Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1109280 | XP_024626741.1 | 91.176 | 272 | 23 | 1 | 1 | 272 | 1 | 271 | 0.0 | 510 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1109280 | A0A2Z6NVK6 | 51.735 | 317 | 97 | 8 | 1 | 264 | 1 | 314 | 4.21e-88 | 275 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1109280 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1109280 | MtrunA17_Chr7g0255491 | 60.159 | 251 | 72 | 5 | 20 | 243 | 1 | 250 | 5.10e-83 | 250 |
| Msa1109280 | MtrunA17_Chr1g0149811 | 39.200 | 125 | 61 | 5 | 63 | 179 | 76 | 193 | 1.40e-12 | 66.2 |
| Msa1109280 | MtrunA17_Chr7g0239711 | 68.421 | 38 | 12 | 0 | 83 | 120 | 54 | 91 | 5.44e-12 | 63.5 |
| Msa1109280 | MtrunA17_Chr3g0081131 | 43.678 | 87 | 32 | 3 | 67 | 146 | 72 | 148 | 1.50e-11 | 63.5 |
| Msa1109280 | MtrunA17_Chr3g0081141 | 49.254 | 67 | 27 | 1 | 66 | 125 | 71 | 137 | 1.62e-11 | 63.5 |
| Msa1109280 | MtrunA17_Chr7g0250871 | 33.803 | 142 | 69 | 7 | 73 | 207 | 38 | 161 | 4.43e-11 | 60.5 |
| Msa1109280 | MtrunA17_Chr7g0224221 | 36.111 | 108 | 60 | 2 | 26 | 126 | 83 | 188 | 4.59e-11 | 62.4 |
| Msa1109280 | MtrunA17_Chr8g0376021 | 77.419 | 31 | 7 | 0 | 88 | 118 | 64 | 94 | 7.71e-11 | 60.5 |
| Msa1109280 | MtrunA17_Chr3g0110091 | 71.795 | 39 | 9 | 1 | 80 | 118 | 82 | 118 | 8.04e-11 | 60.8 |
| Msa1109280 | MtrunA17_Chr3g0081121 | 43.678 | 87 | 27 | 5 | 86 | 172 | 98 | 162 | 9.71e-11 | 61.2 |
| Msa1109280 | MtrunA17_Chr5g0434121 | 80.645 | 31 | 6 | 0 | 88 | 118 | 89 | 119 | 9.93e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1109280 | AT5G10970.1 | 39.837 | 123 | 48 | 6 | 63 | 179 | 84 | 186 | 1.33e-11 | 63.9 |
| Msa1109280 | AT5G25160.1 | 41.837 | 98 | 48 | 4 | 82 | 179 | 57 | 145 | 1.76e-11 | 63.2 |
| Msa1109280 | AT1G80730.1 | 68.293 | 41 | 11 | 1 | 78 | 118 | 60 | 98 | 5.34e-11 | 61.6 |
Find 81 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACCAATGCCTTTCCTTCT+TGG | 0.138422 | 7_3:-52806603 | Msa1109280:CDS |
| TTTGATTTCGACTCTAATTT+TGG | 0.159297 | 7_3:+52807015 | None:intergenic |
| TGAATTATGCCTTCTCTATT+AGG | 0.184623 | 7_3:+52806328 | None:intergenic |
| CCCCAAGCAACAACACAATT+TGG | 0.187401 | 7_3:-52806493 | Msa1109280:CDS |
| TCTTGGCTCGGTTCACCTTA+TGG | 0.231125 | 7_3:-52806586 | Msa1109280:CDS |
| TGGTGTGAGTGCCAAGTCTT+AGG | 0.231168 | 7_3:+52806935 | None:intergenic |
| CGGGTTGCAAAGGGTGTATT+TGG | 0.256836 | 7_3:+52806541 | None:intergenic |
| CCCAAATTGTGTTGTTGCTT+GGG | 0.273537 | 7_3:+52806492 | None:intergenic |
| GTTGTTGCTTGGGGTGAATT+TGG | 0.275394 | 7_3:+52806502 | None:intergenic |
| CCCAAAGTGTTTGACCTTTG+TGG | 0.286115 | 7_3:+52806424 | None:intergenic |
| GTTCACGCTTATGAGCATTT+TGG | 0.317761 | 7_3:+52806764 | None:intergenic |
| AGGTCAAACACTTTGGGTTT+GGG | 0.338136 | 7_3:-52806418 | Msa1109280:CDS |
| CCACAAAGGTCAAACACTTT+GGG | 0.340923 | 7_3:-52806424 | Msa1109280:CDS |
| GTGTTTGACCTTTGTGGAAT+TGG | 0.343209 | 7_3:+52806430 | None:intergenic |
| AAGGTCAAACACTTTGGGTT+TGG | 0.344659 | 7_3:-52806419 | Msa1109280:CDS |
| CAAGGGTTTGGAAGTGGACT+TGG | 0.360530 | 7_3:+52806915 | None:intergenic |
