AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1110230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1110230 MtrunA17_Chr2g0300441 85.593 236 34 0 1 236 1 236 7.83e-149 414
Msa1110230 MtrunA17_Chr7g0238991 85.135 222 32 1 16 236 27 248 8.97e-136 381
Msa1110230 MtrunA17_Chr8g0355091 72.996 237 63 1 1 236 1 237 5.83e-124 351
Msa1110230 MtrunA17_Chr1g0206721 75.342 219 54 0 1 219 1 219 3.30e-119 339
Msa1110230 MtrunA17_Chr2g0292791 74.886 219 55 0 1 219 1 219 5.15e-118 336
Msa1110230 MtrunA17_Chr1g0206701 72.889 225 61 0 1 225 1 225 6.34e-118 336
Msa1110230 MtrunA17_Chr1g0149391 72.603 219 60 0 1 219 1 219 9.95e-115 328
Msa1110230 MtrunA17_Chr1g0208561 70.638 235 51 3 1 225 1 227 6.80e-114 325
Msa1110230 MtrunA17_Chr3g0089141 70.638 235 51 3 1 225 1 227 1.16e-112 322
Msa1110230 MtrunA17_Chr2g0325971 71.064 235 50 3 1 225 1 227 3.58e-112 321
Msa1110230 MtrunA17_Chr3g0099421 70.776 219 64 0 1 219 26 244 7.98e-111 318
Msa1110230 MtrunA17_Chr1g0208581 68.220 236 55 3 1 225 1 227 2.25e-108 311
Msa1110230 MtrunA17_Chr1g0187361 65.333 225 78 0 1 225 1 225 7.11e-105 303
Msa1110230 MtrunA17_Chr2g0317451 62.712 236 87 1 1 235 1 236 5.75e-104 300
Msa1110230 MtrunA17_Chr1g0206691 66.818 220 72 1 18 236 1 220 1.52e-103 299
Msa1110230 MtrunA17_Chr2g0317481 62.712 236 87 1 1 235 1 236 1.83e-103 299
Msa1110230 MtrunA17_Chr5g0422941 61.181 237 91 1 1 236 1 237 7.36e-101 293
Msa1110230 MtrunA17_Chr1g0188671 63.111 225 83 0 1 225 39 263 1.19e-100 293
Msa1110230 MtrunA17_Chr5g0422421 64.000 225 81 0 1 225 1 225 5.97e-99 288
Msa1110230 MtrunA17_Chr5g0419601 61.778 225 86 0 1 225 1 225 2.04e-95 279
Msa1110230 MtrunA17_Chr1g0206991 73.481 181 48 0 1 181 1 181 2.46e-95 276
Msa1110230 MtrunA17_Chr3g0099411 65.297 219 57 2 1 219 1 200 7.67e-95 276
Msa1110230 MtrunA17_Chr3g0089151 83.333 132 22 0 1 132 1 132 3.98e-74 221
Msa1110230 MtrunA17_Chr2g0300421 73.881 134 35 0 1 134 1 134 1.34e-63 196
Msa1110230 MtrunA17_Chr3g0085241 48.295 176 91 0 3 178 35 210 2.71e-55 177
Msa1110230 MtrunA17_Chr3g0119901 53.289 152 71 0 9 160 9 160 1.52e-54 174
Msa1110230 MtrunA17_Chr3g0111931 62.745 102 38 0 21 122 2 103 4.15e-40 134
Msa1110230 MtrunA17_Chr8g0379021 39.429 175 96 2 5 176 8 175 1.78e-34 121
Msa1110230 MtrunA17_Chr2g0333981 38.037 163 97 1 5 167 8 166 4.35e-33 118
Msa1110230 MtrunA17_Chr1g0187351 77.273 66 15 0 18 83 1 66 2.30e-31 110
Msa1110230 MtrunA17_Chr4g0018951 44.203 138 65 3 22 159 25 150 4.90e-29 107
Msa1110230 MtrunA17_Chr3g0111841 79.661 59 12 0 15 73 2 60 7.45e-28 101
Msa1110230 MtrunA17_Chr4g0071601 35.838 173 97 3 5 167 8 176 3.26e-23 92.8
Msa1110230 MtrunA17_Chr1g0175601 44.144 111 60 1 9 119 2 110 5.21e-23 92.0
Msa1110230 MtrunA17_Chr1g0175611 43.363 113 62 1 9 121 2 112 1.45e-22 90.5
Msa1110230 MtrunA17_Chr1g0169761 57.971 69 29 0 9 77 2 70 2.77e-22 90.1
Msa1110230 MtrunA17_Chr4g0074101 38.281 128 64 2 9 121 2 129 3.16e-22 90.5
Msa1110230 MtrunA17_Chr8g0376821 57.971 69 29 0 9 77 2 70 6.82e-22 89.0
Msa1110230 MtrunA17_Chr1g0180591 44.554 101 54 1 9 109 2 100 2.05e-21 87.8
