AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1108670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108670 MtrunA17_Chr7g0242521 87.342 237 15 1 1 222 1 237 1.99e-152 422
Msa1108670 MtrunA17_Chr2g0291021 44.586 157 63 4 13 150 49 200 3.72e-35 127
Msa1108670 MtrunA17_Chr7g0254981 48.485 132 46 2 13 125 50 178 3.55e-34 123
Msa1108670 MtrunA17_Chr7g0261911 47.101 138 54 4 1 122 250 384 6.09e-28 110
Msa1108670 MtrunA17_Chr1g0175091 43.478 138 56 4 2 122 246 378 1.63e-27 108
Msa1108670 MtrunA17_Chr2g0310011 45.038 131 50 3 13 124 35 162 5.81e-26 103
Msa1108670 MtrunA17_Chr1g0190301 38.961 154 72 5 13 150 175 322 5.30e-25 100
Msa1108670 MtrunA17_Chr7g0258551 40.625 128 58 2 13 125 212 336 1.17e-24 100
Msa1108670 MtrunA17_Chr8g0356501 35.450 189 86 5 13 182 37 208 1.20e-24 99.4
Msa1108670 MtrunA17_Chr2g0321461 38.255 149 53 3 13 125 45 190 9.33e-24 97.4
Msa1108670 MtrunA17_Chr5g0409731 39.716 141 54 3 13 125 25 162 1.02e-23 96.3
Msa1108670 MtrunA17_Chr4g0042451 35.417 144 63 3 9 125 13 153 1.98e-22 93.2
Msa1108670 MtrunA17_Chr6g0461641 38.926 149 56 5 9 125 38 183 9.15e-22 92.0
Msa1108670 MtrunA17_Chr7g0274471 38.760 129 60 3 13 125 218 343 2.34e-21 91.3
Msa1108670 MtrunA17_Chr5g0417521 34.483 145 64 3 9 125 11 152 9.77e-21 89.0
Msa1108670 MtrunA17_Chr2g0290991 31.111 180 83 4 9 160 35 201 8.92e-19 82.8
Msa1108670 MtrunA17_Chr1g0175071 39.416 137 63 3 3 122 165 298 2.02e-18 82.0
Msa1108670 MtrunA17_Chr1g0197171 32.692 156 67 4 13 143 44 186 1.02e-15 74.3
Msa1108670 MtrunA17_Chr7g0258531 33.813 139 72 2 1 122 201 336 2.26e-14 70.9
Msa1108670 MtrunA17_Chr2g0288601 62.264 53 17 1 15 67 73 122 4.92e-13 63.9
Msa1108670 MtrunA17_Chr3g0095611 46.479 71 32 2 2 69 5 72 8.18e-12 62.4
Msa1108670 MtrunA17_Chr1g0175081 50.000 58 26 1 9 66 18 72 2.00e-11 58.9
Msa1108670 MtrunA17_Chr2g0320231 56.364 55 21 1 15 69 99 150 3.70e-11 61.6
Msa1108670 MtrunA17_Chr8g0379121 56.604 53 20 1 15 67 113 162 6.68e-11 61.2
Msa1108670 MtrunA17_Chr6g0479431 50.909 55 24 1 15 69 204 255 7.44e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108670 AT2G01060.1 43.114 167 73 4 9 156 11 174 2.94e-36 129
Msa1108670 AT5G06800.1 44.186 129 54 2 9 122 188 313 4.15e-28 109
Msa1108670 AT5G06800.2 40.845 142 61 2 9 130 188 326 2.18e-27 107
Msa1108670 AT1G79430.2 39.474 152 61 3 13 145 34 173 4.21e-27 106
Msa1108670 AT4G13640.1 37.500 168 65 4 13 152 37 192 6.22e-27 105
Msa1108670 AT3G24120.1 39.286 168 62 5 13 152 41 196 2.35e-26 103
Msa1108670 AT4G28610.1 46.565 131 50 3 9 122 221 348 2.58e-26 105
Msa1108670 AT1G69580.1 40.397 151 52 4 9 125 30 176 3.01e-25 101
Msa1108670 AT5G29000.1 41.844 141 58 4 2 122 177 313 4.02e-25 101
Msa1108670 AT5G29000.3 41.844 141 58 4 2 122 177 313 4.02e-25 101
Msa1108670 AT1G69580.2 40.132 152 52 4 9 125 30 177 4.56e-25 100
Msa1108670 AT5G29000.2 41.844 141 58 4 2 122 220 356 5.64e-25 101
Msa1108670 AT4G13640.2 36.842 171 65 5 13 152 37 195 6.36e-25 99.8
Msa1108670 AT3G04450.4 34.118 170 85 4 9 154 194 360 6.48e-25 101
Msa1108670 AT3G04450.2 34.118 170 85 4 9 154 194 360 6.48e-25 101
Msa1108670 AT3G04450.1 34.118 170 85 4 9 154 234 400 7.09e-25 101
Msa1108670 AT3G24120.2 38.596 171 62 6 13 152 41 199 2.57e-24 98.2
