Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110340 | AES79839.1 | 94.659 | 337 | 17 | 1 | 1 | 336 | 17 | 353 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110340 | sp|Q5CCK4|VAL2_ARATH | 45.373 | 335 | 146 | 7 | 24 | 325 | 203 | 533 | 4.66e-82 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110340 | G7KY51 | 94.659 | 337 | 17 | 1 | 1 | 336 | 17 | 353 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1110340 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110340 | MtrunA17_Chr2g0281191 | 43.871 | 310 | 138 | 5 | 73 | 346 | 320 | 629 | 2.64e-73 | 244 |
| Msa1110340 | MtrunA17_Chr4g0012861 | 53.302 | 212 | 96 | 2 | 1 | 212 | 213 | 421 | 8.43e-61 | 209 |
| Msa1110340 | MtrunA17_Chr4g0012861 | 51.471 | 136 | 52 | 3 | 214 | 336 | 484 | 618 | 1.38e-36 | 140 |
| Msa1110340 | MtrunA17_Chr7g0244881 | 92.784 | 97 | 7 | 0 | 1 | 97 | 17 | 113 | 1.15e-60 | 191 |
| Msa1110340 | MtrunA17_Chr7g0244871 | 94.681 | 94 | 5 | 0 | 97 | 190 | 4 | 97 | 2.22e-60 | 189 |
| Msa1110340 | MtrunA17_Chr3g0107701 | 46.781 | 233 | 111 | 8 | 1 | 225 | 233 | 460 | 3.47e-54 | 191 |
| Msa1110340 | MtrunA17_Chr3g0107701 | 49.587 | 121 | 48 | 2 | 229 | 336 | 522 | 642 | 2.49e-28 | 116 |
| Msa1110340 | MtrunA17_Chr5g0432721 | 48.649 | 185 | 90 | 3 | 36 | 219 | 254 | 434 | 1.05e-50 | 181 |
| Msa1110340 | MtrunA17_Chr5g0432721 | 55.556 | 72 | 31 | 1 | 231 | 301 | 507 | 578 | 1.18e-17 | 84.7 |
| Msa1110340 | MtrunA17_Chr7g0251891 | 38.835 | 103 | 62 | 1 | 105 | 206 | 16 | 118 | 5.31e-18 | 81.6 |
| Msa1110340 | MtrunA17_Chr1g0178071 | 38.129 | 139 | 65 | 6 | 82 | 206 | 50 | 181 | 3.81e-16 | 78.6 |
| Msa1110340 | MtrunA17_Chr7g0237841 | 42.353 | 85 | 48 | 1 | 105 | 188 | 623 | 707 | 4.27e-16 | 79.7 |
| Msa1110340 | MtrunA17_Chr7g0266821 | 41.905 | 105 | 55 | 4 | 110 | 210 | 65 | 167 | 3.92e-14 | 72.4 |
| Msa1110340 | MtrunA17_Chr8g0345771 | 40.000 | 110 | 56 | 5 | 105 | 207 | 171 | 277 | 1.09e-13 | 72.0 |
| Msa1110340 | MtrunA17_Chr7g0276471 | 40.659 | 91 | 49 | 3 | 105 | 192 | 117 | 205 | 4.29e-13 | 70.1 |
| Msa1110340 | MtrunA17_Chr5g0422501 | 38.333 | 120 | 59 | 5 | 105 | 211 | 235 | 352 | 5.32e-13 | 69.7 |
| Msa1110340 | MtrunA17_Chr1g0198661 | 34.641 | 153 | 69 | 7 | 92 | 215 | 168 | 318 | 2.98e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1110340 | AT4G32010.2 | 45.921 | 331 | 146 | 6 | 24 | 325 | 203 | 529 | 6.09e-85 | 273 |
| Msa1110340 | AT4G32010.1 | 45.373 | 335 | 146 | 7 | 24 | 325 | 203 | 533 | 4.74e-83 | 268 |
| Msa1110340 | AT2G30470.1 | 42.059 | 340 | 148 | 6 | 34 | 325 | 218 | 556 | 1.21e-72 | 241 |
| Msa1110340 | AT4G21550.3 | 38.849 | 278 | 149 | 7 | 38 | 299 | 254 | 526 | 1.72e-48 | 172 |
| Msa1110340 | AT4G21550.1 | 44.053 | 227 | 116 | 4 | 84 | 301 | 304 | 528 | 2.50e-43 | 160 |
| Msa1110340 | AT4G21550.2 | 37.879 | 264 | 143 | 7 | 38 | 285 | 254 | 512 | 1.48e-42 | 155 |
| Msa1110340 | AT3G26790.1 | 40.385 | 104 | 61 | 1 | 105 | 207 | 91 | 194 | 4.10e-18 | 84.3 |
| Msa1110340 | AT1G28300.1 | 39.669 | 121 | 69 | 3 | 72 | 189 | 136 | 255 | 7.19e-17 | 81.3 |
| Msa1110340 | AT3G24650.1 | 42.857 | 98 | 54 | 2 | 105 | 200 | 571 | 668 | 1.47e-16 | 81.6 |
| Msa1110340 | AT5G06250.4 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 5.78e-15 | 74.7 |
| Msa1110340 | AT5G06250.5 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 6.06e-15 | 74.7 |
