Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108480 | XP_003623293.1 | 98.214 | 168 | 3 | 0 | 1 | 168 | 1 | 168 | 9.05e-109 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108480 | sp|O49595|HMGB1_ARATH | 70.548 | 146 | 40 | 1 | 3 | 148 | 5 | 147 | 4.13e-62 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108480 | G7KS90 | 98.214 | 168 | 3 | 0 | 1 | 168 | 1 | 168 | 4.32e-109 | 317 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1108480 | TR | HMG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108480 | MtrunA17_Chr7g0242251 | 98.214 | 168 | 3 | 0 | 1 | 168 | 1 | 168 | 8.32e-113 | 317 |
| Msa1108480 | MtrunA17_Chr3g0143991 | 79.221 | 77 | 16 | 0 | 46 | 122 | 40 | 116 | 3.00e-36 | 123 |
| Msa1108480 | MtrunA17_Chr8g0370431 | 56.349 | 126 | 47 | 3 | 16 | 141 | 9 | 126 | 5.13e-35 | 119 |
| Msa1108480 | MtrunA17_Chr5g0407011 | 54.286 | 140 | 48 | 5 | 16 | 154 | 9 | 133 | 3.67e-32 | 112 |
| Msa1108480 | MtrunA17_Chr1g0212341 | 50.000 | 114 | 53 | 2 | 47 | 157 | 98 | 210 | 4.34e-27 | 101 |
| Msa1108480 | MtrunA17_Chr4g0052011 | 48.315 | 89 | 46 | 0 | 38 | 126 | 51 | 139 | 6.67e-22 | 86.3 |
| Msa1108480 | MtrunA17_Chr1g0155251 | 43.820 | 89 | 48 | 2 | 47 | 134 | 554 | 641 | 2.46e-12 | 63.9 |
| Msa1108480 | MtrunA17_Chr8g0387931 | 43.421 | 76 | 40 | 1 | 47 | 122 | 262 | 334 | 2.48e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108480 | AT3G51880.2 | 67.081 | 161 | 50 | 1 | 3 | 163 | 5 | 162 | 1.28e-63 | 194 |
| Msa1108480 | AT3G51880.5 | 70.548 | 146 | 40 | 1 | 3 | 148 | 5 | 147 | 4.19e-63 | 192 |
| Msa1108480 | AT3G51880.1 | 70.548 | 146 | 40 | 1 | 3 | 148 | 5 | 147 | 4.19e-63 | 192 |
| Msa1108480 | AT3G51880.3 | 70.548 | 146 | 40 | 1 | 3 | 148 | 5 | 147 | 4.19e-63 | 192 |
| Msa1108480 | AT3G51880.4 | 69.784 | 139 | 39 | 1 | 3 | 141 | 5 | 140 | 7.54e-59 | 181 |
| Msa1108480 | AT1G20693.2 | 63.866 | 119 | 37 | 1 | 42 | 160 | 29 | 141 | 2.65e-41 | 135 |
| Msa1108480 | AT1G20696.1 | 62.903 | 124 | 42 | 1 | 22 | 141 | 2 | 125 | 6.61e-40 | 132 |
| Msa1108480 | AT1G20693.3 | 68.000 | 100 | 32 | 0 | 42 | 141 | 29 | 128 | 2.81e-38 | 128 |
| Msa1108480 | AT1G20693.1 | 68.000 | 100 | 32 | 0 | 42 | 141 | 29 | 128 | 2.90e-38 | 128 |
| Msa1108480 | AT2G17560.2 | 60.000 | 115 | 42 | 2 | 42 | 155 | 26 | 137 | 9.69e-37 | 124 |
| Msa1108480 | AT2G17560.1 | 60.000 | 115 | 42 | 2 | 42 | 155 | 26 | 137 | 9.69e-37 | 124 |
| Msa1108480 | AT2G17560.3 | 62.162 | 111 | 38 | 2 | 42 | 151 | 26 | 133 | 1.08e-36 | 124 |
| Msa1108480 | AT1G20696.2 | 64.486 | 107 | 34 | 1 | 24 | 126 | 4 | 110 | 3.62e-35 | 120 |
| Msa1108480 | AT1G20696.5 | 66.667 | 102 | 30 | 1 | 25 | 122 | 5 | 106 | 4.28e-35 | 120 |
| Msa1108480 | AT1G20696.3 | 63.636 | 88 | 32 | 0 | 59 | 146 | 1 | 88 | 3.72e-29 | 103 |
| Msa1108480 | AT1G20696.4 | 63.855 | 83 | 30 | 0 | 59 | 141 | 1 | 83 | 6.09e-27 | 98.2 |
| Msa1108480 | AT4G35570.1 | 50.000 | 94 | 43 | 1 | 43 | 132 | 26 | 119 | 6.00e-26 | 96.3 |
| Msa1108480 | AT4G35570.2 | 50.000 | 94 | 43 | 1 | 43 | 132 | 26 | 119 | 6.00e-26 | 96.3 |
| Msa1108480 | AT2G34450.4 | 44.944 | 89 | 49 | 0 | 51 | 139 | 63 | 151 | 1.10e-21 | 86.3 |
| Msa1108480 | AT2G34450.3 | 44.944 | 89 | 49 | 0 | 51 | 139 | 63 | 151 | 1.10e-21 | 86.3 |
| Msa1108480 | AT2G34450.1 | 44.944 | 89 | 49 | 0 | 51 | 139 | 63 | 151 | 1.10e-21 | 86.3 |
| Msa1108480 | AT5G23420.1 | 54.651 | 86 | 38 | 1 | 31 | 116 | 95 | 179 | 3.26e-21 | 87.0 |
| Msa1108480 | AT2G34450.2 | 44.444 | 90 | 49 | 1 | 51 | 139 | 63 | 152 | 2.68e-20 | 82.8 |
Find 64 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTTTGTTGGGATCTTTCT+TGG | 0.125613 | 7_3:-51402661 | None:intergenic |
| GCTGATACGGCCTTCACATT+AGG | 0.277113 | 7_3:-51402829 | None:intergenic |
