Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1108670 | RHN46467.1 | 87.342 | 237 | 15 | 1 | 1 | 222 | 1 | 237 | 2.16e-148 | 422 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1108670 | sp|Q9SJW0|PHL7_ARATH | 43.114 | 167 | 73 | 4 | 9 | 156 | 11 | 174 | 2.89e-35 | 129 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1108670 | A0A396H681 | 87.342 | 237 | 15 | 1 | 1 | 222 | 1 | 237 | 1.03e-148 | 422 |
Gene ID | Type | Classification |
---|---|---|
Msa1108670 | TF | GARP-G2-like |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1108670 | MtrunA17_Chr7g0242521 | 87.342 | 237 | 15 | 1 | 1 | 222 | 1 | 237 | 1.99e-152 | 422 |
Msa1108670 | MtrunA17_Chr2g0291021 | 44.586 | 157 | 63 | 4 | 13 | 150 | 49 | 200 | 3.72e-35 | 127 |
Msa1108670 | MtrunA17_Chr7g0254981 | 48.485 | 132 | 46 | 2 | 13 | 125 | 50 | 178 | 3.55e-34 | 123 |
Msa1108670 | MtrunA17_Chr7g0261911 | 47.101 | 138 | 54 | 4 | 1 | 122 | 250 | 384 | 6.09e-28 | 110 |
Msa1108670 | MtrunA17_Chr1g0175091 | 43.478 | 138 | 56 | 4 | 2 | 122 | 246 | 378 | 1.63e-27 | 108 |
Msa1108670 | MtrunA17_Chr2g0310011 | 45.038 | 131 | 50 | 3 | 13 | 124 | 35 | 162 | 5.81e-26 | 103 |
Msa1108670 | MtrunA17_Chr1g0190301 | 38.961 | 154 | 72 | 5 | 13 | 150 | 175 | 322 | 5.30e-25 | 100 |
Msa1108670 | MtrunA17_Chr7g0258551 | 40.625 | 128 | 58 | 2 | 13 | 125 | 212 | 336 | 1.17e-24 | 100 |
Msa1108670 | MtrunA17_Chr8g0356501 | 35.450 | 189 | 86 | 5 | 13 | 182 | 37 | 208 | 1.20e-24 | 99.4 |
Msa1108670 | MtrunA17_Chr2g0321461 | 38.255 | 149 | 53 | 3 | 13 | 125 | 45 | 190 | 9.33e-24 | 97.4 |
Msa1108670 | MtrunA17_Chr5g0409731 | 39.716 | 141 | 54 | 3 | 13 | 125 | 25 | 162 | 1.02e-23 | 96.3 |
Msa1108670 | MtrunA17_Chr4g0042451 | 35.417 | 144 | 63 | 3 | 9 | 125 | 13 | 153 | 1.98e-22 | 93.2 |
Msa1108670 | MtrunA17_Chr6g0461641 | 38.926 | 149 | 56 | 5 | 9 | 125 | 38 | 183 | 9.15e-22 | 92.0 |
Msa1108670 | MtrunA17_Chr7g0274471 | 38.760 | 129 | 60 | 3 | 13 | 125 | 218 | 343 | 2.34e-21 | 91.3 |
Msa1108670 | MtrunA17_Chr5g0417521 | 34.483 | 145 | 64 | 3 | 9 | 125 | 11 | 152 | 9.77e-21 | 89.0 |
Msa1108670 | MtrunA17_Chr2g0290991 | 31.111 | 180 | 83 | 4 | 9 | 160 | 35 | 201 | 8.92e-19 | 82.8 |
Msa1108670 | MtrunA17_Chr1g0175071 | 39.416 | 137 | 63 | 3 | 3 | 122 | 165 | 298 | 2.02e-18 | 82.0 |
Msa1108670 | MtrunA17_Chr1g0197171 | 32.692 | 156 | 67 | 4 | 13 | 143 | 44 | 186 | 1.02e-15 | 74.3 |
Msa1108670 | MtrunA17_Chr7g0258531 | 33.813 | 139 | 72 | 2 | 1 | 122 | 201 | 336 | 2.26e-14 | 70.9 |
Msa1108670 | MtrunA17_Chr2g0288601 | 62.264 | 53 | 17 | 1 | 15 | 67 | 73 | 122 | 4.92e-13 | 63.9 |
Msa1108670 | MtrunA17_Chr3g0095611 | 46.479 | 71 | 32 | 2 | 2 | 69 | 5 | 72 | 8.18e-12 | 62.4 |
Msa1108670 | MtrunA17_Chr1g0175081 | 50.000 | 58 | 26 | 1 | 9 | 66 | 18 | 72 | 2.00e-11 | 58.9 |
Msa1108670 | MtrunA17_Chr2g0320231 | 56.364 | 55 | 21 | 1 | 15 | 69 | 99 | 150 | 3.70e-11 | 61.6 |
Msa1108670 | MtrunA17_Chr8g0379121 | 56.604 | 53 | 20 | 1 | 15 | 67 | 113 | 162 | 6.68e-11 | 61.2 |
Msa1108670 | MtrunA17_Chr6g0479431 | 50.909 | 55 | 24 | 1 | 15 | 69 | 204 | 255 | 7.44e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1108670 | AT2G01060.1 | 43.114 | 167 | 73 | 4 | 9 | 156 | 11 | 174 | 2.94e-36 | 129 |
Msa1108670 | AT5G06800.1 | 44.186 | 129 | 54 | 2 | 9 | 122 | 188 | 313 | 4.15e-28 | 109 |
Msa1108670 | AT5G06800.2 | 40.845 | 142 | 61 | 2 | 9 | 130 | 188 | 326 | 2.18e-27 | 107 |
Msa1108670 | AT1G79430.2 | 39.474 | 152 | 61 | 3 | 13 | 145 | 34 | 173 | 4.21e-27 | 106 |
Msa1108670 | AT4G13640.1 | 37.500 | 168 | 65 | 4 | 13 | 152 | 37 | 192 | 6.22e-27 | 105 |
Msa1108670 | AT3G24120.1 | 39.286 | 168 | 62 | 5 | 13 | 152 | 41 | 196 | 2.35e-26 | 103 |