| Msa1110340 | AT2G36080.4 | 41.818 | 110 | 54 | 4 | 105 | 206 | 37 | 144 | 6.98e-15 | 72.4 |
| Msa1110340 | AT2G36080.2 | 41.818 | 110 | 54 | 4 | 105 | 206 | 37 | 144 | 6.98e-15 | 72.4 |
| Msa1110340 | AT5G06250.2 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 7.16e-15 | 74.7 |
| Msa1110340 | AT5G06250.3 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 7.53e-15 | 74.3 |
| Msa1110340 | AT2G36080.3 | 41.818 | 110 | 54 | 4 | 105 | 206 | 37 | 144 | 8.00e-15 | 73.6 |
| Msa1110340 | AT2G36080.1 | 41.818 | 110 | 54 | 4 | 105 | 206 | 37 | 144 | 8.22e-15 | 73.9 |
| Msa1110340 | AT5G06250.1 | 39.695 | 131 | 60 | 5 | 105 | 218 | 45 | 173 | 9.97e-15 | 73.9 |
| Msa1110340 | AT1G13260.1 | 38.983 | 118 | 65 | 5 | 104 | 216 | 186 | 301 | 1.45e-14 | 74.3 |
| Msa1110340 | AT1G68840.2 | 44.086 | 93 | 45 | 4 | 105 | 192 | 187 | 277 | 4.59e-14 | 73.2 |
| Msa1110340 | AT1G68840.1 | 44.086 | 93 | 45 | 4 | 105 | 192 | 187 | 277 | 4.59e-14 | 73.2 |
| Msa1110340 | AT3G25730.1 | 37.815 | 119 | 65 | 5 | 105 | 216 | 182 | 298 | 4.80e-14 | 72.8 |
| Msa1110340 | AT2G46870.1 | 38.393 | 112 | 59 | 5 | 105 | 208 | 34 | 143 | 1.14e-13 | 71.2 |
| Msa1110340 | AT3G11580.4 | 38.136 | 118 | 55 | 4 | 105 | 206 | 28 | 143 | 1.22e-13 | 70.1 |
| Msa1110340 | AT3G11580.2 | 38.136 | 118 | 55 | 4 | 105 | 206 | 28 | 143 | 1.22e-13 | 70.1 |
| Msa1110340 | AT3G11580.5 | 38.136 | 118 | 55 | 4 | 105 | 206 | 28 | 143 | 1.22e-13 | 70.1 |
| Msa1110340 | AT3G11580.1 | 38.136 | 118 | 55 | 4 | 105 | 206 | 28 | 143 | 2.98e-13 | 69.7 |
| Msa1110340 | AT1G01030.2 | 34.351 | 131 | 71 | 6 | 105 | 222 | 55 | 183 | 8.73e-13 | 68.9 |
| Msa1110340 | AT1G01030.1 | 36.441 | 118 | 65 | 5 | 105 | 214 | 55 | 170 | 1.72e-12 | 68.2 |
| Msa1110340 | AT1G25560.1 | 39.655 | 116 | 55 | 6 | 105 | 207 | 194 | 307 | 2.09e-12 | 68.2 |
| Msa1110340 | AT3G11580.3 | 38.136 | 118 | 55 | 4 | 105 | 206 | 28 | 143 | 2.12e-12 | 68.2 |
| Msa1110340 | AT4G01500.1 | 39.326 | 89 | 51 | 2 | 105 | 192 | 35 | 121 | 5.86e-12 | 66.6 |
| Msa1110340 | AT3G61970.1 | 36.607 | 112 | 61 | 5 | 105 | 208 | 22 | 131 | 6.99e-12 | 65.9 |
Find 75 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGCAAGTTGGAGATTT+TGG | 0.162855 | 7_3:-55148242 | Msa1110340:intron |
| TGGAATCTGTGGAGAATTTA+TGG | 0.172380 | 7_3:-55146824 | Msa1110340:CDS |
| CAAGAATTACAACAATTATT+TGG | 0.177297 | 7_3:-55148888 | Msa1110340:CDS |
| TATATCCTGCTGCTATTATT+TGG | 0.179530 | 7_3:+55148302 | None:intergenic |
| TGGTGTTTAAATTTAGATTT+TGG | 0.182651 | 7_3:-55148325 | Msa1110340:CDS |
| CTTACTTCAACACATGATTT+TGG | 0.195081 | 7_3:+55148513 | None:intergenic |
| TGTTTCCTTTGTCGTCTTAC+AGG | 0.195568 | 7_3:+55148945 | None:intergenic |
| AAGAAGGGTATATTCATAAA+TGG | 0.214466 | 7_3:-55147232 | Msa1110340:CDS |
| ATGACCTTTAATACTCCTTT+TGG | 0.228375 | 7_3:-55149152 | Msa1110340:CDS |
| GGCTCTCCCTCTGAGAGATT+TGG | 0.271633 | 7_3:+55149074 | None:intergenic |
| AATTCTTGATCGGTAATCTT+AGG | 0.277029 | 7_3:+55148903 | None:intergenic |
| GTTTCAGCATCAATGCTTCT+TGG | 0.288269 | 7_3:+55147631 | None:intergenic |
| CATTGATGCTGAAACTTACT+TGG | 0.297346 | 7_3:-55147623 | Msa1110340:CDS |
| ATTTCCAAAAGGAGTATTAA+AGG | 0.297494 | 7_3:+55149148 | None:intergenic |
| TTCCTTGCGACATGATGAAT+TGG | 0.372803 | 7_3:+55148972 | None:intergenic |
| TTTGGAAATTCAAATTCCTT+TGG | 0.374583 | 7_3:-55149134 | Msa1110340:CDS |
