Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1109290 | XP_024626741.1 | 90.775 | 271 | 25 | 0 | 1 | 271 | 1 | 271 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1109290 | A0A2Z6NVK6 | 51.582 | 316 | 98 | 7 | 1 | 263 | 1 | 314 | 3.59e-89 | 277 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1109290 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1109290 | MtrunA17_Chr7g0255491 | 60.400 | 250 | 72 | 4 | 20 | 242 | 1 | 250 | 8.29e-85 | 254 |
| Msa1109290 | MtrunA17_Chr1g0149811 | 35.374 | 147 | 67 | 6 | 63 | 209 | 76 | 194 | 3.54e-12 | 65.1 |
| Msa1109290 | MtrunA17_Chr7g0239711 | 68.421 | 38 | 12 | 0 | 83 | 120 | 54 | 91 | 4.92e-12 | 63.9 |
| Msa1109290 | MtrunA17_Chr3g0081131 | 45.977 | 87 | 30 | 4 | 67 | 146 | 72 | 148 | 1.20e-11 | 63.9 |
| Msa1109290 | MtrunA17_Chr3g0081141 | 49.254 | 67 | 27 | 1 | 66 | 125 | 71 | 137 | 1.43e-11 | 63.5 |
| Msa1109290 | MtrunA17_Chr7g0224221 | 36.111 | 108 | 60 | 2 | 26 | 126 | 83 | 188 | 4.09e-11 | 62.4 |
| Msa1109290 | MtrunA17_Chr3g0110091 | 71.795 | 39 | 9 | 1 | 80 | 118 | 82 | 118 | 6.31e-11 | 60.8 |
| Msa1109290 | MtrunA17_Chr4g0001081 | 31.034 | 145 | 80 | 4 | 88 | 228 | 69 | 197 | 6.59e-11 | 60.8 |
| Msa1109290 | MtrunA17_Chr8g0376021 | 77.419 | 31 | 7 | 0 | 88 | 118 | 64 | 94 | 6.72e-11 | 60.5 |
| Msa1109290 | MtrunA17_Chr5g0434121 | 80.645 | 31 | 6 | 0 | 88 | 118 | 89 | 119 | 8.75e-11 | 60.5 |
| Msa1109290 | MtrunA17_Chr4g0072571 | 56.863 | 51 | 15 | 2 | 82 | 132 | 43 | 86 | 9.13e-11 | 59.3 |
| Msa1109290 | MtrunA17_Chr2g0333741 | 31.081 | 148 | 89 | 4 | 88 | 228 | 83 | 224 | 9.51e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1109290 | AT5G10970.1 | 41.935 | 124 | 43 | 7 | 63 | 178 | 84 | 186 | 4.65e-12 | 65.1 |
| Msa1109290 | AT5G25160.1 | 40.206 | 97 | 50 | 3 | 82 | 178 | 57 | 145 | 4.58e-11 | 61.6 |
| Msa1109290 | AT1G80730.1 | 68.293 | 41 | 11 | 1 | 78 | 118 | 60 | 98 | 4.79e-11 | 61.6 |
Find 80 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATTTCGACTCTAATTT+TGG | 0.159297 | 7_3:+52811035 | None:intergenic |
| TGAATTATGCCTTCTCTATT+AGG | 0.177692 | 7_3:+52810351 | None:intergenic |
| CCCCAAGCAACAACACAATT+TGG | 0.187401 | 7_3:-52810516 | Msa1109290:CDS |
| TGGTGTGAGTGCCAAGTCTT+AGG | 0.231168 | 7_3:+52810955 | None:intergenic |
| CCCAAATTGTGTTGTTGCTT+GGG | 0.273537 | 7_3:+52810515 | None:intergenic |
| GTTGTTGCTTGGGGTGAATT+TGG | 0.275394 | 7_3:+52810525 | None:intergenic |
| CCCAAAGTGTTTGACCTTTG+TGG | 0.277762 | 7_3:+52810447 | None:intergenic |
| AGGTCAAACACTTTGGGTTT+TGG | 0.290151 | 7_3:-52810441 | Msa1109290:CDS |
| CAGGTTGCAAGGGGTGTATT+TGG | 0.297330 | 7_3:+52810564 | None:intergenic |
| GTTCACGCTTATGAGCATTT+TGG | 0.317761 | 7_3:+52810784 | None:intergenic |
| CCACAAAGGTCAAACACTTT+GGG | 0.340923 | 7_3:-52810447 | Msa1109290:CDS |
| TTGGTCACATGGGCGCCAAT+TGG | 0.347934 | 7_3:+52810642 | None:intergenic |
| CAAGGGTTTGGAAGTGGACT+TGG | 0.360530 | 7_3:+52810935 | None:intergenic |
| GTGTTTGACCTTTGTGGAAT+TGG | 0.364677 | 7_3:+52810453 | None:intergenic |
