AlfalfaGEDB | Msa1108030

M. sativa cultivar zhongmu-4 / Msa1108030

KEGG: K04730
GO: -
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1108030	AES79453.1	78.107	169	8	1	1	140	832	1000	4.83e-80	265

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1108030	sp\|Q9SD62\|Y3471_ARATH	44.156	154	72	3	1	142	868	1019	9.93e-32	122

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1108030	G7KRB1	78.107	169	8	1	1	140	832	1000	2.31e-80	265

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1108030	MtrunA17_Chr7g0241921	78.107	169	8	1	1	140	832	1000	4.44e-84	265
Msa1108030	MtrunA17_Chr2g0314001	46.711	152	67	4	1	138	852	1003	3.26e-31	117
Msa1108030	MtrunA17_Chr2g0314031	46.853	143	71	2	1	138	848	990	3.84e-31	117
Msa1108030	MtrunA17_Chr5g0436941	41.290	155	78	2	1	142	846	1000	4.52e-31	116
Msa1108030	MtrunA17_Chr2g0314021	45.395	152	69	4	1	138	852	1003	4.20e-30	114
Msa1108030	MtrunA17_Chr5g0436871	38.788	165	67	3	2	142	55	209	5.03e-29	105
Msa1108030	MtrunA17_Chr3g0127671	37.079	178	74	4	1	143	868	1042	1.82e-28	109
Msa1108030	MtrunA17_Chr5g0408621	39.634	164	75	5	1	143	896	1056	2.56e-28	108
Msa1108030	MtrunA17_Chr1g0159871	42.308	156	76	3	1	142	779	934	3.66e-28	108
Msa1108030	MtrunA17_Chr5g0436861	41.290	155	77	2	2	142	853	1007	4.70e-28	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1108030	AT3G47110.1	44.156	154	72	3	1	142	868	1019	1.01e-32	122
Msa1108030	AT3G47570.1	40.397	151	79	2	1	141	851	1000	3.32e-28	108
Msa1108030	AT5G20480.1	41.549	142	81	2	1	142	861	1000	3.79e-27	105
Msa1108030	AT5G20480.2	41.549	142	81	2	1	142	861	1000	3.79e-27	105
Msa1108030	AT3G47090.1	38.158	152	83	2	1	142	850	1000	6.63e-27	105
Msa1108030	AT3G47580.1	39.490	157	74	3	1	142	852	1002	1.02e-26	104
Msa1108030	AT5G39390.1	38.462	143	86	1	1	143	358	498	4.26e-25	99.8
Msa1108030	AT2G24130.2	34.161	161	87	5	1	142	815	975	1.21e-17	79.0
Msa1108030	AT2G24130.1	34.161	161	87	5	1	142	800	960	1.37e-17	78.6
Msa1108030	AT1G72300.1	34.437	151	74	6	3	141	943	1080	1.44e-17	78.6

