1 | 38.043 | 92 | 56 | 1 | 32 | 123 | 50 | 140 | 1.49e-14 | 72.0 |
| Msa1106130 | AT2G33880.1 | 45.588 | 68 | 37 | 0 | 31 | 98 | 49 | 116 | 3.74e-14 | 71.2 |
| Msa1106130 | AT2G33880.2 | 45.588 | 68 | 37 | 0 | 31 | 98 | 49 | 116 | 4.21e-14 | 71.2 |
| Msa1106130 | AT1G20700.2 | 48.333 | 60 | 31 | 0 | 37 | 96 | 33 | 92 | 3.22e-13 | 65.5 |
| Msa1106130 | AT1G20700.3 | 48.333 | 60 | 31 | 0 | 37 | 96 | 95 | 154 | 7.80e-13 | 65.5 |
| Msa1106130 | AT1G20700.1 | 48.333 | 60 | 31 | 0 | 37 | 96 | 95 | 154 | 9.31e-13 | 65.5 |
| Msa1106130 | AT4G35550.1 | 38.462 | 91 | 51 | 1 | 11 | 96 | 68 | 158 | 1.42e-12 | 65.9 |
Find 38 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTATTGATTTGGAAATT+AGG | 0.246463 | 7_3:-45327516 | None:intergenic |
| ACTACTCACCTTTCTTTCTA+TGG | 0.291926 | 7_3:+45327649 | Msa1106130:CDS |
| TCTTTCTATGGTAGGATAGA+AGG | 0.296957 | 7_3:+45327661 | Msa1106130:CDS |
| GACATTGCATTCAACAACTA+TGG | 0.308834 | 7_3:+45328526 | Msa1106130:CDS |
| TTATAATAATCAACAAAGTT+TGG | 0.344120 | 7_3:+45328492 | Msa1106130:CDS |
| CAAAAGTACTACCAACAAAA+TGG | 0.345039 | 7_3:-45327846 | None:intergenic |
| AGGTGGAGACATTATTGATT+TGG | 0.348398 | 7_3:-45327524 | None:intergenic |
| TGAACAACTTATGATCTTAG+AGG | 0.352994 | 7_3:+45327573 | Msa1106130:CDS |
| TGAAAGTGATGTATAAATAG+AGG | 0.358609 | 7_3:-45327467 | None:intergenic |
| ATCATAAGTTGTTCAGTTGT+AGG | 0.386722 | 7_3:-45327565 | None:intergenic |
| TGCAACATGAAGGTGCTTCA+TGG | 0.419089 | 7_3:-45328573 | None:intergenic |
| TCTTGTGCATTAGATCCAAA+AGG | 0.476916 | 7_3:-45327874 | None:intergenic |
| CTATCCTACCATAGAAAGAA+AGG | 0.481976 | 7_3:-45327657 | None:intergenic |
| TCATAAGTTGTTCAGTTGTA+GGG | 0.482629 | 7_3:-45327564 | None:intergenic |
| CTCCACCTGGTTCATCAAGA+TGG | 0.487034 | 7_3:+45327539 | Msa1106130:CDS |
| AAGGGGCAAGCAATTGCAAA+TGG | 0.487355 | 7_3:+45328464 | Msa1106130:CDS |
| TTGCATTCAACAACTATGGT+TGG | 0.492556 | 7_3:+45328530 | Msa1106130:CDS |
| GGGATAGACAGAAGTTAAGA+AGG | 0.493019 | 7_3:+45327722 | Msa1106130:CDS |
| CTATTGGTTTCAGAATCATA+AGG | 0.495866 | 7_3:+45327696 | Msa1106130:CDS |
| CAACTATGGTTGGACACTCA+TGG | 0.499731 | 7_3:+45328540 | Msa1106130:CDS |
| GGTTTCAGAATCATAAGGCT+AGG | 0.507758 | 7_3:+45327701 | Msa1106130:CDS |
| TTTGTGATGACAAGAAGAGA+GGG | 0.512575 | 7_3:-45327491 | None:intergenic |
| TTGATTCTTGTTGTTGAGAG+AGG | 0.515346 | 7_3:-45328625 | None:intergenic |
| TAATAATCAACAAAGTTTGG+TGG | 0.528741 | 7_3:+45328495 | Msa1106130:CDS |
| CTCACCTTTCTTTCTATGGT+AGG | 0.541469 | 7_3:+45327653 | Msa1106130:CDS |
| TGCTGAATTTGAACAGCACT+AGG | 0.547085 | 7_3:-45327622 | None:intergenic |
| CTTGTGCATTAGATCCAAAA+GGG | 0.549702 | 7_3:-45327873 | None:intergenic |
| GTTTCAGAATCATAAGGCTA+GGG | 0.551754 | 7_3:+45327702 | Msa1106130:CDS |