| TTTGCAGCCTTGGCTTCATA+TGG | 0.316878 | 7_3:-51403267 | None:intergenic |
| CTGATACGGCCTTCACATTA+GGG | 0.334691 | 7_3:-51402828 | None:intergenic |
| CTTGAACTTCCCTCAGTTGT+TGG | 0.336610 | 7_3:+51404047 | Msa1108480:three_prime_UTR |
| TTCTTCTCCTTCTTAGTCTT+CGG | 0.339805 | 7_3:-51402636 | None:intergenic |
| TTCTCTTCTTGCTGTGTCTT+CGG | 0.353067 | 7_3:+51400699 | Msa1108480:five_prime_UTR |
| TGATTGTAGGTTGGAAAGGC+TGG | 0.360863 | 7_3:+51402939 | Msa1108480:intron |
| CAAACTACTCAAACTAAGTT+TGG | 0.361366 | 7_3:-51404200 | None:intergenic |
| GAATATTTATCTCTTATTGC+TGG | 0.368858 | 7_3:+51404005 | Msa1108480:three_prime_UTR |
| CTTGAAATGTAATGTTTCAT+TGG | 0.378480 | 7_3:+51403924 | Msa1108480:three_prime_UTR |
| TTAGTCTTCGGCACCTTCTC+AGG | 0.378622 | 7_3:-51402624 | None:intergenic |
| ATGAAGCCAAGGCTGCAAAA+AGG | 0.405842 | 7_3:+51403271 | Msa1108480:CDS |
| TCTGTTGTTTACAGAAAAGT+AGG | 0.425631 | 7_3:+51402579 | Msa1108480:intron |
| CGTCCTCTTCCTCATCATCT+TGG | 0.438258 | 7_3:-51403845 | None:intergenic |
| TACTTTAGCCAGCACATTTG+AGG | 0.438345 | 7_3:-51404103 | None:intergenic |
| GAAAGGCTGGAGGAGAGAAA+TGG | 0.460200 | 7_3:+51402952 | Msa1108480:CDS |
| TCGTCATCGTCTGCTGAACT+TGG | 0.468994 | 7_3:-51403421 | None:intergenic |
| GAAACTAACCGGTCATCAAC+TGG | 0.469423 | 7_3:-51401535 | None:intergenic |
| AGGGAACAGCAAAGACTTCA+AGG | 0.490288 | 7_3:+51401500 | Msa1108480:CDS |
| GAAATGGAAATCCTTGACTA+AGG | 0.502988 | 7_3:+51402968 | Msa1108480:CDS |
| CAGAAAAGTAGGAAAGAGAA+AGG | 0.505983 | 7_3:+51402590 | Msa1108480:intron |
| GAATCAAAGAGACAAAGGTT+AGG | 0.506969 | 7_3:-51400679 | None:intergenic |
| CCTCTTCCTCATCATCTTGG+TGG | 0.513999 | 7_3:-51403842 | None:intergenic |
| AGAACAAAGACGATGACAAA+GGG | 0.517164 | 7_3:+51401475 | Msa1108480:exon |
| CTGAGGGAAGTTCAAGTGGC+TGG | 0.523259 | 7_3:-51404040 | None:intergenic |
| ATGTAAACTTACAGCTGATA+CGG | 0.526858 | 7_3:-51402842 | None:intergenic |
| CAGGAAGACGAAGAAAGCGC+TGG | 0.539312 | 7_3:-51402694 | None:intergenic |
| CCACCAAGATGATGAGGAAG+AGG | 0.540543 | 7_3:+51403842 | Msa1108480:CDS |
| GGATTTCAGAAAGACTTTCA+AGG | 0.542513 | 7_3:+51402798 | Msa1108480:CDS |
| AATGTTTCATTGGTGGAGGG+AGG | 0.542878 | 7_3:+51403934 | Msa1108480:three_prime_UTR |
| GAAGACTAAGAAGGAGAAGA+AGG | 0.543831 | 7_3:+51402638 | Msa1108480:CDS |
| ATGTAATGTTTCATTGGTGG+AGG | 0.546233 | 7_3:+51403930 | Msa1108480:three_prime_UTR |
| GAAGAGAATCAAAGAGACAA+AGG | 0.548401 | 7_3:-51400684 | None:intergenic |
| GAAGGTGCCGAAGACTAAGA+AGG | 0.551891 | 7_3:+51402629 | Msa1108480:CDS |
| GCATTGTGCCTCAAATGTGC+TGG | 0.552784 | 7_3:+51404095 | Msa1108480:three_prime_UTR |
| AATAATGAAGATGAAGCAAG+TGG | 0.555668 | 7_3:+51403475 | Msa1108480:CDS |
| GATTTGATTGTAGGTTGGAA+AGG | 0.555671 | 7_3:+51402935 | Msa1108480:intron |
| GGCTGCTGCTAAACCTGAGA+AGG | 0.556201 | 7_3:+51402611 | Msa1108480:CDS |
| GAAATGTAATGTTTCATTGG+TGG | 0.557187 | 7_3:+51403927 | Msa1108480:three_prime_UTR |
| TGAAGATGAAGCAAGTGGAG+AGG | 0.558529 | 7_3:+51403480 | Msa1108480:CDS |
| TGTAATGTTTCATTGGTGGA+GGG | 0.566835 | 7_3:+51403931 | Msa1108480:three_prime_UTR |
| ATGGATAAAGGGATGAAGAG+AGG | 0.584302 | 7_3:-51400747 | None:intergenic |
| AAGACGATGACAAAGGGCAA+GGG | 0.591498 | 7_3:+51401481 | Msa1108480:exon |
| AAAGACGATGACAAAGGGCA+AGG | 0.592167 | 7_3:+51401480 | Msa1108480:exon |
| GGCAGAGAACCCTAATGTGA+AGG | 0.592629 | 7_3:+51402819 | Msa1108480:CDS |
| AAAAGCTCCATATGAAGCCA+AGG | 0.600500 | 7_3:+51403260 | Msa1108480:CDS |
| TTGTAGGTTGGAAAGGCTGG+AGG | 0.616392 | 7_3:+51402942 | Msa1108480:intron |
| AAGTTCAGCAGACGATGACG+AGG | 0.618963 | 7_3:+51403423 | Msa1108480:CDS |
| TAGAACAAAGACGATGACAA+AGG | 0.620970 | 7_3:+51401474 | Msa1108480:exon |