Msa1108670 | AT4G28610.1 | 46.565 | 131 | 50 | 3 | 9 | 122 | 221 | 348 | 2.58e-26 | 105 |
Msa1108670 | AT1G69580.1 | 40.397 | 151 | 52 | 4 | 9 | 125 | 30 | 176 | 3.01e-25 | 101 |
Msa1108670 | AT5G29000.1 | 41.844 | 141 | 58 | 4 | 2 | 122 | 177 | 313 | 4.02e-25 | 101 |
Msa1108670 | AT5G29000.3 | 41.844 | 141 | 58 | 4 | 2 | 122 | 177 | 313 | 4.02e-25 | 101 |
Msa1108670 | AT1G69580.2 | 40.132 | 152 | 52 | 4 | 9 | 125 | 30 | 177 | 4.56e-25 | 100 |
Msa1108670 | AT5G29000.2 | 41.844 | 141 | 58 | 4 | 2 | 122 | 220 | 356 | 5.64e-25 | 101 |
Msa1108670 | AT4G13640.2 | 36.842 | 171 | 65 | 5 | 13 | 152 | 37 | 195 | 6.36e-25 | 99.8 |
Msa1108670 | AT3G04450.4 | 34.118 | 170 | 85 | 4 | 9 | 154 | 194 | 360 | 6.48e-25 | 101 |
Msa1108670 | AT3G04450.2 | 34.118 | 170 | 85 | 4 | 9 | 154 | 194 | 360 | 6.48e-25 | 101 |
Msa1108670 | AT3G04450.1 | 34.118 | 170 | 85 | 4 | 9 | 154 | 234 | 400 | 7.09e-25 | 101 |
Msa1108670 | AT3G24120.2 | 38.596 | 171 | 62 | 6 | 13 | 152 | 41 | 199 | 2.57e-24 | 98.2 |
Msa1108670 | AT5G18240.1 | 42.361 | 144 | 49 | 5 | 13 | 125 | 45 | 185 | 7.71e-24 | 98.2 |
Msa1108670 | AT5G18240.4 | 42.361 | 144 | 49 | 5 | 13 | 125 | 45 | 185 | 7.71e-24 | 98.2 |
Msa1108670 | AT3G04030.3 | 40.541 | 148 | 54 | 4 | 9 | 125 | 41 | 185 | 9.49e-24 | 98.2 |
Msa1108670 | AT3G13040.3 | 40.136 | 147 | 63 | 4 | 1 | 125 | 228 | 371 | 1.94e-21 | 92.0 |
Msa1108670 | AT3G13040.1 | 40.136 | 147 | 63 | 4 | 1 | 125 | 228 | 371 | 1.94e-21 | 92.0 |
Msa1108670 | AT3G13040.2 | 40.136 | 147 | 63 | 4 | 1 | 125 | 228 | 371 | 1.94e-21 | 92.0 |
Msa1108670 | AT3G04030.2 | 39.865 | 148 | 54 | 5 | 9 | 125 | 41 | 184 | 3.06e-21 | 90.9 |
Msa1108670 | AT5G18240.5 | 40.972 | 144 | 49 | 6 | 13 | 125 | 45 | 183 | 9.98e-21 | 89.7 |
Msa1108670 | AT2G20400.1 | 39.683 | 126 | 57 | 2 | 13 | 122 | 231 | 353 | 1.64e-20 | 89.0 |
Msa1108670 | AT3G12730.1 | 35.556 | 135 | 60 | 3 | 13 | 123 | 23 | 154 | 1.34e-19 | 84.3 |
Msa1108670 | AT2G20400.2 | 37.795 | 127 | 59 | 2 | 13 | 122 | 231 | 354 | 1.63e-19 | 86.3 |
Msa1108670 | AT3G04030.1 | 38.514 | 148 | 51 | 5 | 9 | 125 | 41 | 179 | 2.14e-19 | 85.9 |
Msa1108670 | AT5G18240.2 | 40.278 | 144 | 46 | 6 | 13 | 125 | 45 | 179 | 2.14e-19 | 85.9 |
Msa1108670 | AT5G18240.3 | 40.278 | 144 | 46 | 6 | 13 | 125 | 45 | 179 | 2.14e-19 | 85.9 |
Msa1108670 | AT5G45580.1 | 35.417 | 144 | 56 | 3 | 13 | 122 | 7 | 147 | 5.09e-19 | 83.2 |
Msa1108670 | AT5G45580.2 | 35.417 | 144 | 56 | 3 | 13 | 122 | 23 | 163 | 6.48e-19 | 83.2 |
Msa1108670 | AT2G01060.2 | 38.400 | 125 | 58 | 3 | 51 | 156 | 1 | 125 | 1.71e-17 | 78.6 |
Msa1108670 | AT5G06800.3 | 55.072 | 69 | 26 | 2 | 9 | 77 | 188 | 251 | 9.05e-17 | 77.4 |
Msa1108670 | AT5G29000.4 | 55.385 | 65 | 26 | 1 | 2 | 66 | 220 | 281 | 2.31e-15 | 73.9 |
Msa1108670 | AT3G04450.3 | 55.172 | 58 | 23 | 1 | 9 | 66 | 234 | 288 | 1.09e-14 | 72.0 |
Msa1108670 | AT2G40260.1 | 55.000 | 60 | 24 | 1 | 15 | 74 | 84 | 140 | 3.24e-13 | 68.2 |
Msa1108670 | AT2G06020.1 | 51.852 | 54 | 23 | 1 | 13 | 66 | 86 | 136 | 3.85e-13 | 67.4 |
Msa1108670 | AT1G79430.1 | 33.333 | 117 | 50 | 2 | 48 | 145 | 1 | 108 | 7.27e-13 | 66.6 |
Msa1108670 | AT2G42660.1 | 60.000 | 55 | 19 | 1 | 15 | 69 | 52 | 103 | 8.89e-13 | 65.9 |
Find 60 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCAAACCTGGAACCTTTCT+TGG | 0.254138 | 7_3:+51725235 | Msa1108670:CDS |
TACGATATAGAACAGAAATT+TGG | 0.266828 | 7_3:-51724319 | None:intergenic |
TGGAGGCTGTAAATAGGCTT+GGG | 0.332347 | 7_3:+51722067 | Msa1108670:CDS |
TCTTTGTGGAGGCTGTAAAT+AGG | 0.333114 | 7_3:+51722061 | Msa1108670:CDS |
TCCAAGAAAGGTTCCAGGTT+TGG | 0.364366 | 7_3:-51725236 | None:intergenic |
GCACCTCAGCCTGCATTTGA+AGG | 0.377972 | 7_3:-51724441 | None:intergenic |
GACCCCAAGAGTTCAGTTAT+GGG | 0.387702 | 7_3:+51721970 | Msa1108670:intron |