Msa1110230 MtrunA17_Chr3g0111831 62.295 61 23 0 16 76 11 71 9.04e-21 83.2
Msa1110230 MtrunA17_Chr8g0357771 55.072 69 31 0 9 77 2 70 2.07e-20 85.1
Msa1110230 MtrunA17_Chr8g0356071 53.623 69 32 0 9 77 2 70 2.08e-19 82.0
Msa1110230 MtrunA17_Chr4g0052061 39.091 110 65 1 9 118 2 109 4.94e-18 78.2
Msa1110230 MtrunA17_Chr3g0077501 50.000 70 33 1 7 76 2 69 4.33e-17 77.4
Msa1110230 MtrunA17_Chr4g0049901 38.793 116 53 2 11 108 30 145 5.25e-17 77.4
Msa1110230 MtrunA17_Chr8g0351041 31.250 160 94 3 12 167 5 152 7.01e-17 75.5
Msa1110230 MtrunA17_Chr3g0097101 44.706 85 45 1 2 86 12 94 1.52e-16 76.3
Msa1110230 MtrunA17_Chr8g0351051 46.250 80 40 2 7 85 2 79 1.52e-16 76.3
Msa1110230 MtrunA17_Chr4g0052081 38.679 106 64 1 9 113 2 107 1.61e-16 74.7
Msa1110230 MtrunA17_Chr4g0057151 50.769 65 32 0 12 76 5 69 2.12e-16 75.1
Msa1110230 MtrunA17_Chr3g0134451 43.137 102 55 3 9 109 2 101 5.04e-16 75.9
Msa1110230 MtrunA17_Chr5g0427401 48.485 66 34 0 11 76 4 69 1.45e-15 73.2
Msa1110230 MtrunA17_Chr8g0380021 47.945 73 36 1 4 76 15 85 1.65e-15 73.2
Msa1110230 MtrunA17_Chr8g0351031 27.317 205 129 4 12 208 5 197 1.95e-15 72.8
Msa1110230 MtrunA17_Chr8g0345001 32.353 170 88 4 2 159 13 167 2.47e-15 71.6
Msa1110230 MtrunA17_Chr6g0474371 46.479 71 35 2 7 76 2 70 3.09e-15 71.6
Msa1110230 MtrunA17_Chr2g0284911 48.611 72 35 1 5 76 15 84 3.69e-15 72.8
Msa1110230 MtrunA17_Chr2g0279821 45.714 70 36 1 7 76 2 69 3.85e-15 72.4
Msa1110230 MtrunA17_Chr4g0020221 41.667 84 47 1 7 90 2 83 6.33e-15 72.0
Msa1110230 MtrunA17_Chr4g0061691 45.070 71 36 2 7 76 2 70 9.63e-15 70.9
Msa1110230 MtrunA17_Chr5g0412461 45.455 66 36 0 11 76 4 69 9.80e-15 70.9
Msa1110230 MtrunA17_Chr5g0411691 32.381 210 104 10 7 183 2 206 1.08e-14 70.9
Msa1110230 MtrunA17_Chr7g0246431 47.692 65 34 0 12 76 5 69 1.12e-14 70.5
Msa1110230 MtrunA17_Chr5g0412271 45.455 66 36 0 11 76 4 69 1.17e-14 70.9
Msa1110230 MtrunA17_Chr7g0220121 35.593 118 63 5 7 114 2 116 1.86e-14 70.5
Msa1110230 MtrunA17_Chr5g0425191 54.717 53 24 0 9 61 2 54 2.21e-14 67.0
Msa1110230 MtrunA17_Chr1g0204111 47.143 70 35 1 7 76 18 85 3.18e-14 70.1
Msa1110230 MtrunA17_Chr4g0049541 44.286 70 37 1 7 76 2 69 3.29e-14 69.3
Msa1110230 MtrunA17_Chr7g0220111 46.479 71 35 2 7 76 2 70 6.25e-14 68.9
Msa1110230 MtrunA17_Chr6g0455511 46.479 71 35 2 7 76 2 70 6.45e-14 68.9
Msa1110230 MtrunA17_Chr3g0093131 34.266 143 77 4 26 159 36 170 7.22e-14 67.8
Msa1110230 MtrunA17_Chr8g0366231 43.662 71 37 2 7 76 2 70 8.74e-14 68.6
Msa1110230 MtrunA17_Chr1g0164791 45.833 72 35 2 7 76 2 71 9.42e-14 68.2
Msa1110230 MtrunA17_Chr4g0044071 50.877 57 28 0 9 65 2 58 1.02e-13 65.5
Msa1110230 MtrunA17_Chr1g0173161 49.206 63 30 1 7 69 2 62 1.41e-13 64.3
Msa1110230 MtrunA17_Chr2g0308251 42.667 75 41 1 7 81 2 74 2.76e-13 63.5
Msa1110230 MtrunA17_Chr5g0404951 47.222 72 34 2 7 76 2 71 2.76e-13 67.0
Msa1110230 MtrunA17_Chr1g0159661 31.538 130 66 4 7 133 2 111 2.96e-13 65.9
Msa1110230 MtrunA17_Chr5g0420081 35.652 115 55 5 9 111 2 109 4.04e-13 66.6
Msa1110230 MtrunA17_Chr5g0420091 45.070 71 36 2 7 76 2 70 5.56e-13 65.9