| ACAACTGAGGGAAGTTCAAG+TGG | 0.622358 | 7_3:-51404044 | None:intergenic |
| ATTGCTTACAGCCTTAGTCA+AGG | 0.624911 | 7_3:-51402979 | None:intergenic |
| TTGGTGCATACATAGTGTGT+AGG | 0.626919 | 7_3:-51404181 | None:intergenic |
| AGGAAGACGAAGAAAGCGCT+GGG | 0.627394 | 7_3:-51402693 | None:intergenic |
| GGATGACCACCAAGATGATG+AGG | 0.630902 | 7_3:+51403836 | Msa1108480:intron |
| GGGAACAGCAAAGACTTCAA+GGG | 0.641543 | 7_3:+51401501 | Msa1108480:CDS |
| TTCAGCAGACGATGACGAGG+AGG | 0.645849 | 7_3:+51403426 | Msa1108480:CDS |
| GTACAATAACCAACAACTGA+GGG | 0.647202 | 7_3:-51404056 | None:intergenic |
| AGTACAATAACCAACAACTG+AGG | 0.654621 | 7_3:-51404057 | None:intergenic |
| TATGAATGCTTATAATAACA+AGG | 0.656932 | 7_3:+51403314 | Msa1108480:CDS |
| TGACGAGGAGGAATCAGACA+AGG | 0.693157 | 7_3:+51403438 | Msa1108480:CDS |
| ATTTGAGGCACAATGCACAA+AGG | 0.700540 | 7_3:-51404088 | None:intergenic |
| TGATGAGGAAGAGGACGACG+AGG | 0.702863 | 7_3:+51403851 | Msa1108480:CDS |
| AAGACGAAGAAAGCGCTGGG+AGG | 0.712358 | 7_3:-51402690 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTTGTTTTTTTTA+AGG | + | chr7_3:51400969-51400988 | Msa1108480:intron | 10.0% |
| !! | ATAATCATTAATCATAAAAA+GGG | - | chr7_3:51401123-51401142 | None:intergenic | 10.0% |
| !! | AATAATCATTAATCATAAAA+AGG | - | chr7_3:51401124-51401143 | None:intergenic | 10.0% |
| !!! | TATTTTTATTCCAAAATTTA+TGG | + | chr7_3:51402360-51402379 | Msa1108480:intron | 10.0% |
| !!! | TTAAGGTTTATGTTTTTTTT+AGG | + | chr7_3:51400854-51400873 | Msa1108480:intron | 15.0% |
| !! | TAATCATTAATCATAAAAAG+GGG | - | chr7_3:51401122-51401141 | None:intergenic | 15.0% |
| !!! | TTTTTATTCAAAAAATGTTC+TGG | + | chr7_3:51401943-51401962 | Msa1108480:intron | 15.0% |
| !! | GAAATAAGAAAGAAAAAAAA+AGG | - | chr7_3:51402133-51402152 | None:intergenic | 15.0% |
| !!! | TTTTTATTCAAAAAATGTTC+TGG | + | chr7_3:51401943-51401962 | Msa1108480:intron | 15.0% |
| !! | TTATTTCAAAGAAAAATATG+CGG | - | chr7_3:51403748-51403767 | None:intergenic | 15.0% |
| !! | TTACCTTAAAAATGGATAAA+GGG | - | chr7_3:51400761-51400780 | None:intergenic | 20.0% |
| !!! | TTCTTTGTTTTTTGTGTTTA+AGG | + | chr7_3:51400837-51400856 | Msa1108480:intron | 20.0% |
| !!! | TTTGTTTTGTTTTGTGTTTA+AGG | + | chr7_3:51400941-51400960 | Msa1108480:intron | 20.0% |
| !!! | ATGAATTATGCTTTTTACTT+AGG | + | chr7_3:51401211-51401230 | Msa1108480:intron | 20.0% |
| !! | ATACACATTTATTACTCTAT+AGG | - | chr7_3:51402211-51402230 | None:intergenic | 20.0% |
| !!! | GTGTATATATTTTTTTGCTT+CGG | + | chr7_3:51402225-51402244 | Msa1108480:intron | 20.0% |
| !! | AAGTTAGAAATACGAAAAAA+AGG | - | chr7_3:51402334-51402353 | None:intergenic | 20.0% |
| !! | AACTGTTACAAATCATTAAT+TGG | - | chr7_3:51402444-51402463 | None:intergenic | 20.0% |
| !!! | AATAGTTTTCTATTCATTCT+AGG | + | chr7_3:51402470-51402489 | Msa1108480:intron | 20.0% |
| !!! | CTTTCTTATTTTGAATGTAA+AGG | + | chr7_3:51403236-51403255 | Msa1108480:intron | 20.0% |
| !! | TATGAATGCTTATAATAACA+AGG | + | chr7_3:51403314-51403333 | Msa1108480:CDS | 20.0% |
| !!! | CTAATTTGTTCTTACAAAAT+TGG | - | chr7_3:51403650-51403669 | None:intergenic | 20.0% |
| !!! | CAATTTTGTAAGAACAAATT+AGG | + | chr7_3:51403648-51403667 | Msa1108480:intron | 20.0% |
| !! | TATGAAAAAAACCTTCATTA+TGG | + | chr7_3:51403775-51403794 | Msa1108480:intron | 20.0% |
| ! | GTTACCTTAAAAATGGATAA+AGG | - | chr7_3:51400762-51400781 | None:intergenic | 25.0% |
| ! | AAAAAGGGTTACCTTAAAAA+TGG | - | chr7_3:51400769-51400788 | None:intergenic | 25.0% |
| ! | TACCTTGATATTATGTGATA+TGG | + | chr7_3:51401143-51401162 | Msa1108480:intron | 25.0% |
| ! | TTCCATATCACATAATATCA+AGG | - | chr7_3:51401148-51401167 | None:intergenic | 25.0% |