ACACGTCAAAAGCCACTTGC+AGG | 0.391889 | 7_3:+51723195 | Msa1108670:CDS |
AGACCCCAAGAGTTCAGTTA+TGG | 0.391899 | 7_3:+51721969 | Msa1108670:intron |
GTGGAGGCTGTAAATAGGCT+TGG | 0.397815 | 7_3:+51722066 | Msa1108670:CDS |
AAGAAAAGCTTGCAAGCCTT+TGG | 0.401704 | 7_3:+51725050 | Msa1108670:CDS |
CTGACTCCAAGAAAGGTTCC+AGG | 0.408019 | 7_3:-51725241 | None:intergenic |
GGAAAGTACCTAGACAGAAT+TGG | 0.410201 | 7_3:+51725000 | Msa1108670:CDS |
TGCTGTTTGATGTTCTTCCT+CGG | 0.424128 | 7_3:-51725133 | None:intergenic |
GAACCTTTCTTGGAGTCAGC+TGG | 0.440714 | 7_3:+51725245 | Msa1108670:CDS |
GGAACCCATAACTGAACTCT+TGG | 0.448606 | 7_3:-51721974 | None:intergenic |
ATTCCTTTCAGTATACCTCT+TGG | 0.449845 | 7_3:-51723139 | None:intergenic |
CAGAATTCAGCAACCAAACC+TGG | 0.457761 | 7_3:+51725223 | Msa1108670:CDS |
GTTGCTGAATTCTGAGGTAG+TGG | 0.463218 | 7_3:-51725214 | None:intergenic |
AACTAGGCACCAAAGGTGAT+TGG | 0.478600 | 7_3:-51725281 | None:intergenic |
CAGCCTCCACAAAGAGATCA+TGG | 0.480797 | 7_3:-51722053 | None:intergenic |
CAGCCAGCTGACTCCAAGAA+AGG | 0.496169 | 7_3:-51725248 | None:intergenic |
GAACCCATAACTGAACTCTT+GGG | 0.499183 | 7_3:-51721973 | None:intergenic |
AGCAACCTACCAATCACCTT+TGG | 0.500347 | 7_3:+51725272 | Msa1108670:CDS |
ACAACTCCATGATCTCTTTG+TGG | 0.503279 | 7_3:+51722047 | Msa1108670:CDS |
ACTGAAAGGAATGAAGGCTA+TGG | 0.503485 | 7_3:+51723150 | Msa1108670:CDS |
TACTTTGTCCAATTCTGTCT+AGG | 0.510514 | 7_3:-51725008 | None:intergenic |
CACACAAAGAACGCTTAAGA+TGG | 0.520735 | 7_3:+51722019 | Msa1108670:CDS |
TCAAACAGCAAGAAAGCAAA+AGG | 0.520861 | 7_3:+51725146 | Msa1108670:CDS |
AAAAGAAGTCCTTCAAATGC+AGG | 0.534364 | 7_3:+51724432 | Msa1108670:CDS |
ATGGGTTCCACCCGCTCAGA+TGG | 0.542220 | 7_3:+51721988 | Msa1108670:CDS |
AGGTATACTGAAAGGAATGA+AGG | 0.543020 | 7_3:+51723144 | Msa1108670:CDS |
TGTGGCAGAGCCATCTGAGC+GGG | 0.544996 | 7_3:-51721998 | None:intergenic |
TTCAGATTCCTCAGTAAGAG+AGG | 0.547975 | 7_3:-51725094 | None:intergenic |
AAAGCTTGCAAGCCTTTGGT+TGG | 0.548496 | 7_3:+51725054 | Msa1108670:CDS |
CTGAAAGGAATGAAGGCTAT+GGG | 0.555733 | 7_3:+51723151 | Msa1108670:CDS |
GAGGCTGTAAATAGGCTTGG+GGG | 0.562654 | 7_3:+51722069 | Msa1108670:CDS |
AATAAGAAACTAGGCACCAA+AGG | 0.567599 | 7_3:-51725288 | None:intergenic |
GGCAGAGCCATCTGAGCGGG+TGG | 0.574271 | 7_3:-51721995 | None:intergenic |
GGAGGCTGTAAATAGGCTTG+GGG | 0.579180 | 7_3:+51722068 | Msa1108670:CDS |
AAAACCTATAATAAGAAACT+AGG | 0.579659 | 7_3:-51725297 | None:intergenic |
TCTTAAGCGTTCTTTGTGTG+TGG | 0.591577 | 7_3:-51722016 | None:intergenic |
GGTTTGGTTGCTGAATTCTG+AGG | 0.596881 | 7_3:-51725220 | None:intergenic |
GGTGTTGCTTTACCAACCAA+AGG | 0.599644 | 7_3:-51725066 | None:intergenic |
AGTCCTTCAAATGCAGGCTG+AGG | 0.600265 | 7_3:+51724438 | Msa1108670:CDS |
ACCTCTTCCCTCTCTTACTG+AGG | 0.608111 | 7_3:+51725086 | Msa1108670:CDS |
GATCCTAGTTCAAAACCTGT+AGG | 0.608319 | 7_3:-51725189 | None:intergenic |
ATCCTTTAAAACACAATCCG+AGG | 0.610019 | 7_3:+51725116 | Msa1108670:CDS |
AGGCACCAAAGGTGATTGGT+AGG | 0.616341 | 7_3:-51725277 | None:intergenic |
ACGCATGAGTGATAAAGTTG+AGG | 0.616870 | 7_3:+51724468 | Msa1108670:CDS |
TCCTCAGTAAGAGAGGGAAG+AGG | 0.625723 | 7_3:-51725087 | None:intergenic |
TCAGATTCCTCAGTAAGAGA+GGG | 0.627051 | 7_3:-51725093 | None:intergenic |
ACACCAAGAGGTATACTGAA+AGG | 0.630195 | 7_3:+51723136 | Msa1108670:CDS |
AACCCATAACTGAACTCTTG+GGG | 0.651760 | 7_3:-51721972 | None:intergenic |
ACTCCATGATCTCTTTGTGG+AGG | 0.654213 | 7_3:+51722050 | Msa1108670:CDS |
TTGTCAGGGGCAACACCAAG+AGG | 0.658933 | 7_3:+51723124 | Msa1108670:intron |
ATGGGTGAAGAACCTGCAAG+TGG | 0.669007 | 7_3:-51723207 | None:intergenic |
AGGCTGAAAATTGAAGCACA+AGG | 0.685954 | 7_3:+51724979 | Msa1108670:CDS |