Msa1110230 MtrunA17_Chr3g0125241 31.008 129 68 3 7 133 27 136 5.82e-13 65.9
Msa1110230 MtrunA17_Chr5g0427921 45.763 59 30 1 7 65 2 58 7.89e-13 61.6
Msa1110230 MtrunA17_Chr7g0246381 45.588 68 30 2 7 69 2 67 8.87e-13 62.0
Msa1110230 MtrunA17_Chr3g0142191 43.662 71 38 1 12 80 5 75 9.64e-13 65.5
Msa1110230 MtrunA17_Chr3g0122251 41.573 89 46 4 7 91 2 88 1.71e-12 65.1
Msa1110230 MtrunA17_Chr8g0377561 50.000 58 27 1 7 64 2 57 1.97e-12 61.6
Msa1110230 MtrunA17_Chr4g0061671 47.458 59 29 1 7 65 2 58 3.40e-12 63.2
Msa1110230 MtrunA17_Chr4g0060841 30.769 130 83 5 9 134 2 128 4.85e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1110230 AT5G60440.1 54.491 167 73 2 5 168 3 169 1.33e-53 175
Msa1110230 AT2G24840.1 44.375 160 80 4 9 163 63 218 1.27e-36 130
Msa1110230 AT1G01530.1 43.976 166 86 3 4 166 2 163 1.49e-35 127
Msa1110230 AT1G65360.1 38.624 189 109 3 5 192 3 185 3.96e-35 125
Msa1110230 AT4G36590.1 38.012 171 98 3 5 168 3 172 1.29e-30 114
Msa1110230 AT3G04100.1 29.949 197 132 3 2 193 7 202 8.93e-25 97.8
Msa1110230 AT2G34440.1 40.708 113 66 1 9 121 2 113 5.49e-22 89.4
Msa1110230 AT3G66656.1 38.655 119 69 1 9 123 2 120 1.72e-20 85.5
Msa1110230 AT1G28460.1 30.857 175 117 2 5 177 4 176 8.14e-20 84.0
Msa1110230 AT1G72350.1 52.055 73 33 1 9 81 43 113 8.38e-19 82.4
Msa1110230 AT4G09960.2 43.564 101 48 4 7 101 2 99 3.36e-18 80.5
Msa1110230 AT4G09960.1 43.564 101 48 4 7 101 2 99 4.28e-18 80.5
Msa1110230 AT4G09960.6 43.564 101 48 4 7 101 3 100 4.31e-18 80.5
Msa1110230 AT4G09960.5 43.564 101 48 4 7 101 12 109 5.62e-18 80.5
Msa1110230 AT4G09960.3 43.564 101 48 4 7 101 28 125 9.52e-18 80.1
Msa1110230 AT4G09960.4 43.564 101 48 4 7 101 97 194 2.05e-17 80.1
Msa1110230 AT4G18960.1 39.423 104 51 2 5 108 16 107 4.04e-17 78.2
Msa1110230 AT2G45660.2 50.000 66 33 0 12 77 5 70 4.27e-17 76.3
Msa1110230 AT4G22950.2 50.769 65 32 0 12 76 5 69 9.57e-17 75.5
Msa1110230 AT2G45650.1 50.000 70 33 1 7 76 2 69 1.03e-16 77.0
Msa1110230 AT2G45660.1 50.000 66 33 0 12 77 5 70 1.08e-16 76.3
Msa1110230 AT5G51870.2 52.308 65 31 0 12 76 5 69 3.21e-16 74.3
Msa1110230 AT4G22950.3 50.769 65 32 0 12 76 5 69 3.59e-16 75.1
Msa1110230 AT4G22950.1 50.769 65 32 0 12 76 5 69 3.59e-16 75.1
Msa1110230 AT2G42830.1 49.333 75 36 1 2 76 12 84 3.69e-16 75.5
Msa1110230 AT1G29962.1 32.558 172 90 6 5 165 4 160 3.94e-16 74.3
Msa1110230 AT5G51870.1 52.308 65 31 0 12 76 5 69 3.96e-16 74.7
Msa1110230 AT2G42830.2 49.333 75 36 1 2 76 12 84 4.29e-16 75.5
Msa1110230 AT1G28450.1 30.460 174 111 4 5 168 4 177 4.55e-16 73.9
Msa1110230 AT3G58780.1 49.333 75 36 1 2 76 12 84 5.30e-16 75.1
Msa1110230 AT3G58780.5 49.333 75 36 1 2 76 18 90 6.00e-16 75.1
Msa1110230 AT5G51870.4 52.308 65 31 0 12 76 5 69 7.18e-16 74.3
Msa1110230 AT5G51870.3 50.000 74 35 1 3 76 8 79 7.40e-16 74.3
Msa1110230 AT5G51870.5 52.308 65 31 0 12 76 28 92 8.76e-16 73.6
Msa1110230 AT3G58780.4 49.333 75 36 1 2 76 12 84 1.01e-15 74.7
Msa1110230 AT3G57230.2 44.286 70 37 1 7 76 2 69 1.24e-15 72.0
Msa1110230 AT2G22540.3 48.485 66 34 0 11 76 4 69 1.76e-15 73.6