| ATACCCTTCTTTGCAATGAT+AGG | 0.386942 | 7_3:+55147244 | None:intergenic |
| AATTTGCAGTAACATTTAAC+CGG | 0.402045 | 7_3:-55148074 | Msa1110340:intron |
| TTCAAACATTGTAGTGATTG+AGG | 0.405228 | 7_3:-55147559 | Msa1110340:CDS |
| CTCAATAGCAAGAGTTGACT+TGG | 0.413822 | 7_3:+55149022 | None:intergenic |
| GGAATCTGTGGAGAATTTAT+GGG | 0.424748 | 7_3:-55146823 | Msa1110340:CDS |
| TGCAAAAGATTCTGAGACTT+AGG | 0.426953 | 7_3:+55149053 | None:intergenic |
| AGACGTGAAAGGGAAGAAAT+TGG | 0.434182 | 7_3:-55148345 | Msa1110340:CDS |
| GGAAATTCAAATTCCTTTGG+TGG | 0.453203 | 7_3:-55149131 | Msa1110340:CDS |
| AGAAGGGTATATTCATAAAT+GGG | 0.456876 | 7_3:-55147231 | Msa1110340:intron |
| TACAAATCGAAGACGTGAAA+GGG | 0.459274 | 7_3:-55148355 | Msa1110340:CDS |
| GTTAATGTCTTCTCGAATAG+TGG | 0.460753 | 7_3:+55148573 | None:intergenic |
| AATAACATTGCTATGTCTAA+AGG | 0.470824 | 7_3:-55147756 | Msa1110340:CDS |
| AAGGAATTTGAATTTCCAAA+AGG | 0.480284 | 7_3:+55149137 | None:intergenic |
| ATGTTTGAATTAACCGTTGG+AGG | 0.487413 | 7_3:+55147573 | None:intergenic |
| GTTCTTTGCATAGATCATAT+AGG | 0.488449 | 7_3:+55146421 | None:intergenic |
| GTGCTCAGAATGGAGAAAGT+TGG | 0.489559 | 7_3:-55146844 | Msa1110340:CDS |
| ATATGATCTATGCAAAGAAC+TGG | 0.492044 | 7_3:-55146418 | Msa1110340:CDS |
| GCTAGTGATGTTGGTCGACT+TGG | 0.492614 | 7_3:-55148549 | Msa1110340:CDS |
| GGCATCGGTTTCTTCTCTAC+AGG | 0.493803 | 7_3:-55148013 | Msa1110340:intron |
| ACCTCCTATCATTGCAAAGA+AGG | 0.496773 | 7_3:-55147248 | Msa1110340:CDS |
| CCCTTCTTTGCAATGATAGG+AGG | 0.497014 | 7_3:+55147247 | None:intergenic |
| TGCAGTAACATTTAACCGGA+TGG | 0.497340 | 7_3:-55148070 | Msa1110340:intron |
| TGTTGGTCGACTTGGTCGCA+TGG | 0.503887 | 7_3:-55148541 | Msa1110340:CDS |
| AACTGATAATATGGTTTCGA+AGG | 0.505578 | 7_3:-55148035 | Msa1110340:CDS |
| TTTCCACCTATTTCGGAACC+AGG | 0.514336 | 7_3:-55148389 | Msa1110340:CDS |
| AACATTTAACCGGATGGACC+CGG | 0.514859 | 7_3:-55148064 | Msa1110340:CDS |
| TTTGGCCAAATAATAGCAGC+AGG | 0.517585 | 7_3:-55148307 | Msa1110340:CDS |
| CATATTATCAGTTTCTCCCC+CGG | 0.525325 | 7_3:+55148045 | None:intergenic |
| ACAATGTTTGAATTAACCGT+TGG | 0.525500 | 7_3:+55147570 | None:intergenic |
| ATGGAGAAAGTTGGAATCTG+TGG | 0.530973 | 7_3:-55146835 | Msa1110340:CDS |
| TAATTGTTGTAATTCTTGAT+CGG | 0.531695 | 7_3:+55148893 | None:intergenic |
| TTAGGAATTACTAGCTCTTG+TGG | 0.532779 | 7_3:+55147708 | None:intergenic |
| CAGTCTATGCAATTGCAAGT+TGG | 0.537113 | 7_3:-55148251 | Msa1110340:CDS |
| ACATTAACTGCTAGTGATGT+TGG | 0.541192 | 7_3:-55148558 | Msa1110340:CDS |
| TTCCACCTATTTCGGAACCA+GGG | 0.543683 | 7_3:-55148388 | Msa1110340:CDS |
| AGAATTTATGGGGTCAAAGA+AGG | 0.549360 | 7_3:-55146812 | Msa1110340:intron |
| ACATTTAACCGGATGGACCC+GGG | 0.549810 | 7_3:-55148063 | Msa1110340:CDS |
| AATATGGTTTCGAAGGGCAT+CGG | 0.550897 | 7_3:-55148028 | Msa1110340:CDS |
| TTACAAATCGAAGACGTGAA+AGG | 0.557247 | 7_3:-55148356 | Msa1110340:CDS |
| TTTGAATTAACCGTTGGAGG+TGG | 0.560511 | 7_3:+55147576 | None:intergenic |
| TTCAATTCCAAATCTCTCAG+AGG | 0.562873 | 7_3:-55149081 | Msa1110340:CDS |
| ACCATAGGATGAACGAGCAA+TGG | 0.564796 | 7_3:-55146881 | Msa1110340:intron |
| GCTGAAACTTACTTGGGAAG+AGG | 0.565759 | 7_3:-55147616 | Msa1110340:CDS |
| CCTCCTATCATTGCAAAGAA+GGG | 0.572822 | 7_3:-55147247 | Msa1110340:CDS |
| ATTGATGCTGAAACTTACTT+GGG | 0.573068 | 7_3:-55147622 | Msa1110340:CDS |
