Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1111030 | XP_003623743.1 | 96.447 | 197 | 7 | 0 | 1 | 197 | 1 | 197 | 3.67e-138 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1111030 | sp|O22132|LBD19_ARATH | 71.429 | 119 | 31 | 3 | 15 | 132 | 19 | 135 | 5.61e-52 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1111030 | G7L0B7 | 96.447 | 197 | 7 | 0 | 1 | 197 | 1 | 197 | 1.75e-138 | 394 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1111030 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1111030 | MtrunA17_Chr7g0245861 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 5.44e-71 | 212 |
| Msa1111030 | MtrunA17_Chr8g0351721 | 62.312 | 199 | 62 | 6 | 4 | 197 | 10 | 200 | 5.27e-70 | 212 |
| Msa1111030 | MtrunA17_Chr8g0351701 | 72.642 | 106 | 27 | 2 | 11 | 116 | 22 | 125 | 4.38e-52 | 167 |
| Msa1111030 | MtrunA17_Chr7g0245871 | 67.619 | 105 | 32 | 2 | 12 | 116 | 27 | 129 | 4.65e-46 | 152 |
| Msa1111030 | MtrunA17_Chr7g0261031 | 65.546 | 119 | 36 | 4 | 10 | 125 | 6 | 122 | 1.39e-45 | 150 |
| Msa1111030 | MtrunA17_Chr1g0184271 | 53.472 | 144 | 59 | 4 | 12 | 151 | 12 | 151 | 3.56e-45 | 149 |
| Msa1111030 | MtrunA17_Chr7g0260971 | 65.487 | 113 | 37 | 2 | 4 | 116 | 6 | 116 | 2.36e-44 | 147 |
| Msa1111030 | MtrunA17_Chr1g0184281 | 44.809 | 183 | 87 | 4 | 10 | 182 | 13 | 191 | 4.86e-42 | 140 |
| Msa1111030 | MtrunA17_Chr6g0460951 | 62.385 | 109 | 37 | 3 | 12 | 120 | 40 | 144 | 8.51e-40 | 135 |
| Msa1111030 | MtrunA17_Chr5g0435641 | 61.616 | 99 | 36 | 2 | 10 | 108 | 5 | 101 | 2.64e-39 | 133 |
| Msa1111030 | MtrunA17_Chr5g0437571 | 51.938 | 129 | 55 | 3 | 9 | 133 | 3 | 128 | 2.42e-36 | 124 |
| Msa1111030 | MtrunA17_Chr3g0114061 | 50.000 | 126 | 60 | 2 | 6 | 131 | 2 | 124 | 5.16e-35 | 121 |
| Msa1111030 | MtrunA17_Chr2g0311601 | 53.509 | 114 | 44 | 3 | 8 | 115 | 3 | 113 | 9.17e-34 | 117 |
| Msa1111030 | MtrunA17_Chr7g0227511 | 53.043 | 115 | 51 | 2 | 12 | 126 | 11 | 122 | 7.34e-33 | 115 |
| Msa1111030 | MtrunA17_Chr3g0106101 | 51.402 | 107 | 49 | 2 | 9 | 115 | 4 | 107 | 3.27e-32 | 114 |
| Msa1111030 | MtrunA17_Chr4g0058651 | 58.586 | 99 | 38 | 2 | 10 | 108 | 9 | 104 | 1.21e-31 | 113 |
| Msa1111030 | MtrunA17_Chr4g0043421 | 48.485 | 132 | 64 | 3 | 12 | 142 | 15 | 143 | 1.99e-31 | 112 |
| Msa1111030 | MtrunA17_Chr3g0117121 | 55.660 | 106 | 44 | 2 | 10 | 115 | 8 | 110 | 2.33e-31 | 112 |