| GTAGCTGCAAACACATCAGA+AGG | 0.562740 | 7_3:+45328445 | Msa1106130:CDS |
| AGAGGTTTAGTGCAACATGA+AGG | 0.572055 | 7_3:-45328583 | None:intergenic |
| TTAGAGGAACTGTATAGAAG+TGG | 0.579089 | 7_3:+45327589 | Msa1106130:CDS |
| GAAAGTGATGTATAAATAGA+GGG | 0.585041 | 7_3:-45327466 | None:intergenic |
| AAAAGATCAAGAGTCTTGAG+AGG | 0.601753 | 7_3:-45328601 | None:intergenic |
| GGGCTCCATCTTGATGAACC+AGG | 0.608838 | 7_3:-45327544 | None:intergenic |
| TAGCTGCAAACACATCAGAA+GGG | 0.621365 | 7_3:+45328446 | Msa1106130:CDS |
| AGCTGCAAACACATCAGAAG+GGG | 0.625629 | 7_3:+45328447 | Msa1106130:CDS |
| AAATCAATAATGTCTCCACC+TGG | 0.671020 | 7_3:+45327526 | Msa1106130:CDS |
| CTCCATCTTGATGAACCAGG+TGG | 0.692416 | 7_3:-45327541 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAATTAATACATATATA+GGG | + | chr7_3:45328325-45328344 | Msa1106130:intron | 10.0% |
| !! | ATTCAATTAATACATATATA+GGG | + | chr7_3:45328325-45328344 | Msa1106130:intron | 10.0% |
| !!! | AATTTTTTTGACTTAAATCA+TGG | + | chr7_3:45328053-45328072 | Msa1106130:intron | 15.0% |
| !! | CATTCAATTAATACATATAT+AGG | + | chr7_3:45328324-45328343 | Msa1106130:intron | 15.0% |
| !! | TTATAATAATCAACAAAGTT+TGG | + | chr7_3:45328492-45328511 | Msa1106130:CDS | 15.0% |
| !!! | AATTTTTTTGACTTAAATCA+TGG | + | chr7_3:45328053-45328072 | Msa1106130:intron | 15.0% |
| !! | CATTCAATTAATACATATAT+AGG | + | chr7_3:45328324-45328343 | Msa1106130:intron | 15.0% |
| !! | TTATAATAATCAACAAAGTT+TGG | + | chr7_3:45328492-45328511 | Msa1106130:CDS | 15.0% |
| !!! | ACATTATTGATTTGGAAATT+AGG | - | chr7_3:45327519-45327538 | None:intergenic | 20.0% |
| !! | AGAAAAAGAAGAAGAAAAAT+AGG | - | chr7_3:45327994-45328013 | None:intergenic | 20.0% |
| !! | TAATTCTTCTTTATAACTCT+TGG | + | chr7_3:45328023-45328042 | Msa1106130:intron | 20.0% |
| !!! | ATACCTCAAAATCTTTTATA+TGG | - | chr7_3:45328114-45328133 | None:intergenic | 20.0% |
| !! | TATTATATTGTCGAAAATTG+CGG | - | chr7_3:45328160-45328179 | None:intergenic | 20.0% |
| !! | AAAGATGATAATTTAAGTCA+TGG | - | chr7_3:45328221-45328240 | None:intergenic | 20.0% |
| !! | ATGACTTAAATTATCATCTT+TGG | + | chr7_3:45328220-45328239 | Msa1106130:intron | 20.0% |
| !!! | ACATTATTGATTTGGAAATT+AGG | - | chr7_3:45327519-45327538 | None:intergenic | 20.0% |
| !! | AGAAAAAGAAGAAGAAAAAT+AGG | - | chr7_3:45327994-45328013 | None:intergenic | 20.0% |
| !! | TAATTCTTCTTTATAACTCT+TGG | + | chr7_3:45328023-45328042 | Msa1106130:intron | 20.0% |
| !!! | ATACCTCAAAATCTTTTATA+TGG | - | chr7_3:45328114-45328133 | None:intergenic | 20.0% |
| !! | TATTATATTGTCGAAAATTG+CGG | - | chr7_3:45328160-45328179 | None:intergenic | 20.0% |
| !! | AAAGATGATAATTTAAGTCA+TGG | - | chr7_3:45328221-45328240 | None:intergenic | 20.0% |