Msa1108670 AT5G18240.1 42.361 144 49 5 13 125 45 185 7.71e-24 98.2
Msa1108670 AT5G18240.4 42.361 144 49 5 13 125 45 185 7.71e-24 98.2
Msa1108670 AT3G04030.3 40.541 148 54 4 9 125 41 185 9.49e-24 98.2
Msa1108670 AT3G13040.3 40.136 147 63 4 1 125 228 371 1.94e-21 92.0
Msa1108670 AT3G13040.1 40.136 147 63 4 1 125 228 371 1.94e-21 92.0
Msa1108670 AT3G13040.2 40.136 147 63 4 1 125 228 371 1.94e-21 92.0
Msa1108670 AT3G04030.2 39.865 148 54 5 9 125 41 184 3.06e-21 90.9
Msa1108670 AT5G18240.5 40.972 144 49 6 13 125 45 183 9.98e-21 89.7
Msa1108670 AT2G20400.1 39.683 126 57 2 13 122 231 353 1.64e-20 89.0
Msa1108670 AT3G12730.1 35.556 135 60 3 13 123 23 154 1.34e-19 84.3
Msa1108670 AT2G20400.2 37.795 127 59 2 13 122 231 354 1.63e-19 86.3
Msa1108670 AT3G04030.1 38.514 148 51 5 9 125 41 179 2.14e-19 85.9
Msa1108670 AT5G18240.2 40.278 144 46 6 13 125 45 179 2.14e-19 85.9
Msa1108670 AT5G18240.3 40.278 144 46 6 13 125 45 179 2.14e-19 85.9
Msa1108670 AT5G45580.1 35.417 144 56 3 13 122 7 147 5.09e-19 83.2
Msa1108670 AT5G45580.2 35.417 144 56 3 13 122 23 163 6.48e-19 83.2
Msa1108670 AT2G01060.2 38.400 125 58 3 51 156 1 125 1.71e-17 78.6
Msa1108670 AT5G06800.3 55.072 69 26 2 9 77 188 251 9.05e-17 77.4
Msa1108670 AT5G29000.4 55.385 65 26 1 2 66 220 281 2.31e-15 73.9
Msa1108670 AT3G04450.3 55.172 58 23 1 9 66 234 288 1.09e-14 72.0
Msa1108670 AT2G40260.1 55.000 60 24 1 15 74 84 140 3.24e-13 68.2
Msa1108670 AT2G06020.1 51.852 54 23 1 13 66 86 136 3.85e-13 67.4
Msa1108670 AT1G79430.1 33.333 117 50 2 48 145 1 108 7.27e-13 66.6
Msa1108670 AT2G42660.1 60.000 55 19 1 15 69 52 103 8.89e-13 65.9

Find 60 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAAACCTGGAACCTTTCT+TGG 0.254138 7_3:+51725235 Msa1108670:CDS
TACGATATAGAACAGAAATT+TGG 0.266828 7_3:-51724319 None:intergenic
TGGAGGCTGTAAATAGGCTT+GGG 0.332347 7_3:+51722067 Msa1108670:CDS
TCTTTGTGGAGGCTGTAAAT+AGG 0.333114 7_3:+51722061 Msa1108670:CDS
TCCAAGAAAGGTTCCAGGTT+TGG 0.364366 7_3:-51725236 None:intergenic
GCACCTCAGCCTGCATTTGA+AGG 0.377972 7_3:-51724441 None:intergenic
GACCCCAAGAGTTCAGTTAT+GGG 0.387702 7_3:+51721970 Msa1108670:intron
ACACGTCAAAAGCCACTTGC+AGG 0.391889 7_3:+51723195 Msa1108670:CDS
AGACCCCAAGAGTTCAGTTA+TGG 0.391899 7_3:+51721969 Msa1108670:intron
GTGGAGGCTGTAAATAGGCT+TGG 0.397815 7_3:+51722066 Msa1108670:CDS
AAGAAAAGCTTGCAAGCCTT+TGG 0.401704 7_3:+51725050 Msa1108670:CDS
CTGACTCCAAGAAAGGTTCC+AGG 0.408019 7_3:-51725241 None:intergenic
GGAAAGTACCTAGACAGAAT+TGG 0.410201 7_3:+51725000 Msa1108670:CDS
TGCTGTTTGATGTTCTTCCT+CGG 0.424128 7_3:-51725133 None:intergenic
GAACCTTTCTTGGAGTCAGC+TGG 0.440714 7_3:+51725245 Msa1108670:CDS
GGAACCCATAACTGAACTCT+TGG 0.448606 7_3:-51721974 None:intergenic
ATTCCTTTCAGTATACCTCT+TGG 0.449845 7_3:-51723139 None:intergenic
CAGAATTCAGCAACCAAACC+TGG 0.457761 7_3:+51725223 Msa1108670:CDS
GTTGCTGAATTCTGAGGTAG+TGG 0.463218 7_3:-51725214 None:intergenic
AACTAGGCACCAAAGGTGAT+TGG 0.478600 7_3:-51725281 None:intergenic
CAGCCTCCACAAAGAGATCA+TGG 0.480797 7_3:-51722053 None:intergenic
CAGCCAGCTGACTCCAAGAA+AGG 0.496169 7_3:-51725248 None:intergenic
GAACCCATAACTGAACTCTT+GGG 0.499183 7_3:-51721973 None:intergenic