| TCAATTCCAAATCTCTCAGA+GGG | 0.577689 | 7_3:-55149080 | Msa1110340:CDS |
| AATTCAAATTCCTTTGGTGG+TGG | 0.581836 | 7_3:-55149128 | Msa1110340:CDS |
| CTCCAATTCATCATGTCGCA+AGG | 0.583526 | 7_3:-55148974 | Msa1110340:CDS |
| AGTGTGAGAAGTGCTCAGAA+TGG | 0.598771 | 7_3:-55146854 | Msa1110340:CDS |
| CTCGAATAGTGGCACAATGG+CGG | 0.604126 | 7_3:+55148584 | None:intergenic |
| TCCACCTATTTCGGAACCAG+GGG | 0.606854 | 7_3:-55148387 | Msa1110340:CDS |
| CATTTAACCGGATGGACCCG+GGG | 0.615232 | 7_3:-55148062 | Msa1110340:CDS |
| ACTGATAATATGGTTTCGAA+GGG | 0.615913 | 7_3:-55148034 | Msa1110340:CDS |
| GAATCTGTGGAGAATTTATG+GGG | 0.628808 | 7_3:-55146822 | Msa1110340:CDS |
| TCAATAGCAAGAGTTGACTT+GGG | 0.655637 | 7_3:+55149023 | None:intergenic |
| AATCGCCTGTAAGACGACAA+AGG | 0.682009 | 7_3:-55148950 | Msa1110340:CDS |
| CTTCTCGAATAGTGGCACAA+TGG | 0.682280 | 7_3:+55148581 | None:intergenic |
| CCACCTATTTCGGAACCAGG+GGG | 0.686812 | 7_3:-55148386 | Msa1110340:CDS |
| ATTTAACCGGATGGACCCGG+GGG | 0.732920 | 7_3:-55148061 | Msa1110340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAATATAAAATAAAATG+AGG | + | chr7_3:55146853-55146872 | None:intergenic | 10.0% |
| !! | ATTATCATAAATACAAAAAT+AGG | + | chr7_3:55147747-55147766 | None:intergenic | 10.0% |
| !!! | TTTTTATGAAATTCTTTATT+TGG | - | chr7_3:55148062-55148081 | Msa1110340:CDS | 10.0% |
| !!! | AAATCTTTGAATATTTTTAT+TGG | - | chr7_3:55148231-55148250 | Msa1110340:intron | 10.0% |
| !! | AATGATAAAAAAATAGTATA+GGG | + | chr7_3:55148424-55148443 | None:intergenic | 10.0% |
| !! | TAATGATAAAAAAATAGTAT+AGG | + | chr7_3:55148425-55148444 | None:intergenic | 10.0% |
| !!! | TTTACTAAACTTTTCATTAT+AGG | - | chr7_3:55146689-55146708 | Msa1110340:intron | 15.0% |
| !! | AAAGATTTATCATCAAATAT+TGG | + | chr7_3:55147086-55147105 | None:intergenic | 15.0% |
| !! | TTCATCAAAATAAACTTTAT+AGG | - | chr7_3:55148110-55148129 | Msa1110340:intron | 15.0% |
| !! | TAAACTTTATAGGAATAATA+TGG | - | chr7_3:55148120-55148139 | Msa1110340:intron | 15.0% |
| !!! | AAAAGTTTCATAATTTTGTA+AGG | + | chr7_3:55148392-55148411 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTTAAATATGTTG+AGG | + | chr7_3:55148454-55148473 | None:intergenic | 15.0% |
| !! | CAACATATTTAAAAAAAACA+TGG | - | chr7_3:55148454-55148473 | Msa1110340:intron | 15.0% |
| !!! | ATTGATAATATTGTTTTGAT+TGG | - | chr7_3:55149058-55149077 | Msa1110340:CDS | 15.0% |
| !! | TAATTGTTGTAATTCTTGAT+CGG | + | chr7_3:55146650-55146669 | None:intergenic | 20.0% |
| !! | CAAGAATTACAACAATTATT+TGG | - | chr7_3:55146652-55146671 | Msa1110340:intron | 20.0% |
| !! | TGAAAAGTTTAGTAAAGTAA+TGG | + | chr7_3:55146685-55146704 | None:intergenic | 20.0% |
| !! | TTATACAACAGTAAATTGAA+CGG | + | chr7_3:55146779-55146798 | None:intergenic | 20.0% |
| !!! | TGGTGTTTAAATTTAGATTT+TGG | - | chr7_3:55147215-55147234 | Msa1110340:intron | 20.0% |
| !! | GTATATGAAAAAAGTAACAT+TGG | + | chr7_3:55147374-55147393 | None:intergenic | 20.0% |
| !!! | TTATGTATATTTCTATCCAT+AGG | + | chr7_3:55147427-55147446 | None:intergenic | 20.0% |
| !!! | ACTGCAAATTTTTTTGTAAA+AGG | + | chr7_3:55147456-55147475 | None:intergenic | 20.0% |
| !!! | AATATTTTTATTGGTGTTGA+TGG | - | chr7_3:55148240-55148259 | Msa1110340:intron | 20.0% |
| !! | CATGAAATACTTTATATTTC+TGG | - | chr7_3:55148755-55148774 | Msa1110340:intron | 20.0% |
