AlfalfaGEDB | Msa1109100

M. sativa cultivar zhongmu-4 / Msa1109100

KEGG: -
GO: -
PFAM: PF07719.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1109100	AES79553.1	90.485	1051	50	5	57	1060	1	1048	0.0	1929

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1109100	sp\|O65020\|ETO1_ARATH	64.921	1012	267	9	65	1054	1	946	0.0	1286

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1109100	G7KSD2	90.485	1051	50	5	57	1060	1	1048	0.0	1929

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TFs/TRs:

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Gene ID	Type	Classification
Msa1109100	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1109100	MtrunA17_Chr7g0243131	87.483	751	36	3	310	1060	1	693	0.0	1327
Msa1109100	MtrunA17_Chr4g0005681	67.092	1018	247	12	57	1056	1	948	0.0	1325
Msa1109100	MtrunA17_Chr1g0185181	47.380	916	387	8	145	1051	51	880	0.0	770
Msa1109100	MtrunA17_Chr3g0105811	52.807	659	281	10	65	713	1	639	0.0	664
Msa1109100	MtrunA17_Chr3g0105811	73.606	269	71	0	786	1054	654	922	5.31e-130	417
Msa1109100	MtrunA17_Chr3g0105811	32.338	201	132	1	842	1042	385	581	1.82e-24	110
Msa1109100	MtrunA17_Chr3g0105811	28.780	205	143	1	454	655	706	910	6.22e-20	96.3
Msa1109100	MtrunA17_Chr7g0243111	95.876	194	8	0	57	250	1	194	1.31e-127	386

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1109100	AT3G51770.2	64.902	1020	270	9	57	1054	1	954	1298
Msa1109100	AT3G51770.1	64.921	1012	267	9	65	1054	1	946	1286
Msa1109100	AT5G58550.1	49.654	1011	391	12	65	1055	1	913	936
Msa1109100	AT4G02680.1	47.253	910	399	7	145	1051	51	882	760

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Find 263 sgRNAs with CRISPR-Local