| TCCCAAATTGTGTTGTTGCT+TGG | 0.377648 | 7_3:+52810514 | None:intergenic |
| TTCTCCACTTCTCAAGCTCT+TGG | 0.384550 | 7_3:-52810813 | Msa1109290:CDS |
| TAGAAACCTCAAACGCAAAA+TGG | 0.385914 | 7_3:-52811066 | Msa1109290:CDS |
| TCCACCGTTCTCCAAGGGTT+TGG | 0.389944 | 7_3:+52810923 | None:intergenic |
| GCTTGGCTCGGTTCACCATA+TGG | 0.400606 | 7_3:-52810609 | Msa1109290:CDS |
| TAATAGAGAAGGCATAATTC+AGG | 0.407241 | 7_3:-52810349 | Msa1109290:CDS |
| CCCAAGCAACAACACAATTT+GGG | 0.410223 | 7_3:-52810515 | Msa1109290:CDS |
| TCCACAAAGGTCAAACACTT+TGG | 0.411221 | 7_3:-52810448 | Msa1109290:CDS |
| CACCATATGGTGGCTATGGA+GGG | 0.414143 | 7_3:-52810596 | Msa1109290:CDS |
| TGACCAATGTCTTTCCTGCT+TGG | 0.417465 | 7_3:-52810626 | Msa1109290:CDS |
| TTAGGATCACGAGATAATAA+TGG | 0.420098 | 7_3:+52810369 | None:intergenic |
| TGGTCACATGGGCGCCAATT+GGG | 0.428506 | 7_3:+52810643 | None:intergenic |
| ACCACTTTCTGCTCAGGTAA+AGG | 0.442903 | 7_3:+52810867 | None:intergenic |
| TCAAGCTCTATTCACTATCA+AGG | 0.445678 | 7_3:-52810699 | Msa1109290:CDS |
| AATGTCTTTCCTGCTTGGCT+CGG | 0.451878 | 7_3:-52810621 | Msa1109290:CDS |
| TGATCAATGAAATTTCTTTG+AGG | 0.466939 | 7_3:+52810411 | None:intergenic |
| GTTCTCCAAGGGTTTGGAAG+TGG | 0.473154 | 7_3:+52810929 | None:intergenic |
| TCCACTTCTCAAGCTCTTGG+AGG | 0.477317 | 7_3:-52810810 | Msa1109290:CDS |
| TCACCATATGGTGGCTATGG+AGG | 0.477975 | 7_3:-52810597 | Msa1109290:CDS |
| GCTAACTTGCACAACCCAAT+TGG | 0.486494 | 7_3:-52810657 | Msa1109290:CDS |
| ACCCCTCCATAGCCACCATA+TGG | 0.490038 | 7_3:+52810594 | None:intergenic |
| GGTGTGAGTGCCAAGTCTTA+GGG | 0.491546 | 7_3:+52810956 | None:intergenic |
| GGTTCACCATATGGTGGCTA+TGG | 0.499351 | 7_3:-52810600 | Msa1109290:CDS |
| TAAAAGGAGAGAGGAAGAGA+TGG | 0.501837 | 7_3:-52810739 | Msa1109290:CDS |
| AACTCTACCACTTTCTGCTC+AGG | 0.502340 | 7_3:+52810861 | None:intergenic |
| CCAAATTGTGTTGTTGCTTG+GGG | 0.502858 | 7_3:+52810516 | None:intergenic |
| CAAATACACCCCTTGCAACC+TGG | 0.503232 | 7_3:-52810563 | Msa1109290:CDS |
| TGGCATTTGCATCACATACC+AGG | 0.518397 | 7_3:+52810545 | None:intergenic |
| CAAGTCCACTTCCAAACCCT+TGG | 0.519689 | 7_3:-52810934 | Msa1109290:CDS |
| GTTGATGATGAGGACACATT+GGG | 0.531489 | 7_3:+52810321 | None:intergenic |
| TCTATCCTCATCATTTCCAA+TGG | 0.532227 | 7_3:+52811085 | None:intergenic |
| CAGGAAAGACATTGGTCACA+TGG | 0.533199 | 7_3:+52810631 | None:intergenic |
| ATTTCCAATGGAAATTCTCT+CGG | 0.535410 | 7_3:+52811097 | None:intergenic |
| TATGGTGAACCGAGCCAAGC+AGG | 0.538944 | 7_3:+52810612 | None:intergenic |
| GCATCACATACCAGGTTGCA+AGG | 0.542521 | 7_3:+52810553 | None:intergenic |
| ATTAGAGTCGAAATCAAAGA+AGG | 0.542585 | 7_3:-52811030 | Msa1109290:CDS |
| GAATAGAGCTTGAAAACCAT+AGG | 0.547197 | 7_3:+52810709 | None:intergenic |
| TCAACATCAGATTCAGAGGT+TGG | 0.549087 | 7_3:+52810990 | None:intergenic |
| TAGCACTACGGAAATATGAA+TGG | 0.550571 | 7_3:+52810676 | None:intergenic |
| ACCATATGGTGGCTATGGAG+GGG | 0.551080 | 7_3:-52810595 | Msa1109290:CDS |
| AACCTCTGAATCTGATGTTG+AGG | 0.555993 | 7_3:-52810988 | Msa1109290:CDS |