| Msa1111030 | MtrunA17_Chr4g0030001 | 42.208 | 154 | 72 | 4 | 11 | 150 | 23 | 173 | 3.05e-31 | 112 |
| Msa1111030 | MtrunA17_Chr6g0449641 | 53.704 | 108 | 47 | 2 | 12 | 119 | 9 | 113 | 3.15e-31 | 110 |
| Msa1111030 | MtrunA17_Chr5g0437401 | 51.923 | 104 | 47 | 2 | 13 | 116 | 12 | 112 | 1.80e-30 | 110 |
| Msa1111030 | MtrunA17_Chr5g0438091 | 43.038 | 158 | 78 | 5 | 12 | 162 | 39 | 191 | 5.75e-29 | 106 |
| Msa1111030 | MtrunA17_Chr3g0097221 | 52.778 | 108 | 48 | 2 | 12 | 119 | 7 | 111 | 1.50e-28 | 108 |
| Msa1111030 | MtrunA17_Chr6g0449651 | 50.943 | 106 | 49 | 2 | 10 | 115 | 65 | 167 | 6.74e-28 | 103 |
| Msa1111030 | MtrunA17_Chr3g0115431 | 50.926 | 108 | 50 | 2 | 9 | 116 | 6 | 110 | 1.49e-27 | 103 |
| Msa1111030 | MtrunA17_Chr3g0113891 | 50.000 | 100 | 47 | 2 | 13 | 112 | 15 | 111 | 1.65e-27 | 102 |
| Msa1111030 | MtrunA17_Chr5g0402611 | 52.381 | 105 | 47 | 2 | 12 | 116 | 8 | 109 | 3.09e-27 | 105 |
| Msa1111030 | MtrunA17_Chr1g0200201 | 50.485 | 103 | 48 | 2 | 13 | 115 | 73 | 172 | 9.86e-27 | 101 |
| Msa1111030 | MtrunA17_Chr3g0129071 | 50.962 | 104 | 48 | 2 | 12 | 115 | 47 | 147 | 1.09e-26 | 102 |
| Msa1111030 | MtrunA17_Chr6g0460941 | 54.255 | 94 | 41 | 2 | 8 | 101 | 3 | 94 | 1.83e-26 | 97.4 |
| Msa1111030 | MtrunA17_Chr5g0432451 | 53.846 | 104 | 45 | 2 | 12 | 115 | 43 | 143 | 6.53e-23 | 92.0 |
| Msa1111030 | MtrunA17_Chr5g0444351 | 42.453 | 106 | 58 | 2 | 11 | 116 | 4 | 106 | 1.99e-22 | 88.2 |
| Msa1111030 | MtrunA17_Chr8g0353981 | 49.550 | 111 | 53 | 2 | 12 | 122 | 7 | 114 | 1.06e-21 | 88.6 |
| Msa1111030 | MtrunA17_Chr7g0225111 | 38.462 | 104 | 61 | 2 | 13 | 116 | 6 | 106 | 2.88e-20 | 82.0 |
| Msa1111030 | MtrunA17_Chr8g0374601 | 39.048 | 105 | 61 | 2 | 12 | 116 | 26 | 127 | 2.26e-17 | 78.2 |
| Msa1111030 | MtrunA17_Chr8g0374591 | 40.952 | 105 | 59 | 2 | 12 | 116 | 8 | 109 | 7.78e-17 | 73.6 |
| Msa1111030 | MtrunA17_Chr8g0342351 | 37.736 | 106 | 63 | 2 | 13 | 118 | 13 | 115 | 1.12e-15 | 73.2 |
| Msa1111030 | MtrunA17_Chr2g0330201 | 37.143 | 105 | 63 | 2 | 13 | 117 | 20 | 121 | 1.70e-15 | 73.2 |
| Msa1111030 | MtrunA17_Chr6g0452691 | 39.623 | 106 | 60 | 3 | 13 | 117 | 10 | 112 | 3.11e-15 | 70.5 |
| Msa1111030 | MtrunA17_Chr4g0040831 | 34.043 | 141 | 81 | 4 | 13 | 151 | 16 | 146 | 3.52e-15 | 70.9 |