| GTCACATATTGGACGCCAAT+TGG | 0.375665 | 7_3:+52806622 | None:intergenic |
| TCCCAAATTGTGTTGTTGCT+TGG | 0.377648 | 7_3:+52806491 | None:intergenic |
| TTCTCCACTTCTCAAGCTCT+TGG | 0.384550 | 7_3:-52806793 | Msa1109280:CDS |
| TAGAAACCTCAAACGCAAAA+TGG | 0.385914 | 7_3:-52807046 | Msa1109280:CDS |
| TCCACCGTTCTCCAAGGGTT+TGG | 0.389944 | 7_3:+52806903 | None:intergenic |
| CACCTTATGGTGGCTATGGA+GGG | 0.398816 | 7_3:-52806573 | Msa1109280:CDS |
| GAAAGGCATTGGTCACATAT+TGG | 0.406502 | 7_3:+52806611 | None:intergenic |
| TAATAGAGAAGGCATAATTC+AGG | 0.407241 | 7_3:-52806326 | Msa1109280:CDS |
| CCCAAGCAACAACACAATTT+GGG | 0.410223 | 7_3:-52806492 | Msa1109280:CDS |
| TCCACAAAGGTCAAACACTT+TGG | 0.411221 | 7_3:-52806425 | Msa1109280:CDS |
| TTAGGATCACGAGATAATAA+TGG | 0.420098 | 7_3:+52806346 | None:intergenic |
| ACCACTTTCTGCTCAGGTAA+AGG | 0.442903 | 7_3:+52806847 | None:intergenic |
| TCAAGCTCTATTCACTATCA+AGG | 0.445678 | 7_3:-52806679 | Msa1109280:CDS |
| AATGCCTTTCCTTCTTGGCT+CGG | 0.453136 | 7_3:-52806598 | Msa1109280:CDS |
| TTGGCATTTGCATCACATAC+CGG | 0.471216 | 7_3:+52806521 | None:intergenic |
| GTTCTCCAAGGGTTTGGAAG+TGG | 0.473154 | 7_3:+52806909 | None:intergenic |
| TCACATATTGGACGCCAATT+GGG | 0.475144 | 7_3:+52806623 | None:intergenic |
| TCACCTTATGGTGGCTATGG+AGG | 0.475493 | 7_3:-52806574 | Msa1109280:CDS |
| TCCACTTCTCAAGCTCTTGG+AGG | 0.477317 | 7_3:-52806790 | Msa1109280:CDS |
| GCTAACTTGCACAACCCAAT+TGG | 0.486494 | 7_3:-52806637 | Msa1109280:CDS |
| GGTGTGAGTGCCAAGTCTTA+GGG | 0.491546 | 7_3:+52806936 | None:intergenic |
| TAAAAGGAGAGAGGAAGAGA+TGG | 0.501837 | 7_3:-52806719 | Msa1109280:CDS |
| GGTTCACCTTATGGTGGCTA+TGG | 0.502207 | 7_3:-52806577 | Msa1109280:CDS |
| AACTCTACCACTTTCTGCTC+AGG | 0.502340 | 7_3:+52806841 | None:intergenic |
| CCAAATTGTGTTGTTGCTTG+GGG | 0.502858 | 7_3:+52806493 | None:intergenic |
| AGTTGATGATGAGGAAACAT+TGG | 0.505069 | 7_3:+52806297 | None:intergenic |
| CAAGTCCACTTCCAAACCCT+TGG | 0.519689 | 7_3:-52806914 | Msa1109280:CDS |
| GTTGATGATGAGGAAACATT+GGG | 0.520842 | 7_3:+52806298 | None:intergenic |
| TGATCAATGAAATTTCTTCG+AGG | 0.520979 | 7_3:+52806388 | None:intergenic |
| ATCACATACCGGGTTGCAAA+GGG | 0.522044 | 7_3:+52806532 | None:intergenic |
| ACCCCTCCATAGCCACCATA+AGG | 0.522093 | 7_3:+52806571 | None:intergenic |
| TGGCATTTGCATCACATACC+GGG | 0.531856 | 7_3:+52806522 | None:intergenic |
| TCTATCCTCATCATTTCCAA+TGG | 0.532227 | 7_3:+52807065 | None:intergenic |
| ATTTCCAATGGAAATTCTCT+CGG | 0.535410 | 7_3:+52807077 | None:intergenic |
| ACCTTATGGTGGCTATGGAG+GGG | 0.537456 | 7_3:-52806572 | Msa1109280:CDS |
| ATTAGAGTCGAAATCAAAGA+AGG | 0.542585 | 7_3:-52807010 | Msa1109280:CDS |
| CAAATACACCCTTTGCAACC+CGG | 0.543155 | 7_3:-52806540 | Msa1109280:CDS |
| GAATAGAGCTTGAAAACCAT+AGG | 0.547197 | 7_3:+52806689 | None:intergenic |
| TCAACATCAGATTCAGAGGT+TGG | 0.549087 | 7_3:+52806970 | None:intergenic |
| TAGCACTACGGAAATATGAA+TGG | 0.550571 | 7_3:+52806656 | None:intergenic |