AGCAACCTACCAATCACCTT+TGG 0.500347 7_3:+51725272 Msa1108670:CDS
ACAACTCCATGATCTCTTTG+TGG 0.503279 7_3:+51722047 Msa1108670:CDS
ACTGAAAGGAATGAAGGCTA+TGG 0.503485 7_3:+51723150 Msa1108670:CDS
TACTTTGTCCAATTCTGTCT+AGG 0.510514 7_3:-51725008 None:intergenic
CACACAAAGAACGCTTAAGA+TGG 0.520735 7_3:+51722019 Msa1108670:CDS
TCAAACAGCAAGAAAGCAAA+AGG 0.520861 7_3:+51725146 Msa1108670:CDS
AAAAGAAGTCCTTCAAATGC+AGG 0.534364 7_3:+51724432 Msa1108670:CDS
ATGGGTTCCACCCGCTCAGA+TGG 0.542220 7_3:+51721988 Msa1108670:CDS
AGGTATACTGAAAGGAATGA+AGG 0.543020 7_3:+51723144 Msa1108670:CDS
TGTGGCAGAGCCATCTGAGC+GGG 0.544996 7_3:-51721998 None:intergenic
TTCAGATTCCTCAGTAAGAG+AGG 0.547975 7_3:-51725094 None:intergenic
AAAGCTTGCAAGCCTTTGGT+TGG 0.548496 7_3:+51725054 Msa1108670:CDS
CTGAAAGGAATGAAGGCTAT+GGG 0.555733 7_3:+51723151 Msa1108670:CDS
GAGGCTGTAAATAGGCTTGG+GGG 0.562654 7_3:+51722069 Msa1108670:CDS
AATAAGAAACTAGGCACCAA+AGG 0.567599 7_3:-51725288 None:intergenic
GGCAGAGCCATCTGAGCGGG+TGG 0.574271 7_3:-51721995 None:intergenic
GGAGGCTGTAAATAGGCTTG+GGG 0.579180 7_3:+51722068 Msa1108670:CDS
AAAACCTATAATAAGAAACT+AGG 0.579659 7_3:-51725297 None:intergenic
TCTTAAGCGTTCTTTGTGTG+TGG 0.591577 7_3:-51722016 None:intergenic
GGTTTGGTTGCTGAATTCTG+AGG 0.596881 7_3:-51725220 None:intergenic
GGTGTTGCTTTACCAACCAA+AGG 0.599644 7_3:-51725066 None:intergenic
AGTCCTTCAAATGCAGGCTG+AGG 0.600265 7_3:+51724438 Msa1108670:CDS
ACCTCTTCCCTCTCTTACTG+AGG 0.608111 7_3:+51725086 Msa1108670:CDS
GATCCTAGTTCAAAACCTGT+AGG 0.608319 7_3:-51725189 None:intergenic
ATCCTTTAAAACACAATCCG+AGG 0.610019 7_3:+51725116 Msa1108670:CDS
AGGCACCAAAGGTGATTGGT+AGG 0.616341 7_3:-51725277 None:intergenic
ACGCATGAGTGATAAAGTTG+AGG 0.616870 7_3:+51724468 Msa1108670:CDS
TCCTCAGTAAGAGAGGGAAG+AGG 0.625723 7_3:-51725087 None:intergenic
TCAGATTCCTCAGTAAGAGA+GGG 0.627051 7_3:-51725093 None:intergenic
ACACCAAGAGGTATACTGAA+AGG 0.630195 7_3:+51723136 Msa1108670:CDS
AACCCATAACTGAACTCTTG+GGG 0.651760 7_3:-51721972 None:intergenic
ACTCCATGATCTCTTTGTGG+AGG 0.654213 7_3:+51722050 Msa1108670:CDS
TTGTCAGGGGCAACACCAAG+AGG 0.658933 7_3:+51723124 Msa1108670:intron
ATGGGTGAAGAACCTGCAAG+TGG 0.669007 7_3:-51723207 None:intergenic
AGGCTGAAAATTGAAGCACA+AGG 0.685954 7_3:+51724979 Msa1108670:CDS
AGGCTGTAAATAGGCTTGGG+GGG 0.689265 7_3:+51722070 Msa1108670:CDS
GTGTGGCAGAGCCATCTGAG+CGG 0.733060 7_3:-51721999 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAATTATTAGTTCAA+AGG + chr7_3:51722363-51722382 Msa1108670:intron 10.0%
!!! ATATAGTCTATATAATTTTT+AGG + chr7_3:51724800-51724819 Msa1108670:intron 10.0%
!!! AAACAATATAATTATTTCTA+TGG + chr7_3:51724860-51724879 Msa1108670:intron 10.0%
!!! ATTTTAGTAACCAATTTTTT+GGG + chr7_3:51721938-51721957 Msa1108670:intron 15.0%
!! ATTTGTAAATAAAAAAGAGA+AGG - chr7_3:51722948-51722967 None:intergenic 15.0%
!!! ATTTTATGACCAATATAAAT+GGG - chr7_3:51723228-51723247 None:intergenic 15.0%
!!! AATTTTATGACCAATATAAA+TGG - chr7_3:51723229-51723248 None:intergenic 15.0%
!! TTTGTAATTCATATAAATGT+GGG - chr7_3:51723695-51723714 None:intergenic 15.0%
!!! TTTTGTAATTCATATAAATG+TGG - chr7_3:51723696-51723715 None:intergenic 15.0%
!! AATATGCTAATTAGTAAAAA+TGG + chr7_3:51723714-51723733 Msa1108670:intron 15.0%