| Msa1111030 | MtrunA17_Chr8g0374581 | 36.538 | 104 | 64 | 1 | 12 | 115 | 8 | 109 | 8.04e-15 | 70.1 |
| Msa1111030 | MtrunA17_Chr4g0059901 | 37.143 | 105 | 63 | 2 | 13 | 117 | 11 | 112 | 1.57e-14 | 70.1 |
| Msa1111030 | MtrunA17_Chr6g0452671 | 33.929 | 112 | 70 | 3 | 1 | 112 | 1 | 108 | 1.59e-13 | 66.2 |
| Msa1111030 | MtrunA17_Chr6g0452661 | 34.906 | 106 | 58 | 5 | 13 | 110 | 10 | 112 | 2.51e-12 | 63.5 |
| Msa1111030 | MtrunA17_Chr2g0326051 | 51.786 | 56 | 27 | 0 | 60 | 115 | 5 | 60 | 1.51e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1111030 | AT2G45410.1 | 71.429 | 119 | 31 | 3 | 15 | 132 | 19 | 135 | 5.71e-53 | 168 |
| Msa1111030 | AT4G00210.1 | 63.971 | 136 | 43 | 3 | 10 | 141 | 9 | 142 | 7.88e-53 | 169 |
| Msa1111030 | AT2G45420.1 | 75.238 | 105 | 24 | 2 | 15 | 119 | 40 | 142 | 1.80e-48 | 159 |
| Msa1111030 | AT4G00220.1 | 50.256 | 195 | 74 | 7 | 15 | 197 | 20 | 203 | 1.39e-45 | 150 |
| Msa1111030 | AT3G03760.1 | 68.468 | 111 | 32 | 3 | 12 | 122 | 51 | 158 | 5.27e-45 | 150 |
| Msa1111030 | AT3G58190.1 | 57.851 | 121 | 49 | 2 | 12 | 132 | 11 | 129 | 1.01e-44 | 148 |
| Msa1111030 | AT2G42430.1 | 56.934 | 137 | 48 | 4 | 10 | 137 | 13 | 147 | 1.90e-43 | 145 |
| Msa1111030 | AT2G42440.1 | 55.200 | 125 | 49 | 3 | 10 | 129 | 5 | 127 | 1.36e-42 | 143 |
| Msa1111030 | AT5G06080.1 | 48.684 | 152 | 63 | 4 | 10 | 151 | 5 | 151 | 6.42e-41 | 137 |
| Msa1111030 | AT2G31310.1 | 58.879 | 107 | 42 | 2 | 10 | 116 | 5 | 109 | 1.68e-39 | 134 |
| Msa1111030 | AT2G30130.1 | 50.407 | 123 | 57 | 3 | 6 | 128 | 2 | 120 | 9.66e-34 | 119 |
| Msa1111030 | AT5G63090.4 | 57.143 | 105 | 42 | 2 | 12 | 116 | 11 | 112 | 2.33e-31 | 112 |
| Msa1111030 | AT5G63090.3 | 57.143 | 105 | 42 | 2 | 12 | 116 | 11 | 112 | 2.33e-31 | 112 |
| Msa1111030 | AT5G63090.2 | 57.143 | 105 | 42 | 2 | 12 | 116 | 11 | 112 | 2.33e-31 | 112 |
| Msa1111030 | AT5G63090.1 | 57.143 | 105 | 42 | 2 | 12 | 116 | 11 | 112 | 2.33e-31 | 112 |
| Msa1111030 | AT1G16530.1 | 47.656 | 128 | 59 | 3 | 11 | 135 | 13 | 135 | 2.84e-31 | 112 |
| Msa1111030 | AT3G27650.1 | 53.846 | 104 | 45 | 2 | 12 | 115 | 39 | 139 | 3.42e-30 | 109 |
| Msa1111030 | AT1G07900.1 | 40.741 | 162 | 82 | 5 | 11 | 164 | 32 | 187 | 9.79e-30 | 108 |
| Msa1111030 | AT3G11090.1 | 40.260 | 154 | 86 | 3 | 13 | 163 | 12 | 162 | 2.80e-29 | 107 |
| Msa1111030 | AT2G28500.1 | 50.962 | 104 | 48 | 2 | 12 | 115 | 55 | 155 | 9.72e-29 | 107 |