| AACCTCTGAATCTGATGTTG+AGG | 0.555993 | 7_3:-52806968 | Msa1109280:CDS |
| ACCTCCAAGAGCTTGAGAAG+TGG | 0.556669 | 7_3:+52806789 | None:intergenic |
| AATGGAAGATAAAAGGAGAG+AGG | 0.557828 | 7_3:-52806728 | Msa1109280:CDS |
| TGAATGTCCACCGTTCTCCA+AGG | 0.561681 | 7_3:+52806897 | None:intergenic |
| CATCACATACCGGGTTGCAA+AGG | 0.564146 | 7_3:+52806531 | None:intergenic |
| AAGAGATGGATTCAACCCTA+TGG | 0.564603 | 7_3:-52806705 | Msa1109280:CDS |
| GAATGTCCACCGTTCTCCAA+GGG | 0.565536 | 7_3:+52806898 | None:intergenic |
| ACCTTTACCTGAGCAGAAAG+TGG | 0.574184 | 7_3:-52806848 | Msa1109280:CDS |
| TAAGGTGAACCGAGCCAAGA+AGG | 0.575815 | 7_3:+52806589 | None:intergenic |
| TGAACCGAGCCAAGAAGGAA+AGG | 0.582959 | 7_3:+52806594 | None:intergenic |
| GAGCCAAGAAGGAAAGGCAT+TGG | 0.584408 | 7_3:+52806600 | None:intergenic |
| ATGTCCGAGAGAATTTCCAT+TGG | 0.586763 | 7_3:-52807081 | Msa1109280:CDS |
| AATAGAGCTTGAAAACCATA+GGG | 0.593787 | 7_3:+52806690 | None:intergenic |
| ATCCTCAACATCAGATTCAG+AGG | 0.595365 | 7_3:+52806966 | None:intergenic |
| TCTCGTGATCCTAATAGAGA+AGG | 0.597683 | 7_3:-52806337 | Msa1109280:CDS |
| AATTTCCATTGGAAATGATG+AGG | 0.604935 | 7_3:-52807070 | Msa1109280:CDS |
| CCTCAAACGCAAAATGGTGG+AGG | 0.605406 | 7_3:-52807040 | Msa1109280:CDS |
| GATTTACTAACCCTAAGACT+TGG | 0.606458 | 7_3:-52806946 | Msa1109280:CDS |
| ACTTCCAAACCCTTGGAGAA+CGG | 0.610472 | 7_3:-52806907 | Msa1109280:CDS |
| TGGCTCGGTTCACCTTATGG+TGG | 0.610898 | 7_3:-52806583 | Msa1109280:CDS |
| AAACCTCAAACGCAAAATGG+TGG | 0.616518 | 7_3:-52807043 | Msa1109280:CDS |
| GGTTGTGCAAGTTAGCACTA+CGG | 0.648362 | 7_3:+52806644 | None:intergenic |
| CGTTGATTGAGTTGATGATG+AGG | 0.655857 | 7_3:+52806288 | None:intergenic |
| TCCAAACCCTTGGAGAACGG+TGG | 0.656704 | 7_3:-52806904 | Msa1109280:CDS |
| CTGCATTTCCAATTCCACAA+AGG | 0.667747 | 7_3:-52806438 | Msa1109280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAATGGAAGATAAA+AGG | - | chr7_3:52806631-52806650 | Msa1109280:CDS | 15.0% |
| !! | TAAAAAAAATGGAAGATAAA+AGG | - | chr7_3:52806631-52806650 | Msa1109280:CDS | 15.0% |
| !!! | TTTGATTTCGACTCTAATTT+TGG | + | chr7_3:52806354-52806373 | None:intergenic | 25.0% |
| ! | TGAACGTGTCTTAAAAAAAA+TGG | - | chr7_3:52806620-52806639 | Msa1109280:CDS | 25.0% |
| !!! | AATTTGGGATGACTAATTTT+TGG | - | chr7_3:52806889-52806908 | Msa1109280:CDS | 25.0% |
| !!! | ATTTGGGATGACTAATTTTT+GGG | - | chr7_3:52806890-52806909 | Msa1109280:CDS | 25.0% |
| !!! | TTTGATTTCGACTCTAATTT+TGG | + | chr7_3:52806354-52806373 | None:intergenic | 25.0% |
| ! | TGAACGTGTCTTAAAAAAAA+TGG | - | chr7_3:52806620-52806639 | Msa1109280:CDS | 25.0% |
| !!! | AATTTGGGATGACTAATTTT+TGG | - | chr7_3:52806889-52806908 | Msa1109280:CDS | 25.0% |
| !!! | ATTTGGGATGACTAATTTTT+GGG | - | chr7_3:52806890-52806909 | Msa1109280:CDS | 25.0% |
| ATTTCCAATGGAAATTCTCT+CGG | + | chr7_3:52806292-52806311 | None:intergenic | 30.0% | |
| AATTTCCATTGGAAATGATG+AGG | - | chr7_3:52806296-52806315 | Msa1109280:CDS | 30.0% | |
| ATTAGAGTCGAAATCAAAGA+AGG | - | chr7_3:52806356-52806375 | Msa1109280:CDS | 30.0% | |