Find 465 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCCCGGTGTTTATA+TGG	0.268161	7_3:-52475783	None:intergenic
AAAATCTTCATAGCTGGATA+TGG	0.354654	7_3:-52480235	None:intergenic
AAACGAGTCAGCTAATGCAT+AGG	0.627652	7_3:-52477797	None:intergenic
AAACTAAGATCGTTCTTTGC+CGG	0.370718	7_3:-52478250	None:intergenic
AAAGACTTGTCTATGAAGGA+TGG	0.571019	7_3:+52477680	Msa1109100:CDS
AAAGAGCCGCTTCACAGTCT+TGG	0.472906	7_3:-52479602	None:intergenic
AAAGAGTGTGATTGATCTCT+TGG	0.347427	7_3:+52477837	Msa1109100:CDS
AAAGATCTTTGTATTGCATC+GGG	0.471830	7_3:+52475703	Msa1109100:CDS
AAAGGTCGAAATGAAGCAAC+AGG	0.489824	7_3:+52476741	Msa1109100:CDS
AAATCAAACGGCTTCAAACA+AGG	0.560982	7_3:-52474460	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAAGTGGAAAATTAACGG+TGG	-	chr7_3:52474101-52474120	None:intergenic	30.0%
AAGAAAAGTTGAATGTCCTA+AGG	+	chr7_3:52474723-52474742	Msa1109100:CDS	30.0%
CCATACAACATTGTCATAAA+AGG	-	chr7_3:52474961-52474980	None:intergenic	30.0%
TTTATGACAATGTTGTATGG+TGG	+	chr7_3:52474961-52474980	Msa1109100:CDS	30.0%
AGGACATATTTATTCTTCAG+TGG	+	chr7_3:52475578-52475597	Msa1109100:CDS	30.0%
GGACATATTTATTCTTCAGT+GGG	+	chr7_3:52475579-52475598	Msa1109100:CDS	30.0%
ATTTCTGATCTTAAACCTGT+TGG	+	chr7_3:52475666-52475685	Msa1109100:CDS	30.0%
GAAAGATCTTTGTATTGCAT+CGG	+	chr7_3:52475702-52475721	Msa1109100:CDS	30.0%
AAAGATCTTTGTATTGCATC+GGG	+	chr7_3:52475703-52475722	Msa1109100:CDS	30.0%
ATGTTCTATGGGAATATGAA+AGG	+	chr7_3:52475981-52476000	Msa1109100:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	52474013	52480245	52474013	ID=Msa1109100;Name=Msa1109100
chr7_3	mRNA	52474013	52480245	52474013	ID=Msa1109100-mRNA-1;Parent=Msa1109100;Name=Msa1109100-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.5\|0.6\|1\|1\|1\|5\|547\|1060
chr7_3	exon	52474013	52476189	52474013	ID=Msa1109100-mRNA-1:exon:11009;Parent=Msa1109100-mRNA-1
chr7_3	exon	52476689	52476862	52476689	ID=Msa1109100-mRNA-1:exon:11010;Parent=Msa1109100-mRNA-1
chr7_3	exon	52477612	52477903	52477612	ID=Msa1109100-mRNA-1:exon:11011;Parent=Msa1109100-mRNA-1
chr7_3	exon	52478016	52478325	52478016	ID=Msa1109100-mRNA-1:exon:11012;Parent=Msa1109100-mRNA-1
chr7_3	exon	52479469	52480245	52479469	ID=Msa1109100-mRNA-1:exon:11013;Parent=Msa1109100-mRNA-1
chr7_3	CDS	52474013	52476189	52474013	ID=Msa1109100-mRNA-1:cds;Parent=Msa1109100-mRNA-1
chr7_3	CDS	52476689	52476862	52476689	ID=Msa1109100-mRNA-1:cds;Parent=Msa1109100-mRNA-1
chr7_3	CDS	52477612	52477903	52477612	ID=Msa1109100-mRNA-1:cds;Parent=Msa1109100-mRNA-1
chr7_3	CDS	52478016	52478325	52478016	ID=Msa1109100-mRNA-1:cds;Parent=Msa1109100-mRNA-1
chr7_3	CDS	52479469	52479698	52479469	ID=Msa1109100-mRNA-1:cds;Parent=Msa1109100-mRNA-1
chr7_3	three_prime_UTR	52479699	52480245	52479699	ID=Msa1109100-mRNA-1:three_prime_utr;Parent=Msa1109100-mRNA-1