| !!! | AATAAATCTTGATTTTTGCA+AGG | - | chr7_3:55148793-55148812 | Msa1110340:intron | 20.0% |
| !!! | TAATCTTTTGAAAATGAACA+AGG | - | chr7_3:55148889-55148908 | Msa1110340:CDS | 20.0% |
| !! | GTATTCATATATCTCATTAT+CGG | + | chr7_3:55149015-55149034 | None:intergenic | 20.0% |
| !!! | ATTTCCAAAAGGAGTATTAA+AGG | + | chr7_3:55146395-55146414 | None:intergenic | 25.0% |
| ! | AAGGAATTTGAATTTCCAAA+AGG | + | chr7_3:55146406-55146425 | None:intergenic | 25.0% |
| ! | TTTGGAAATTCAAATTCCTT+TGG | - | chr7_3:55146406-55146425 | Msa1110340:CDS | 25.0% |
| !! | TTTAAGCTTTAACACATCAT+TGG | + | chr7_3:55146934-55146953 | None:intergenic | 25.0% |
| !!! | TAATTTGTTAGAACTGAAAG+TGG | - | chr7_3:55147109-55147128 | Msa1110340:intron | 25.0% |
| ! | AAAAAAGTAACATTGGCATA+TGG | + | chr7_3:55147367-55147386 | None:intergenic | 25.0% |
| ! | TTATTATTTCACTGTCATGT+AGG | - | chr7_3:55147395-55147414 | Msa1110340:intron | 25.0% |
| ! | AATTTGCAGTAACATTTAAC+CGG | - | chr7_3:55147466-55147485 | Msa1110340:intron | 25.0% |
| ! | ATGATAATTTATTTCCCACT+AGG | - | chr7_3:55147759-55147778 | Msa1110340:CDS | 25.0% |
| ! | AATAACATTGCTATGTCTAA+AGG | - | chr7_3:55147784-55147803 | Msa1110340:intron | 25.0% |
| !! | ATGAAATTCTTTATTTGGTG+AGG | - | chr7_3:55148067-55148086 | Msa1110340:CDS | 25.0% |
| !! | ATGGTGACATTTCAATTTTA+AGG | - | chr7_3:55148139-55148158 | Msa1110340:intron | 25.0% |
| ! | AACTATACTAAAATTGATGC+AGG | - | chr7_3:55148268-55148287 | Msa1110340:CDS | 25.0% |
| !! | AAGAAGGGTATATTCATAAA+TGG | - | chr7_3:55148308-55148327 | Msa1110340:CDS | 25.0% |
| !! | AGAAGGGTATATTCATAAAT+GGG | - | chr7_3:55148309-55148328 | Msa1110340:CDS | 25.0% |
| !! | TGATTTTTGCAAGGTTTTTA+AGG | - | chr7_3:55148802-55148821 | Msa1110340:intron | 25.0% |
| !! | ATAGGTCAAAGTCTTTTTAA+TGG | + | chr7_3:55149104-55149123 | None:intergenic | 25.0% |
| ! | ATGACCTTTAATACTCCTTT+TGG | - | chr7_3:55146388-55146407 | Msa1110340:CDS | 30.0% |
| AATTCTTGATCGGTAATCTT+AGG | + | chr7_3:55146640-55146659 | None:intergenic | 30.0% | |
| ! | TAGGTCAAATGTTTTATGCT+AGG | - | chr7_3:55146708-55146727 | Msa1110340:intron | 30.0% |
| GTTTGTATGATTAGTACTCT+TGG | - | chr7_3:55146885-55146904 | Msa1110340:intron | 30.0% | |
| ! | CTTTAACACATCATTGGTTA+TGG | + | chr7_3:55146928-55146947 | None:intergenic | 30.0% |
| ! | CTTACTTCAACACATGATTT+TGG | + | chr7_3:55147030-55147049 | None:intergenic | 30.0% |
| ! | GACATATTTTCCACCTATTT+CGG | - | chr7_3:55147144-55147163 | Msa1110340:intron | 30.0% |
| ATTTGTAAATAAATACCCCC+TGG | + | chr7_3:55147172-55147191 | None:intergenic | 30.0% | |
| TATATCCTGCTGCTATTATT+TGG | + | chr7_3:55147241-55147260 | None:intergenic | 30.0% | |
| !! | AGCAGGATATATGTTTTAGA+AGG | - | chr7_3:55147250-55147269 | Msa1110340:CDS | 30.0% |
| ! | AATTGCTATTGAACTATGAG+TGG | + | chr7_3:55147337-55147356 | None:intergenic | 30.0% |
| AACTGATAATATGGTTTCGA+AGG | - | chr7_3:55147505-55147524 | Msa1110340:intron | 30.0% | |
| ACTGATAATATGGTTTCGAA+GGG | - | chr7_3:55147506-55147525 | Msa1110340:intron | 30.0% | |
| ! | TTTCTGCAATGTGTTATTAG+TGG | - | chr7_3:55147637-55147656 | Msa1110340:CDS | 30.0% |
| ATAGGAAGTTTCATTTCAGT+TGG | + | chr7_3:55147729-55147748 | None:intergenic | 30.0% | |
| ! | TCACATGTTCTTTTCTTCTT+AGG | + | chr7_3:55147853-55147872 | None:intergenic | 30.0% |
| ATTGATGCTGAAACTTACTT+GGG | - | chr7_3:55147918-55147937 | Msa1110340:intron | 30.0% | |