!! TCTCAAAAAAAAAAAAATCT+CGG + chr7_3:51723783-51723802 Msa1108670:intron 15.0%
!! AAATACTTTAATGTAGTTTA+TGG - chr7_3:51723898-51723917 None:intergenic 15.0%
!! NNNNNNNNNNTCAGAAATAC+AGG + chr7_3:51724130-51724149 Msa1108670:intron 15.0%
!! TTTAATCAAATACTATTACT+TGG - chr7_3:51724204-51724223 None:intergenic 15.0%
!!! TATGATATTTTAATTTGTCA+AGG + chr7_3:51724645-51724664 Msa1108670:intron 15.0%
!!! CAAAATTTTGTATTATTTGT+TGG + chr7_3:51724938-51724957 Msa1108670:intron 15.0%
!! AAAATTGGTTACTAAAATGA+AGG - chr7_3:51721936-51721955 None:intergenic 20.0%
!!! CATTTTAGTAACCAATTTTT+TGG + chr7_3:51721937-51721956 Msa1108670:intron 20.0%
!!! AAAGTATTATTAGAACTTAG+TGG - chr7_3:51722114-51722133 None:intergenic 20.0%
!!! GTCTAAGAAATTTTCATATT+TGG + chr7_3:51722539-51722558 Msa1108670:intron 20.0%
!!! AAGAAATTTTCATATTTGGA+AGG + chr7_3:51722543-51722562 Msa1108670:intron 20.0%
!! ACAAAAAATTACACTAATAG+AGG - chr7_3:51722627-51722646 None:intergenic 20.0%
!!! TTTAGCTTGAAAGTATAATA+TGG + chr7_3:51723018-51723037 Msa1108670:intron 20.0%
!! TAATATTTAGTTAGAGTTGT+AGG + chr7_3:51723041-51723060 Msa1108670:intron 20.0%
!! TATTTGAATATTGTTTGTCA+GGG + chr7_3:51723110-51723129 Msa1108670:intron 20.0%
!!! TGATGGATAAAATGTTATTT+TGG + chr7_3:51723485-51723504 Msa1108670:intron 20.0%
!! CTCAAAAAAAAAAAAATCTC+GGG + chr7_3:51723784-51723803 Msa1108670:intron 20.0%
!!! ACTTGTATTTCAATTTTCAA+GGG - chr7_3:51723979-51723998 None:intergenic 20.0%
!!! TACTTGTATTTCAATTTTCA+AGG - chr7_3:51723980-51723999 None:intergenic 20.0%
!! CTAAATAAAAAACTTACTTG+TGG - chr7_3:51724181-51724200 None:intergenic 20.0%
!!! TTGAGGTATTTTATAGTATT+TGG + chr7_3:51724485-51724504 Msa1108670:intron 20.0%
!!! AGAATTGTAGAAAGTTTTAA+AGG + chr7_3:51724826-51724845 Msa1108670:intron 20.0%
!!! GAATTGTAGAAAGTTTTAAA+GGG + chr7_3:51724827-51724846 Msa1108670:intron 20.0%
!!! ATTTTGTATTATTTGTTGGA+AGG + chr7_3:51724942-51724961 Msa1108670:intron 20.0%
!! TACATTTTGTCTTTAGTTGT+CGG - chr7_3:51721809-51721828 None:intergenic 25.0%
! ATCTACAAATTGCAATATAC+AGG - chr7_3:51722146-51722165 None:intergenic 25.0%
! AGTCGTGAATGAATAATTTA+CGG + chr7_3:51722238-51722257 Msa1108670:intron 25.0%
! TTCAAAGGAAATATGTCAAA+TGG + chr7_3:51722378-51722397 Msa1108670:intron 25.0%
! CTTATTTGAATTGAGATAGA+TGG + chr7_3:51722581-51722600 Msa1108670:intron 25.0%
! GATTGTTGAATAAGATTTGA+TGG + chr7_3:51722697-51722716 Msa1108670:intron 25.0%
!! TTTTTCTTAAGTCAAGTCAA+AGG - chr7_3:51722855-51722874 None:intergenic 25.0%
!! TTGATTGATAAACTTGTTTG+TGG + chr7_3:51722910-51722929 Msa1108670:intron 25.0%
! TGTAAATAAAAAAGAGAAGG+AGG - chr7_3:51722945-51722964 None:intergenic 25.0%
! ACTTTCAAGCTAAAAATCAA+CGG - chr7_3:51723012-51723031 None:intergenic 25.0%
! CTATTTGAATATTGTTTGTC+AGG + chr7_3:51723109-51723128 Msa1108670:intron 25.0%
! ATTTGAATATTGTTTGTCAG+GGG + chr7_3:51723111-51723130 Msa1108670:intron 25.0%
!! CAAGTATTTAGAGTAGTTTA+TGG + chr7_3:51723298-51723317 Msa1108670:intron 25.0%
! ACAACACATGAAAAATTTGT+AGG + chr7_3:51723431-51723450 Msa1108670:intron 25.0%
!! TGATCTTATACGATTTTTGA+TGG + chr7_3:51723468-51723487 Msa1108670:intron 25.0%
!! GGATTTGTAAAACTGTTTTA+GGG - chr7_3:51723613-51723632 None:intergenic 25.0%
!! TGGATTTGTAAAACTGTTTT+AGG - chr7_3:51723614-51723633 None:intergenic 25.0%