| ACCTCCAAGAGCTTGAGAAG+TGG | 0.556669 | 7_3:+52810809 | None:intergenic |
| AATGGAAGATAAAAGGAGAG+AGG | 0.557828 | 7_3:-52810748 | Msa1109290:CDS |
| TGAATGTCCACCGTTCTCCA+AGG | 0.561681 | 7_3:+52810917 | None:intergenic |
| AAGAGATGGATTCAACCCTA+TGG | 0.564603 | 7_3:-52810725 | Msa1109290:CDS |
| GAATGTCCACCGTTCTCCAA+GGG | 0.565536 | 7_3:+52810918 | None:intergenic |
| ACCTTTACCTGAGCAGAAAG+TGG | 0.574184 | 7_3:-52810868 | Msa1109290:CDS |
| ATGTCCGAGAGAATTTCCAT+TGG | 0.586763 | 7_3:-52811101 | Msa1109290:CDS |
| CATCACATACCAGGTTGCAA+GGG | 0.588137 | 7_3:+52810554 | None:intergenic |
| AATAGAGCTTGAAAACCATA+GGG | 0.593787 | 7_3:+52810710 | None:intergenic |
| ATCCTCAACATCAGATTCAG+AGG | 0.595365 | 7_3:+52810986 | None:intergenic |
| AGTTGATGATGAGGACACAT+TGG | 0.595890 | 7_3:+52810320 | None:intergenic |
| TCTCGTGATCCTAATAGAGA+AGG | 0.597683 | 7_3:-52810360 | Msa1109290:CDS |
| AATTTCCATTGGAAATGATG+AGG | 0.604935 | 7_3:-52811090 | Msa1109290:CDS |
| CCTCAAACGCAAAATGGTGG+AGG | 0.605406 | 7_3:-52811060 | Msa1109290:CDS |
| GATTTACTAACCCTAAGACT+TGG | 0.606458 | 7_3:-52810966 | Msa1109290:CDS |
| ACTTCCAAACCCTTGGAGAA+CGG | 0.610472 | 7_3:-52810927 | Msa1109290:CDS |
| AAACCTCAAACGCAAAATGG+TGG | 0.616518 | 7_3:-52811063 | Msa1109290:CDS |
| GGTTGTGCAAGTTAGCACTA+CGG | 0.648362 | 7_3:+52810664 | None:intergenic |
| TCCAAACCCTTGGAGAACGG+TGG | 0.656704 | 7_3:-52810924 | Msa1109290:CDS |
| GAGCCAAGCAGGAAAGACAT+TGG | 0.656849 | 7_3:+52810623 | None:intergenic |
| ATCACATACCAGGTTGCAAG+GGG | 0.662631 | 7_3:+52810555 | None:intergenic |
| AGGAAAGACATTGGTCACAT+GGG | 0.665048 | 7_3:+52810632 | None:intergenic |
| TGGCTCGGTTCACCATATGG+TGG | 0.670478 | 7_3:-52810606 | Msa1109290:CDS |
| GGTTGATTGAGTTGATGATG+AGG | 0.677458 | 7_3:+52810311 | None:intergenic |
| CTGCATTGCCAATTCCACAA+AGG | 0.690145 | 7_3:-52810461 | Msa1109290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAATGGAAGATAAA+AGG | - | chr7_3:52810654-52810673 | Msa1109290:CDS | 15.0% |
| !! | TAAAAAAAATGGAAGATAAA+AGG | - | chr7_3:52810654-52810673 | Msa1109290:CDS | 15.0% |
| !!! | TTTGATTTCGACTCTAATTT+TGG | + | chr7_3:52810377-52810396 | None:intergenic | 25.0% |
| ! | TGAACGTGTCTTAAAAAAAA+TGG | - | chr7_3:52810643-52810662 | Msa1109290:CDS | 25.0% |
| !!! | AATTTGGGATGACTAATTTT+TGG | - | chr7_3:52810909-52810928 | Msa1109290:CDS | 25.0% |
| !!! | ATTTGGGATGACTAATTTTT+GGG | - | chr7_3:52810910-52810929 | Msa1109290:CDS | 25.0% |
| ! | TGATCAATGAAATTTCTTTG+AGG | + | chr7_3:52811001-52811020 | None:intergenic | 25.0% |
| !!! | TTTGATTTCGACTCTAATTT+TGG | + | chr7_3:52810377-52810396 | None:intergenic | 25.0% |
| ! | TGAACGTGTCTTAAAAAAAA+TGG | - | chr7_3:52810643-52810662 | Msa1109290:CDS | 25.0% |
| !!! | AATTTGGGATGACTAATTTT+TGG | - | chr7_3:52810909-52810928 | Msa1109290:CDS | 25.0% |
| !!! | ATTTGGGATGACTAATTTTT+GGG | - | chr7_3:52810910-52810929 | Msa1109290:CDS | 25.0% |
| ! | TGATCAATGAAATTTCTTTG+AGG | + | chr7_3:52811001-52811020 | None:intergenic | 25.0% |