| !! | ATGACTTAAATTATCATCTT+TGG | + | chr7_3:45328220-45328239 | Msa1106130:intron | 20.0% |
| ! | GAAAGTGATGTATAAATAGA+GGG | - | chr7_3:45327469-45327488 | None:intergenic | 25.0% |
| ! | TGAAAGTGATGTATAAATAG+AGG | - | chr7_3:45327470-45327489 | None:intergenic | 25.0% |
| !! | AAGGCAAAAATGTTTTCTAT+TGG | + | chr7_3:45327680-45327699 | Msa1106130:CDS | 25.0% |
| ! | GAAGAAAAATAGGACAAAAA+AGG | - | chr7_3:45327984-45328003 | None:intergenic | 25.0% |
| !! | ATGCCATATAAAAGATTTTG+AGG | + | chr7_3:45328108-45328127 | Msa1106130:intron | 25.0% |
| ! | TAAATTATCATCTTTGGTTG+TGG | + | chr7_3:45328226-45328245 | Msa1106130:intron | 25.0% |
| ! | TCTACTTTCTTCATTTGATA+TGG | + | chr7_3:45328410-45328429 | Msa1106130:intron | 25.0% |
| ! | TCTTCATTTGATATGGATTT+AGG | + | chr7_3:45328417-45328436 | Msa1106130:intron | 25.0% |
| ! | CTTCATTTGATATGGATTTA+GGG | + | chr7_3:45328418-45328437 | Msa1106130:intron | 25.0% |
| ! | TAATAATCAACAAAGTTTGG+TGG | + | chr7_3:45328495-45328514 | Msa1106130:CDS | 25.0% |
| ! | GAAAGTGATGTATAAATAGA+GGG | - | chr7_3:45327469-45327488 | None:intergenic | 25.0% |
| ! | TGAAAGTGATGTATAAATAG+AGG | - | chr7_3:45327470-45327489 | None:intergenic | 25.0% |
| !! | AAGGCAAAAATGTTTTCTAT+TGG | + | chr7_3:45327680-45327699 | Msa1106130:CDS | 25.0% |
| ! | GAAGAAAAATAGGACAAAAA+AGG | - | chr7_3:45327984-45328003 | None:intergenic | 25.0% |
| !! | ATGCCATATAAAAGATTTTG+AGG | + | chr7_3:45328108-45328127 | Msa1106130:intron | 25.0% |
| ! | TAAATTATCATCTTTGGTTG+TGG | + | chr7_3:45328226-45328245 | Msa1106130:intron | 25.0% |
| ! | TCTACTTTCTTCATTTGATA+TGG | + | chr7_3:45328410-45328429 | Msa1106130:intron | 25.0% |
| ! | TCTTCATTTGATATGGATTT+AGG | + | chr7_3:45328417-45328436 | Msa1106130:intron | 25.0% |
| ! | CTTCATTTGATATGGATTTA+GGG | + | chr7_3:45328418-45328437 | Msa1106130:intron | 25.0% |
| ! | TAATAATCAACAAAGTTTGG+TGG | + | chr7_3:45328495-45328514 | Msa1106130:CDS | 25.0% |
| TCATAAGTTGTTCAGTTGTA+GGG | - | chr7_3:45327567-45327586 | None:intergenic | 30.0% | |
| ATCATAAGTTGTTCAGTTGT+AGG | - | chr7_3:45327568-45327587 | None:intergenic | 30.0% | |
| TGAACAACTTATGATCTTAG+AGG | + | chr7_3:45327573-45327592 | Msa1106130:CDS | 30.0% | |
| !! | CTATTGGTTTCAGAATCATA+AGG | + | chr7_3:45327696-45327715 | Msa1106130:CDS | 30.0% |
| ! | ATGATCAGTAACCATTTTGT+TGG | + | chr7_3:45327835-45327854 | Msa1106130:CDS | 30.0% |
| !! | CAAAAGTACTACCAACAAAA+TGG | - | chr7_3:45327849-45327868 | None:intergenic | 30.0% |
| !!! | CATTTTGTTGGTAGTACTTT+TGG | + | chr7_3:45327847-45327866 | Msa1106130:CDS | 30.0% |
| AAAGCTAGGTGAGTTAAAAA+AGG | - | chr7_3:45327905-45327924 | None:intergenic | 30.0% | |
| ATTACCTCAAAAAGAAAGCT+AGG | - | chr7_3:45327919-45327938 | None:intergenic | 30.0% | |