AGGCTGTAAATAGGCTTGGG+GGG | 0.689265 | 7_3:+51722070 | Msa1108670:CDS |
GTGTGGCAGAGCCATCTGAG+CGG | 0.733060 | 7_3:-51721999 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTAAATTATTAGTTCAA+AGG | + | chr7_3:51722363-51722382 | Msa1108670:intron | 10.0% |
!!! | ATATAGTCTATATAATTTTT+AGG | + | chr7_3:51724800-51724819 | Msa1108670:intron | 10.0% |
!!! | AAACAATATAATTATTTCTA+TGG | + | chr7_3:51724860-51724879 | Msa1108670:intron | 10.0% |
!!! | ATTTTAGTAACCAATTTTTT+GGG | + | chr7_3:51721938-51721957 | Msa1108670:intron | 15.0% |
!! | ATTTGTAAATAAAAAAGAGA+AGG | - | chr7_3:51722948-51722967 | None:intergenic | 15.0% |
!!! | ATTTTATGACCAATATAAAT+GGG | - | chr7_3:51723228-51723247 | None:intergenic | 15.0% |
!!! | AATTTTATGACCAATATAAA+TGG | - | chr7_3:51723229-51723248 | None:intergenic | 15.0% |
!! | TTTGTAATTCATATAAATGT+GGG | - | chr7_3:51723695-51723714 | None:intergenic | 15.0% |
!!! | TTTTGTAATTCATATAAATG+TGG | - | chr7_3:51723696-51723715 | None:intergenic | 15.0% |
!! | AATATGCTAATTAGTAAAAA+TGG | + | chr7_3:51723714-51723733 | Msa1108670:intron | 15.0% |
!! | TCTCAAAAAAAAAAAAATCT+CGG | + | chr7_3:51723783-51723802 | Msa1108670:intron | 15.0% |
!! | AAATACTTTAATGTAGTTTA+TGG | - | chr7_3:51723898-51723917 | None:intergenic | 15.0% |
!! | NNNNNNNNNNTCAGAAATAC+AGG | + | chr7_3:51724130-51724149 | Msa1108670:intron | 15.0% |
!! | TTTAATCAAATACTATTACT+TGG | - | chr7_3:51724204-51724223 | None:intergenic | 15.0% |
!!! | TATGATATTTTAATTTGTCA+AGG | + | chr7_3:51724645-51724664 | Msa1108670:intron | 15.0% |
!!! | CAAAATTTTGTATTATTTGT+TGG | + | chr7_3:51724938-51724957 | Msa1108670:intron | 15.0% |
!! | AAAATTGGTTACTAAAATGA+AGG | - | chr7_3:51721936-51721955 | None:intergenic | 20.0% |
!!! | CATTTTAGTAACCAATTTTT+TGG | + | chr7_3:51721937-51721956 | Msa1108670:intron | 20.0% |
!!! | AAAGTATTATTAGAACTTAG+TGG | - | chr7_3:51722114-51722133 | None:intergenic | 20.0% |
!!! | GTCTAAGAAATTTTCATATT+TGG | + | chr7_3:51722539-51722558 | Msa1108670:intron | 20.0% |
!!! | AAGAAATTTTCATATTTGGA+AGG | + | chr7_3:51722543-51722562 | Msa1108670:intron | 20.0% |
!! | ACAAAAAATTACACTAATAG+AGG | - | chr7_3:51722627-51722646 | None:intergenic | 20.0% |
!!! | TTTAGCTTGAAAGTATAATA+TGG | + | chr7_3:51723018-51723037 | Msa1108670:intron | 20.0% |
!! | TAATATTTAGTTAGAGTTGT+AGG | + | chr7_3:51723041-51723060 | Msa1108670:intron | 20.0% |
!! | TATTTGAATATTGTTTGTCA+GGG | + | chr7_3:51723110-51723129 | Msa1108670:intron | 20.0% |
!!! | TGATGGATAAAATGTTATTT+TGG | + | chr7_3:51723485-51723504 | Msa1108670:intron | 20.0% |
!! | CTCAAAAAAAAAAAAATCTC+GGG | + | chr7_3:51723784-51723803 | Msa1108670:intron | 20.0% |
!!! | ACTTGTATTTCAATTTTCAA+GGG | - | chr7_3:51723979-51723998 | None:intergenic | 20.0% |
!!! | TACTTGTATTTCAATTTTCA+AGG | - | chr7_3:51723980-51723999 | None:intergenic | 20.0% |
!! | CTAAATAAAAAACTTACTTG+TGG | - | chr7_3:51724181-51724200 | None:intergenic | 20.0% |
!!! | TTGAGGTATTTTATAGTATT+TGG | + | chr7_3:51724485-51724504 | Msa1108670:intron | 20.0% |
!!! | AGAATTGTAGAAAGTTTTAA+AGG | + | chr7_3:51724826-51724845 | Msa1108670:intron | 20.0% |
!!! | GAATTGTAGAAAGTTTTAAA+GGG | + | chr7_3:51724827-51724846 | Msa1108670:intron | 20.0% |
!!! | ATTTTGTATTATTTGTTGGA+AGG | + | chr7_3:51724942-51724961 | Msa1108670:intron | 20.0% |
!! | TACATTTTGTCTTTAGTTGT+CGG | - | chr7_3:51721809-51721828 | None:intergenic | 25.0% |
! | ATCTACAAATTGCAATATAC+AGG | - | chr7_3:51722146-51722165 | None:intergenic | 25.0% |
! | AGTCGTGAATGAATAATTTA+CGG | + | chr7_3:51722238-51722257 | Msa1108670:intron | 25.0% |
! | TTCAAAGGAAATATGTCAAA+TGG | + | chr7_3:51722378-51722397 | Msa1108670:intron | 25.0% |