! AAAAAAAAAAAATCTCGGGT+TGG + chr7_3:51723788-51723807 Msa1108670:intron 25.0%
!!! CAATTTTCAAGGGAATTATT+AGG - chr7_3:51723969-51723988 None:intergenic 25.0%
! AATAAAAAACTTACTTGTGG+TGG - chr7_3:51724178-51724197 None:intergenic 25.0%
! GTTATAATTTCACTTGAAGT+TGG - chr7_3:51724238-51724257 None:intergenic 25.0%
! TGTTCCATGATTATTTATGA+AGG + chr7_3:51724259-51724278 Msa1108670:intron 25.0%
! TACGATATAGAACAGAAATT+TGG - chr7_3:51724322-51724341 None:intergenic 25.0%
! TTTATAGTATTTGGACCTAT+AGG + chr7_3:51724494-51724513 Msa1108670:intron 25.0%
! GTAAATGTAGAAGACATATT+TGG - chr7_3:51724704-51724723 None:intergenic 25.0%
! CCAATTCGGTTTTTAAATCA+TGG - chr7_3:51722202-51722221 None:intergenic 30.0%
CCATGATTTAAAAACCGAAT+TGG + chr7_3:51722199-51722218 Msa1108670:intron 30.0%
GATTTAAAAACCGAATTGGA+CGG + chr7_3:51722203-51722222 Msa1108670:intron 30.0%
TTATTTGAACAGTTTGATCG+TGG + chr7_3:51722266-51722285 Msa1108670:intron 30.0%
AAAATGGTTGAACTATGATC+CGG + chr7_3:51722311-51722330 Msa1108670:intron 30.0%
!! TACCAAAGGGTACTAAAAAA+GGG + chr7_3:51722411-51722430 Msa1108670:intron 30.0%
TACACTAATAGAGGTTTATG+TGG - chr7_3:51722618-51722637 None:intergenic 30.0%
!!! ATTTTAAAGTAGAGTTGTCG+AGG - chr7_3:51722735-51722754 None:intergenic 30.0%
TTTCATCGAGCAATCAAAAT+TGG + chr7_3:51722781-51722800 Msa1108670:intron 30.0%
! AAAACTAGCTCTTTGATACT+TGG + chr7_3:51722878-51722897 Msa1108670:intron 30.0%
TATTTAGTTAGAGTTGTAGG+AGG + chr7_3:51723044-51723063 Msa1108670:intron 30.0%
!! TATTTTAGACAACTTGTACG+TGG + chr7_3:51723508-51723527 Msa1108670:intron 30.0%
! ATTTTAGACAACTTGTACGT+GGG + chr7_3:51723509-51723528 Msa1108670:intron 30.0%
!!! GTTTTAGGGATATGAAAAAC+TGG - chr7_3:51723599-51723618 None:intergenic 30.0%
!! GTTTGGTTTGCCAAAAAATA+AGG - chr7_3:51723669-51723688 None:intergenic 30.0%
TTATTAGGCTTTGCTTAATG+TGG - chr7_3:51723954-51723973 None:intergenic 30.0%
AATGACTAATATGCTCATCT+TGG + chr7_3:51724011-51724030 Msa1108670:intron 30.0%
TCCATGATTATTTATGAAGG+AGG + chr7_3:51724262-51724281 Msa1108670:intron 30.0%
TCCTCCTTCATAAATAATCA+TGG - chr7_3:51724266-51724285 None:intergenic 30.0%
GATTATTTATGAAGGAGGAA+AGG + chr7_3:51724267-51724286 Msa1108670:intron 30.0%
CTTTAATGACTACATCCTAT+AGG - chr7_3:51724512-51724531 None:intergenic 30.0%
! TTACATGAGAGTATACTACC+TGG + chr7_3:51721777-51721796 Msa1108670:intron 35.0%
CTAATGAAGCCAATTTACCT+TGG + chr7_3:51721833-51721852 Msa1108670:intron 35.0%
AGACATAGAATTAACCATCG+TGG - chr7_3:51721868-51721887 None:intergenic 35.0%
TTATTCATTCACGACTCAAC+TGG - chr7_3:51722234-51722253 None:intergenic 35.0%
TGGTTATGTCCAGATTCAAA+CGG + chr7_3:51722286-51722305 Msa1108670:intron 35.0%
!! CCATTTTAACCGTTTGAATC+TGG - chr7_3:51722298-51722317 None:intergenic 35.0%
CCAGATTCAAACGGTTAAAA+TGG + chr7_3:51722295-51722314 Msa1108670:intron 35.0%
!! TTTTAGTACCCTTTGGTAGT+AGG - chr7_3:51722409-51722428 None:intergenic 35.0%
!! CTACCAAAGGGTACTAAAAA+AGG + chr7_3:51722410-51722429 Msa1108670:intron 35.0%
!!! AACCCTTTTTTAGTACCCTT+TGG - chr7_3:51722416-51722435 None:intergenic 35.0%
ATTCCTTTCAGTATACCTCT+TGG - chr7_3:51723142-51723161 None:intergenic 35.0%
AGGTATACTGAAAGGAATGA+AGG + chr7_3:51723144-51723163 Msa1108670:CDS 35.0%