| TGAATGCAAACAATTTCACT+TGG | + | chr7_3:45328278-45328297 | Msa1106130:intron | 30.0% | |
| ! | AATCCAATCCTTTTGTGTAA+TGG | - | chr7_3:45328304-45328323 | None:intergenic | 30.0% |
| TCATAAGTTGTTCAGTTGTA+GGG | - | chr7_3:45327567-45327586 | None:intergenic | 30.0% | |
| ATCATAAGTTGTTCAGTTGT+AGG | - | chr7_3:45327568-45327587 | None:intergenic | 30.0% | |
| TGAACAACTTATGATCTTAG+AGG | + | chr7_3:45327573-45327592 | Msa1106130:CDS | 30.0% | |
| !! | CTATTGGTTTCAGAATCATA+AGG | + | chr7_3:45327696-45327715 | Msa1106130:CDS | 30.0% |
| ! | ATGATCAGTAACCATTTTGT+TGG | + | chr7_3:45327835-45327854 | Msa1106130:CDS | 30.0% |
| !! | CAAAAGTACTACCAACAAAA+TGG | - | chr7_3:45327849-45327868 | None:intergenic | 30.0% |
| !!! | CATTTTGTTGGTAGTACTTT+TGG | + | chr7_3:45327847-45327866 | Msa1106130:CDS | 30.0% |
| AAAGCTAGGTGAGTTAAAAA+AGG | - | chr7_3:45327905-45327924 | None:intergenic | 30.0% | |
| ATTACCTCAAAAAGAAAGCT+AGG | - | chr7_3:45327919-45327938 | None:intergenic | 30.0% | |
| TGAATGCAAACAATTTCACT+TGG | + | chr7_3:45328278-45328297 | Msa1106130:intron | 30.0% | |
| ! | AATCCAATCCTTTTGTGTAA+TGG | - | chr7_3:45328304-45328323 | None:intergenic | 30.0% |
| TTTGTGATGACAAGAAGAGA+GGG | - | chr7_3:45327494-45327513 | None:intergenic | 35.0% | |
| ! | TTTTGTGATGACAAGAAGAG+AGG | - | chr7_3:45327495-45327514 | None:intergenic | 35.0% |
| ! | AGGTGGAGACATTATTGATT+TGG | - | chr7_3:45327527-45327546 | None:intergenic | 35.0% |
| AAATCAATAATGTCTCCACC+TGG | + | chr7_3:45327526-45327545 | Msa1106130:CDS | 35.0% | |
| TTAGAGGAACTGTATAGAAG+TGG | + | chr7_3:45327589-45327608 | Msa1106130:CDS | 35.0% | |
| ACTACTCACCTTTCTTTCTA+TGG | + | chr7_3:45327649-45327668 | Msa1106130:CDS | 35.0% | |
| CTATCCTACCATAGAAAGAA+AGG | - | chr7_3:45327660-45327679 | None:intergenic | 35.0% | |
| TCTTTCTATGGTAGGATAGA+AGG | + | chr7_3:45327661-45327680 | Msa1106130:CDS | 35.0% | |
| GTTTCAGAATCATAAGGCTA+GGG | + | chr7_3:45327702-45327721 | Msa1106130:CDS | 35.0% | |
| !! | AGTACTTTTGGTTACCCTTT+TGG | + | chr7_3:45327859-45327878 | Msa1106130:CDS | 35.0% |
| CTTGTGCATTAGATCCAAAA+GGG | - | chr7_3:45327876-45327895 | None:intergenic | 35.0% | |
| TCTTGTGCATTAGATCCAAA+AGG | - | chr7_3:45327877-45327896 | None:intergenic | 35.0% | |
| GCAGTCTGTAACTTCAATTA+CGG | + | chr7_3:45328085-45328104 | Msa1106130:intron | 35.0% | |
| GAAAATTGCGGTCAAAATTG+CGG | - | chr7_3:45328148-45328167 | None:intergenic | 35.0% | |
| GACATTGCATTCAACAACTA+TGG | + | chr7_3:45328526-45328545 | Msa1106130:CDS | 35.0% | |
| TTGCATTCAACAACTATGGT+TGG | + | chr7_3:45328530-45328549 | Msa1106130:CDS | 35.0% | |
| AAAAGATCAAGAGTCTTGAG+AGG | - | chr7_3:45328604-45328623 | None:intergenic | 35.0% | |
