AlfalfaGEDB | Msa1109280

M. sativa cultivar zhongmu-4 / Msa1109280

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1109280	XP_024626741.1	91.176	272	23	1	1	272	1	271	0.0	510

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1109280	A0A2Z6NVK6	51.735	317	97	8	1	264	1	314	4.21e-88	275

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TFs/TRs:

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Gene ID	Type	Classification
Msa1109280	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1109280	MtrunA17_Chr7g0255491	60.159	251	72	5	20	243	1	250	5.10e-83	250
Msa1109280	MtrunA17_Chr1g0149811	39.200	125	61	5	63	179	76	193	1.40e-12	66.2
Msa1109280	MtrunA17_Chr7g0239711	68.421	38	12	0	83	120	54	91	5.44e-12	63.5
Msa1109280	MtrunA17_Chr3g0081131	43.678	87	32	3	67	146	72	148	1.50e-11	63.5
Msa1109280	MtrunA17_Chr3g0081141	49.254	67	27	1	66	125	71	137	1.62e-11	63.5
Msa1109280	MtrunA17_Chr7g0250871	33.803	142	69	7	73	207	38	161	4.43e-11	60.5
Msa1109280	MtrunA17_Chr7g0224221	36.111	108	60	2	26	126	83	188	4.59e-11	62.4
Msa1109280	MtrunA17_Chr8g0376021	77.419	31	7	0	88	118	64	94	7.71e-11	60.5
Msa1109280	MtrunA17_Chr3g0110091	71.795	39	9	1	80	118	82	118	8.04e-11	60.8
Msa1109280	MtrunA17_Chr3g0081121	43.678	87	27	5	86	172	98	162	9.71e-11	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1109280	AT5G10970.1	39.837	123	48	6	63	179	84	186	1.33e-11	63.9
Msa1109280	AT5G25160.1	41.837	98	48	4	82	179	57	145	1.76e-11	63.2
Msa1109280	AT1G80730.1	68.293	41	11	1	78	118	60	98	5.34e-11	61.6

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Find 81 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCAAACGCAAAATGG+TGG	0.616518	7_3:-52807043	Msa1109280:CDS
AACCTCTGAATCTGATGTTG+AGG	0.555993	7_3:-52806968	Msa1109280:CDS
AACTCTACCACTTTCTGCTC+AGG	0.502340	7_3:+52806841	None:intergenic
AAGAGATGGATTCAACCCTA+TGG	0.564603	7_3:-52806705	Msa1109280:CDS
AAGGTCAAACACTTTGGGTT+TGG	0.344659	7_3:-52806419	Msa1109280:CDS
AATAGAGCTTGAAAACCATA+GGG	0.593787	7_3:+52806690	None:intergenic
AATGCCTTTCCTTCTTGGCT+CGG	0.453136	7_3:-52806598	Msa1109280:CDS
AATGGAAGATAAAAGGAGAG+AGG	0.557828	7_3:-52806728	Msa1109280:CDS
AATTTCCATTGGAAATGATG+AGG	0.604935	7_3:-52807070	Msa1109280:CDS
ACCACTTTCTGCTCAGGTAA+AGG	0.442903	7_3:+52806847	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTCCAATGGAAATTCTCT+CGG	+	chr7_3:52806292-52806311	None:intergenic	30.0%
AATTTCCATTGGAAATGATG+AGG	-	chr7_3:52806296-52806315	Msa1109280:CDS	30.0%
ATTAGAGTCGAAATCAAAGA+AGG	-	chr7_3:52806356-52806375	Msa1109280:CDS	30.0%
AATAGAGCTTGAAAACCATA+GGG	+	chr7_3:52806679-52806698	None:intergenic	30.0%
TGATCAATGAAATTTCTTCG+AGG	+	chr7_3:52806981-52807000	None:intergenic	30.0%
TTAGGATCACGAGATAATAA+TGG	+	chr7_3:52807023-52807042	None:intergenic	30.0%
TGAATTATGCCTTCTCTATT+AGG	+	chr7_3:52807041-52807060	None:intergenic	30.0%
ATTTCCAATGGAAATTCTCT+CGG	+	chr7_3:52806292-52806311	None:intergenic	30.0%
AATTTCCATTGGAAATGATG+AGG	-	chr7_3:52806296-52806315	Msa1109280:CDS	30.0%
ATTAGAGTCGAAATCAAAGA+AGG	-	chr7_3:52806356-52806375	Msa1109280:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	52806285	52807103	52806285	ID=Msa1109280;Name=Msa1109280
chr7_3	mRNA	52806285	52807103	52806285	ID=Msa1109280-mRNA-1;Parent=Msa1109280;Name=Msa1109280-mRNA-1;_AED=0.56;_eAED=0.57;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|272
chr7_3	exon	52806285	52807103	52806285	ID=Msa1109280-mRNA-1:exon:11142;Parent=Msa1109280-mRNA-1
chr7_3	CDS	52806285	52807103	52806285	ID=Msa1109280-mRNA-1:cds;Parent=Msa1109280-mRNA-1

Gene Sequence

>Msa1109280

ATGTCCGAGAGAATTTCCATTGGAAATGATGAGGATAGAAACCTCAAACGCAAAATGGTGGAGGAGCCAAAATTAGAGTCGAAATCAAAGAAGGAGTCAAAGACAATGACACCAACCTCTGAATCTGATGTTGAGGATTTACTAACCCTAAGACTTGGCACTCACACCAAGTCCACTTCCAAACCCTTGGAGAACGGTGGACATTCAAGTTCATTTCAAAACACTACTGATGAACCTTTACCTGAGCAGAAAGTGGTAGAGTTCTCTTGTAATTATTGTGACAAGAAATTCTCCACTTCTCAAGCTCTTGGAGGTCACCAAAATGCTCATAAGCGTGAACGTGTCTTAAAAAAAATGGAAGATAAAAGGAGAGAGGAAGAGATGGATTCAACCCTATGGTTTTCAAGCTCTATTCACTATCAAGGCCATTCATATTTCCGTAGTGCTAACTTGCACAACCCAATTGGCGTCCAATATGTGACCAATGCCTTTCCTTCTTGGCTCGGTTCACCTTATGGTGGCTATGGAGGGGTGTATATGCCAAATACACCCTTTGCAACCCGGTATGTGATGCAAATGCCAAATTCACCCCAAGCAACAACACAATTTGGGATGACTAATTTTTGGGGTGGAGGTCAAAATGCTGCATTTCCAATTCCACAAAGGTCAAACACTTTGGGTTTGGGACTTTTTCCTCGAAGAAATTTCATTGATCAACTTCGTTCTCATACTCTTCCATTATTATCTCGTGATCCTAATAGAGAAGGCATAATTCAGGCAAATCCCAATGTTTCCTCATCATCAACTCAATCAACGTAG

Protein sequence

>Msa1109280

MSERISIGNDEDRNLKRKMVEEPKLESKSKKESKTMTPTSESDVEDLLTLRLGTHTKSTSKPLENGGHSSSFQNTTDEPLPEQKVVEFSCNYCDKKFSTSQALGGHQNAHKRERVLKKMEDKRREEEMDSTLWFSSSIHYQGHSYFRSANLHNPIGVQYVTNAFPSWLGSPYGGYGGVYMPNTPFATRYVMQMPNSPQATTQFGMTNFWGGGQNAAFPIPQRSNTLGLGLFPRRNFIDQLRSHTLPLLSRDPNREGIIQANPNVSSSSTQST*