GGTTCTTCACCCATTTATAT+TGG + chr7_3:51723216-51723235 Msa1108670:intron 35.0%
ATCCACAAAACAGTAAGTAC+TGG + chr7_3:51723368-51723387 Msa1108670:intron 35.0%
AGACAAAACAGAACAACACA+AGG + chr7_3:51723404-51723423 Msa1108670:intron 35.0%
CAAGAAAAACTCCAGTTGTA+CGG - chr7_3:51723640-51723659 None:intergenic 35.0%
!!! CTTGTCCTGTCCTTATTTTT+TGG + chr7_3:51723656-51723675 Msa1108670:intron 35.0%
GTTTGCCAAAAAATAAGGAC+AGG - chr7_3:51723664-51723683 None:intergenic 35.0%
AAAAGAAGTCCTTCAAATGC+AGG + chr7_3:51724432-51724451 Msa1108670:CDS 35.0%
GAACATGTATAACTTCCAAG+AGG + chr7_3:51724884-51724903 Msa1108670:intron 35.0%
TACTTTGTCCAATTCTGTCT+AGG - chr7_3:51725011-51725030 None:intergenic 35.0%
!! ATCCTTTAAAACACAATCCG+AGG + chr7_3:51725116-51725135 Msa1108670:CDS 35.0%
!! TTCCTCGGATTGTGTTTTAA+AGG - chr7_3:51725121-51725140 None:intergenic 35.0%
TCAAACAGCAAGAAAGCAAA+AGG + chr7_3:51725146-51725165 Msa1108670:CDS 35.0%
! GATGAGAATGTTTTTCCTAC+AGG + chr7_3:51725174-51725193 Msa1108670:CDS 35.0%
!!! TTTCCTACAGGTTTTGAACT+AGG + chr7_3:51725186-51725205 Msa1108670:CDS 35.0%
AATAAGAAACTAGGCACCAA+AGG - chr7_3:51725291-51725310 None:intergenic 35.0%
TTTAGTTGTCGGAAGAAACC+AGG - chr7_3:51721798-51721817 None:intergenic 40.0%
CGATGTTCACCAAGGTAAAT+TGG - chr7_3:51721845-51721864 None:intergenic 40.0%
CTGAAAGAGGCCCAAAAAAT+TGG - chr7_3:51721951-51721970 None:intergenic 40.0%
AACCCATAACTGAACTCTTG+GGG - chr7_3:51721975-51721994 None:intergenic 40.0%
GAACCCATAACTGAACTCTT+GGG - chr7_3:51721976-51721995 None:intergenic 40.0%
TCTTAAGCGTTCTTTGTGTG+TGG - chr7_3:51722019-51722038 None:intergenic 40.0%
CACACAAAGAACGCTTAAGA+TGG + chr7_3:51722019-51722038 Msa1108670:CDS 40.0%
ACAACTCCATGATCTCTTTG+TGG + chr7_3:51722047-51722066 Msa1108670:CDS 40.0%
TCTTTGTGGAGGCTGTAAAT+AGG + chr7_3:51722061-51722080 Msa1108670:CDS 40.0%
AGTGGCAAAAACTCACTATC+TGG - chr7_3:51722096-51722115 None:intergenic 40.0%
ATGGTCAATCCTACTACCAA+AGG + chr7_3:51722397-51722416 Msa1108670:intron 40.0%
TGGTCAATCCTACTACCAAA+GGG + chr7_3:51722398-51722417 Msa1108670:intron 40.0%
! ACACCAAGAGGTATACTGAA+AGG + chr7_3:51723136-51723155 Msa1108670:CDS 40.0%
ACTGAAAGGAATGAAGGCTA+TGG + chr7_3:51723150-51723169 Msa1108670:CDS 40.0%
CTGAAAGGAATGAAGGCTAT+GGG + chr7_3:51723151-51723170 Msa1108670:CDS 40.0%
! GTCCAGTACTTACTGTTTTG+TGG - chr7_3:51723373-51723392 None:intergenic 40.0%
CAAAAAGTTGTGTGGTGGTT+TGG + chr7_3:51723533-51723552 Msa1108670:intron 40.0%
CATATAAATGTGGGTGCGTT+TGG - chr7_3:51723686-51723705 None:intergenic 40.0%
TAGGCTTTGCTTAATGTGGA+TGG - chr7_3:51723950-51723969 None:intergenic 40.0%
!! GGTGGATTCTGGAATCAATT+TGG - chr7_3:51724160-51724179 None:intergenic 40.0%
!! AACTTACTTGTGGTGGATTC+TGG - chr7_3:51724171-51724190 None:intergenic 40.0%
ACGCATGAGTGATAAAGTTG+AGG + chr7_3:51724468-51724487 Msa1108670:CDS 40.0%
!!! CCATGTCTGTTTTTTCCTCT+TGG - chr7_3:51724902-51724921 None:intergenic 40.0%
CCAAGAGGAAAAAACAGACA+TGG + chr7_3:51724899-51724918 Msa1108670:intron 40.0%
GGAAGGTTCAAAAAAGCTTG+AGG + chr7_3:51724959-51724978 Msa1108670:intron 40.0%
AGGCTGAAAATTGAAGCACA+AGG + chr7_3:51724979-51724998 Msa1108670:CDS 40.0%
!! GGAAAGTACCTAGACAGAAT+TGG + chr7_3:51725000-51725019 Msa1108670:CDS 40.0%