| ATTTCCAATGGAAATTCTCT+CGG | + | chr7_3:52810315-52810334 | None:intergenic | 30.0% | |
| AATTTCCATTGGAAATGATG+AGG | - | chr7_3:52810319-52810338 | Msa1109290:CDS | 30.0% | |
| ATTAGAGTCGAAATCAAAGA+AGG | - | chr7_3:52810379-52810398 | Msa1109290:CDS | 30.0% | |
| AATAGAGCTTGAAAACCATA+GGG | + | chr7_3:52810702-52810721 | None:intergenic | 30.0% | |
| !! | TTTGGGATGACTAATTTTTG+GGG | - | chr7_3:52810911-52810930 | Msa1109290:CDS | 30.0% |
| TTAGGATCACGAGATAATAA+TGG | + | chr7_3:52811043-52811062 | None:intergenic | 30.0% | |
| TGAATTATGCCTTCTCTATT+AGG | + | chr7_3:52811061-52811080 | None:intergenic | 30.0% | |
| ! | TAATAGAGAAGGCATAATTC+AGG | - | chr7_3:52811060-52811079 | Msa1109290:CDS | 30.0% |
| ATTTCCAATGGAAATTCTCT+CGG | + | chr7_3:52810315-52810334 | None:intergenic | 30.0% | |
| AATTTCCATTGGAAATGATG+AGG | - | chr7_3:52810319-52810338 | Msa1109290:CDS | 30.0% | |
| ATTAGAGTCGAAATCAAAGA+AGG | - | chr7_3:52810379-52810398 | Msa1109290:CDS | 30.0% | |
| AATAGAGCTTGAAAACCATA+GGG | + | chr7_3:52810702-52810721 | None:intergenic | 30.0% | |
| !! | TTTGGGATGACTAATTTTTG+GGG | - | chr7_3:52810911-52810930 | Msa1109290:CDS | 30.0% |
| TTAGGATCACGAGATAATAA+TGG | + | chr7_3:52811043-52811062 | None:intergenic | 30.0% | |
| TGAATTATGCCTTCTCTATT+AGG | + | chr7_3:52811061-52811080 | None:intergenic | 30.0% | |
| ! | TAATAGAGAAGGCATAATTC+AGG | - | chr7_3:52811060-52811079 | Msa1109290:CDS | 30.0% |
| TCTATCCTCATCATTTCCAA+TGG | + | chr7_3:52810327-52810346 | None:intergenic | 35.0% | |
| TAGAAACCTCAAACGCAAAA+TGG | - | chr7_3:52810343-52810362 | Msa1109290:CDS | 35.0% | |
| GATTTACTAACCCTAAGACT+TGG | - | chr7_3:52810443-52810462 | Msa1109290:CDS | 35.0% | |
| AATGGAAGATAAAAGGAGAG+AGG | - | chr7_3:52810661-52810680 | Msa1109290:CDS | 35.0% | |
| GAATAGAGCTTGAAAACCAT+AGG | + | chr7_3:52810703-52810722 | None:intergenic | 35.0% | |
| TCAAGCTCTATTCACTATCA+AGG | - | chr7_3:52810710-52810729 | Msa1109290:CDS | 35.0% | |
| TAGCACTACGGAAATATGAA+TGG | + | chr7_3:52810736-52810755 | None:intergenic | 35.0% | |
| TCTATCCTCATCATTTCCAA+TGG | + | chr7_3:52810327-52810346 | None:intergenic | 35.0% | |
| TAGAAACCTCAAACGCAAAA+TGG | - | chr7_3:52810343-52810362 | Msa1109290:CDS | 35.0% | |
| GATTTACTAACCCTAAGACT+TGG | - | chr7_3:52810443-52810462 | Msa1109290:CDS | 35.0% | |
| AATGGAAGATAAAAGGAGAG+AGG | - | chr7_3:52810661-52810680 | Msa1109290:CDS | 35.0% | |
| GAATAGAGCTTGAAAACCAT+AGG | + | chr7_3:52810703-52810722 | None:intergenic | 35.0% | |
| TCAAGCTCTATTCACTATCA+AGG | - | chr7_3:52810710-52810729 | Msa1109290:CDS | 35.0% | |
| TAGCACTACGGAAATATGAA+TGG | + | chr7_3:52810736-52810755 | None:intergenic | 35.0% | |
| ATGTCCGAGAGAATTTCCAT+TGG | - | chr7_3:52810308-52810327 | Msa1109290:CDS | 40.0% | |
| AAACCTCAAACGCAAAATGG+TGG | - | chr7_3:52810346-52810365 | Msa1109290:CDS | 40.0% | |
| TCAACATCAGATTCAGAGGT+TGG | + | chr7_3:52810422-52810441 | None:intergenic | 40.0% | |
| AACCTCTGAATCTGATGTTG+AGG | - | chr7_3:52810421-52810440 | Msa1109290:CDS | 40.0% | |