| Msa1111030 | AT5G66870.1 | 49.635 | 137 | 54 | 5 | 12 | 136 | 7 | 140 | 6.18e-28 | 107 |
| Msa1111030 | AT1G31320.1 | 53.333 | 90 | 39 | 2 | 12 | 101 | 13 | 99 | 9.12e-28 | 103 |
| Msa1111030 | AT3G26660.1 | 44.762 | 105 | 55 | 2 | 13 | 117 | 6 | 107 | 2.70e-27 | 100 |
| Msa1111030 | AT3G26620.1 | 44.762 | 105 | 55 | 2 | 13 | 117 | 6 | 107 | 4.34e-27 | 100 |
| Msa1111030 | AT2G23660.2 | 47.115 | 104 | 52 | 2 | 12 | 115 | 5 | 105 | 4.53e-25 | 99.8 |
| Msa1111030 | AT2G23660.3 | 47.115 | 104 | 52 | 2 | 12 | 115 | 5 | 105 | 4.53e-25 | 99.8 |
| Msa1111030 | AT2G23660.1 | 47.115 | 104 | 52 | 2 | 12 | 115 | 5 | 105 | 4.53e-25 | 99.8 |
| Msa1111030 | AT2G30340.1 | 48.077 | 104 | 51 | 2 | 12 | 115 | 52 | 152 | 1.31e-24 | 97.4 |
| Msa1111030 | AT2G30340.2 | 48.077 | 104 | 51 | 2 | 12 | 115 | 53 | 153 | 1.47e-24 | 97.4 |
| Msa1111030 | AT3G50510.1 | 43.636 | 110 | 59 | 2 | 7 | 116 | 7 | 113 | 4.18e-23 | 92.0 |
| Msa1111030 | AT3G50510.2 | 43.636 | 110 | 59 | 2 | 7 | 116 | 7 | 113 | 4.18e-23 | 92.0 |
| Msa1111030 | AT2G40470.1 | 52.885 | 104 | 46 | 2 | 12 | 115 | 45 | 145 | 6.63e-22 | 89.4 |
| Msa1111030 | AT2G40470.2 | 52.885 | 104 | 46 | 2 | 12 | 115 | 20 | 120 | 6.72e-22 | 89.0 |
| Msa1111030 | AT1G65620.1 | 52.381 | 105 | 47 | 2 | 12 | 116 | 9 | 110 | 7.96e-22 | 88.6 |
| Msa1111030 | AT1G65620.4 | 52.381 | 105 | 47 | 2 | 12 | 116 | 9 | 110 | 7.96e-22 | 88.6 |
| Msa1111030 | AT1G65620.3 | 52.381 | 105 | 47 | 2 | 12 | 116 | 9 | 110 | 7.96e-22 | 88.6 |
| Msa1111030 | AT1G65620.5 | 52.381 | 105 | 47 | 2 | 12 | 116 | 9 | 110 | 7.96e-22 | 88.6 |
| Msa1111030 | AT1G65620.2 | 52.381 | 105 | 47 | 2 | 12 | 116 | 9 | 110 | 7.96e-22 | 88.6 |
| Msa1111030 | AT3G13850.1 | 32.500 | 160 | 101 | 4 | 13 | 168 | 37 | 193 | 1.11e-15 | 73.6 |
| Msa1111030 | AT1G72980.1 | 35.772 | 123 | 74 | 3 | 9 | 129 | 8 | 127 | 2.26e-15 | 72.0 |
| Msa1111030 | AT5G35900.1 | 33.043 | 115 | 74 | 2 | 13 | 127 | 6 | 117 | 4.30e-15 | 70.9 |
| Msa1111030 | AT1G06280.1 | 41.558 | 77 | 42 | 2 | 13 | 89 | 25 | 98 | 2.90e-12 | 63.2 |
| Msa1111030 | AT3G47870.1 | 29.907 | 107 | 72 | 2 | 11 | 117 | 35 | 138 | 3.21e-12 | 64.3 |
Find 37 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGCTACTGATCCTGTTTA+TGG | 0.249229 | 7_3:-56552231 | Msa1111030:CDS |
| TTAGAGAGAGAGATGGATTT+GGG | 0.271089 | 7_3:-56552486 | None:intergenic |