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Find 169 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCTCCAAGTGCAGAA+GGG	0.662780	7_3:-50519480	None:intergenic
AAACTTGACCAGTTTGGGAA+TGG	0.477512	7_3:+50517322	Msa1108030:five_prime_UTR
AAAGGAACTCTTTCAAGTGA+TGG	0.542754	7_3:+50518295	Msa1108030:five_prime_UTR
AAATCATACAGAGTATGGAA+TGG	0.591498	7_3:+50519450	Msa1108030:intron
AACTACTACTATAAAGGATT+TGG	0.337981	7_3:+50518180	Msa1108030:five_prime_UTR
AACTAGCTTACCTATTTCAA+AGG	0.471826	7_3:-50517663	None:intergenic
AACTATGTCAGCTAGCCTAA+AGG	0.474684	7_3:+50518750	Msa1108030:CDS
AAGAGAAACTACTACTATAA+AGG	0.372749	7_3:+50518174	Msa1108030:five_prime_UTR
AAGAGAAGTACAATTAATCA+AGG	0.518521	7_3:-50517159	None:intergenic
AAGGGAAAGACATACCTGGA+GGG	0.656933	7_3:-50518789	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATAAACTTAGGGTTTGAAA+TGG	-	chr7_3:50516357-50516376	None:intergenic	30.0%
CATTTCAAACCCTAAGTTTA+TGG	+	chr7_3:50516355-50516374	Msa1108030:five_prime_UTR	30.0%
GAGCTAAGTATATTATCTTC+TGG	+	chr7_3:50516651-50516670	Msa1108030:five_prime_UTR	30.0%
GAAAAATTTCCTATCCATGT+TGG	-	chr7_3:50516702-50516721	None:intergenic	30.0%
CTAAATGGAAATCACTTGTA+TGG	+	chr7_3:50516813-50516832	Msa1108030:five_prime_UTR	30.0%
ATTATCAAATGCTTCAAGGT+TGG	+	chr7_3:50516998-50517017	Msa1108030:five_prime_UTR	30.0%
TTTACCATTTCCAAGTCTAT+TGG	-	chr7_3:50517114-50517133	None:intergenic	30.0%
TCAAGGAAGTAAGAAAATTC+AGG	-	chr7_3:50517145-50517164	None:intergenic	30.0%
CAAGGTTACTTATTCCAATA+GGG	-	chr7_3:50517301-50517320	None:intergenic	30.0%
ACAAGGTTACTTATTCCAAT+AGG	-	chr7_3:50517302-50517321	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	50516319	50519860	50516319	ID=Msa1108030;Name=Msa1108030
chr7_3	mRNA	50516319	50519860	50516319	ID=Msa1108030-mRNA-1;Parent=Msa1108030;Name=Msa1108030-mRNA-1;_AED=0.04;_eAED=0.04;_QI=2357\|0.5\|0.33\|1\|1\|1\|3\|0\|143
chr7_3	exon	50516319	50518796	50516319	ID=Msa1108030-mRNA-1:exon:10339;Parent=Msa1108030-mRNA-1
chr7_3	exon	50519461	50519568	50519461	ID=Msa1108030-mRNA-1:exon:10340;Parent=Msa1108030-mRNA-1
chr7_3	exon	50519658	50519860	50519658	ID=Msa1108030-mRNA-1:exon:10341;Parent=Msa1108030-mRNA-1
chr7_3	five_prime_UTR	50516319	50518675	50516319	ID=Msa1108030-mRNA-1:five_prime_utr;Parent=Msa1108030-mRNA-1
chr7_3	CDS	50518676	50518796	50518676	ID=Msa1108030-mRNA-1:cds;Parent=Msa1108030-mRNA-1
chr7_3	CDS	50519461	50519568	50519461	ID=Msa1108030-mRNA-1:cds;Parent=Msa1108030-mRNA-1
chr7_3	CDS	50519658	50519860	50519658	ID=Msa1108030-mRNA-1:cds;Parent=Msa1108030-mRNA-1

Gene Sequence

>Msa1108030

ATGGTAGCACATGTTGGTGACTTTGGTTTAGCTACATTTCTGTTTGAAGAATCATGTGATTCTCCCAAACATTCAACTATGTCAGCTAGCCTAAAGGGCTCTATTGGGTACATCCCTCCAGAGTATGGAATGGGTGGACACCCTTCTGCACTTGGAGATGTTTACAGTTATGGGATACTATTGCTAGAGATTTTCACAGGAAAAAGACCAACAAATGAGATGTTTGAAGAATTTGATGGAAAAGATGATGATTACAGTGAAGAGTTAGCATTAAGGAGAGAGAAGGAACCTGGAGACTTCTCTACTATGGAGAATTGTTTGGTTTCTGTGTTGCAAATTGGAGTGTCATGCTCTTCAACTTCACCAAGTGAACGAATACCTATGACTGTGGTTGTCAACAAACTGCATGCAATCAATCAAGAACTCATTTAA

Protein sequence

>Msa1108030

MVAHVGDFGLATFLFEESCDSPKHSTMSASLKGSIGYIPPEYGMGGHPSALGDVYSYGILLLEIFTGKRPTNEMFEEFDGKDDDYSEELALRREKEPGDFSTMENCLVSVLQIGVSCSSTSPSERIPMTVVVNKLHAINQELI*