AAGAAAAGCTTGCAAGCCTT+TGG + chr7_3:51725050-51725069 Msa1108670:CDS 40.0%
TCAGATTCCTCAGTAAGAGA+GGG - chr7_3:51725096-51725115 None:intergenic 40.0%
TTCAGATTCCTCAGTAAGAG+AGG - chr7_3:51725097-51725116 None:intergenic 40.0%
! TGCTGTTTGATGTTCTTCCT+CGG - chr7_3:51725136-51725155 None:intergenic 40.0%
GATCCTAGTTCAAAACCTGT+AGG - chr7_3:51725192-51725211 None:intergenic 40.0%
AGACCCCAAGAGTTCAGTTA+TGG + chr7_3:51721969-51721988 Msa1108670:intron 45.0%
GACCCCAAGAGTTCAGTTAT+GGG + chr7_3:51721970-51721989 Msa1108670:intron 45.0%
GGAACCCATAACTGAACTCT+TGG - chr7_3:51721977-51721996 None:intergenic 45.0%
ACTCCATGATCTCTTTGTGG+AGG + chr7_3:51722050-51722069 Msa1108670:CDS 45.0%
TGGAGGCTGTAAATAGGCTT+GGG + chr7_3:51722067-51722086 Msa1108670:CDS 45.0%
ACTGGTTGAACCGTCCAATT+CGG - chr7_3:51722216-51722235 None:intergenic 45.0%
CTATGATCCGGATGTCTTGT+AGG + chr7_3:51722323-51722342 Msa1108670:intron 45.0%
CATTGAGCCTACAAGACATC+CGG - chr7_3:51722333-51722352 None:intergenic 45.0%
TGTCTTGTAGGCTCAATGTC+TGG + chr7_3:51722335-51722354 Msa1108670:intron 45.0%
ACGTGGGACAAAAAGTTGTG+TGG + chr7_3:51723525-51723544 Msa1108670:intron 45.0%
TGGGACAAAAAGTTGTGTGG+TGG + chr7_3:51723528-51723547 Msa1108670:intron 45.0%
CAAATCCAACACCGTACAAC+TGG + chr7_3:51723626-51723645 Msa1108670:intron 45.0%
AAACTCCAGTTGTACGGTGT+TGG - chr7_3:51723634-51723653 None:intergenic 45.0%
AAAGCTTGCAAGCCTTTGGT+TGG + chr7_3:51725054-51725073 Msa1108670:CDS 45.0%
!! GGTGTTGCTTTACCAACCAA+AGG - chr7_3:51725069-51725088 None:intergenic 45.0%
!! GTTGCTGAATTCTGAGGTAG+TGG - chr7_3:51725217-51725236 None:intergenic 45.0%
! GGTTTGGTTGCTGAATTCTG+AGG - chr7_3:51725223-51725242 None:intergenic 45.0%
CAGAATTCAGCAACCAAACC+TGG + chr7_3:51725223-51725242 Msa1108670:CDS 45.0%
ACCAAACCTGGAACCTTTCT+TGG + chr7_3:51725235-51725254 Msa1108670:CDS 45.0%
TCCAAGAAAGGTTCCAGGTT+TGG - chr7_3:51725239-51725258 None:intergenic 45.0%
AGCAACCTACCAATCACCTT+TGG + chr7_3:51725272-51725291 Msa1108670:CDS 45.0%
AACTAGGCACCAAAGGTGAT+TGG - chr7_3:51725284-51725303 None:intergenic 45.0%
GAACTCTTGGGGTCTGAAAG+AGG - chr7_3:51721964-51721983 None:intergenic 50.0%
CAGCCTCCACAAAGAGATCA+TGG - chr7_3:51722056-51722075 None:intergenic 50.0%
GTGGAGGCTGTAAATAGGCT+TGG + chr7_3:51722066-51722085 Msa1108670:CDS 50.0%
GGAGGCTGTAAATAGGCTTG+GGG + chr7_3:51722068-51722087 Msa1108670:CDS 50.0%
GAGGCTGTAAATAGGCTTGG+GGG + chr7_3:51722069-51722088 Msa1108670:CDS 50.0%
AGGCTGTAAATAGGCTTGGG+GGG + chr7_3:51722070-51722089 Msa1108670:CDS 50.0%
ACACGTCAAAAGCCACTTGC+AGG + chr7_3:51723195-51723214 Msa1108670:CDS 50.0%
ATGGGTGAAGAACCTGCAAG+TGG - chr7_3:51723210-51723229 None:intergenic 50.0%
!! AGTTGTGTGGTGGTTTGGTG+AGG + chr7_3:51723538-51723557 Msa1108670:intron 50.0%
!! GTTGTGTGGTGGTTTGGTGA+GGG + chr7_3:51723539-51723558 Msa1108670:intron 50.0%
AGTCCTTCAAATGCAGGCTG+AGG + chr7_3:51724438-51724457 Msa1108670:CDS 50.0%
ACCTCTTCCCTCTCTTACTG+AGG + chr7_3:51725086-51725105 Msa1108670:CDS 50.0%
TCCTCAGTAAGAGAGGGAAG+AGG - chr7_3:51725090-51725109 None:intergenic 50.0%
CTGACTCCAAGAAAGGTTCC+AGG - chr7_3:51725244-51725263 None:intergenic 50.0%
GAACCTTTCTTGGAGTCAGC+TGG + chr7_3:51725245-51725264 Msa1108670:CDS 50.0%