| ! | ATGTGATATGGAAAAATTGA+AGG | + | chr7_3:51401155-51401174 | Msa1108480:intron | 25.0% |
| ! | TGTGATATGGAAAAATTGAA+GGG | + | chr7_3:51401156-51401175 | Msa1108480:intron | 25.0% |
| !!! | TGATCACTAACTTTTTTTGT+TGG | + | chr7_3:51401359-51401378 | Msa1108480:intron | 25.0% |
| ! | TGTTAACTGATATCGTAATA+TGG | + | chr7_3:51401574-51401593 | Msa1108480:intron | 25.0% |
| !!! | ATTGATAGCACTTTTATACA+TGG | - | chr7_3:51401664-51401683 | None:intergenic | 25.0% |
| !! | TTAAAGAGAAGAAACTTTTG+CGG | - | chr7_3:51401755-51401774 | None:intergenic | 25.0% |
| ! | ATTTATTACTCTATAGGTGA+AGG | - | chr7_3:51402205-51402224 | None:intergenic | 25.0% |
| ! | AAATCCTCACTATAAAAGAA+TGG | - | chr7_3:51402784-51402803 | None:intergenic | 25.0% |
| ! | TAATTCGTGTCTGAAAAATT+TGG | + | chr7_3:51402904-51402923 | Msa1108480:intron | 25.0% |
| ! | GGATTTATTCTGTTGAATAA+TGG | + | chr7_3:51403185-51403204 | Msa1108480:intron | 25.0% |
| ! | AAACAACAAAACTAGAAACA+CGG | - | chr7_3:51403350-51403369 | None:intergenic | 25.0% |
| !!! | TCTTACAAAATTGGTTTGTA+AGG | - | chr7_3:51403641-51403660 | None:intergenic | 25.0% |
| ! | TGACATGTTCCAAAATTTAA+AGG | + | chr7_3:51403706-51403725 | Msa1108480:intron | 25.0% |
| ! | GACATGTTCCAAAATTTAAA+GGG | + | chr7_3:51403707-51403726 | Msa1108480:intron | 25.0% |
| ! | ACATGTTCCAAAATTTAAAG+GGG | + | chr7_3:51403708-51403727 | Msa1108480:intron | 25.0% |
| !! | TTTTATGCCCCTTTAAATTT+TGG | - | chr7_3:51403718-51403737 | None:intergenic | 25.0% |
| ! | CTTGAAATGTAATGTTTCAT+TGG | + | chr7_3:51403924-51403943 | Msa1108480:three_prime_UTR | 25.0% |
| ! | GAATATTTATCTCTTATTGC+TGG | + | chr7_3:51404005-51404024 | Msa1108480:three_prime_UTR | 25.0% |
| !! | CATCCCTTTATCCATTTTTA+AGG | + | chr7_3:51400755-51400774 | Msa1108480:five_prime_UTR | 30.0% |
| CAGAGGAAAAAAGAGAAAAA+GGG | - | chr7_3:51400784-51400803 | None:intergenic | 30.0% | |
| ATGATGTTTGATGAGTTATG+AGG | + | chr7_3:51400893-51400912 | Msa1108480:intron | 30.0% | |
| TTGGTCAAATATCTGAATTG+AGG | + | chr7_3:51401056-51401075 | Msa1108480:intron | 30.0% | |
| !!! | TAGGTTTTAAATCACAGTCA+AGG | + | chr7_3:51401230-51401249 | Msa1108480:intron | 30.0% |
| TTTAAATCACAGTCAAGGTT+TGG | + | chr7_3:51401235-51401254 | Msa1108480:intron | 30.0% | |
| CCATAATACAACTATCATTG+AGG | - | chr7_3:51401298-51401317 | None:intergenic | 30.0% | |
| CCTCAATGATAGTTGTATTA+TGG | + | chr7_3:51401295-51401314 | Msa1108480:intron | 30.0% | |
| !!! | ACTTTTTTTGTTGGAAACCT+TGG | + | chr7_3:51401368-51401387 | Msa1108480:intron | 30.0% |
| ACTACAAAACACTTAAGCTT+GGG | + | chr7_3:51401396-51401415 | Msa1108480:intron | 30.0% | |
| !! | TAAGCTTGGGAAATTGATTT+TGG | + | chr7_3:51401409-51401428 | Msa1108480:intron | 30.0% |
| TGATTATAGACACTTCATAG+TGG | + | chr7_3:51401687-51401706 | Msa1108480:intron | 30.0% | |
| CAAACTGTCCCAAAAATTAT+CGG | - | chr7_3:51401723-51401742 | None:intergenic | 30.0% | |
| AATACGAAAAAAAGATGCCA+CGG | - | chr7_3:51401907-51401926 | None:intergenic | 30.0% | |
| !! | AAAGAAAAAAAAAGGTGCCT+CGG | - | chr7_3:51402125-51402144 | None:intergenic | 30.0% |
| ! | CAGATCTTGACCATAAATTT+TGG | - | chr7_3:51402373-51402392 | None:intergenic | 30.0% |
| ! | TCTATTCATTCTAGGCTTTT+TGG | + | chr7_3:51402478-51402497 | Msa1108480:intron | 30.0% |
| ! | GAGCTTGAATAACTTTTTAG+CGG | - | chr7_3:51402506-51402525 | None:intergenic | 30.0% |
| ! | TCTGTTGTTTACAGAAAAGT+AGG | + | chr7_3:51402579-51402598 | Msa1108480:intron | 30.0% |
| ! | TAAGTCAGACAACTTTAAAG+AGG | - | chr7_3:51402757-51402776 | None:intergenic | 30.0% |
| ! | TGTTCCATTCTTTTATAGTG+AGG | + | chr7_3:51402777-51402796 | Msa1108480:intron | 30.0% |