! | CTTATTTGAATTGAGATAGA+TGG | + | chr7_3:51722581-51722600 | Msa1108670:intron | 25.0% |
! | GATTGTTGAATAAGATTTGA+TGG | + | chr7_3:51722697-51722716 | Msa1108670:intron | 25.0% |
!! | TTTTTCTTAAGTCAAGTCAA+AGG | - | chr7_3:51722855-51722874 | None:intergenic | 25.0% |
!! | TTGATTGATAAACTTGTTTG+TGG | + | chr7_3:51722910-51722929 | Msa1108670:intron | 25.0% |
! | TGTAAATAAAAAAGAGAAGG+AGG | - | chr7_3:51722945-51722964 | None:intergenic | 25.0% |
! | ACTTTCAAGCTAAAAATCAA+CGG | - | chr7_3:51723012-51723031 | None:intergenic | 25.0% |
! | CTATTTGAATATTGTTTGTC+AGG | + | chr7_3:51723109-51723128 | Msa1108670:intron | 25.0% |
! | ATTTGAATATTGTTTGTCAG+GGG | + | chr7_3:51723111-51723130 | Msa1108670:intron | 25.0% |
!! | CAAGTATTTAGAGTAGTTTA+TGG | + | chr7_3:51723298-51723317 | Msa1108670:intron | 25.0% |
! | ACAACACATGAAAAATTTGT+AGG | + | chr7_3:51723431-51723450 | Msa1108670:intron | 25.0% |
!! | TGATCTTATACGATTTTTGA+TGG | + | chr7_3:51723468-51723487 | Msa1108670:intron | 25.0% |
!! | GGATTTGTAAAACTGTTTTA+GGG | - | chr7_3:51723613-51723632 | None:intergenic | 25.0% |
!! | TGGATTTGTAAAACTGTTTT+AGG | - | chr7_3:51723614-51723633 | None:intergenic | 25.0% |
! | AAAAAAAAAAAATCTCGGGT+TGG | + | chr7_3:51723788-51723807 | Msa1108670:intron | 25.0% |
!!! | CAATTTTCAAGGGAATTATT+AGG | - | chr7_3:51723969-51723988 | None:intergenic | 25.0% |
! | AATAAAAAACTTACTTGTGG+TGG | - | chr7_3:51724178-51724197 | None:intergenic | 25.0% |
! | GTTATAATTTCACTTGAAGT+TGG | - | chr7_3:51724238-51724257 | None:intergenic | 25.0% |
! | TGTTCCATGATTATTTATGA+AGG | + | chr7_3:51724259-51724278 | Msa1108670:intron | 25.0% |
! | TACGATATAGAACAGAAATT+TGG | - | chr7_3:51724322-51724341 | None:intergenic | 25.0% |
! | TTTATAGTATTTGGACCTAT+AGG | + | chr7_3:51724494-51724513 | Msa1108670:intron | 25.0% |
! | GTAAATGTAGAAGACATATT+TGG | - | chr7_3:51724704-51724723 | None:intergenic | 25.0% |
! | CCAATTCGGTTTTTAAATCA+TGG | - | chr7_3:51722202-51722221 | None:intergenic | 30.0% |
CCATGATTTAAAAACCGAAT+TGG | + | chr7_3:51722199-51722218 | Msa1108670:intron | 30.0% | |
GATTTAAAAACCGAATTGGA+CGG | + | chr7_3:51722203-51722222 | Msa1108670:intron | 30.0% | |
TTATTTGAACAGTTTGATCG+TGG | + | chr7_3:51722266-51722285 | Msa1108670:intron | 30.0% | |
AAAATGGTTGAACTATGATC+CGG | + | chr7_3:51722311-51722330 | Msa1108670:intron | 30.0% | |
!! | TACCAAAGGGTACTAAAAAA+GGG | + | chr7_3:51722411-51722430 | Msa1108670:intron | 30.0% |
TACACTAATAGAGGTTTATG+TGG | - | chr7_3:51722618-51722637 | None:intergenic | 30.0% | |
!!! | ATTTTAAAGTAGAGTTGTCG+AGG | - | chr7_3:51722735-51722754 | None:intergenic | 30.0% |
TTTCATCGAGCAATCAAAAT+TGG | + | chr7_3:51722781-51722800 | Msa1108670:intron | 30.0% | |
! | AAAACTAGCTCTTTGATACT+TGG | + | chr7_3:51722878-51722897 | Msa1108670:intron | 30.0% |
TATTTAGTTAGAGTTGTAGG+AGG | + | chr7_3:51723044-51723063 | Msa1108670:intron | 30.0% | |
!! | TATTTTAGACAACTTGTACG+TGG | + | chr7_3:51723508-51723527 | Msa1108670:intron | 30.0% |
! | ATTTTAGACAACTTGTACGT+GGG | + | chr7_3:51723509-51723528 | Msa1108670:intron | 30.0% |
!!! | GTTTTAGGGATATGAAAAAC+TGG | - | chr7_3:51723599-51723618 | None:intergenic | 30.0% |
!! | GTTTGGTTTGCCAAAAAATA+AGG | - | chr7_3:51723669-51723688 | None:intergenic | 30.0% |
TTATTAGGCTTTGCTTAATG+TGG | - | chr7_3:51723954-51723973 | None:intergenic | 30.0% | |
AATGACTAATATGCTCATCT+TGG | + | chr7_3:51724011-51724030 | Msa1108670:intron | 30.0% | |
TCCATGATTATTTATGAAGG+AGG | + | chr7_3:51724262-51724281 | Msa1108670:intron | 30.0% | |
TCCTCCTTCATAAATAATCA+TGG | - | chr7_3:51724266-51724285 | None:intergenic | 30.0% | |
GATTATTTATGAAGGAGGAA+AGG | + | chr7_3:51724267-51724286 | Msa1108670:intron | 30.0% | |