| ATCCTCAACATCAGATTCAG+AGG | + | chr7_3:52810426-52810445 | None:intergenic | 40.0% | |
| ! | GTTCACGCTTATGAGCATTT+TGG | + | chr7_3:52810628-52810647 | None:intergenic | 40.0% |
| TAAAAGGAGAGAGGAAGAGA+TGG | - | chr7_3:52810670-52810689 | Msa1109290:CDS | 40.0% | |
| ! | AAGAGATGGATTCAACCCTA+TGG | - | chr7_3:52810684-52810703 | Msa1109290:CDS | 40.0% |
| AGGAAAGACATTGGTCACAT+GGG | + | chr7_3:52810780-52810799 | None:intergenic | 40.0% | |
| ! | CCAAATTGTGTTGTTGCTTG+GGG | + | chr7_3:52810896-52810915 | None:intergenic | 40.0% |
| ! | CCCAAATTGTGTTGTTGCTT+GGG | + | chr7_3:52810897-52810916 | None:intergenic | 40.0% |
| CCCAAGCAACAACACAATTT+GGG | - | chr7_3:52810894-52810913 | Msa1109290:CDS | 40.0% | |
| ! | TCCCAAATTGTGTTGTTGCT+TGG | + | chr7_3:52810898-52810917 | None:intergenic | 40.0% |
| !!! | ATGACTAATTTTTGGGGTGG+AGG | - | chr7_3:52810917-52810936 | Msa1109290:CDS | 40.0% |
| GTGTTTGACCTTTGTGGAAT+TGG | + | chr7_3:52810959-52810978 | None:intergenic | 40.0% | |
| TCCACAAAGGTCAAACACTT+TGG | - | chr7_3:52810961-52810980 | Msa1109290:CDS | 40.0% | |
| CCACAAAGGTCAAACACTTT+GGG | - | chr7_3:52810962-52810981 | Msa1109290:CDS | 40.0% | |
| !! | AGGTCAAACACTTTGGGTTT+TGG | - | chr7_3:52810968-52810987 | Msa1109290:CDS | 40.0% |
| TCTCGTGATCCTAATAGAGA+AGG | - | chr7_3:52811049-52811068 | Msa1109290:CDS | 40.0% | |
| !! | GTTGATGATGAGGACACATT+GGG | + | chr7_3:52811091-52811110 | None:intergenic | 40.0% |
| !! | AGTTGATGATGAGGACACAT+TGG | + | chr7_3:52811092-52811111 | None:intergenic | 40.0% |
| !! | GGTTGATTGAGTTGATGATG+AGG | + | chr7_3:52811101-52811120 | None:intergenic | 40.0% |
| ATGTCCGAGAGAATTTCCAT+TGG | - | chr7_3:52810308-52810327 | Msa1109290:CDS | 40.0% | |
| AAACCTCAAACGCAAAATGG+TGG | - | chr7_3:52810346-52810365 | Msa1109290:CDS | 40.0% | |
| TCAACATCAGATTCAGAGGT+TGG | + | chr7_3:52810422-52810441 | None:intergenic | 40.0% | |
| AACCTCTGAATCTGATGTTG+AGG | - | chr7_3:52810421-52810440 | Msa1109290:CDS | 40.0% | |
| ATCCTCAACATCAGATTCAG+AGG | + | chr7_3:52810426-52810445 | None:intergenic | 40.0% | |
| ! | GTTCACGCTTATGAGCATTT+TGG | + | chr7_3:52810628-52810647 | None:intergenic | 40.0% |
| TAAAAGGAGAGAGGAAGAGA+TGG | - | chr7_3:52810670-52810689 | Msa1109290:CDS | 40.0% | |
| ! | AAGAGATGGATTCAACCCTA+TGG | - | chr7_3:52810684-52810703 | Msa1109290:CDS | 40.0% |
| AGGAAAGACATTGGTCACAT+GGG | + | chr7_3:52810780-52810799 | None:intergenic | 40.0% | |
| ! | CCAAATTGTGTTGTTGCTTG+GGG | + | chr7_3:52810896-52810915 | None:intergenic | 40.0% |
| ! | CCCAAATTGTGTTGTTGCTT+GGG | + | chr7_3:52810897-52810916 | None:intergenic | 40.0% |
| CCCAAGCAACAACACAATTT+GGG | - | chr7_3:52810894-52810913 | Msa1109290:CDS | 40.0% | |
| ! | TCCCAAATTGTGTTGTTGCT+TGG | + | chr7_3:52810898-52810917 | None:intergenic | 40.0% |
| !!! | ATGACTAATTTTTGGGGTGG+AGG | - | chr7_3:52810917-52810936 | Msa1109290:CDS | 40.0% |
| GTGTTTGACCTTTGTGGAAT+TGG | + | chr7_3:52810959-52810978 | None:intergenic | 40.0% | |
| TCCACAAAGGTCAAACACTT+TGG | - | chr7_3:52810961-52810980 | Msa1109290:CDS | 40.0% | |