Msa1110230 AT2G22540.1 48.485 66 34 0 11 76 4 69 1.76e-15 73.6
Msa1110230 AT1G77980.1 48.571 70 35 1 9 77 2 71 2.24e-15 74.3
Msa1110230 AT1G22130.1 38.710 93 56 1 9 100 2 94 2.47e-15 74.3
Msa1110230 AT5G13790.1 50.000 70 33 1 7 76 2 69 3.11e-15 73.2
Msa1110230 AT5G13790.2 50.000 70 33 1 7 76 2 69 3.19e-15 73.2
Msa1110230 AT4G24540.1 48.485 66 34 0 11 76 4 69 3.19e-15 72.4
Msa1110230 AT1G77950.3 44.737 76 40 2 9 83 2 76 3.95e-15 72.8
Msa1110230 AT1G77950.2 44.737 76 40 2 9 83 2 76 3.95e-15 72.8
Msa1110230 AT1G77950.1 44.737 76 40 2 9 83 2 76 3.95e-15 72.8
Msa1110230 AT1G77950.4 44.737 76 40 2 9 83 2 76 3.95e-15 72.8
Msa1110230 AT5G62165.14 46.154 65 35 0 12 76 5 69 5.22e-15 69.3
Msa1110230 AT4G37940.4 45.714 70 36 1 7 76 2 69 5.32e-15 71.6
Msa1110230 AT4G37940.1 45.714 70 36 1 7 76 2 69 5.42e-15 72.0
Msa1110230 AT5G62165.17 46.154 65 35 0 12 76 5 69 5.56e-15 70.5
Msa1110230 AT5G62165.12 46.154 65 35 0 12 76 5 69 5.56e-15 70.5
Msa1110230 AT5G62165.11 46.154 65 35 0 12 76 5 69 5.56e-15 70.5
Msa1110230 AT4G37940.3 45.714 70 36 1 7 76 2 69 5.75e-15 70.9
Msa1110230 AT3G61120.1 42.222 90 49 2 7 95 2 89 6.56e-15 72.0
Msa1110230 AT5G62165.6 46.154 65 35 0 12 76 5 69 7.25e-15 70.1
Msa1110230 AT5G62165.9 46.154 65 35 0 12 76 5 69 7.25e-15 70.1
Msa1110230 AT5G62165.7 46.154 65 35 0 12 76 5 69 7.25e-15 70.1
Msa1110230 AT5G62165.8 46.154 65 35 0 12 76 5 69 7.25e-15 70.1
Msa1110230 AT5G62165.13 46.154 65 35 0 12 76 5 69 7.25e-15 70.1
Msa1110230 AT3G57230.1 44.286 70 37 1 7 76 2 69 7.98e-15 71.6
Msa1110230 AT3G57230.4 44.286 70 37 1 7 76 2 69 7.98e-15 71.6
Msa1110230 AT3G57390.3 47.143 70 35 1 7 76 2 69 8.68e-15 71.6
Msa1110230 AT5G10140.2 47.826 69 35 1 9 76 2 70 9.25e-15 70.1
Msa1110230 AT5G51860.2 49.231 65 33 0 12 76 5 69 1.06e-14 70.9
Msa1110230 AT1G17310.2 34.524 168 69 4 8 170 58 189 1.20e-14 71.2
Msa1110230 AT1G17310.1 34.524 168 69 4 8 170 47 178 1.23e-14 70.9
Msa1110230 AT5G51860.1 49.231 65 33 0 12 76 5 69 1.37e-14 70.5
Msa1110230 AT5G10140.4 47.826 69 35 1 9 76 2 70 1.45e-14 70.1
Msa1110230 AT3G57390.1 47.143 70 35 1 7 76 2 69 1.61e-14 71.2
Msa1110230 AT5G10140.1 47.826 69 35 1 9 76 2 70 1.73e-14 70.1
Msa1110230 AT5G10140.3 47.826 69 35 1 9 76 2 70 1.73e-14 69.7
Msa1110230 AT5G62165.10 46.154 65 35 0 12 76 5 69 2.63e-14 69.7
Msa1110230 AT5G62165.4 46.154 65 35 0 12 76 5 69 2.63e-14 69.7
Msa1110230 AT5G62165.3 46.154 65 35 0 12 76 5 69 2.77e-14 69.7
Msa1110230 AT5G62165.1 46.154 65 35 0 12 76 5 69 2.77e-14 69.7
Msa1110230 AT5G62165.2 46.154 65 35 0 12 76 5 69 2.77e-14 69.7
Msa1110230 AT3G54340.1 45.833 72 35 2 7 76 2 71 3.03e-14 70.1
Msa1110230 AT2G22630.1 44.286 70 37 1 7 76 2 69 4.49e-14 69.3
Msa1110230 AT2G22630.2 44.286 70 37 1 7 76 2 69 4.49e-14 69.3
Msa1110230 AT1G47760.1 35.135 111 58 2 9 119 2 98 4.78e-14 68.6
Msa1110230 AT1G69120.2 45.070 71 36 2 7 76 2 70 5.10e-14 69.3
Msa1110230 AT3G30260.1 43.662 71 37 2 7 76 2 70 7.50e-14 69.3
Msa1110230 AT1G26310.1 45.070 71 36 2 7 76 2 70 7.67e-14 69.3