CTTTAATGACTACATCCTAT+AGG | - | chr7_3:51724512-51724531 | None:intergenic | 30.0% | |
! | TTACATGAGAGTATACTACC+TGG | + | chr7_3:51721777-51721796 | Msa1108670:intron | 35.0% |
CTAATGAAGCCAATTTACCT+TGG | + | chr7_3:51721833-51721852 | Msa1108670:intron | 35.0% | |
AGACATAGAATTAACCATCG+TGG | - | chr7_3:51721868-51721887 | None:intergenic | 35.0% | |
TTATTCATTCACGACTCAAC+TGG | - | chr7_3:51722234-51722253 | None:intergenic | 35.0% | |
TGGTTATGTCCAGATTCAAA+CGG | + | chr7_3:51722286-51722305 | Msa1108670:intron | 35.0% | |
!! | CCATTTTAACCGTTTGAATC+TGG | - | chr7_3:51722298-51722317 | None:intergenic | 35.0% |
CCAGATTCAAACGGTTAAAA+TGG | + | chr7_3:51722295-51722314 | Msa1108670:intron | 35.0% | |
!! | TTTTAGTACCCTTTGGTAGT+AGG | - | chr7_3:51722409-51722428 | None:intergenic | 35.0% |
!! | CTACCAAAGGGTACTAAAAA+AGG | + | chr7_3:51722410-51722429 | Msa1108670:intron | 35.0% |
!!! | AACCCTTTTTTAGTACCCTT+TGG | - | chr7_3:51722416-51722435 | None:intergenic | 35.0% |
ATTCCTTTCAGTATACCTCT+TGG | - | chr7_3:51723142-51723161 | None:intergenic | 35.0% | |
AGGTATACTGAAAGGAATGA+AGG | + | chr7_3:51723144-51723163 | Msa1108670:CDS | 35.0% | |
GGTTCTTCACCCATTTATAT+TGG | + | chr7_3:51723216-51723235 | Msa1108670:intron | 35.0% | |
ATCCACAAAACAGTAAGTAC+TGG | + | chr7_3:51723368-51723387 | Msa1108670:intron | 35.0% | |
AGACAAAACAGAACAACACA+AGG | + | chr7_3:51723404-51723423 | Msa1108670:intron | 35.0% | |
CAAGAAAAACTCCAGTTGTA+CGG | - | chr7_3:51723640-51723659 | None:intergenic | 35.0% | |
!!! | CTTGTCCTGTCCTTATTTTT+TGG | + | chr7_3:51723656-51723675 | Msa1108670:intron | 35.0% |
GTTTGCCAAAAAATAAGGAC+AGG | - | chr7_3:51723664-51723683 | None:intergenic | 35.0% | |
AAAAGAAGTCCTTCAAATGC+AGG | + | chr7_3:51724432-51724451 | Msa1108670:CDS | 35.0% | |
GAACATGTATAACTTCCAAG+AGG | + | chr7_3:51724884-51724903 | Msa1108670:intron | 35.0% | |
TACTTTGTCCAATTCTGTCT+AGG | - | chr7_3:51725011-51725030 | None:intergenic | 35.0% | |
!! | ATCCTTTAAAACACAATCCG+AGG | + | chr7_3:51725116-51725135 | Msa1108670:CDS | 35.0% |
!! | TTCCTCGGATTGTGTTTTAA+AGG | - | chr7_3:51725121-51725140 | None:intergenic | 35.0% |
TCAAACAGCAAGAAAGCAAA+AGG | + | chr7_3:51725146-51725165 | Msa1108670:CDS | 35.0% | |
! | GATGAGAATGTTTTTCCTAC+AGG | + | chr7_3:51725174-51725193 | Msa1108670:CDS | 35.0% |
!!! | TTTCCTACAGGTTTTGAACT+AGG | + | chr7_3:51725186-51725205 | Msa1108670:CDS | 35.0% |
AATAAGAAACTAGGCACCAA+AGG | - | chr7_3:51725291-51725310 | None:intergenic | 35.0% | |
TTTAGTTGTCGGAAGAAACC+AGG | - | chr7_3:51721798-51721817 | None:intergenic | 40.0% | |
CGATGTTCACCAAGGTAAAT+TGG | - | chr7_3:51721845-51721864 | None:intergenic | 40.0% | |
CTGAAAGAGGCCCAAAAAAT+TGG | - | chr7_3:51721951-51721970 | None:intergenic | 40.0% | |
AACCCATAACTGAACTCTTG+GGG | - | chr7_3:51721975-51721994 | None:intergenic | 40.0% | |
GAACCCATAACTGAACTCTT+GGG | - | chr7_3:51721976-51721995 | None:intergenic | 40.0% | |
TCTTAAGCGTTCTTTGTGTG+TGG | - | chr7_3:51722019-51722038 | None:intergenic | 40.0% | |
CACACAAAGAACGCTTAAGA+TGG | + | chr7_3:51722019-51722038 | Msa1108670:CDS | 40.0% | |
ACAACTCCATGATCTCTTTG+TGG | + | chr7_3:51722047-51722066 | Msa1108670:CDS | 40.0% | |
TCTTTGTGGAGGCTGTAAAT+AGG | + | chr7_3:51722061-51722080 | Msa1108670:CDS | 40.0% | |
AGTGGCAAAAACTCACTATC+TGG | - | chr7_3:51722096-51722115 | None:intergenic | 40.0% | |
ATGGTCAATCCTACTACCAA+AGG | + | chr7_3:51722397-51722416 | Msa1108670:intron | 40.0% | |
TGGTCAATCCTACTACCAAA+GGG | + | chr7_3:51722398-51722417 | Msa1108670:intron | 40.0% | |
! | ACACCAAGAGGTATACTGAA+AGG | + | chr7_3:51723136-51723155 | Msa1108670:CDS | 40.0% |
ACTGAAAGGAATGAAGGCTA+TGG | + | chr7_3:51723150-51723169 | Msa1108670:CDS | 40.0% | |