AGGCACCAAAGGTGATTGGT+AGG - chr7_3:51725280-51725299 None:intergenic 50.0%
CATCGTGGCGATGTTCACCA+AGG - chr7_3:51721853-51721872 None:intergenic 55.0%
CTTGGTGAACATCGCCACGA+TGG + chr7_3:51721851-51721870 Msa1108670:intron 55.0%
TTGTCAGGGGCAACACCAAG+AGG + chr7_3:51723124-51723143 Msa1108670:intron 55.0%
GCACCTCAGCCTGCATTTGA+AGG - chr7_3:51724444-51724463 None:intergenic 55.0%
! CAGCCAGCTGACTCCAAGAA+AGG - chr7_3:51725251-51725270 None:intergenic 55.0%
ATGGGTTCCACCCGCTCAGA+TGG + chr7_3:51721988-51722007 Msa1108670:CDS 60.0%
TGTGGCAGAGCCATCTGAGC+GGG - chr7_3:51722001-51722020 None:intergenic 60.0%
GTGTGGCAGAGCCATCTGAG+CGG - chr7_3:51722002-51722021 None:intergenic 60.0%
GGCAGAGCCATCTGAGCGGG+TGG - chr7_3:51721998-51722017 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 51721765 51725311 51721765 ID=Msa1108670;Name=Msa1108670
chr7_3 mRNA 51721765 51725311 51721765 ID=Msa1108670-mRNA-1;Parent=Msa1108670;Name=Msa1108670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=25|0|0|0.83|0.4|0.33|6|0|222
chr7_3 exon 51721765 51721772 51721765 ID=Msa1108670-mRNA-1:exon:10702;Parent=Msa1108670-mRNA-1
chr7_3 exon 51721971 51722099 51721971 ID=Msa1108670-mRNA-1:exon:10703;Parent=Msa1108670-mRNA-1
chr7_3 exon 51723131 51723216 51723131 ID=Msa1108670-mRNA-1:exon:10704;Parent=Msa1108670-mRNA-1
chr7_3 exon 51724289 51724338 51724289 ID=Msa1108670-mRNA-1:exon:10705;Parent=Msa1108670-mRNA-1
chr7_3 exon 51724420 51724489 51724420 ID=Msa1108670-mRNA-1:exon:10706;Parent=Msa1108670-mRNA-1
chr7_3 exon 51724964 51725311 51724964 ID=Msa1108670-mRNA-1:exon:10707;Parent=Msa1108670-mRNA-1
chr7_3 five_prime_UTR 51721765 51721772 51721765 ID=Msa1108670-mRNA-1:five_prime_utr;Parent=Msa1108670-mRNA-1
chr7_3 five_prime_UTR 51721971 51721987 51721971 ID=Msa1108670-mRNA-1:five_prime_utr;Parent=Msa1108670-mRNA-1
chr7_3 CDS 51721988 51722099 51721988 ID=Msa1108670-mRNA-1:cds;Parent=Msa1108670-mRNA-1
chr7_3 CDS 51723131 51723216 51723131 ID=Msa1108670-mRNA-1:cds;Parent=Msa1108670-mRNA-1
chr7_3 CDS 51724289 51724338 51724289 ID=Msa1108670-mRNA-1:cds;Parent=Msa1108670-mRNA-1
chr7_3 CDS 51724420 51724489 51724420 ID=Msa1108670-mRNA-1:cds;Parent=Msa1108670-mRNA-1
chr7_3 CDS 51724964 51725311 51724964 ID=Msa1108670-mRNA-1:cds;Parent=Msa1108670-mRNA-1
Gene Sequence

>Msa1108670

ATGGGTTCCACCCGCTCAGATGGCTCTGCCACACACAAAGAACGCTTAAGATGGACACAACAACTCCATGATCTCTTTGTGGAGGCTGTAAATAGGCTTGGGGGGCCAGATAGGGCAACACCAAGAGGTATACTGAAAGGAATGAAGGCTATGGGAGTTTCAGAATTGAAAATATTACACGTCAAAAGCCACTTGCAGGTTGAGAAGAGAAGCATATCAGATATGCTGCCAAATTTCTGTTCTATATCTGCTCTTCAGCTAAAAGAAGTCCTTCAAATGCAGGCTGAGGTGCAAAAACGCATGAGTGATAAAGTTGAGGTTCAAAAAAGCTTGAGGCTGAAAATTGAAGCACAAGGAAAGTACCTAGACAGAATTGGACAAAGTAATCAAATCAGAACTATTACAAGAAAAGCTTGCAAGCCTTTGGTTGGTAAAGCAACACCTCTTCCCTCTCTTACTGAGGAATCTGAATCCTTTAAAACACAATCCGAGGAAGAACATCAAACAGCAAGAAAGCAAAAGGTCACAGATGAGAATGTTTTTCCTACAGGTTTTGAACTAGGATCATCCACTACCTCAGAATTCAGCAACCAAACCTGGAACCTTTCTTGGAGTCAGCTGGCTGAAGCAACCTACCAATCACCTTTGGTGCCTAGTTTCTTATTA

Protein sequence

>Msa1108670

MGSTRSDGSATHKERLRWTQQLHDLFVEAVNRLGGPDRATPRGILKGMKAMGVSELKILHVKSHLQVEKRSISDMLPNFCSISALQLKEVLQMQAEVQKRMSDKVEVQKSLRLKIEAQGKYLDRIGQSNQIRTITRKACKPLVGKATPLPSLTEESESFKTQSEEEHQTARKQKVTDENVFPTGFELGSSTTSEFSNQTWNLSWSQLAEATYQSPLVPSFLL