| TTTAGAGAGAGAGATGGATT+TGG | 0.290229 | 7_3:-56552487 | None:intergenic |
| TAGGCAAAGCTTGGAATTCC+TGG | 0.335459 | 7_3:+56549661 | None:intergenic |
| GGATGTGGGGATGACGGTGG+TGG | 0.364421 | 7_3:-56552465 | Msa1111030:CDS |
| TGACCTGATGACTCAAAATA+TGG | 0.381006 | 7_3:+56552381 | None:intergenic |
| AGAGAGATGGATTTGGGATG+TGG | 0.394313 | 7_3:-56552480 | None:intergenic |
| CTTTGAGGCTGTTGAAATTG+AGG | 0.406522 | 7_3:+56549849 | None:intergenic |
| GCTGCAGTTCATAAGGTGTT+TGG | 0.429613 | 7_3:-56552342 | Msa1111030:CDS |
| GCATCAAGACGCTTATGAAC+TGG | 0.441293 | 7_3:+56552285 | None:intergenic |
| GAGAGATGGATTTGGGATGT+GGG | 0.451155 | 7_3:-56552479 | None:intergenic |
| GTGAGGATGAATGCAAAGTT+GGG | 0.461415 | 7_3:+56549814 | None:intergenic |
| TGAGCAACACAACCATAAAC+AGG | 0.465740 | 7_3:+56552219 | None:intergenic |
| GCGATTCAATATTGAAAGAC+GGG | 0.465789 | 7_3:+56549884 | None:intergenic |
| AGTGAGGATGAATGCAAAGT+TGG | 0.469384 | 7_3:+56549813 | None:intergenic |
| TTGGGATGTGGGGATGACGG+TGG | 0.470548 | 7_3:-56552468 | Msa1111030:CDS |
| GATTTGGGATGTGGGGATGA+CGG | 0.487399 | 7_3:-56552471 | Msa1111030:CDS |
| AAAATTCTCTAGGCAAAGCT+TGG | 0.490828 | 7_3:+56549652 | None:intergenic |
| TCTGCTATGAGGCTCTTGCT+AGG | 0.495453 | 7_3:-56552251 | Msa1111030:CDS |
| CTGCTATGAGGCTCTTGCTA+GGG | 0.502068 | 7_3:-56552250 | Msa1111030:CDS |
| TCTTACATGTCCATGCACTT+TGG | 0.510678 | 7_3:-56549762 | Msa1111030:CDS |
| GATGTGGGGATGACGGTGGT+GGG | 0.515639 | 7_3:-56552464 | Msa1111030:CDS |
| ATTGAAAGCTAAAATTCTCT+AGG | 0.516519 | 7_3:+56549642 | None:intergenic |
| TGAAAGACGGGCTTGTACAT+AGG | 0.516839 | 7_3:+56549896 | None:intergenic |
| GGGGATGTTGAAGAGCTTTG+AGG | 0.529675 | 7_3:+56549834 | None:intergenic |
| TGTTGTTACTCTCTGCTATG+AGG | 0.534536 | 7_3:-56552262 | Msa1111030:CDS |
| TTGAGGAGAAAGTGTGTGAA+AGG | 0.541257 | 7_3:-56552420 | Msa1111030:CDS |
| TGATGATAGGAATAGTATGA+TGG | 0.565940 | 7_3:+56549696 | None:intergenic |
| TGCGATTCAATATTGAAAGA+CGG | 0.566372 | 7_3:+56549883 | None:intergenic |
| GATGACGGTGGTGGGCCTTG+TGG | 0.575954 | 7_3:-56552456 | Msa1111030:CDS |
| GTCATGAAGTTGTTGATGAT+AGG | 0.590256 | 7_3:+56549683 | None:intergenic |
| AGAGATGGATTTGGGATGTG+GGG | 0.590943 | 7_3:-56552478 | None:intergenic |
| AAGAGGATGACCAAAGTGCA+TGG | 0.603188 | 7_3:+56549752 | None:intergenic |