| ATGTAAACTTACAGCTGATA+CGG | - | chr7_3:51402845-51402864 | None:intergenic | 30.0% | |
| !! | GTGTACTTTGATTTGATTGT+AGG | + | chr7_3:51402926-51402945 | Msa1108480:intron | 30.0% |
| !! | ACTTTGATTTGATTGTAGGT+TGG | + | chr7_3:51402930-51402949 | Msa1108480:intron | 30.0% |
| ACACAGATATGTTAATACAG+TGG | - | chr7_3:51403139-51403158 | None:intergenic | 30.0% | |
| GACATCATTATACTGAAAAG+AGG | + | chr7_3:51403164-51403183 | Msa1108480:intron | 30.0% | |
| AACAACAAAACTAGAAACAC+GGG | - | chr7_3:51403349-51403368 | None:intergenic | 30.0% | |
| AATAATGAAGATGAAGCAAG+TGG | + | chr7_3:51403475-51403494 | Msa1108480:CDS | 30.0% | |
| ! | TTGTCCATCAAACTCTAAAA+GGG | + | chr7_3:51403606-51403625 | Msa1108480:intron | 30.0% |
| TCTAAAGAATGAACCATCTT+AGG | - | chr7_3:51403686-51403705 | None:intergenic | 30.0% | |
| ! | CACATTTTATGCCATAATGA+AGG | - | chr7_3:51403789-51403808 | None:intergenic | 30.0% |
| GAAATGTAATGTTTCATTGG+TGG | + | chr7_3:51403927-51403946 | Msa1108480:three_prime_UTR | 30.0% | |
| !! | TTTCATTTTGATCGATGCTT+TGG | + | chr7_3:51404135-51404154 | Msa1108480:three_prime_UTR | 30.0% |
| CAAACTACTCAAACTAAGTT+TGG | - | chr7_3:51404203-51404222 | None:intergenic | 30.0% | |
| GAATCAAAGAGACAAAGGTT+AGG | - | chr7_3:51400682-51400701 | None:intergenic | 35.0% | |
| GAAGAGAATCAAAGAGACAA+AGG | - | chr7_3:51400687-51400706 | None:intergenic | 35.0% | |
| GCAGAGGAAAAAAGAGAAAA+AGG | - | chr7_3:51400785-51400804 | None:intergenic | 35.0% | |
| CAAAAGAGATATTGAAGCAG+AGG | - | chr7_3:51400801-51400820 | None:intergenic | 35.0% | |
| GAGAAAAGATGCTGAATTGT+TGG | + | chr7_3:51401037-51401056 | Msa1108480:intron | 35.0% | |
| CTCCATGACGAAAAAAACTT+TGG | + | chr7_3:51401319-51401338 | Msa1108480:intron | 35.0% | |
| !!! | CACCAAAGTTTTTTTCGTCA+TGG | - | chr7_3:51401324-51401343 | None:intergenic | 35.0% |
| GACTACAAAACACTTAAGCT+TGG | + | chr7_3:51401395-51401414 | Msa1108480:intron | 35.0% | |
| TAGAACAAAGACGATGACAA+AGG | + | chr7_3:51401474-51401493 | Msa1108480:exon | 35.0% | |
| AGAACAAAGACGATGACAAA+GGG | + | chr7_3:51401475-51401494 | Msa1108480:exon | 35.0% | |
| !!! | TTTTGAAACCAGTTGATGAC+CGG | + | chr7_3:51401527-51401546 | Msa1108480:CDS | 35.0% |
| GCGATGATATAGAAACTAAC+CGG | - | chr7_3:51401549-51401568 | None:intergenic | 35.0% | |
| TTGTATGTCATTGTCCGTAA+AGG | + | chr7_3:51401620-51401639 | Msa1108480:intron | 35.0% | |
| GTAAATCACCAACACCTTTA+CGG | - | chr7_3:51401637-51401656 | None:intergenic | 35.0% | |
| !!! | CAAAGGCTTTTTAAAACACG+AGG | + | chr7_3:51401864-51401883 | Msa1108480:intron | 35.0% |
| !! | AATACGAAAAAAAGGTGCCT+CGG | - | chr7_3:51402326-51402345 | None:intergenic | 35.0% |
| AATATTACTCTCTAGGCAAG+GGG | - | chr7_3:51402400-51402419 | None:intergenic | 35.0% | |
| GAATATTACTCTCTAGGCAA+GGG | - | chr7_3:51402401-51402420 | None:intergenic | 35.0% | |
| TTGCTCGAATATTACTCTCT+AGG | - | chr7_3:51402407-51402426 | None:intergenic | 35.0% | |
| CAAATCATTAATTGGTGCAG+TGG | - | chr7_3:51402436-51402455 | None:intergenic | 35.0% | |
| GTACAGGAATAATGTACTGA+TGG | + | chr7_3:51402546-51402565 | Msa1108480:intron | 35.0% | |
| CAGAAAAGTAGGAAAGAGAA+AGG | + | chr7_3:51402590-51402609 | Msa1108480:intron | 35.0% | |
| ! | TTCTTCTCCTTCTTAGTCTT+CGG | - | chr7_3:51402639-51402658 | None:intergenic | 35.0% |
| TGACAGACAAAGATACTAAC+AGG | - | chr7_3:51402716-51402735 | None:intergenic | 35.0% | |
| GGATTTCAGAAAGACTTTCA+AGG | + | chr7_3:51402798-51402817 | Msa1108480:CDS | 35.0% | |
| AGATACATCACGATACACAA+CGG | - | chr7_3:51402879-51402898 | None:intergenic | 35.0% | |
| ! | GATTTGATTGTAGGTTGGAA+AGG | + | chr7_3:51402935-51402954 | Msa1108480:intron | 35.0% |
| GAAATGGAAATCCTTGACTA+AGG | + | chr7_3:51402968-51402987 | Msa1108480:CDS | 35.0% | |