| AATAGAGCTTGAAAACCATA+GGG | + | chr7_3:52806679-52806698 | None:intergenic | 30.0% | |
| !! | TTTGGGATGACTAATTTTTG+GGG | - | chr7_3:52806891-52806910 | Msa1109280:CDS | 30.0% |
| TGATCAATGAAATTTCTTCG+AGG | + | chr7_3:52806981-52807000 | None:intergenic | 30.0% | |
| TTAGGATCACGAGATAATAA+TGG | + | chr7_3:52807023-52807042 | None:intergenic | 30.0% | |
| TGAATTATGCCTTCTCTATT+AGG | + | chr7_3:52807041-52807060 | None:intergenic | 30.0% | |
| ! | TAATAGAGAAGGCATAATTC+AGG | - | chr7_3:52807040-52807059 | Msa1109280:CDS | 30.0% |
| ATTTCCAATGGAAATTCTCT+CGG | + | chr7_3:52806292-52806311 | None:intergenic | 30.0% | |
| AATTTCCATTGGAAATGATG+AGG | - | chr7_3:52806296-52806315 | Msa1109280:CDS | 30.0% | |
| ATTAGAGTCGAAATCAAAGA+AGG | - | chr7_3:52806356-52806375 | Msa1109280:CDS | 30.0% | |
| AATAGAGCTTGAAAACCATA+GGG | + | chr7_3:52806679-52806698 | None:intergenic | 30.0% | |
| !! | TTTGGGATGACTAATTTTTG+GGG | - | chr7_3:52806891-52806910 | Msa1109280:CDS | 30.0% |
| TGATCAATGAAATTTCTTCG+AGG | + | chr7_3:52806981-52807000 | None:intergenic | 30.0% | |
| TTAGGATCACGAGATAATAA+TGG | + | chr7_3:52807023-52807042 | None:intergenic | 30.0% | |
| TGAATTATGCCTTCTCTATT+AGG | + | chr7_3:52807041-52807060 | None:intergenic | 30.0% | |
| ! | TAATAGAGAAGGCATAATTC+AGG | - | chr7_3:52807040-52807059 | Msa1109280:CDS | 30.0% |
| TCTATCCTCATCATTTCCAA+TGG | + | chr7_3:52806304-52806323 | None:intergenic | 35.0% | |
| TAGAAACCTCAAACGCAAAA+TGG | - | chr7_3:52806320-52806339 | Msa1109280:CDS | 35.0% | |
| GATTTACTAACCCTAAGACT+TGG | - | chr7_3:52806420-52806439 | Msa1109280:CDS | 35.0% | |
| AATGGAAGATAAAAGGAGAG+AGG | - | chr7_3:52806638-52806657 | Msa1109280:CDS | 35.0% | |
| GAATAGAGCTTGAAAACCAT+AGG | + | chr7_3:52806680-52806699 | None:intergenic | 35.0% | |
| TCAAGCTCTATTCACTATCA+AGG | - | chr7_3:52806687-52806706 | Msa1109280:CDS | 35.0% | |
| TAGCACTACGGAAATATGAA+TGG | + | chr7_3:52806713-52806732 | None:intergenic | 35.0% | |
| !! | GTTGATGATGAGGAAACATT+GGG | + | chr7_3:52807071-52807090 | None:intergenic | 35.0% |
| !! | AGTTGATGATGAGGAAACAT+TGG | + | chr7_3:52807072-52807091 | None:intergenic | 35.0% |
| TCTATCCTCATCATTTCCAA+TGG | + | chr7_3:52806304-52806323 | None:intergenic | 35.0% | |
| TAGAAACCTCAAACGCAAAA+TGG | - | chr7_3:52806320-52806339 | Msa1109280:CDS | 35.0% | |
| GATTTACTAACCCTAAGACT+TGG | - | chr7_3:52806420-52806439 | Msa1109280:CDS | 35.0% | |
| AATGGAAGATAAAAGGAGAG+AGG | - | chr7_3:52806638-52806657 | Msa1109280:CDS | 35.0% | |
| GAATAGAGCTTGAAAACCAT+AGG | + | chr7_3:52806680-52806699 | None:intergenic | 35.0% | |
| TCAAGCTCTATTCACTATCA+AGG | - | chr7_3:52806687-52806706 | Msa1109280:CDS | 35.0% | |
| TAGCACTACGGAAATATGAA+TGG | + | chr7_3:52806713-52806732 | None:intergenic | 35.0% | |
| !! | GTTGATGATGAGGAAACATT+GGG | + | chr7_3:52807071-52807090 | None:intergenic | 35.0% |
| !! | AGTTGATGATGAGGAAACAT+TGG | + | chr7_3:52807072-52807091 | None:intergenic | 35.0% |
| ATGTCCGAGAGAATTTCCAT+TGG | - | chr7_3:52806285-52806304 | Msa1109280:CDS | 40.0% | |