| ACAATGTTTGAATTAACCGT+TGG | + | chr7_3:55147973-55147992 | None:intergenic | 30.0% | |
| TTCAAACATTGTAGTGATTG+AGG | - | chr7_3:55147981-55148000 | Msa1110340:intron | 30.0% | |
| ! | AAACGCCTTTTATAAGATCA+GGG | + | chr7_3:55148512-55148531 | None:intergenic | 30.0% |
| ! | AAAACGCCTTTTATAAGATC+AGG | + | chr7_3:55148513-55148532 | None:intergenic | 30.0% |
| TTGACTTCTCTATTAGAAGT+TGG | + | chr7_3:55148590-55148609 | None:intergenic | 30.0% | |
| GTTCTTTGCATAGATCATAT+AGG | + | chr7_3:55149122-55149141 | None:intergenic | 30.0% | |
| ATATGATCTATGCAAAGAAC+TGG | - | chr7_3:55149122-55149141 | Msa1110340:CDS | 30.0% | |
| GGAAATTCAAATTCCTTTGG+TGG | - | chr7_3:55146409-55146428 | Msa1110340:CDS | 35.0% | |
| AATTCAAATTCCTTTGGTGG+TGG | - | chr7_3:55146412-55146431 | Msa1110340:CDS | 35.0% | |
| TTCAATTCCAAATCTCTCAG+AGG | - | chr7_3:55146459-55146478 | Msa1110340:intron | 35.0% | |
| TCAATTCCAAATCTCTCAGA+GGG | - | chr7_3:55146460-55146479 | Msa1110340:intron | 35.0% | |
| !! | TGCAAAAGATTCTGAGACTT+AGG | + | chr7_3:55146490-55146509 | None:intergenic | 35.0% |
| ! | TCAATAGCAAGAGTTGACTT+GGG | + | chr7_3:55146520-55146539 | None:intergenic | 35.0% |
| GTTAATGTCTTCTCGAATAG+TGG | + | chr7_3:55146970-55146989 | None:intergenic | 35.0% | |
| ACATTAACTGCTAGTGATGT+TGG | - | chr7_3:55146982-55147001 | Msa1110340:intron | 35.0% | |
| TTACAAATCGAAGACGTGAA+AGG | - | chr7_3:55147184-55147203 | Msa1110340:intron | 35.0% | |
| TACAAATCGAAGACGTGAAA+GGG | - | chr7_3:55147185-55147204 | Msa1110340:intron | 35.0% | |
| !! | TTTTAGAAGGAGTACATGCT+TGG | - | chr7_3:55147263-55147282 | Msa1110340:intron | 35.0% |
| !! | CAATTGCAAGTTGGAGATTT+TGG | - | chr7_3:55147298-55147317 | Msa1110340:intron | 35.0% |
| ! | CATGTGTCTAATTTGTCCTA+TGG | - | chr7_3:55147701-55147720 | Msa1110340:CDS | 35.0% |
| AGCAATGTTATTCACCTAGT+GGG | + | chr7_3:55147776-55147795 | None:intergenic | 35.0% | |
| TAGCAATGTTATTCACCTAG+TGG | + | chr7_3:55147777-55147796 | None:intergenic | 35.0% | |
| ! | TTAGGAATTACTAGCTCTTG+TGG | + | chr7_3:55147835-55147854 | None:intergenic | 35.0% |
| CATTGATGCTGAAACTTACT+TGG | - | chr7_3:55147917-55147936 | Msa1110340:intron | 35.0% | |
| ATGTTTGAATTAACCGTTGG+AGG | + | chr7_3:55147970-55147989 | None:intergenic | 35.0% | |
| ATACCCTTCTTTGCAATGAT+AGG | + | chr7_3:55148299-55148318 | None:intergenic | 35.0% | |
| ATGCACCCTGATCTTATAAA+AGG | - | chr7_3:55148504-55148523 | Msa1110340:intron | 35.0% | |
| ATGCTTTGTGATTGAACCAT+AGG | - | chr7_3:55148644-55148663 | Msa1110340:intron | 35.0% | |
| TGGAATCTGTGGAGAATTTA+TGG | - | chr7_3:55148716-55148735 | Msa1110340:intron | 35.0% | |
| GGAATCTGTGGAGAATTTAT+GGG | - | chr7_3:55148717-55148736 | Msa1110340:intron | 35.0% | |
| GAATCTGTGGAGAATTTATG+GGG | - | chr7_3:55148718-55148737 | Msa1110340:intron | 35.0% | |
| AGAATTTATGGGGTCAAAGA+AGG | - | chr7_3:55148728-55148747 | Msa1110340:intron | 35.0% | |
| !! | AAGGTTTTGTATGCTGTATC+AGG | - | chr7_3:55148821-55148840 | Msa1110340:intron | 35.0% |
| CTCAATAGCAAGAGTTGACT+TGG | + | chr7_3:55146521-55146540 | None:intergenic | 40.0% | |
| GTCAGAGAAAAATGTGTGCA+TGG | - | chr7_3:55146540-55146559 | Msa1110340:intron | 40.0% | |
| TTCCTTGCGACATGATGAAT+TGG | + | chr7_3:55146571-55146590 | None:intergenic | 40.0% | |
| TGTTTCCTTTGTCGTCTTAC+AGG | + | chr7_3:55146598-55146617 | None:intergenic | 40.0% | |