Gene Sequence

>Msa1109100

ATGATCTTATGTTCATCCACTTTTGCTCTCTCTCATTCCATTTCCACAACCTTAAAATCTAAAACCTTGAATCATTCTCAAACCACCACCGTTAATTTTCCACTTTTAGTGGAACTAAAAAAACCAAAAAAACAACAAAAAAAAAACACAACAATTTTTCCCCCGAAGATGCAGCACAACATCCTCACCTCGATCCGAAGCACGAAAATCACGGATGGTTGTAAAAGCAATCAAATCTACGCTCTCAACACCTCCGCCGCCGCCGATTCTCCGATCAACGCCGTCATCGGCGGCGGCGATTCCATCGCTGAAAAACTCTTCCATCATTTACTAGACCGCTCCAAAACTTCCGGTCGAACTAAACCGGTTGGACCCAAAACAGCCACACTGGAAGCTCTTCTTCCTTGTGGCCTTCCTTCGTCGGAGCTTCTAGAACCTTCGATTGAGCCTTGTTTGAAGCCGTTTGATTTGGTTCAAACCCTCGCCGGCGTTCGTCGCCGGATCGAGGGTGAGGGTGTGAAATTTGAAGCTTTTTTGGAACAGTGTTTGGTTTTTAAGGGGTTTTCTGATAGTAAATTGTTCCGGCGGAGTCTCCGGTCGGCGCGGCAGCATGCTGTTGATGTGCATGATAAGGTTGTGTTGGCTGCTTGGTTGAGGTATGAGAGGAGAGAGGATGAGCTTGTTGGTTCTTCTGCAATGGATTGTTGTGGAAGAAAAGTTGAATGTCCTAAGGCTAGTTTGGTTTCAGGGTGTGATCATGAATCTGGTTTTGATCATTGTTCGTGTTTGCGAAAAAATAATATTGTTAGTGTTGATAATGTTGATGGGGAATGTGAATGCTCAACTTCTTATGAAGATGAGGATGGTGATTACCATGATATTTCTTTTTGTATAGGTGATAGTGAAATTAGGTGTAGTAGATATTTTATGGCGTCGCTTTCGAGGCCTTTTATGACAATGTTGTATGGTGGATTTGTTGAGTCTAGGAGGGAGAAGATAAATTTTTCTCTTAATGATTTTTCTGTTGAGGTGATGAGGGCGGTTGAGGTTTTTAGTAGAACCAAGAGGTTGAGTCAGTTTGGGAATGATCTTGTGCTTGGGATGCTTTCTTTTGCGAATAGGTTTTGTTGTACGGAGATGAAATCGGCTTGTGATGCTCATTTGGCTGCTTTGGTGTTGGATATGGATGATGCGTTGTTGTTGATTGAGTATGGATTGGAGGAGATGGCGTATTTGCTAGTGGCAGCTTGCTTGCAGGTGTTTCTGAGAGGGCTCCCTAGCTCGATGCAACGTTTGAGTGTCAAGAGATTGTTTTGTAGTGTAGAGGGTAGAGATAGACTGGCTTGTGTAGGGCATGTGTCGTTTTCATTGTATTGTTTTTTGAGTCATGTTGCGATGGAGGAAGATATGAAATCTAATACGACAGTGATGCTCTTAGAGAGGTTAGGAGAATGTGCGGAGAATGGTTGGCAGAAGCAACTTGCTTATCACCAATTAGGTGTTGTGATGTTTGAGAGAAAAGAATACAAAGATGCACAAAATTGGTTTGAGGCTGCTGTTAAGGAAGGACATATTTATTCTTCAGTGGGTGTTGCAAGAGCCAAATATAAGCGTGGTCACACATATTCATCATACAAGATGATAAACTCCCTTATTTCTGATCTTAAACCTGTTGGTTGGATGTATCAGGAAAGATCTTTGTATTGCATCGGGAAGGAAAAAGCGATGGATTTGATCTCTGCAACTGAGTTAGACCCAACTCTTTCTTTTCCATATAAACACCGGGCTGTTTTTTTCTTGGAGGAGAATAAGATTGGAGCTGCCATTTCTGAAATCAATAAAATAATTGGTTTCAAGATTTCACCTGACTGCCTTGAATTGAGAGCTTGGTTCTTGATTGCCATGAAGGATTATGAAGGAGCCCTTAGGGATGTCAGGGCAATTTTGACATTGGATCCAAATTATATGATGTTCTATGGGAATATGAAAGGCGATCGTTTGGTAGAACTTCTTCGCCCTGTTGCTCAGAAGTGGAACCAGGCTGATTGTTGGATGCAATTGTATGACAGATGGTCTTCCGTTGATGATATTGGTTCTTTGGCTGTTGTTCACCAGATGTTAGAAAATAACCCGGGGAAAAGTATTTTACGCTTTCGGCAATCTTTACTTCTGTTACGAAGTTCTCAAATCCATGGCCATTTCATTCATTTCGATGTGAGCTATGGTGAGAAAGGTCGAAATGAAGCAACAGGTGGGCATGGAGTGGACCTAGTCATCCACGAACCAAAGTCTTTGCTTGTTTATAGAAAGAAGGGTAAGACCGTAAGACTAAGAGAGGAAAGAGTTGTCAAGTTAAATTCTCAGAAGGCAGCCATGCGTAGTCTGCGTCTGGCTAGAAATCATTCTTCTTCAGCACATGAAAGACTTGTCTATGAAGGATGGATATTGTATGACACTGGTCATCGTGAAGAAGCTATAGCAAAGGCTGAGGAGTCGATTTCTATTCAAAGGTCATTTGAAGCTTTCTTTCTCAAAGCCTATGCATTAGCTGACTCGTTTCTTGATTCAGAGTCTTCAAAGAGTGTGATTGATCTCTTGGAGGAAGCTCTTAAATGTCCTTCAGATGGTCTTCGGAAGGGACAGGCACTCAATAATTTAGGGAGTATATATGTAGATTGCAATCAGCTAGACCTTGCTGCTGACTGCTACAAGCATGCACTTAACATCAAGCATACACGAGCACATCAGGGGTTGGCACGTGTATATCATCTTCAACGTCAGCCCAAAGCGGCATATGATGAGATGACAAAGCTGATAGAAAAGGCCCAAAATAATGCATCAGCTTATGAGAAACGTTCAGAATATTGCGATCGTGACCCGGCAAAGAACGATCTTAGTTTGGCAACACAGTTGGATCCTCTAAGGACATATCCGTACAGATATAGGGCAGCAGTGTTAATGGACGATCATAAGGAAACTGAAGCAATTGCAGAGCTTTCAAGGGCCATCAACTTTAAGCCAGAATTGCAACTGTTACATCTTCGAGCGGCATTTTATGAATCAATGGATGATTACGTTTCTACTGTCCAAGACTGTGAAGCGGCTCTTTGTCTTGATCCTAGCCATGCTGAGGTGTTAGAAATTTGTAATAGAGCCCGGCAAAAAATTATCGATGGAAAGTGA