Msa1110230 AT5G60910.1 45.070 71 36 2 7 76 2 70 7.82e-14 68.9
Msa1110230 AT4G11880.2 46.970 66 34 1 12 76 5 70 1.17e-13 67.4
Msa1110230 AT4G11880.3 46.970 66 34 1 12 76 5 70 1.17e-13 67.4
Msa1110230 AT1G69120.1 45.070 71 36 2 7 76 2 70 1.20e-13 68.9
Msa1110230 AT5G15800.1 46.479 71 35 2 7 76 2 70 2.18e-13 67.8
Msa1110230 AT3G58780.2 50.769 65 30 1 2 66 12 74 2.53e-13 67.8
Msa1110230 AT2G14210.1 43.662 71 37 2 7 76 2 70 2.53e-13 67.4
Msa1110230 AT4G11880.4 46.970 66 34 1 12 76 5 70 2.61e-13 67.4
Msa1110230 AT4G11880.1 46.970 66 34 1 12 76 5 70 2.61e-13 67.4
Msa1110230 AT5G23260.1 46.667 75 38 1 5 77 14 88 2.95e-13 67.8
Msa1110230 AT5G23260.4 46.667 75 38 1 5 77 14 88 3.01e-13 67.8
Msa1110230 AT5G23260.2 49.315 73 33 2 7 77 2 72 3.03e-13 67.4
Msa1110230 AT5G23260.3 49.315 73 33 2 7 77 2 72 3.13e-13 67.4
Msa1110230 AT3G58780.3 50.769 65 30 1 2 66 12 74 3.26e-13 67.8
Msa1110230 AT5G20240.2 34.109 129 64 4 7 133 2 111 3.28e-13 65.5
Msa1110230 AT5G15800.2 46.479 71 35 2 7 76 2 70 3.29e-13 67.8
Msa1110230 AT2G14210.2 43.662 71 37 2 7 76 2 70 3.32e-13 67.4
Msa1110230 AT2G22540.2 46.970 66 30 1 11 76 4 64 3.60e-13 67.0
Msa1110230 AT5G65050.2 44.928 69 37 1 9 76 2 70 7.40e-13 65.1
Msa1110230 AT5G20240.1 34.109 129 64 4 7 133 2 111 7.57e-13 65.9
Msa1110230 AT5G65050.5 44.928 69 37 1 9 76 2 70 9.94e-13 65.1
Msa1110230 AT5G65050.1 44.928 69 37 1 9 76 2 70 1.09e-12 64.7
Msa1110230 AT5G65050.3 44.928 69 37 1 9 76 2 70 1.14e-12 65.1
Msa1110230 AT5G65060.2 44.928 69 37 1 9 76 2 70 1.32e-12 64.7
Msa1110230 AT3G02310.2 45.070 71 36 2 7 76 2 70 1.56e-12 64.7
Msa1110230 AT5G65060.3 44.928 69 37 1 9 76 2 70 1.72e-12 64.3
Msa1110230 AT5G65060.1 44.928 69 37 1 9 76 2 70 1.86e-12 64.3
Msa1110230 AT1G24260.3 38.542 96 53 4 7 98 2 95 3.15e-12 64.7
Msa1110230 AT3G02310.1 45.070 71 36 2 7 76 2 70 3.40e-12 64.7
Msa1110230 AT2G03710.3 44.444 72 36 3 7 76 2 71 3.49e-12 63.5
Msa1110230 AT1G24260.2 38.542 96 53 4 7 98 2 95 3.65e-12 64.7
Msa1110230 AT1G24260.1 43.662 71 37 2 7 76 2 70 5.62e-12 63.9
Msa1110230 AT2G03710.1 44.444 72 36 3 7 76 2 71 6.52e-12 63.9
Msa1110230 AT2G03710.2 44.444 72 36 3 7 76 2 71 6.52e-12 63.9
Msa1110230 AT1G71692.1 41.791 67 38 1 12 77 5 71 1.04e-11 62.8
Msa1110230 AT5G65070.4 39.130 69 41 1 9 76 2 70 1.57e-11 60.8
Msa1110230 AT5G49420.1 36.170 94 53 2 5 91 3 96 1.74e-11 63.2
Msa1110230 AT5G65070.1 39.130 69 41 1 9 76 2 70 3.01e-11 61.2
Msa1110230 AT5G65070.5 39.130 69 41 1 9 76 2 70 5.40e-11 60.8
Msa1110230 AT1G18750.4 34.091 88 55 2 9 93 2 89 5.72e-11 62.0
Msa1110230 AT1G18750.1 34.091 88 55 2 9 93 2 89 6.35e-11 62.0
Msa1110230 AT1G18750.3 34.091 88 55 2 9 93 2 89 6.44e-11 62.0

Find 53 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCAACGCCTTGCATAAA+AGG 0.199803 7_3:-54930117 None:intergenic
TGAATTATTCAAGAAGATTT+TGG 0.235888 7_3:+54930189 Msa1110230:CDS
ATCTCAGTTTGTTGAGGATT+TGG 0.255732 7_3:-54930334 None:intergenic
ATGTTGCAACCTCATTTAAT+TGG 0.256996 7_3:+54930385 Msa1110230:CDS
TGTTGATAGGAGTGCAATTC+AGG 0.259070 7_3:+54930240 Msa1110230:CDS