CTGAAAGGAATGAAGGCTAT+GGG | + | chr7_3:51723151-51723170 | Msa1108670:CDS | 40.0% | |
! | GTCCAGTACTTACTGTTTTG+TGG | - | chr7_3:51723373-51723392 | None:intergenic | 40.0% |
CAAAAAGTTGTGTGGTGGTT+TGG | + | chr7_3:51723533-51723552 | Msa1108670:intron | 40.0% | |
CATATAAATGTGGGTGCGTT+TGG | - | chr7_3:51723686-51723705 | None:intergenic | 40.0% | |
TAGGCTTTGCTTAATGTGGA+TGG | - | chr7_3:51723950-51723969 | None:intergenic | 40.0% | |
!! | GGTGGATTCTGGAATCAATT+TGG | - | chr7_3:51724160-51724179 | None:intergenic | 40.0% |
!! | AACTTACTTGTGGTGGATTC+TGG | - | chr7_3:51724171-51724190 | None:intergenic | 40.0% |
ACGCATGAGTGATAAAGTTG+AGG | + | chr7_3:51724468-51724487 | Msa1108670:CDS | 40.0% | |
!!! | CCATGTCTGTTTTTTCCTCT+TGG | - | chr7_3:51724902-51724921 | None:intergenic | 40.0% |
CCAAGAGGAAAAAACAGACA+TGG | + | chr7_3:51724899-51724918 | Msa1108670:intron | 40.0% | |
GGAAGGTTCAAAAAAGCTTG+AGG | + | chr7_3:51724959-51724978 | Msa1108670:intron | 40.0% | |
AGGCTGAAAATTGAAGCACA+AGG | + | chr7_3:51724979-51724998 | Msa1108670:CDS | 40.0% | |
!! | GGAAAGTACCTAGACAGAAT+TGG | + | chr7_3:51725000-51725019 | Msa1108670:CDS | 40.0% |
AAGAAAAGCTTGCAAGCCTT+TGG | + | chr7_3:51725050-51725069 | Msa1108670:CDS | 40.0% | |
TCAGATTCCTCAGTAAGAGA+GGG | - | chr7_3:51725096-51725115 | None:intergenic | 40.0% | |
TTCAGATTCCTCAGTAAGAG+AGG | - | chr7_3:51725097-51725116 | None:intergenic | 40.0% | |
! | TGCTGTTTGATGTTCTTCCT+CGG | - | chr7_3:51725136-51725155 | None:intergenic | 40.0% |
GATCCTAGTTCAAAACCTGT+AGG | - | chr7_3:51725192-51725211 | None:intergenic | 40.0% | |
AGACCCCAAGAGTTCAGTTA+TGG | + | chr7_3:51721969-51721988 | Msa1108670:intron | 45.0% | |
GACCCCAAGAGTTCAGTTAT+GGG | + | chr7_3:51721970-51721989 | Msa1108670:intron | 45.0% | |
GGAACCCATAACTGAACTCT+TGG | - | chr7_3:51721977-51721996 | None:intergenic | 45.0% | |
ACTCCATGATCTCTTTGTGG+AGG | + | chr7_3:51722050-51722069 | Msa1108670:CDS | 45.0% | |
TGGAGGCTGTAAATAGGCTT+GGG | + | chr7_3:51722067-51722086 | Msa1108670:CDS | 45.0% | |
ACTGGTTGAACCGTCCAATT+CGG | - | chr7_3:51722216-51722235 | None:intergenic | 45.0% | |
CTATGATCCGGATGTCTTGT+AGG | + | chr7_3:51722323-51722342 | Msa1108670:intron | 45.0% | |
CATTGAGCCTACAAGACATC+CGG | - | chr7_3:51722333-51722352 | None:intergenic | 45.0% | |
TGTCTTGTAGGCTCAATGTC+TGG | + | chr7_3:51722335-51722354 | Msa1108670:intron | 45.0% | |
ACGTGGGACAAAAAGTTGTG+TGG | + | chr7_3:51723525-51723544 | Msa1108670:intron | 45.0% | |
TGGGACAAAAAGTTGTGTGG+TGG | + | chr7_3:51723528-51723547 | Msa1108670:intron | 45.0% | |
CAAATCCAACACCGTACAAC+TGG | + | chr7_3:51723626-51723645 | Msa1108670:intron | 45.0% | |
AAACTCCAGTTGTACGGTGT+TGG | - | chr7_3:51723634-51723653 | None:intergenic | 45.0% | |
AAAGCTTGCAAGCCTTTGGT+TGG | + | chr7_3:51725054-51725073 | Msa1108670:CDS | 45.0% | |
!! | GGTGTTGCTTTACCAACCAA+AGG | - | chr7_3:51725069-51725088 | None:intergenic | 45.0% |
!! | GTTGCTGAATTCTGAGGTAG+TGG | - | chr7_3:51725217-51725236 | None:intergenic | 45.0% |
! | GGTTTGGTTGCTGAATTCTG+AGG | - | chr7_3:51725223-51725242 | None:intergenic | 45.0% |
CAGAATTCAGCAACCAAACC+TGG | + | chr7_3:51725223-51725242 | Msa1108670:CDS | 45.0% | |
ACCAAACCTGGAACCTTTCT+TGG | + | chr7_3:51725235-51725254 | Msa1108670:CDS | 45.0% | |
TCCAAGAAAGGTTCCAGGTT+TGG | - | chr7_3:51725239-51725258 | None:intergenic | 45.0% | |
AGCAACCTACCAATCACCTT+TGG | + | chr7_3:51725272-51725291 | Msa1108670:CDS | 45.0% | |
AACTAGGCACCAAAGGTGAT+TGG | - | chr7_3:51725284-51725303 | None:intergenic | 45.0% | |
GAACTCTTGGGGTCTGAAAG+AGG | - | chr7_3:51721964-51721983 | None:intergenic | 50.0% | |
CAGCCTCCACAAAGAGATCA+TGG | - | chr7_3:51722056-51722075 | None:intergenic | 50.0% | |