Protein sequence

>Msa1109100

MILCSSTFALSHSISTTLKSKTLNHSQTTTVNFPLLVELKKPKKQQKKNTTIFPPKMQHNILTSIRSTKITDGCKSNQIYALNTSAAADSPINAVIGGGDSIAEKLFHHLLDRSKTSGRTKPVGPKTATLEALLPCGLPSSELLEPSIEPCLKPFDLVQTLAGVRRRIEGEGVKFEAFLEQCLVFKGFSDSKLFRRSLRSARQHAVDVHDKVVLAAWLRYERREDELVGSSAMDCCGRKVECPKASLVSGCDHESGFDHCSCLRKNNIVSVDNVDGECECSTSYEDEDGDYHDISFCIGDSEIRCSRYFMASLSRPFMTMLYGGFVESRREKINFSLNDFSVEVMRAVEVFSRTKRLSQFGNDLVLGMLSFANRFCCTEMKSACDAHLAALVLDMDDALLLIEYGLEEMAYLLVAACLQVFLRGLPSSMQRLSVKRLFCSVEGRDRLACVGHVSFSLYCFLSHVAMEEDMKSNTTVMLLERLGECAENGWQKQLAYHQLGVVMFERKEYKDAQNWFEAAVKEGHIYSSVGVARAKYKRGHTYSSYKMINSLISDLKPVGWMYQERSLYCIGKEKAMDLISATELDPTLSFPYKHRAVFFLEENKIGAAISEINKIIGFKISPDCLELRAWFLIAMKDYEGALRDVRAILTLDPNYMMFYGNMKGDRLVELLRPVAQKWNQADCWMQLYDRWSSVDDIGSLAVVHQMLENNPGKSILRFRQSLLLLRSSQIHGHFIHFDVSYGEKGRNEATGGHGVDLVIHEPKSLLVYRKKGKTVRLREERVVKLNSQKAAMRSLRLARNHSSSAHERLVYEGWILYDTGHREEAIAKAEESISIQRSFEAFFLKAYALADSFLDSESSKSVIDLLEEALKCPSDGLRKGQALNNLGSIYVDCNQLDLAADCYKHALNIKHTRAHQGLARVYHLQRQPKAAYDEMTKLIEKAQNNASAYEKRSEYCDRDPAKNDLSLATQLDPLRTYPYRYRAAVLMDDHKETEAIAELSRAINFKPELQLLHLRAAFYESMDDYVSTVQDCEAALCLDPSHAEVLEICNRARQKIIDGK*