AAATAATTACCAACAGAAAA+TGG 0.265409 7_3:-54930283 None:intergenic
TTTAATTGGCTTCAACAATA+TGG 0.267629 7_3:+54930399 Msa1110230:CDS
AGGCGTTGAAGGCTCAATTT+TGG 0.314192 7_3:+54930128 Msa1110230:CDS
AATATGGAAGGAGGAGGATA+TGG 0.330377 7_3:+54930415 Msa1110230:CDS
GCCCTATTCATTCCATCAAT+TGG 0.363455 7_3:-54930160 None:intergenic
AATGAGCTTTGCACTCTTTG+TGG 0.373997 7_3:+54929863 Msa1110230:CDS
GTTGAGGATTTGGCTGATAA+TGG 0.382243 7_3:-54930324 None:intergenic
CACTTGGAGGTTGCTCTCAT+TGG 0.382708 7_3:-54929801 None:intergenic
TCCAATTGATGGAATGAATA+GGG 0.401080 7_3:+54930159 Msa1110230:CDS
TTGTTGCTCAACATGTTGAT+AGG 0.407276 7_3:+54930227 Msa1110230:CDS
CTAGAAACTTCAATAGAATC+CGG 0.407513 7_3:-54930443 None:intergenic
ATTAAATGAGGTTGCAACAT+AGG 0.428043 7_3:-54930382 None:intergenic
TGGTGGGCATGTCCAATTGA+TGG 0.439101 7_3:+54930148 Msa1110230:CDS
GTCCAATTGATGGAATGAAT+AGG 0.439545 7_3:+54930158 Msa1110230:CDS
TCTATGACCGTATCAACATT+TGG 0.448129 7_3:-54929944 None:intergenic
ATAATGGAGAGGGATGTTAG+AGG 0.448969 7_3:-54930308 None:intergenic
TCATAGATCGCTATCTCTGT+GGG 0.470822 7_3:+54929960 Msa1110230:CDS
ACCATGTCGAGCGGAAAGAA+AGG 0.479640 7_3:+54929743 None:intergenic
ACCTTTCTTTCCGCTCGACA+TGG 0.490818 7_3:-54929744 None:intergenic
TTAAATGAGGTTGCAACATA+GGG 0.493554 7_3:-54930381 None:intergenic
AGCATTGAGCTCACGCACTT+TGG 0.503646 7_3:-54930035 None:intergenic
CGGTCATCCAAATGTTGATA+CGG 0.514501 7_3:+54929937 Msa1110230:CDS
TGTATTCTCACCTAGTGAAA+AGG 0.515766 7_3:+54929904 Msa1110230:CDS
TAGAAACTTCAATAGAATCC+GGG 0.517746 7_3:-54930442 None:intergenic
GTTGATAGGAGTGCAATTCA+GGG 0.537321 7_3:+54930241 Msa1110230:CDS
ATTGGCTTCAACAATATGGA+AGG 0.538957 7_3:+54930403 Msa1110230:CDS
GCTTTGAGAAAGTCACTTGG+AGG 0.544594 7_3:-54929814 None:intergenic
GTCATAGATCGCTATCTCTG+TGG 0.549804 7_3:+54929959 Msa1110230:CDS
TTGTTGAAGCCAATTAAATG+AGG 0.551491 7_3:-54930394 None:intergenic
GAAAACATCTCAGTTTGTTG+AGG 0.554882 7_3:-54930340 None:intergenic
CTTTCTCAAAGCGTCGTAGT+GGG 0.584950 7_3:+54929825 Msa1110230:CDS
AATCAACAACACACTGGACG+AGG 0.587728 7_3:+54930069 Msa1110230:CDS
ATGAGCCTCAATGAATTCCA+TGG 0.597814 7_3:-54930005 None:intergenic
TTCAACAATATGGAAGGAGG+AGG 0.598809 7_3:+54930409 Msa1110230:CDS
ACTTTCTCAAAGCGTCGTAG+TGG 0.602122 7_3:+54929824 Msa1110230:CDS
GACGCTTTGAGAAAGTCACT+TGG 0.608413 7_3:-54929817 None:intergenic
TCGAGCGGAAAGAAAGGTCG+TGG 0.610361 7_3:+54929749 Msa1110230:CDS
AGAAACTTCAATAGAATCCG+GGG 0.619380 7_3:-54930441 None:intergenic
GGATTTGGCTGATAATGGAG+AGG 0.633381 7_3:-54930319 None:intergenic
GGCTTCAACAATATGGAAGG+AGG 0.642874 7_3:+54930406 Msa1110230:CDS
GTTTCAAATCAACAACACAC+TGG 0.650841 7_3:+54930063 Msa1110230:CDS
CAGCACCATGGAATTCATTG+AGG 0.664382 7_3:+54930000 Msa1110230:CDS
ACCGCAAAACAACAGCACCA+TGG 0.667033 7_3:+54929988 Msa1110230:CDS
TGTACTTCAACCATGTCGAG+CGG 0.669543 7_3:+54929734 None:intergenic
GAAACTTCAATAGAATCCGG+GGG 0.679421 7_3:-54930440 None:intergenic
GATTTGGCTGATAATGGAGA+GGG 0.685158 7_3:-54930318 None:intergenic
CATAGATCGCTATCTCTGTG+GGG 0.721259 7_3:+54929961 Msa1110230:CDS