| AAACCTCAAACGCAAAATGG+TGG | - | chr7_3:52806323-52806342 | Msa1109280:CDS | 40.0% | |
| TCAACATCAGATTCAGAGGT+TGG | + | chr7_3:52806399-52806418 | None:intergenic | 40.0% | |
| AACCTCTGAATCTGATGTTG+AGG | - | chr7_3:52806398-52806417 | Msa1109280:CDS | 40.0% | |
| ATCCTCAACATCAGATTCAG+AGG | + | chr7_3:52806403-52806422 | None:intergenic | 40.0% | |
| ! | GTTCACGCTTATGAGCATTT+TGG | + | chr7_3:52806605-52806624 | None:intergenic | 40.0% |
| TAAAAGGAGAGAGGAAGAGA+TGG | - | chr7_3:52806647-52806666 | Msa1109280:CDS | 40.0% | |
| ! | AAGAGATGGATTCAACCCTA+TGG | - | chr7_3:52806661-52806680 | Msa1109280:CDS | 40.0% |
| TCACATATTGGACGCCAATT+GGG | + | chr7_3:52806746-52806765 | None:intergenic | 40.0% | |
| !! | GAAAGGCATTGGTCACATAT+TGG | + | chr7_3:52806758-52806777 | None:intergenic | 40.0% |
| TTGGCATTTGCATCACATAC+CGG | + | chr7_3:52806848-52806867 | None:intergenic | 40.0% | |
| ! | CCAAATTGTGTTGTTGCTTG+GGG | + | chr7_3:52806876-52806895 | None:intergenic | 40.0% |
| ! | CCCAAATTGTGTTGTTGCTT+GGG | + | chr7_3:52806877-52806896 | None:intergenic | 40.0% |
| CCCAAGCAACAACACAATTT+GGG | - | chr7_3:52806874-52806893 | Msa1109280:CDS | 40.0% | |
| ! | TCCCAAATTGTGTTGTTGCT+TGG | + | chr7_3:52806878-52806897 | None:intergenic | 40.0% |
| !!! | ATGACTAATTTTTGGGGTGG+AGG | - | chr7_3:52806897-52806916 | Msa1109280:CDS | 40.0% |
| CTGCATTTCCAATTCCACAA+AGG | - | chr7_3:52806928-52806947 | Msa1109280:CDS | 40.0% | |
| GTGTTTGACCTTTGTGGAAT+TGG | + | chr7_3:52806939-52806958 | None:intergenic | 40.0% | |
| TCCACAAAGGTCAAACACTT+TGG | - | chr7_3:52806941-52806960 | Msa1109280:CDS | 40.0% | |
| CCACAAAGGTCAAACACTTT+GGG | - | chr7_3:52806942-52806961 | Msa1109280:CDS | 40.0% | |
| ! | AAGGTCAAACACTTTGGGTT+TGG | - | chr7_3:52806947-52806966 | Msa1109280:CDS | 40.0% |
| ! | AGGTCAAACACTTTGGGTTT+GGG | - | chr7_3:52806948-52806967 | Msa1109280:CDS | 40.0% |
| TCTCGTGATCCTAATAGAGA+AGG | - | chr7_3:52807029-52807048 | Msa1109280:CDS | 40.0% | |
| !! | CGTTGATTGAGTTGATGATG+AGG | + | chr7_3:52807081-52807100 | None:intergenic | 40.0% |
| ATGTCCGAGAGAATTTCCAT+TGG | - | chr7_3:52806285-52806304 | Msa1109280:CDS | 40.0% | |
| AAACCTCAAACGCAAAATGG+TGG | - | chr7_3:52806323-52806342 | Msa1109280:CDS | 40.0% | |
| TCAACATCAGATTCAGAGGT+TGG | + | chr7_3:52806399-52806418 | None:intergenic | 40.0% | |
| AACCTCTGAATCTGATGTTG+AGG | - | chr7_3:52806398-52806417 | Msa1109280:CDS | 40.0% | |
| ATCCTCAACATCAGATTCAG+AGG | + | chr7_3:52806403-52806422 | None:intergenic | 40.0% | |
| ! | GTTCACGCTTATGAGCATTT+TGG | + | chr7_3:52806605-52806624 | None:intergenic | 40.0% |
| TAAAAGGAGAGAGGAAGAGA+TGG | - | chr7_3:52806647-52806666 | Msa1109280:CDS | 40.0% | |
| ! | AAGAGATGGATTCAACCCTA+TGG | - | chr7_3:52806661-52806680 | Msa1109280:CDS | 40.0% |
| TCACATATTGGACGCCAATT+GGG | + | chr7_3:52806746-52806765 | None:intergenic | 40.0% | |
| !! | GAAAGGCATTGGTCACATAT+TGG | + | chr7_3:52806758-52806777 | None:intergenic | 40.0% |
| TTGGCATTTGCATCACATAC+CGG | + | chr7_3:52806848-52806867 | None:intergenic | 40.0% | |