| !! | TTGATTCTTGTTGTTGAGAG+AGG | - | chr7_3:45328628-45328647 | None:intergenic | 35.0% |
| TTTGTGATGACAAGAAGAGA+GGG | - | chr7_3:45327494-45327513 | None:intergenic | 35.0% | |
| ! | TTTTGTGATGACAAGAAGAG+AGG | - | chr7_3:45327495-45327514 | None:intergenic | 35.0% |
| ! | AGGTGGAGACATTATTGATT+TGG | - | chr7_3:45327527-45327546 | None:intergenic | 35.0% |
| AAATCAATAATGTCTCCACC+TGG | + | chr7_3:45327526-45327545 | Msa1106130:CDS | 35.0% | |
| TTAGAGGAACTGTATAGAAG+TGG | + | chr7_3:45327589-45327608 | Msa1106130:CDS | 35.0% | |
| ACTACTCACCTTTCTTTCTA+TGG | + | chr7_3:45327649-45327668 | Msa1106130:CDS | 35.0% | |
| CTATCCTACCATAGAAAGAA+AGG | - | chr7_3:45327660-45327679 | None:intergenic | 35.0% | |
| TCTTTCTATGGTAGGATAGA+AGG | + | chr7_3:45327661-45327680 | Msa1106130:CDS | 35.0% | |
| GTTTCAGAATCATAAGGCTA+GGG | + | chr7_3:45327702-45327721 | Msa1106130:CDS | 35.0% | |
| !! | AGTACTTTTGGTTACCCTTT+TGG | + | chr7_3:45327859-45327878 | Msa1106130:CDS | 35.0% |
| CTTGTGCATTAGATCCAAAA+GGG | - | chr7_3:45327876-45327895 | None:intergenic | 35.0% | |
| TCTTGTGCATTAGATCCAAA+AGG | - | chr7_3:45327877-45327896 | None:intergenic | 35.0% | |
| GCAGTCTGTAACTTCAATTA+CGG | + | chr7_3:45328085-45328104 | Msa1106130:intron | 35.0% | |
| GAAAATTGCGGTCAAAATTG+CGG | - | chr7_3:45328148-45328167 | None:intergenic | 35.0% | |
| GACATTGCATTCAACAACTA+TGG | + | chr7_3:45328526-45328545 | Msa1106130:CDS | 35.0% | |
| TTGCATTCAACAACTATGGT+TGG | + | chr7_3:45328530-45328549 | Msa1106130:CDS | 35.0% | |
| AAAAGATCAAGAGTCTTGAG+AGG | - | chr7_3:45328604-45328623 | None:intergenic | 35.0% | |
| !! | TTGATTCTTGTTGTTGAGAG+AGG | - | chr7_3:45328628-45328647 | None:intergenic | 35.0% |
| TGCTGAATTTGAACAGCACT+AGG | - | chr7_3:45327625-45327644 | None:intergenic | 40.0% | |
| CTCACCTTTCTTTCTATGGT+AGG | + | chr7_3:45327653-45327672 | Msa1106130:CDS | 40.0% | |
| GGTTTCAGAATCATAAGGCT+AGG | + | chr7_3:45327701-45327720 | Msa1106130:CDS | 40.0% | |
| GGGATAGACAGAAGTTAAGA+AGG | + | chr7_3:45327722-45327741 | Msa1106130:CDS | 40.0% | |
| !! | CTCACCTAGCTTTCTTTTTG+AGG | + | chr7_3:45327912-45327931 | Msa1106130:CDS | 40.0% |
| TCACTTGGCCATTACACAAA+AGG | + | chr7_3:45328293-45328312 | Msa1106130:intron | 40.0% | |
| TGGCCATTACACAAAAGGAT+TGG | + | chr7_3:45328298-45328317 | Msa1106130:intron | 40.0% | |
| TAGCTGCAAACACATCAGAA+GGG | + | chr7_3:45328446-45328465 | Msa1106130:CDS | 40.0% | |
| AGAGGTTTAGTGCAACATGA+AGG | - | chr7_3:45328586-45328605 | None:intergenic | 40.0% | |
| TGCTGAATTTGAACAGCACT+AGG | - | chr7_3:45327625-45327644 | None:intergenic | 40.0% | |
| CTCACCTTTCTTTCTATGGT+AGG | + | chr7_3:45327653-45327672 | Msa1106130:CDS | 40.0% | |
| GGTTTCAGAATCATAAGGCT+AGG | + | chr7_3:45327701-45327720 | Msa1106130:CDS | 40.0% | |