| GTTGTCCATCAAACTCTAAA+AGG | + | chr7_3:51403605-51403624 | Msa1108480:intron | 35.0% | |
| !! | AAATTGGTTTGTAAGGTGAG+CGG | - | chr7_3:51403634-51403653 | None:intergenic | 35.0% |
| ATGTAATGTTTCATTGGTGG+AGG | + | chr7_3:51403930-51403949 | Msa1108480:three_prime_UTR | 35.0% | |
| TGTAATGTTTCATTGGTGGA+GGG | + | chr7_3:51403931-51403950 | Msa1108480:three_prime_UTR | 35.0% | |
| !! | TTTTCTAGTAGAGCAACTCA+TGG | + | chr7_3:51403967-51403986 | Msa1108480:three_prime_UTR | 35.0% |
| GTACAATAACCAACAACTGA+GGG | - | chr7_3:51404059-51404078 | None:intergenic | 35.0% | |
| AGTACAATAACCAACAACTG+AGG | - | chr7_3:51404060-51404079 | None:intergenic | 35.0% | |
| ! | TTCTCTTCTTGCTGTGTCTT+CGG | + | chr7_3:51400699-51400718 | Msa1108480:five_prime_UTR | 40.0% |
| ATGGATAAAGGGATGAAGAG+AGG | - | chr7_3:51400750-51400769 | None:intergenic | 40.0% | |
| ! | GTGTTTTGTAGTCACAACCA+AGG | - | chr7_3:51401388-51401407 | None:intergenic | 40.0% |
| !! | GCTTGGGAAATTGATTTTGG+TGG | + | chr7_3:51401412-51401431 | Msa1108480:intron | 40.0% |
| ! | TTTTCAGCTGTAGATCGTCT+TGG | + | chr7_3:51401448-51401467 | Msa1108480:intron | 40.0% |
| ! | AGTCAGAGGCCGATAATTTT+TGG | + | chr7_3:51401711-51401730 | Msa1108480:intron | 40.0% |
| ! | GTCAGAGGCCGATAATTTTT+GGG | + | chr7_3:51401712-51401731 | Msa1108480:intron | 40.0% |
| !!! | ATTTTTGGGACAGTTTGACG+TGG | + | chr7_3:51401726-51401745 | Msa1108480:intron | 40.0% |
| ! | AAGAGAAGAAACTTTTGCGG+TGG | - | chr7_3:51401752-51401771 | None:intergenic | 40.0% |
| TAAAACACGAGGTTGTGAGT+TGG | + | chr7_3:51401875-51401894 | Msa1108480:intron | 40.0% | |
| GTGTTTAAAAAACCTGCGCT+TGG | - | chr7_3:51402282-51402301 | None:intergenic | 40.0% | |
| CGAATATTACTCTCTAGGCA+AGG | - | chr7_3:51402402-51402421 | None:intergenic | 40.0% | |
| GAAGACTAAGAAGGAGAAGA+AGG | + | chr7_3:51402638-51402657 | Msa1108480:CDS | 40.0% | |
| ATTGCTTACAGCCTTAGTCA+AGG | - | chr7_3:51402982-51403001 | None:intergenic | 40.0% | |
| AAAAGCTCCATATGAAGCCA+AGG | + | chr7_3:51403260-51403279 | Msa1108480:CDS | 40.0% | |
| ! | AACTTTCCTTTTTGCAGCCT+TGG | - | chr7_3:51403280-51403299 | None:intergenic | 40.0% |
| !!! | GGTACCCTTTTAGAGTTTGA+TGG | - | chr7_3:51403613-51403632 | None:intergenic | 40.0% |
| GCTCAGTTCAAAACCTAAGA+TGG | + | chr7_3:51403670-51403689 | Msa1108480:intron | 40.0% | |
| ! | ATTTGAGGCACAATGCACAA+AGG | - | chr7_3:51404091-51404110 | None:intergenic | 40.0% |
| TACTTTAGCCAGCACATTTG+AGG | - | chr7_3:51404106-51404125 | None:intergenic | 40.0% | |
| TTGGTGCATACATAGTGTGT+AGG | - | chr7_3:51404184-51404203 | None:intergenic | 40.0% | |
| AAAGACGATGACAAAGGGCA+AGG | + | chr7_3:51401480-51401499 | Msa1108480:exon | 45.0% | |
| AAGACGATGACAAAGGGCAA+GGG | + | chr7_3:51401481-51401500 | Msa1108480:exon | 45.0% | |
| AGGGAACAGCAAAGACTTCA+AGG | + | chr7_3:51401500-51401519 | Msa1108480:CDS | 45.0% | |
| GGGAACAGCAAAGACTTCAA+GGG | + | chr7_3:51401501-51401520 | Msa1108480:CDS | 45.0% | |
| GAAACTAACCGGTCATCAAC+TGG | - | chr7_3:51401538-51401557 | None:intergenic | 45.0% | |
| ! | GTCATTGTCCGTAAAGGTGT+TGG | + | chr7_3:51401626-51401645 | Msa1108480:intron | 45.0% |
| ! | CACTTCATAGTGGAAGTCAG+AGG | + | chr7_3:51401697-51401716 | Msa1108480:intron | 45.0% |
| ACGAAAAAAAGATGCCACGG+AGG | - | chr7_3:51401904-51401923 | None:intergenic | 45.0% | |
| AACCTTTGCTTAGCACTACG+CGG | - | chr7_3:51402069-51402088 | None:intergenic | 45.0% | |
| !! | GAAAAAAAAAGGTGCCTCGG+CGG | - | chr7_3:51402122-51402141 | None:intergenic | 45.0% |
| !!! | GCGCAGGTTTTTTAAACACG+AGG | + | chr7_3:51402283-51402302 | Msa1108480:intron | 45.0% |
| !! | CGGTTTGTTGGGATCTTTCT+TGG | - | chr7_3:51402664-51402683 | None:intergenic | 45.0% |