| ! | CCAAATTGTGTTGTTGCTTG+GGG | + | chr7_3:52806876-52806895 | None:intergenic | 40.0% |
| ! | CCCAAATTGTGTTGTTGCTT+GGG | + | chr7_3:52806877-52806896 | None:intergenic | 40.0% |
| CCCAAGCAACAACACAATTT+GGG | - | chr7_3:52806874-52806893 | Msa1109280:CDS | 40.0% | |
| ! | TCCCAAATTGTGTTGTTGCT+TGG | + | chr7_3:52806878-52806897 | None:intergenic | 40.0% |
| !!! | ATGACTAATTTTTGGGGTGG+AGG | - | chr7_3:52806897-52806916 | Msa1109280:CDS | 40.0% |
| CTGCATTTCCAATTCCACAA+AGG | - | chr7_3:52806928-52806947 | Msa1109280:CDS | 40.0% | |
| GTGTTTGACCTTTGTGGAAT+TGG | + | chr7_3:52806939-52806958 | None:intergenic | 40.0% | |
| TCCACAAAGGTCAAACACTT+TGG | - | chr7_3:52806941-52806960 | Msa1109280:CDS | 40.0% | |
| CCACAAAGGTCAAACACTTT+GGG | - | chr7_3:52806942-52806961 | Msa1109280:CDS | 40.0% | |
| ! | AAGGTCAAACACTTTGGGTT+TGG | - | chr7_3:52806947-52806966 | Msa1109280:CDS | 40.0% |
| ! | AGGTCAAACACTTTGGGTTT+GGG | - | chr7_3:52806948-52806967 | Msa1109280:CDS | 40.0% |
| TCTCGTGATCCTAATAGAGA+AGG | - | chr7_3:52807029-52807048 | Msa1109280:CDS | 40.0% | |
| !! | CGTTGATTGAGTTGATGATG+AGG | + | chr7_3:52807081-52807100 | None:intergenic | 40.0% |
| ACTTCCAAACCCTTGGAGAA+CGG | - | chr7_3:52806459-52806478 | Msa1109280:CDS | 45.0% | |
| ACCTTTACCTGAGCAGAAAG+TGG | - | chr7_3:52806518-52806537 | Msa1109280:CDS | 45.0% | |
| ACCACTTTCTGCTCAGGTAA+AGG | + | chr7_3:52806522-52806541 | None:intergenic | 45.0% | |
| AACTCTACCACTTTCTGCTC+AGG | + | chr7_3:52806528-52806547 | None:intergenic | 45.0% | |
| TTCTCCACTTCTCAAGCTCT+TGG | - | chr7_3:52806573-52806592 | Msa1109280:CDS | 45.0% | |
| GGTTGTGCAAGTTAGCACTA+CGG | + | chr7_3:52806725-52806744 | None:intergenic | 45.0% | |
| ! | GCTAACTTGCACAACCCAAT+TGG | - | chr7_3:52806729-52806748 | Msa1109280:CDS | 45.0% |
| GTCACATATTGGACGCCAAT+TGG | + | chr7_3:52806747-52806766 | None:intergenic | 45.0% | |
| TGACCAATGCCTTTCCTTCT+TGG | - | chr7_3:52806763-52806782 | Msa1109280:CDS | 45.0% | |
| AATGCCTTTCCTTCTTGGCT+CGG | - | chr7_3:52806768-52806787 | Msa1109280:CDS | 45.0% | |
| CAAATACACCCTTTGCAACC+CGG | - | chr7_3:52806826-52806845 | Msa1109280:CDS | 45.0% | |
| ATCACATACCGGGTTGCAAA+GGG | + | chr7_3:52806837-52806856 | None:intergenic | 45.0% | |
| TGGCATTTGCATCACATACC+GGG | + | chr7_3:52806847-52806866 | None:intergenic | 45.0% | |
| ! | GTTGTTGCTTGGGGTGAATT+TGG | + | chr7_3:52806867-52806886 | None:intergenic | 45.0% |
| CCCCAAGCAACAACACAATT+TGG | - | chr7_3:52806873-52806892 | Msa1109280:CDS | 45.0% | |
| !! | GGGATGACTAATTTTTGGGG+TGG | - | chr7_3:52806894-52806913 | Msa1109280:CDS | 45.0% |
| ! | CCCAAAGTGTTTGACCTTTG+TGG | + | chr7_3:52806945-52806964 | None:intergenic | 45.0% |
| ACTTCCAAACCCTTGGAGAA+CGG | - | chr7_3:52806459-52806478 | Msa1109280:CDS | 45.0% | |
| ACCTTTACCTGAGCAGAAAG+TGG | - | chr7_3:52806518-52806537 | Msa1109280:CDS | 45.0% | |
| ACCACTTTCTGCTCAGGTAA+AGG | + | chr7_3:52806522-52806541 | None:intergenic | 45.0% | |
| AACTCTACCACTTTCTGCTC+AGG | + | chr7_3:52806528-52806547 | None:intergenic | 45.0% | |