AAACTTCAATAGAATCCGGG+GGG 0.771286 7_3:-54930439 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTATTCAAGAAGATTT+TGG + chr7_3:54930189-54930208 Msa1110230:CDS 20.0%
!! AAATAATTACCAACAGAAAA+TGG - chr7_3:54930286-54930305 None:intergenic 20.0%
!! ATTATTCAAGAAGATTTTGG+TGG + chr7_3:54930192-54930211 Msa1110230:CDS 25.0%
! ATAGGGTTATGAAAAATTTG+TGG - chr7_3:54930367-54930386 None:intergenic 25.0%
!! TTTAATTGGCTTCAACAATA+TGG + chr7_3:54930399-54930418 Msa1110230:CDS 25.0%
!! TCTTTTTCATCTCGATCTTT+TGG - chr7_3:54929778-54929797 None:intergenic 30.0%
! AAAGAAAACACCTTTTCACT+AGG - chr7_3:54929917-54929936 None:intergenic 30.0%
!!! AGTGAAAAGGTGTTTTCTTT+CGG + chr7_3:54929917-54929936 Msa1110230:CDS 30.0%
TCCAATTGATGGAATGAATA+GGG + chr7_3:54930159-54930178 Msa1110230:CDS 30.0%
TTAAATGAGGTTGCAACATA+GGG - chr7_3:54930384-54930403 None:intergenic 30.0%
ATTAAATGAGGTTGCAACAT+AGG - chr7_3:54930385-54930404 None:intergenic 30.0%
ATGTTGCAACCTCATTTAAT+TGG + chr7_3:54930385-54930404 Msa1110230:CDS 30.0%
TTGTTGAAGCCAATTAAATG+AGG - chr7_3:54930397-54930416 None:intergenic 30.0%
TGTATTCTCACCTAGTGAAA+AGG + chr7_3:54929904-54929923 Msa1110230:CDS 35.0%
TCTATGACCGTATCAACATT+TGG - chr7_3:54929947-54929966 None:intergenic 35.0%
GTTTCAAATCAACAACACAC+TGG + chr7_3:54930063-54930082 Msa1110230:CDS 35.0%
GTCCAATTGATGGAATGAAT+AGG + chr7_3:54930158-54930177 Msa1110230:CDS 35.0%
TTGTTGCTCAACATGTTGAT+AGG + chr7_3:54930227-54930246 Msa1110230:CDS 35.0%
! CACACTTTTCCATTTTCTGT+TGG + chr7_3:54930274-54930293 Msa1110230:CDS 35.0%
!! ATCTCAGTTTGTTGAGGATT+TGG - chr7_3:54930337-54930356 None:intergenic 35.0%
!! GAAAACATCTCAGTTTGTTG+AGG - chr7_3:54930343-54930362 None:intergenic 35.0%
! ATTGGCTTCAACAATATGGA+AGG + chr7_3:54930403-54930422 Msa1110230:CDS 35.0%
AATGAGCTTTGCACTCTTTG+TGG + chr7_3:54929863-54929882 Msa1110230:CDS 40.0%
CGGTCATCCAAATGTTGATA+CGG + chr7_3:54929937-54929956 Msa1110230:CDS 40.0%
TCATAGATCGCTATCTCTGT+GGG + chr7_3:54929960-54929979 Msa1110230:CDS 40.0%
ATGAGCCTCAATGAATTCCA+TGG - chr7_3:54930008-54930027 None:intergenic 40.0%
!! TGAGTTGAGCCTTTTATGCA+AGG + chr7_3:54930108-54930127 Msa1110230:CDS 40.0%
!! GTTGAAGGCTCAATTTTGGT+GGG + chr7_3:54930132-54930151 Msa1110230:CDS 40.0%
GCCCTATTCATTCCATCAAT+TGG - chr7_3:54930163-54930182 None:intergenic 40.0%
! TGTTGATAGGAGTGCAATTC+AGG + chr7_3:54930240-54930259 Msa1110230:CDS 40.0%
! GTTGATAGGAGTGCAATTCA+GGG + chr7_3:54930241-54930260 Msa1110230:CDS 40.0%
! ATAATGGAGAGGGATGTTAG+AGG - chr7_3:54930311-54930330 None:intergenic 40.0%
!! GATTTGGCTGATAATGGAGA+GGG - chr7_3:54930321-54930340 None:intergenic 40.0%
GTTGAGGATTTGGCTGATAA+TGG - chr7_3:54930327-54930346 None:intergenic 40.0%
TTCAACAATATGGAAGGAGG+AGG + chr7_3:54930409-54930428 Msa1110230:CDS 40.0%
AATATGGAAGGAGGAGGATA+TGG + chr7_3:54930415-54930434 Msa1110230:CDS 40.0%
!! GCTTTGAGAAAGTCACTTGG+AGG - chr7_3:54929817-54929836 None:intergenic 45.0%
!! GACGCTTTGAGAAAGTCACT+TGG - chr7_3:54929820-54929839 None:intergenic 45.0%
!! ACTTTCTCAAAGCGTCGTAG+TGG + chr7_3:54929824-54929843 Msa1110230:CDS 45.0%