| AGACGTGAAAGGGAAGAAAT+TGG | - | chr7_3:55147195-55147214 | Msa1110340:intron | 40.0% | |
| TTTGGCCAAATAATAGCAGC+AGG | - | chr7_3:55147233-55147252 | Msa1110340:CDS | 40.0% | |
| CAGTCTATGCAATTGCAAGT+TGG | - | chr7_3:55147289-55147308 | Msa1110340:intron | 40.0% | |
| TGCAGTAACATTTAACCGGA+TGG | - | chr7_3:55147470-55147489 | Msa1110340:intron | 40.0% | |
| ATATTATCAGTTTCTCCCCC+GGG | + | chr7_3:55147497-55147516 | None:intergenic | 40.0% | |
| CATATTATCAGTTTCTCCCC+CGG | + | chr7_3:55147498-55147517 | None:intergenic | 40.0% | |
| ! | AATATGGTTTCGAAGGGCAT+CGG | - | chr7_3:55147512-55147531 | Msa1110340:intron | 40.0% |
| CGCTTAAGAATGCACAAATG+TGG | - | chr7_3:55147583-55147602 | Msa1110340:CDS | 40.0% | |
| TTCATTTCAGTTGGAGCCAT+AGG | + | chr7_3:55147720-55147739 | None:intergenic | 40.0% | |
| GTTTCAGCATCAATGCTTCT+TGG | + | chr7_3:55147912-55147931 | None:intergenic | 40.0% | |
| ! | TTTTCTTCATCCACCTCCAA+CGG | - | chr7_3:55147954-55147973 | Msa1110340:intron | 40.0% |
| TTTGAATTAACCGTTGGAGG+TGG | + | chr7_3:55147967-55147986 | None:intergenic | 40.0% | |
| ACCTCCTATCATTGCAAAGA+AGG | - | chr7_3:55148292-55148311 | Msa1110340:CDS | 40.0% | |
| CCTCCTATCATTGCAAAGAA+GGG | - | chr7_3:55148293-55148312 | Msa1110340:CDS | 40.0% | |
| GGTGCATTTAGTCTCACAAT+AGG | + | chr7_3:55148491-55148510 | None:intergenic | 40.0% | |
| ATGGAGAAAGTTGGAATCTG+TGG | - | chr7_3:55148705-55148724 | Msa1110340:intron | 40.0% | |
| AGATTATCCAAGTTCCCCTT+AGG | + | chr7_3:55148875-55148894 | None:intergenic | 40.0% | |
| !! | TTGCTTTTCACCACCACCAA+AGG | + | chr7_3:55146425-55146444 | None:intergenic | 45.0% |
| CTCCAATTCATCATGTCGCA+AGG | - | chr7_3:55146566-55146585 | Msa1110340:intron | 45.0% | |
| AATCGCCTGTAAGACGACAA+AGG | - | chr7_3:55146590-55146609 | Msa1110340:intron | 45.0% | |
| CTTCTCGAATAGTGGCACAA+TGG | + | chr7_3:55146962-55146981 | None:intergenic | 45.0% | |
| TTTCCACCTATTTCGGAACC+AGG | - | chr7_3:55147151-55147170 | Msa1110340:intron | 45.0% | |
| TTCCACCTATTTCGGAACCA+GGG | - | chr7_3:55147152-55147171 | Msa1110340:intron | 45.0% | |
| GTCATGTAGGCTCAAACCTA+TGG | - | chr7_3:55147408-55147427 | Msa1110340:intron | 45.0% | |
| AACATTTAACCGGATGGACC+CGG | - | chr7_3:55147476-55147495 | Msa1110340:intron | 45.0% | |
| CGGGGGAGAAACTGATAATA+TGG | - | chr7_3:55147496-55147515 | Msa1110340:intron | 45.0% | |
| GCTGAAACTTACTTGGGAAG+AGG | - | chr7_3:55147924-55147943 | Msa1110340:intron | 45.0% | |
| CCCTTCTTTGCAATGATAGG+AGG | + | chr7_3:55148296-55148315 | None:intergenic | 45.0% | |
| ACCATAGGATGAACGAGCAA+TGG | - | chr7_3:55148659-55148678 | Msa1110340:intron | 45.0% | |
| TCCATTGCTCGTTCATCCTA+TGG | + | chr7_3:55148663-55148682 | None:intergenic | 45.0% | |
| !! | AGTGTGAGAAGTGCTCAGAA+TGG | - | chr7_3:55148686-55148705 | Msa1110340:intron | 45.0% |
| GTGCTCAGAATGGAGAAAGT+TGG | - | chr7_3:55148696-55148715 | Msa1110340:intron | 45.0% | |
| ! | CTCCCATGAGTTGAACCTAA+GGG | - | chr7_3:55148857-55148876 | Msa1110340:intron | 45.0% |
| ! | TCCCATGAGTTGAACCTAAG+GGG | - | chr7_3:55148858-55148877 | Msa1110340:intron | 45.0% |
| TCCCCTTAGGTTCAACTCAT+GGG | + | chr7_3:55148862-55148881 | None:intergenic | 45.0% | |
| TTCCCCTTAGGTTCAACTCA+TGG | + | chr7_3:55148863-55148882 | None:intergenic | 45.0% | |
| AGTTGAACCTAAGGGGAACT+TGG | - | chr7_3:55148865-55148884 | Msa1110340:intron | 45.0% | |