GTGGAGGCTGTAAATAGGCT+TGG | + | chr7_3:51722066-51722085 | Msa1108670:CDS | 50.0% | |
GGAGGCTGTAAATAGGCTTG+GGG | + | chr7_3:51722068-51722087 | Msa1108670:CDS | 50.0% | |
GAGGCTGTAAATAGGCTTGG+GGG | + | chr7_3:51722069-51722088 | Msa1108670:CDS | 50.0% | |
AGGCTGTAAATAGGCTTGGG+GGG | + | chr7_3:51722070-51722089 | Msa1108670:CDS | 50.0% | |
ACACGTCAAAAGCCACTTGC+AGG | + | chr7_3:51723195-51723214 | Msa1108670:CDS | 50.0% | |
ATGGGTGAAGAACCTGCAAG+TGG | - | chr7_3:51723210-51723229 | None:intergenic | 50.0% | |
!! | AGTTGTGTGGTGGTTTGGTG+AGG | + | chr7_3:51723538-51723557 | Msa1108670:intron | 50.0% |
!! | GTTGTGTGGTGGTTTGGTGA+GGG | + | chr7_3:51723539-51723558 | Msa1108670:intron | 50.0% |
AGTCCTTCAAATGCAGGCTG+AGG | + | chr7_3:51724438-51724457 | Msa1108670:CDS | 50.0% | |
ACCTCTTCCCTCTCTTACTG+AGG | + | chr7_3:51725086-51725105 | Msa1108670:CDS | 50.0% | |
TCCTCAGTAAGAGAGGGAAG+AGG | - | chr7_3:51725090-51725109 | None:intergenic | 50.0% | |
CTGACTCCAAGAAAGGTTCC+AGG | - | chr7_3:51725244-51725263 | None:intergenic | 50.0% | |
GAACCTTTCTTGGAGTCAGC+TGG | + | chr7_3:51725245-51725264 | Msa1108670:CDS | 50.0% | |
AGGCACCAAAGGTGATTGGT+AGG | - | chr7_3:51725280-51725299 | None:intergenic | 50.0% | |
CATCGTGGCGATGTTCACCA+AGG | - | chr7_3:51721853-51721872 | None:intergenic | 55.0% | |
CTTGGTGAACATCGCCACGA+TGG | + | chr7_3:51721851-51721870 | Msa1108670:intron | 55.0% | |
TTGTCAGGGGCAACACCAAG+AGG | + | chr7_3:51723124-51723143 | Msa1108670:intron | 55.0% | |
GCACCTCAGCCTGCATTTGA+AGG | - | chr7_3:51724444-51724463 | None:intergenic | 55.0% | |
! | CAGCCAGCTGACTCCAAGAA+AGG | - | chr7_3:51725251-51725270 | None:intergenic | 55.0% |
ATGGGTTCCACCCGCTCAGA+TGG | + | chr7_3:51721988-51722007 | Msa1108670:CDS | 60.0% | |
TGTGGCAGAGCCATCTGAGC+GGG | - | chr7_3:51722001-51722020 | None:intergenic | 60.0% | |
GTGTGGCAGAGCCATCTGAG+CGG | - | chr7_3:51722002-51722021 | None:intergenic | 60.0% | |
GGCAGAGCCATCTGAGCGGG+TGG | - | chr7_3:51721998-51722017 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 51721765 | 51725311 | 51721765 | ID=Msa1108670;Name=Msa1108670 |
chr7_3 | mRNA | 51721765 | 51725311 | 51721765 | ID=Msa1108670-mRNA-1;Parent=Msa1108670;Name=Msa1108670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=25|0|0|0.83|0.4|0.33|6|0|222 |
chr7_3 | exon | 51721765 | 51721772 | 51721765 | ID=Msa1108670-mRNA-1:exon:10702;Parent=Msa1108670-mRNA-1 |
chr7_3 | exon | 51721971 | 51722099 | 51721971 | ID=Msa1108670-mRNA-1:exon:10703;Parent=Msa1108670-mRNA-1 |
chr7_3 | exon | 51723131 | 51723216 | 51723131 | ID=Msa1108670-mRNA-1:exon:10704;Parent=Msa1108670-mRNA-1 |
chr7_3 | exon | 51724289 | 51724338 | 51724289 | ID=Msa1108670-mRNA-1:exon:10705;Parent=Msa1108670-mRNA-1 |
chr7_3 | exon | 51724420 | 51724489 | 51724420 | ID=Msa1108670-mRNA-1:exon:10706;Parent=Msa1108670-mRNA-1 |
chr7_3 | exon | 51724964 | 51725311 | 51724964 | ID=Msa1108670-mRNA-1:exon:10707;Parent=Msa1108670-mRNA-1 |
chr7_3 | five_prime_UTR | 51721765 | 51721772 | 51721765 | ID=Msa1108670-mRNA-1:five_prime_utr;Parent=Msa1108670-mRNA-1 |
chr7_3 | five_prime_UTR | 51721971 | 51721987 | 51721971 | ID=Msa1108670-mRNA-1:five_prime_utr;Parent=Msa1108670-mRNA-1 |
chr7_3 | CDS | 51721988 | 51722099 | 51721988 | ID=Msa1108670-mRNA-1:cds;Parent=Msa1108670-mRNA-1 |
chr7_3 | CDS | 51723131 | 51723216 | 51723131 | ID=Msa1108670-mRNA-1:cds;Parent=Msa1108670-mRNA-1 |
chr7_3 | CDS | 51724289 | 51724338 | 51724289 | ID=Msa1108670-mRNA-1:cds;Parent=Msa1108670-mRNA-1 |
chr7_3 | CDS | 51724420 | 51724489 | 51724420 | ID=Msa1108670-mRNA-1:cds;Parent=Msa1108670-mRNA-1 |
chr7_3 | CDS | 51724964 | 51725311 | 51724964 | ID=Msa1108670-mRNA-1:cds;Parent=Msa1108670-mRNA-1 |
Gene Sequence |
Protein sequence |