| TTCTCCACTTCTCAAGCTCT+TGG | - | chr7_3:52806573-52806592 | Msa1109280:CDS | 45.0% | |
| GGTTGTGCAAGTTAGCACTA+CGG | + | chr7_3:52806725-52806744 | None:intergenic | 45.0% | |
| ! | GCTAACTTGCACAACCCAAT+TGG | - | chr7_3:52806729-52806748 | Msa1109280:CDS | 45.0% |
| GTCACATATTGGACGCCAAT+TGG | + | chr7_3:52806747-52806766 | None:intergenic | 45.0% | |
| TGACCAATGCCTTTCCTTCT+TGG | - | chr7_3:52806763-52806782 | Msa1109280:CDS | 45.0% | |
| AATGCCTTTCCTTCTTGGCT+CGG | - | chr7_3:52806768-52806787 | Msa1109280:CDS | 45.0% | |
| CAAATACACCCTTTGCAACC+CGG | - | chr7_3:52806826-52806845 | Msa1109280:CDS | 45.0% | |
| ATCACATACCGGGTTGCAAA+GGG | + | chr7_3:52806837-52806856 | None:intergenic | 45.0% | |
| TGGCATTTGCATCACATACC+GGG | + | chr7_3:52806847-52806866 | None:intergenic | 45.0% | |
| ! | GTTGTTGCTTGGGGTGAATT+TGG | + | chr7_3:52806867-52806886 | None:intergenic | 45.0% |
| CCCCAAGCAACAACACAATT+TGG | - | chr7_3:52806873-52806892 | Msa1109280:CDS | 45.0% | |
| !! | GGGATGACTAATTTTTGGGG+TGG | - | chr7_3:52806894-52806913 | Msa1109280:CDS | 45.0% |
| ! | CCCAAAGTGTTTGACCTTTG+TGG | + | chr7_3:52806945-52806964 | None:intergenic | 45.0% |
| ! | CCTCCACCATTTTGCGTTTG+AGG | + | chr7_3:52806329-52806348 | None:intergenic | 50.0% |
| CCTCAAACGCAAAATGGTGG+AGG | - | chr7_3:52806326-52806345 | Msa1109280:CDS | 50.0% | |
| GGTGTGAGTGCCAAGTCTTA+GGG | + | chr7_3:52806433-52806452 | None:intergenic | 50.0% | |
| TGGTGTGAGTGCCAAGTCTT+AGG | + | chr7_3:52806434-52806453 | None:intergenic | 50.0% | |
| ! | CAAGGGTTTGGAAGTGGACT+TGG | + | chr7_3:52806454-52806473 | None:intergenic | 50.0% |
| CAAGTCCACTTCCAAACCCT+TGG | - | chr7_3:52806452-52806471 | Msa1109280:CDS | 50.0% | |
| GTTCTCCAAGGGTTTGGAAG+TGG | + | chr7_3:52806460-52806479 | None:intergenic | 50.0% | |
| GAATGTCCACCGTTCTCCAA+GGG | + | chr7_3:52806471-52806490 | None:intergenic | 50.0% | |
| TGAATGTCCACCGTTCTCCA+AGG | + | chr7_3:52806472-52806491 | None:intergenic | 50.0% | |
| TCCACTTCTCAAGCTCTTGG+AGG | - | chr7_3:52806576-52806595 | Msa1109280:CDS | 50.0% | |
| ACCTCCAAGAGCTTGAGAAG+TGG | + | chr7_3:52806580-52806599 | None:intergenic | 50.0% | |
| ! | GAGCCAAGAAGGAAAGGCAT+TGG | + | chr7_3:52806769-52806788 | None:intergenic | 50.0% |
| TGAACCGAGCCAAGAAGGAA+AGG | + | chr7_3:52806775-52806794 | None:intergenic | 50.0% | |
| TAAGGTGAACCGAGCCAAGA+AGG | + | chr7_3:52806780-52806799 | None:intergenic | 50.0% | |
| !! | TCTTGGCTCGGTTCACCTTA+TGG | - | chr7_3:52806780-52806799 | Msa1109280:CDS | 50.0% |
| GGTTCACCTTATGGTGGCTA+TGG | - | chr7_3:52806789-52806808 | Msa1109280:CDS | 50.0% | |
| TCACCTTATGGTGGCTATGG+AGG | - | chr7_3:52806792-52806811 | Msa1109280:CDS | 50.0% | |
| CACCTTATGGTGGCTATGGA+GGG | - | chr7_3:52806793-52806812 | Msa1109280:CDS | 50.0% | |
| ACCTTATGGTGGCTATGGAG+GGG | - | chr7_3:52806794-52806813 | Msa1109280:CDS | 50.0% | |
| ! | CGGGTTGCAAAGGGTGTATT+TGG | + | chr7_3:52806828-52806847 | None:intergenic | 50.0% |
| CATCACATACCGGGTTGCAA+AGG | + | chr7_3:52806838-52806857 | None:intergenic | 50.0% | |
| ! | CCTCCACCATTTTGCGTTTG+AGG | + | chr7_3:52806329-52806348 | None:intergenic | 50.0% |