!! CTTTCTCAAAGCGTCGTAGT+GGG + chr7_3:54929825-54929844 Msa1110230:CDS 45.0%
GTCATAGATCGCTATCTCTG+TGG + chr7_3:54929959-54929978 Msa1110230:CDS 45.0%
CATAGATCGCTATCTCTGTG+GGG + chr7_3:54929961-54929980 Msa1110230:CDS 45.0%
!!! TCCATGGTGCTGTTGTTTTG+CGG - chr7_3:54929992-54930011 None:intergenic 45.0%
CAGCACCATGGAATTCATTG+AGG + chr7_3:54930000-54930019 Msa1110230:CDS 45.0%
AATCAACAACACACTGGACG+AGG + chr7_3:54930069-54930088 Msa1110230:CDS 45.0%
CCTTCAACGCCTTGCATAAA+AGG - chr7_3:54930120-54930139 None:intergenic 45.0%
!!! CCTTTTATGCAAGGCGTTGA+AGG + chr7_3:54930117-54930136 Msa1110230:CDS 45.0%
!!! AGGCGTTGAAGGCTCAATTT+TGG + chr7_3:54930128-54930147 Msa1110230:CDS 45.0%
! CGTTGAAGGCTCAATTTTGG+TGG + chr7_3:54930131-54930150 Msa1110230:CDS 45.0%
!! GGATTTGGCTGATAATGGAG+AGG - chr7_3:54930322-54930341 None:intergenic 45.0%
GGCTTCAACAATATGGAAGG+AGG + chr7_3:54930406-54930425 Msa1110230:CDS 45.0%
CACTTGGAGGTTGCTCTCAT+TGG - chr7_3:54929804-54929823 None:intergenic 50.0%
!!! TGGTGCTGTTGTTTTGCGGT+GGG - chr7_3:54929988-54930007 None:intergenic 50.0%
!!! ATGGTGCTGTTGTTTTGCGG+TGG - chr7_3:54929989-54930008 None:intergenic 50.0%
ACCGCAAAACAACAGCACCA+TGG + chr7_3:54929988-54930007 Msa1110230:CDS 50.0%
! AGCATTGAGCTCACGCACTT+TGG - chr7_3:54930038-54930057 None:intergenic 50.0%
! TGGTGGGCATGTCCAATTGA+TGG + chr7_3:54930148-54930167 Msa1110230:CDS 50.0%
TCGAGCGGAAAGAAAGGTCG+TGG + chr7_3:54929749-54929768 Msa1110230:CDS 55.0%
CTGGACGAGGAGAAAAAGCG+TGG + chr7_3:54930082-54930101 Msa1110230:CDS 55.0%
GGAGGAGGATATGGACCCCC+CGG + chr7_3:54930424-54930443 Msa1110230:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 54929746 54930456 54929746 ID=Msa1110230;Name=Msa1110230
chr7_3 mRNA 54929746 54930456 54929746 ID=Msa1110230-mRNA-1;Parent=Msa1110230;Name=Msa1110230-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|236
chr7_3 exon 54929746 54930456 54929746 ID=Msa1110230-mRNA-1:exon:11559;Parent=Msa1110230-mRNA-1
chr7_3 CDS 54929746 54930456 54929746 ID=Msa1110230-mRNA-1:cds;Parent=Msa1110230-mRNA-1
Gene Sequence

>Msa1110230

ATGTCGAGCGGAAAGAAAGGTCGTGGTAGCCAAAAGATCGAGATGAAAAAGATGACCAATGAGAGCAACCTCCAAGTGACTTTCTCAAAGCGTCGTAGTGGGCTCTTCAAGAAAGTCAATGAGCTTTGCACTCTTTGTGGTGTAGATGTTGCTCTCGTTGTATTCTCACCTAGTGAAAAGGTGTTTTCTTTCGGTCATCCAAATGTTGATACGGTCATAGATCGCTATCTCTGTGGGGTCCCACCGCAAAACAACAGCACCATGGAATTCATTGAGGCTCATCGTAGCGCCAAAGTGCGTGAGCTCAATGCTGAGTTGTTTCAAATCAACAACACACTGGACGAGGAGAAAAAGCGTGGTGATGAGTTGAGCCTTTTATGCAAGGCGTTGAAGGCTCAATTTTGGTGGGCATGTCCAATTGATGGAATGAATAGGGCTCAGCTTGAATTATTCAAGAAGATTTTGGTGGAGCTTAAGAAACTTGTTGCTCAACATGTTGATAGGAGTGCAATTCAGGGTGCATTTGCTCACACTTTTCCATTTTCTGTTGGTAATTATTTATCCTCTAACATCCCTCTCCATTATCAGCCAAATCCTCAACAAACTGAGATGTTTTCGCCACAAATTTTTCATAACCCTATGTTGCAACCTCATTTAATTGGCTTCAACAATATGGAAGGAGGAGGATATGGACCCCCCGGATTCTATTGA
Protein sequence

>Msa1110230

MSSGKKGRGSQKIEMKKMTNESNLQVTFSKRRSGLFKKVNELCTLCGVDVALVVFSPSEKVFSFGHPNVDTVIDRYLCGVPPQNNSTMEFIEAHRSAKVRELNAELFQINNTLDEEKKRGDELSLLCKALKAQFWWACPIDGMNRAQLELFKKILVELKKLVAQHVDRSAIQGAFAHTFPFSVGNYLSSNIPLHYQPNPQQTEMFSPQIFHNPMLQPHLIGFNNMEGGGYGPPGFY*