| !! | GGAGGTCTTTTCGGTTTGTT+GGG | - | chr7_3:51402675-51402694 | None:intergenic | 45.0% |
| CTGATACGGCCTTCACATTA+GGG | - | chr7_3:51402831-51402850 | None:intergenic | 45.0% | |
| ! | TGATTGTAGGTTGGAAAGGC+TGG | + | chr7_3:51402939-51402958 | Msa1108480:intron | 45.0% |
| TTTGCAGCCTTGGCTTCATA+TGG | - | chr7_3:51403270-51403289 | None:intergenic | 45.0% | |
| ATGAAGCCAAGGCTGCAAAA+AGG | + | chr7_3:51403271-51403290 | Msa1108480:CDS | 45.0% | |
| TGAAGATGAAGCAAGTGGAG+AGG | + | chr7_3:51403480-51403499 | Msa1108480:CDS | 45.0% | |
| TAACGATTGCTACCCCACAA+CGG | + | chr7_3:51403575-51403594 | Msa1108480:intron | 45.0% | |
| ACAACCATAACACCGTTGTG+GGG | - | chr7_3:51403590-51403609 | None:intergenic | 45.0% | |
| GACAACCATAACACCGTTGT+GGG | - | chr7_3:51403591-51403610 | None:intergenic | 45.0% | |
| ! | ACCATCTCTCCTTGTTGTAC+AGG | + | chr7_3:51403815-51403834 | Msa1108480:intron | 45.0% |
| TCCTGTACAACAAGGAGAGA+TGG | - | chr7_3:51403819-51403838 | None:intergenic | 45.0% | |
| AATGTTTCATTGGTGGAGGG+AGG | + | chr7_3:51403934-51403953 | Msa1108480:three_prime_UTR | 45.0% | |
| ACAACTGAGGGAAGTTCAAG+TGG | - | chr7_3:51404047-51404066 | None:intergenic | 45.0% | |
| CTTGAACTTCCCTCAGTTGT+TGG | + | chr7_3:51404047-51404066 | Msa1108480:three_prime_UTR | 45.0% | |
| AGCCTTTGCTTGTCGCTATG+CGG | - | chr7_3:51401852-51401871 | None:intergenic | 50.0% | |
| !! | ACGAAAAAAAGGTGCCTCGG+CGG | - | chr7_3:51402323-51402342 | None:intergenic | 50.0% |
| AGTTATTCAAGCTCCGCCAC+CGG | + | chr7_3:51402512-51402531 | Msa1108480:intron | 50.0% | |
| TCCTGTACCACTACTTCCAC+CGG | - | chr7_3:51402534-51402553 | None:intergenic | 50.0% | |
| ! | TTAGTCTTCGGCACCTTCTC+AGG | - | chr7_3:51402627-51402646 | None:intergenic | 50.0% |
| !! | GAAGGTGCCGAAGACTAAGA+AGG | + | chr7_3:51402629-51402648 | Msa1108480:CDS | 50.0% |
| !! | GGGAGGTCTTTTCGGTTTGT+TGG | - | chr7_3:51402676-51402695 | None:intergenic | 50.0% |
| !!! | AAAGCGCTGGGAGGTCTTTT+CGG | - | chr7_3:51402684-51402703 | None:intergenic | 50.0% |
| !! | AGGAAGACGAAGAAAGCGCT+GGG | - | chr7_3:51402696-51402715 | None:intergenic | 50.0% |
| GGCAGAGAACCCTAATGTGA+AGG | + | chr7_3:51402819-51402838 | Msa1108480:CDS | 50.0% | |
| GCTGATACGGCCTTCACATT+AGG | - | chr7_3:51402832-51402851 | None:intergenic | 50.0% | |
| ! | TTGTAGGTTGGAAAGGCTGG+AGG | + | chr7_3:51402942-51402961 | Msa1108480:intron | 50.0% |
| GAAAGGCTGGAGGAGAGAAA+TGG | + | chr7_3:51402952-51402971 | Msa1108480:CDS | 50.0% | |
| TCGTCATCGTCTGCTGAACT+TGG | - | chr7_3:51403424-51403443 | None:intergenic | 50.0% | |
| AAGTTCAGCAGACGATGACG+AGG | + | chr7_3:51403423-51403442 | Msa1108480:CDS | 50.0% | |
| TGACGAGGAGGAATCAGACA+AGG | + | chr7_3:51403438-51403457 | Msa1108480:CDS | 50.0% | |
| GGACAACCATAACACCGTTG+TGG | - | chr7_3:51403592-51403611 | None:intergenic | 50.0% | |
| GGTGGTCATCCTGTACAACA+AGG | - | chr7_3:51403827-51403846 | None:intergenic | 50.0% | |
| GGATGACCACCAAGATGATG+AGG | + | chr7_3:51403836-51403855 | Msa1108480:intron | 50.0% | |
| CCTCTTCCTCATCATCTTGG+TGG | - | chr7_3:51403845-51403864 | None:intergenic | 50.0% | |
| CCACCAAGATGATGAGGAAG+AGG | + | chr7_3:51403842-51403861 | Msa1108480:CDS | 50.0% | |
| CGTCCTCTTCCTCATCATCT+TGG | - | chr7_3:51403848-51403867 | None:intergenic | 50.0% | |
| GCATTGTGCCTCAAATGTGC+TGG | + | chr7_3:51404095-51404114 | Msa1108480:three_prime_UTR | 50.0% | |
| AGCCGCATAGCGACAAGCAA+AGG | + | chr7_3:51401847-51401866 | Msa1108480:intron | 55.0% | |
| ! | TTGTGAGTTGGAGTCCTCCG+TGG | + | chr7_3:51401887-51401906 | Msa1108480:intron | 55.0% |
| AGCCGCGTAGTGCTAAGCAA+AGG | + | chr7_3:51402064-51402083 | Msa1108480:intron | 55.0% | |
| TGTACCACTACTTCCACCGG+TGG | - | chr7_3:51402531-51402550 | None:intergenic | 55.0% | |