| GGGATAGACAGAAGTTAAGA+AGG | + | chr7_3:45327722-45327741 | Msa1106130:CDS | 40.0% | |
| !! | CTCACCTAGCTTTCTTTTTG+AGG | + | chr7_3:45327912-45327931 | Msa1106130:CDS | 40.0% |
| TCACTTGGCCATTACACAAA+AGG | + | chr7_3:45328293-45328312 | Msa1106130:intron | 40.0% | |
| TGGCCATTACACAAAAGGAT+TGG | + | chr7_3:45328298-45328317 | Msa1106130:intron | 40.0% | |
| TAGCTGCAAACACATCAGAA+GGG | + | chr7_3:45328446-45328465 | Msa1106130:CDS | 40.0% | |
| AGAGGTTTAGTGCAACATGA+AGG | - | chr7_3:45328586-45328605 | None:intergenic | 40.0% | |
| GTAGCTGCAAACACATCAGA+AGG | + | chr7_3:45328445-45328464 | Msa1106130:CDS | 45.0% | |
| AGCTGCAAACACATCAGAAG+GGG | + | chr7_3:45328447-45328466 | Msa1106130:CDS | 45.0% | |
| AAGGGGCAAGCAATTGCAAA+TGG | + | chr7_3:45328464-45328483 | Msa1106130:CDS | 45.0% | |
| CAACTATGGTTGGACACTCA+TGG | + | chr7_3:45328540-45328559 | Msa1106130:CDS | 45.0% | |
| !! | TGCAACATGAAGGTGCTTCA+TGG | - | chr7_3:45328576-45328595 | None:intergenic | 45.0% |
| GTAGCTGCAAACACATCAGA+AGG | + | chr7_3:45328445-45328464 | Msa1106130:CDS | 45.0% | |
| AGCTGCAAACACATCAGAAG+GGG | + | chr7_3:45328447-45328466 | Msa1106130:CDS | 45.0% | |
| AAGGGGCAAGCAATTGCAAA+TGG | + | chr7_3:45328464-45328483 | Msa1106130:CDS | 45.0% | |
| CAACTATGGTTGGACACTCA+TGG | + | chr7_3:45328540-45328559 | Msa1106130:CDS | 45.0% | |
| !! | TGCAACATGAAGGTGCTTCA+TGG | - | chr7_3:45328576-45328595 | None:intergenic | 45.0% |
| CTCCACCTGGTTCATCAAGA+TGG | + | chr7_3:45327539-45327558 | Msa1106130:CDS | 50.0% | |
| CTCCATCTTGATGAACCAGG+TGG | - | chr7_3:45327544-45327563 | None:intergenic | 50.0% | |
| CTCCACCTGGTTCATCAAGA+TGG | + | chr7_3:45327539-45327558 | Msa1106130:CDS | 50.0% | |
| CTCCATCTTGATGAACCAGG+TGG | - | chr7_3:45327544-45327563 | None:intergenic | 50.0% | |
| GGGCTCCATCTTGATGAACC+AGG | - | chr7_3:45327547-45327566 | None:intergenic | 55.0% | |
| GGGCTCCATCTTGATGAACC+AGG | - | chr7_3:45327547-45327566 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 45327448 | 45328654 | 45327448 | ID=Msa1106130;Name=Msa1106130 |
| chr7_3 | mRNA | 45327448 | 45328654 | 45327448 | ID=Msa1106130-mRNA-1;Parent=Msa1106130;Name=Msa1106130-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|1|2|0|233 |
| chr7_3 | exon | 45327448 | 45327933 | 45327448 | ID=Msa1106130-mRNA-1:exon:9315;Parent=Msa1106130-mRNA-1 |
| chr7_3 | exon | 45328439 | 45328654 | 45328439 | ID=Msa1106130-mRNA-1:exon:9316;Parent=Msa1106130-mRNA-1 |
| chr7_3 | CDS | 45327448 | 45327933 | 45327448 | ID=Msa1106130-mRNA-1:cds;Parent=Msa1106130-mRNA-1 |
| chr7_3 | CDS | 45328439 | 45328654 | 45328439 | ID=Msa1106130-mRNA-1:cds;Parent=Msa1106130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