| CCACAAAGGTCAAACACTTT+GGG | - | chr7_3:52810962-52810981 | Msa1109290:CDS | 40.0% | |
| !! | AGGTCAAACACTTTGGGTTT+TGG | - | chr7_3:52810968-52810987 | Msa1109290:CDS | 40.0% |
| TCTCGTGATCCTAATAGAGA+AGG | - | chr7_3:52811049-52811068 | Msa1109290:CDS | 40.0% | |
| !! | GTTGATGATGAGGACACATT+GGG | + | chr7_3:52811091-52811110 | None:intergenic | 40.0% |
| !! | AGTTGATGATGAGGACACAT+TGG | + | chr7_3:52811092-52811111 | None:intergenic | 40.0% |
| !! | GGTTGATTGAGTTGATGATG+AGG | + | chr7_3:52811101-52811120 | None:intergenic | 40.0% |
| ACTTCCAAACCCTTGGAGAA+CGG | - | chr7_3:52810482-52810501 | Msa1109290:CDS | 45.0% | |
| ACCTTTACCTGAGCAGAAAG+TGG | - | chr7_3:52810541-52810560 | Msa1109290:CDS | 45.0% | |
| ACCACTTTCTGCTCAGGTAA+AGG | + | chr7_3:52810545-52810564 | None:intergenic | 45.0% | |
| AACTCTACCACTTTCTGCTC+AGG | + | chr7_3:52810551-52810570 | None:intergenic | 45.0% | |
| TTCTCCACTTCTCAAGCTCT+TGG | - | chr7_3:52810596-52810615 | Msa1109290:CDS | 45.0% | |
| GGTTGTGCAAGTTAGCACTA+CGG | + | chr7_3:52810748-52810767 | None:intergenic | 45.0% | |
| ! | GCTAACTTGCACAACCCAAT+TGG | - | chr7_3:52810752-52810771 | Msa1109290:CDS | 45.0% |
| CAGGAAAGACATTGGTCACA+TGG | + | chr7_3:52810781-52810800 | None:intergenic | 45.0% | |
| TGACCAATGTCTTTCCTGCT+TGG | - | chr7_3:52810783-52810802 | Msa1109290:CDS | 45.0% | |
| AATGTCTTTCCTGCTTGGCT+CGG | - | chr7_3:52810788-52810807 | Msa1109290:CDS | 45.0% | |
| ATCACATACCAGGTTGCAAG+GGG | + | chr7_3:52810857-52810876 | None:intergenic | 45.0% | |
| CATCACATACCAGGTTGCAA+GGG | + | chr7_3:52810858-52810877 | None:intergenic | 45.0% | |
| TGGCATTTGCATCACATACC+AGG | + | chr7_3:52810867-52810886 | None:intergenic | 45.0% | |
| ! | GTTGTTGCTTGGGGTGAATT+TGG | + | chr7_3:52810887-52810906 | None:intergenic | 45.0% |
| CCCCAAGCAACAACACAATT+TGG | - | chr7_3:52810893-52810912 | Msa1109290:CDS | 45.0% | |
| !! | GGGATGACTAATTTTTGGGG+TGG | - | chr7_3:52810914-52810933 | Msa1109290:CDS | 45.0% |
| CTGCATTGCCAATTCCACAA+AGG | - | chr7_3:52810948-52810967 | Msa1109290:CDS | 45.0% | |
| ! | CCCAAAGTGTTTGACCTTTG+TGG | + | chr7_3:52810965-52810984 | None:intergenic | 45.0% |
| ACTTCCAAACCCTTGGAGAA+CGG | - | chr7_3:52810482-52810501 | Msa1109290:CDS | 45.0% | |
| ACCTTTACCTGAGCAGAAAG+TGG | - | chr7_3:52810541-52810560 | Msa1109290:CDS | 45.0% | |
| ACCACTTTCTGCTCAGGTAA+AGG | + | chr7_3:52810545-52810564 | None:intergenic | 45.0% | |
| AACTCTACCACTTTCTGCTC+AGG | + | chr7_3:52810551-52810570 | None:intergenic | 45.0% | |
| TTCTCCACTTCTCAAGCTCT+TGG | - | chr7_3:52810596-52810615 | Msa1109290:CDS | 45.0% | |
| GGTTGTGCAAGTTAGCACTA+CGG | + | chr7_3:52810748-52810767 | None:intergenic | 45.0% | |
| ! | GCTAACTTGCACAACCCAAT+TGG | - | chr7_3:52810752-52810771 | Msa1109290:CDS | 45.0% |
| CAGGAAAGACATTGGTCACA+TGG | + | chr7_3:52810781-52810800 | None:intergenic | 45.0% | |
| TGACCAATGTCTTTCCTGCT+TGG | - | chr7_3:52810783-52810802 | Msa1109290:CDS | 45.0% | |
| AATGTCTTTCCTGCTTGGCT+CGG | - | chr7_3:52810788-52810807 | Msa1109290:CDS | 45.0% | |