| CCTCAAACGCAAAATGGTGG+AGG | - | chr7_3:52806326-52806345 | Msa1109280:CDS | 50.0% | |
| GGTGTGAGTGCCAAGTCTTA+GGG | + | chr7_3:52806433-52806452 | None:intergenic | 50.0% | |
| TGGTGTGAGTGCCAAGTCTT+AGG | + | chr7_3:52806434-52806453 | None:intergenic | 50.0% | |
| ! | CAAGGGTTTGGAAGTGGACT+TGG | + | chr7_3:52806454-52806473 | None:intergenic | 50.0% |
| CAAGTCCACTTCCAAACCCT+TGG | - | chr7_3:52806452-52806471 | Msa1109280:CDS | 50.0% | |
| GTTCTCCAAGGGTTTGGAAG+TGG | + | chr7_3:52806460-52806479 | None:intergenic | 50.0% | |
| GAATGTCCACCGTTCTCCAA+GGG | + | chr7_3:52806471-52806490 | None:intergenic | 50.0% | |
| TGAATGTCCACCGTTCTCCA+AGG | + | chr7_3:52806472-52806491 | None:intergenic | 50.0% | |
| TCCACTTCTCAAGCTCTTGG+AGG | - | chr7_3:52806576-52806595 | Msa1109280:CDS | 50.0% | |
| ACCTCCAAGAGCTTGAGAAG+TGG | + | chr7_3:52806580-52806599 | None:intergenic | 50.0% | |
| ! | GAGCCAAGAAGGAAAGGCAT+TGG | + | chr7_3:52806769-52806788 | None:intergenic | 50.0% |
| TGAACCGAGCCAAGAAGGAA+AGG | + | chr7_3:52806775-52806794 | None:intergenic | 50.0% | |
| TAAGGTGAACCGAGCCAAGA+AGG | + | chr7_3:52806780-52806799 | None:intergenic | 50.0% | |
| !! | TCTTGGCTCGGTTCACCTTA+TGG | - | chr7_3:52806780-52806799 | Msa1109280:CDS | 50.0% |
| GGTTCACCTTATGGTGGCTA+TGG | - | chr7_3:52806789-52806808 | Msa1109280:CDS | 50.0% | |
| TCACCTTATGGTGGCTATGG+AGG | - | chr7_3:52806792-52806811 | Msa1109280:CDS | 50.0% | |
| CACCTTATGGTGGCTATGGA+GGG | - | chr7_3:52806793-52806812 | Msa1109280:CDS | 50.0% | |
| ACCTTATGGTGGCTATGGAG+GGG | - | chr7_3:52806794-52806813 | Msa1109280:CDS | 50.0% | |
| ! | CGGGTTGCAAAGGGTGTATT+TGG | + | chr7_3:52806828-52806847 | None:intergenic | 50.0% |
| CATCACATACCGGGTTGCAA+AGG | + | chr7_3:52806838-52806857 | None:intergenic | 50.0% | |
| TCCAAACCCTTGGAGAACGG+TGG | - | chr7_3:52806462-52806481 | Msa1109280:CDS | 55.0% | |
| TCCACCGTTCTCCAAGGGTT+TGG | + | chr7_3:52806466-52806485 | None:intergenic | 55.0% | |
| !! | TGGCTCGGTTCACCTTATGG+TGG | - | chr7_3:52806783-52806802 | Msa1109280:CDS | 55.0% |
| ACCCCTCCATAGCCACCATA+AGG | + | chr7_3:52806798-52806817 | None:intergenic | 55.0% | |
| TCCAAACCCTTGGAGAACGG+TGG | - | chr7_3:52806462-52806481 | Msa1109280:CDS | 55.0% | |
| TCCACCGTTCTCCAAGGGTT+TGG | + | chr7_3:52806466-52806485 | None:intergenic | 55.0% | |
| !! | TGGCTCGGTTCACCTTATGG+TGG | - | chr7_3:52806783-52806802 | Msa1109280:CDS | 55.0% |
| ACCCCTCCATAGCCACCATA+AGG | + | chr7_3:52806798-52806817 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 52806285 | 52807103 | 52806285 | ID=Msa1109280;Name=Msa1109280 |
| chr7_3 | mRNA | 52806285 | 52807103 | 52806285 | ID=Msa1109280-mRNA-1;Parent=Msa1109280;Name=Msa1109280-mRNA-1;_AED=0.56;_eAED=0.57;_QI=0|-1|0|1|-1|1|1|0|272 |
| chr7_3 | exon | 52806285 | 52807103 | 52806285 | ID=Msa1109280-mRNA-1:exon:11142;Parent=Msa1109280-mRNA-1 |
| chr7_3 | CDS | 52806285 | 52807103 | 52806285 | ID=Msa1109280-mRNA-1:cds;Parent=Msa1109280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