| CTCGAATAGTGGCACAATGG+CGG | + | chr7_3:55146959-55146978 | None:intergenic | 50.0% | |
| GCTAGTGATGTTGGTCGACT+TGG | - | chr7_3:55146991-55147010 | Msa1110340:intron | 50.0% | |
| TCCACCTATTTCGGAACCAG+GGG | - | chr7_3:55147153-55147172 | Msa1110340:intron | 50.0% | |
| ATACCCCCTGGTTCCGAAAT+AGG | + | chr7_3:55147160-55147179 | None:intergenic | 50.0% | |
| ACATTTAACCGGATGGACCC+GGG | - | chr7_3:55147477-55147496 | Msa1110340:intron | 50.0% | |
| !! | GGCATCGGTTTCTTCTCTAC+AGG | - | chr7_3:55147527-55147546 | Msa1110340:intron | 50.0% |
| ! | GCTCCCATGAGTTGAACCTA+AGG | - | chr7_3:55148856-55148875 | Msa1110340:intron | 50.0% |
| ! | GGCTCTCCCTCTGAGAGATT+TGG | + | chr7_3:55146469-55146488 | None:intergenic | 55.0% |
| !! | TGTTGGTCGACTTGGTCGCA+TGG | - | chr7_3:55146999-55147018 | Msa1110340:intron | 55.0% |
| CCACCTATTTCGGAACCAGG+GGG | - | chr7_3:55147154-55147173 | Msa1110340:intron | 55.0% | |
| CATTTAACCGGATGGACCCG+GGG | - | chr7_3:55147478-55147497 | Msa1110340:intron | 55.0% | |
| ATTTAACCGGATGGACCCGG+GGG | - | chr7_3:55147479-55147498 | Msa1110340:intron | 55.0% | |
| CCCCCTGGTTCCGAAATAGG+TGG | + | chr7_3:55147157-55147176 | None:intergenic | 60.0% | |
| GTTTCTCCCCCGGGTCCATC+CGG | + | chr7_3:55147488-55147507 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 55146388 | 55149174 | 55146388 | ID=Msa1110340;Name=Msa1110340 |
| chr7_3 | mRNA | 55146388 | 55149174 | 55146388 | ID=Msa1110340-mRNA-1;Parent=Msa1110340;Name=Msa1110340-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.87|1|1|8|0|363 |
| chr7_3 | exon | 55148885 | 55149174 | 55148885 | ID=Msa1110340-mRNA-1:exon:11615;Parent=Msa1110340-mRNA-1 |
| chr7_3 | exon | 55148518 | 55148614 | 55148518 | ID=Msa1110340-mRNA-1:exon:11614;Parent=Msa1110340-mRNA-1 |
| chr7_3 | exon | 55148243 | 55148417 | 55148243 | ID=Msa1110340-mRNA-1:exon:11613;Parent=Msa1110340-mRNA-1 |
| chr7_3 | exon | 55148014 | 55148087 | 55148014 | ID=Msa1110340-mRNA-1:exon:11612;Parent=Msa1110340-mRNA-1 |
| chr7_3 | exon | 55147536 | 55147781 | 55147536 | ID=Msa1110340-mRNA-1:exon:11611;Parent=Msa1110340-mRNA-1 |
| chr7_3 | exon | 55147232 | 55147272 | 55147232 | ID=Msa1110340-mRNA-1:exon:11610;Parent=Msa1110340-mRNA-1 |
| chr7_3 | exon | 55146813 | 55146896 | 55146813 | ID=Msa1110340-mRNA-1:exon:11609;Parent=Msa1110340-mRNA-1 |
| chr7_3 | exon | 55146388 | 55146472 | 55146388 | ID=Msa1110340-mRNA-1:exon:11608;Parent=Msa1110340-mRNA-1 |
| chr7_3 | CDS | 55148885 | 55149174 | 55148885 | ID=Msa1110340-mRNA-1:cds;Parent=Msa1110340-mRNA-1 |
| chr7_3 | CDS | 55148518 | 55148614 | 55148518 | ID=Msa1110340-mRNA-1:cds;Parent=Msa1110340-mRNA-1 |
| chr7_3 | CDS | 55148243 | 55148417 | 55148243 | ID=Msa1110340-mRNA-1:cds;Parent=Msa1110340-mRNA-1 |
| chr7_3 | CDS | 55148014 | 55148087 | 55148014 | ID=Msa1110340-mRNA-1:cds;Parent=Msa1110340-mRNA-1 |
| chr7_3 | CDS | 55147536 | 55147781 | 55147536 | ID=Msa1110340-mRNA-1:cds;Parent=Msa1110340-mRNA-1 |
| chr7_3 | CDS | 55147232 | 55147272 | 55147232 | ID=Msa1110340-mRNA-1:cds;Parent=Msa1110340-mRNA-1 |
| chr7_3 | CDS | 55146813 | 55146896 | 55146813 | ID=Msa1110340-mRNA-1:cds;Parent=Msa1110340-mRNA-1 |
| chr7_3 | CDS | 55146388 | 55146472 | 55146388 | ID=Msa1110340-mRNA-1:cds;Parent=Msa1110340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