| ATCACATACCAGGTTGCAAG+GGG | + | chr7_3:52810857-52810876 | None:intergenic | 45.0% | |
| CATCACATACCAGGTTGCAA+GGG | + | chr7_3:52810858-52810877 | None:intergenic | 45.0% | |
| TGGCATTTGCATCACATACC+AGG | + | chr7_3:52810867-52810886 | None:intergenic | 45.0% | |
| ! | GTTGTTGCTTGGGGTGAATT+TGG | + | chr7_3:52810887-52810906 | None:intergenic | 45.0% |
| CCCCAAGCAACAACACAATT+TGG | - | chr7_3:52810893-52810912 | Msa1109290:CDS | 45.0% | |
| !! | GGGATGACTAATTTTTGGGG+TGG | - | chr7_3:52810914-52810933 | Msa1109290:CDS | 45.0% |
| CTGCATTGCCAATTCCACAA+AGG | - | chr7_3:52810948-52810967 | Msa1109290:CDS | 45.0% | |
| ! | CCCAAAGTGTTTGACCTTTG+TGG | + | chr7_3:52810965-52810984 | None:intergenic | 45.0% |
| ! | CCTCCACCATTTTGCGTTTG+AGG | + | chr7_3:52810352-52810371 | None:intergenic | 50.0% |
| CCTCAAACGCAAAATGGTGG+AGG | - | chr7_3:52810349-52810368 | Msa1109290:CDS | 50.0% | |
| GGTGTGAGTGCCAAGTCTTA+GGG | + | chr7_3:52810456-52810475 | None:intergenic | 50.0% | |
| TGGTGTGAGTGCCAAGTCTT+AGG | + | chr7_3:52810457-52810476 | None:intergenic | 50.0% | |
| ! | CAAGGGTTTGGAAGTGGACT+TGG | + | chr7_3:52810477-52810496 | None:intergenic | 50.0% |
| CAAGTCCACTTCCAAACCCT+TGG | - | chr7_3:52810475-52810494 | Msa1109290:CDS | 50.0% | |
| GTTCTCCAAGGGTTTGGAAG+TGG | + | chr7_3:52810483-52810502 | None:intergenic | 50.0% | |
| GAATGTCCACCGTTCTCCAA+GGG | + | chr7_3:52810494-52810513 | None:intergenic | 50.0% | |
| TGAATGTCCACCGTTCTCCA+AGG | + | chr7_3:52810495-52810514 | None:intergenic | 50.0% | |
| TCCACTTCTCAAGCTCTTGG+AGG | - | chr7_3:52810599-52810618 | Msa1109290:CDS | 50.0% | |
| ACCTCCAAGAGCTTGAGAAG+TGG | + | chr7_3:52810603-52810622 | None:intergenic | 50.0% | |
| GAGCCAAGCAGGAAAGACAT+TGG | + | chr7_3:52810789-52810808 | None:intergenic | 50.0% | |
| GGTTCACCATATGGTGGCTA+TGG | - | chr7_3:52810809-52810828 | Msa1109290:CDS | 50.0% | |
| TCACCATATGGTGGCTATGG+AGG | - | chr7_3:52810812-52810831 | Msa1109290:CDS | 50.0% | |
| CACCATATGGTGGCTATGGA+GGG | - | chr7_3:52810813-52810832 | Msa1109290:CDS | 50.0% | |
| ACCATATGGTGGCTATGGAG+GGG | - | chr7_3:52810814-52810833 | Msa1109290:CDS | 50.0% | |
| ! | CAGGTTGCAAGGGGTGTATT+TGG | + | chr7_3:52810848-52810867 | None:intergenic | 50.0% |
| CAAATACACCCCTTGCAACC+TGG | - | chr7_3:52810846-52810865 | Msa1109290:CDS | 50.0% | |
| GCATCACATACCAGGTTGCA+AGG | + | chr7_3:52810859-52810878 | None:intergenic | 50.0% | |
| ! | CCTCCACCATTTTGCGTTTG+AGG | + | chr7_3:52810352-52810371 | None:intergenic | 50.0% |
| CCTCAAACGCAAAATGGTGG+AGG | - | chr7_3:52810349-52810368 | Msa1109290:CDS | 50.0% | |
| GGTGTGAGTGCCAAGTCTTA+GGG | + | chr7_3:52810456-52810475 | None:intergenic | 50.0% | |
| TGGTGTGAGTGCCAAGTCTT+AGG | + | chr7_3:52810457-52810476 | None:intergenic | 50.0% | |
| ! | CAAGGGTTTGGAAGTGGACT+TGG | + | chr7_3:52810477-52810496 | None:intergenic | 50.0% |
| CAAGTCCACTTCCAAACCCT+TGG | - | chr7_3:52810475-52810494 | Msa1109290:CDS | 50.0% | |
| GTTCTCCAAGGGTTTGGAAG+TGG | + | chr7_3:52810483-52810502 | None:intergenic | 50.0% | |