| ACCGGTGGAAGTAGTGGTAC+AGG | + | chr7_3:51402530-51402549 | Msa1108480:intron | 55.0% | |
| GGCTGCTGCTAAACCTGAGA+AGG | + | chr7_3:51402611-51402630 | Msa1108480:CDS | 55.0% | |
| !! | AAGACGAAGAAAGCGCTGGG+AGG | - | chr7_3:51402693-51402712 | None:intergenic | 55.0% |
| ! | CAGGAAGACGAAGAAAGCGC+TGG | - | chr7_3:51402697-51402716 | None:intergenic | 55.0% |
| TTCAGCAGACGATGACGAGG+AGG | + | chr7_3:51403426-51403445 | Msa1108480:CDS | 55.0% | |
| ! | GCTACCCCACAACGGTGTTA+TGG | + | chr7_3:51403583-51403602 | Msa1108480:intron | 55.0% |
| TGATGAGGAAGAGGACGACG+AGG | + | chr7_3:51403851-51403870 | Msa1108480:CDS | 55.0% | |
| CTGAGGGAAGTTCAAGTGGC+TGG | - | chr7_3:51404043-51404062 | None:intergenic | 55.0% | |
| TTGTGAGTTCGAGTCCGCCG+AGG | + | chr7_3:51402105-51402124 | Msa1108480:intron | 60.0% | |
| AACCTGCGCTTGGCACTACG+CGG | - | chr7_3:51402272-51402291 | None:intergenic | 60.0% | |
| TTGTGAGTTCGAGTCCGCCG+AGG | + | chr7_3:51402105-51402124 | Msa1108480:intron | 60.0% | |
| TATTCAAGCTCCGCCACCGG+TGG | + | chr7_3:51402515-51402534 | Msa1108480:intron | 60.0% | |
| ACCACTACTTCCACCGGTGG+CGG | - | chr7_3:51402528-51402547 | None:intergenic | 60.0% | |
| TCCGCCACCGGTGGAAGTAG+TGG | + | chr7_3:51402524-51402543 | Msa1108480:intron | 65.0% | |
| AGCCGCGTAGTGCCAAGCGC+AGG | + | chr7_3:51402267-51402286 | Msa1108480:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 51400673 | 51404233 | 51400673 | ID=Msa1108480;Name=Msa1108480 |
| chr7_3 | mRNA | 51400673 | 51404233 | 51400673 | ID=Msa1108480-mRNA-1;Parent=Msa1108480;Name=Msa1108480-mRNA-1;_AED=0.09;_eAED=0.09;_QI=136|1|1|1|0.85|0.75|8|325|172 |
| chr7_3 | exon | 51400673 | 51400776 | 51400673 | ID=Msa1108480-mRNA-1:exon:10556;Parent=Msa1108480-mRNA-1 |
| chr7_3 | exon | 51401455 | 51401548 | 51401455 | ID=Msa1108480-mRNA-1:exon:10557;Parent=Msa1108480-mRNA-1 |
| chr7_3 | exon | 51402593 | 51402715 | 51402593 | ID=Msa1108480-mRNA-1:exon:10558;Parent=Msa1108480-mRNA-1 |
| chr7_3 | exon | 51402795 | 51402852 | 51402795 | ID=Msa1108480-mRNA-1:exon:10559;Parent=Msa1108480-mRNA-1 |
| chr7_3 | exon | 51402948 | 51402992 | 51402948 | ID=Msa1108480-mRNA-1:exon:10560;Parent=Msa1108480-mRNA-1 |
| chr7_3 | exon | 51403258 | 51403335 | 51403258 | ID=Msa1108480-mRNA-1:exon:10561;Parent=Msa1108480-mRNA-1 |
| chr7_3 | exon | 51403421 | 51403501 | 51403421 | ID=Msa1108480-mRNA-1:exon:10562;Parent=Msa1108480-mRNA-1 |
| chr7_3 | exon | 51403837 | 51404233 | 51403837 | ID=Msa1108480-mRNA-1:exon:10563;Parent=Msa1108480-mRNA-1 |
| chr7_3 | five_prime_UTR | 51400673 | 51400776 | 51400673 | ID=Msa1108480-mRNA-1:five_prime_utr;Parent=Msa1108480-mRNA-1 |
| chr7_3 | five_prime_UTR | 51401455 | 51401486 | 51401455 | ID=Msa1108480-mRNA-1:five_prime_utr;Parent=Msa1108480-mRNA-1 |
| chr7_3 | CDS | 51401487 | 51401548 | 51401487 | ID=Msa1108480-mRNA-1:cds;Parent=Msa1108480-mRNA-1 |
| chr7_3 | CDS | 51402593 | 51402715 | 51402593 | ID=Msa1108480-mRNA-1:cds;Parent=Msa1108480-mRNA-1 |
| chr7_3 | CDS | 51402795 | 51402852 | 51402795 | ID=Msa1108480-mRNA-1:cds;Parent=Msa1108480-mRNA-1 |
| chr7_3 | CDS | 51402948 | 51402992 | 51402948 | ID=Msa1108480-mRNA-1:cds;Parent=Msa1108480-mRNA-1 |
| chr7_3 | CDS | 51403258 | 51403335 | 51403258 | ID=Msa1108480-mRNA-1:cds;Parent=Msa1108480-mRNA-1 |
| chr7_3 | CDS | 51403421 | 51403501 | 51403421 | ID=Msa1108480-mRNA-1:cds;Parent=Msa1108480-mRNA-1 |
| chr7_3 | CDS | 51403837 | 51403908 | 51403837 | ID=Msa1108480-mRNA-1:cds;Parent=Msa1108480-mRNA-1 |
| chr7_3 | three_prime_UTR | 51403909 | 51404233 | 51403909 | ID=Msa1108480-mRNA-1:three_prime_utr;Parent=Msa1108480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