| GAATGTCCACCGTTCTCCAA+GGG | + | chr7_3:52810494-52810513 | None:intergenic | 50.0% | |
| TGAATGTCCACCGTTCTCCA+AGG | + | chr7_3:52810495-52810514 | None:intergenic | 50.0% | |
| TCCACTTCTCAAGCTCTTGG+AGG | - | chr7_3:52810599-52810618 | Msa1109290:CDS | 50.0% | |
| ACCTCCAAGAGCTTGAGAAG+TGG | + | chr7_3:52810603-52810622 | None:intergenic | 50.0% | |
| GAGCCAAGCAGGAAAGACAT+TGG | + | chr7_3:52810789-52810808 | None:intergenic | 50.0% | |
| GGTTCACCATATGGTGGCTA+TGG | - | chr7_3:52810809-52810828 | Msa1109290:CDS | 50.0% | |
| TCACCATATGGTGGCTATGG+AGG | - | chr7_3:52810812-52810831 | Msa1109290:CDS | 50.0% | |
| CACCATATGGTGGCTATGGA+GGG | - | chr7_3:52810813-52810832 | Msa1109290:CDS | 50.0% | |
| ACCATATGGTGGCTATGGAG+GGG | - | chr7_3:52810814-52810833 | Msa1109290:CDS | 50.0% | |
| ! | CAGGTTGCAAGGGGTGTATT+TGG | + | chr7_3:52810848-52810867 | None:intergenic | 50.0% |
| CAAATACACCCCTTGCAACC+TGG | - | chr7_3:52810846-52810865 | Msa1109290:CDS | 50.0% | |
| GCATCACATACCAGGTTGCA+AGG | + | chr7_3:52810859-52810878 | None:intergenic | 50.0% | |
| TCCAAACCCTTGGAGAACGG+TGG | - | chr7_3:52810485-52810504 | Msa1109290:CDS | 55.0% | |
| TCCACCGTTCTCCAAGGGTT+TGG | + | chr7_3:52810489-52810508 | None:intergenic | 55.0% | |
| TGGTCACATGGGCGCCAATT+GGG | + | chr7_3:52810769-52810788 | None:intergenic | 55.0% | |
| TTGGTCACATGGGCGCCAAT+TGG | + | chr7_3:52810770-52810789 | None:intergenic | 55.0% | |
| TATGGTGAACCGAGCCAAGC+AGG | + | chr7_3:52810800-52810819 | None:intergenic | 55.0% | |
| !! | GCTTGGCTCGGTTCACCATA+TGG | - | chr7_3:52810800-52810819 | Msa1109290:CDS | 55.0% |
| !! | TGGCTCGGTTCACCATATGG+TGG | - | chr7_3:52810803-52810822 | Msa1109290:CDS | 55.0% |
| ACCCCTCCATAGCCACCATA+TGG | + | chr7_3:52810818-52810837 | None:intergenic | 55.0% | |
| TCCAAACCCTTGGAGAACGG+TGG | - | chr7_3:52810485-52810504 | Msa1109290:CDS | 55.0% | |
| TCCACCGTTCTCCAAGGGTT+TGG | + | chr7_3:52810489-52810508 | None:intergenic | 55.0% | |
| TGGTCACATGGGCGCCAATT+GGG | + | chr7_3:52810769-52810788 | None:intergenic | 55.0% | |
| TTGGTCACATGGGCGCCAAT+TGG | + | chr7_3:52810770-52810789 | None:intergenic | 55.0% | |
| TATGGTGAACCGAGCCAAGC+AGG | + | chr7_3:52810800-52810819 | None:intergenic | 55.0% | |
| !! | GCTTGGCTCGGTTCACCATA+TGG | - | chr7_3:52810800-52810819 | Msa1109290:CDS | 55.0% |
| !! | TGGCTCGGTTCACCATATGG+TGG | - | chr7_3:52810803-52810822 | Msa1109290:CDS | 55.0% |
| ACCCCTCCATAGCCACCATA+TGG | + | chr7_3:52810818-52810837 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 52810308 | 52811123 | 52810308 | ID=Msa1109290;Name=Msa1109290 |
| chr7_3 | mRNA | 52810308 | 52811123 | 52810308 | ID=Msa1109290-mRNA-1;Parent=Msa1109290;Name=Msa1109290-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|271 |
| chr7_3 | exon | 52810308 | 52811123 | 52810308 | ID=Msa1109290-mRNA-1:exon:11141;Parent=Msa1109290-mRNA-1 |
| chr7_3 | CDS | 52810308 | 52811123 | 52810308 | ID=Msa1109290-mRNA-1:cds;Parent=Msa1109290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