| GGATGATATTGAAGTTGAAG+AGG | 0.622419 | 7_3:+56549735 | None:intergenic |
| TCATCAACAACTTCATGACC+AGG | 0.628553 | 7_3:-56549679 | Msa1111030:CDS |
| TGAGGATGAATGCAAAGTTG+GGG | 0.656574 | 7_3:+56549815 | None:intergenic |
| TGATGACAAATGATGAAGTG+AGG | 0.675536 | 7_3:+56549797 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTTTGGAAAATAAAT+AGG | + | chr7_3:56550270-56550289 | None:intergenic | 10.0% |
| !!! | AAATAGGATTTATATTATTT+TGG | + | chr7_3:56550282-56550301 | None:intergenic | 10.0% |
| !! | AAGAATATTATTGATAAAAT+AGG | + | chr7_3:56550298-56550317 | None:intergenic | 10.0% |
| !!! | ATTTTATCAATAATATTCTT+TGG | - | chr7_3:56550298-56550317 | Msa1111030:intron | 10.0% |
| !!! | TTTTTTTTTTTCTTTTTTTC+TGG | + | chr7_3:56550442-56550461 | None:intergenic | 10.0% |
| !! | AGAAAAAAAGAAAAAAAAAA+AGG | - | chr7_3:56550441-56550460 | Msa1111030:intron | 10.0% |
| !! | TTAAAAATAGGAAATATAAT+AGG | + | chr7_3:56551007-56551026 | None:intergenic | 10.0% |
| !!! | TATTATATTTCCTATTTTTA+AGG | - | chr7_3:56551006-56551025 | Msa1111030:intron | 10.0% |
| !! | TTATATACTTAATTAATTAC+AGG | - | chr7_3:56552181-56552200 | Msa1111030:intron | 10.0% |
| !! | TATATATATACGAATTAGTT+AGG | + | chr7_3:56550024-56550043 | None:intergenic | 15.0% |
| !! | TAATTCGTATATATATAACT+TGG | - | chr7_3:56550027-56550046 | Msa1111030:intron | 15.0% |
| !! | ATTCAAGAAAAACTTATAAT+AGG | - | chr7_3:56550147-56550166 | Msa1111030:intron | 15.0% |
| !! | TAAATAGGATTTATATTGTT+TGG | + | chr7_3:56550255-56550274 | None:intergenic | 15.0% |
| !!! | ATGCAATGTAAAATAAATTT+TGG | + | chr7_3:56550673-56550692 | None:intergenic | 15.0% |
| !!! | AGTTTATTAAATTTTATTCC+CGG | - | chr7_3:56550888-56550907 | Msa1111030:intron | 15.0% |
| !! | GTTAATATTATAATATTCCA+AGG | + | chr7_3:56551034-56551053 | None:intergenic | 15.0% |
| !! | TATTTAGAAAAAAAGATGTT+TGG | + | chr7_3:56551056-56551075 | None:intergenic | 15.0% |
| !!! | TGACTTATATAATGTTATTT+GGG | + | chr7_3:56551501-56551520 | None:intergenic | 15.0% |
| !! | ATGACTTATATAATGTTATT+TGG | + | chr7_3:56551502-56551521 | None:intergenic | 15.0% |
| !! | AGAAGAATGGTTTAATAAAT+TGG | - | chr7_3:56550322-56550341 | Msa1111030:intron | 20.0% |
| !! | AATTAAATAAGTATCCTAAC+TGG | - | chr7_3:56550386-56550405 | Msa1111030:intron | 20.0% |
| !!! | TATATTGCTTTAATTTGTTC+AGG | + | chr7_3:56550548-56550567 | None:intergenic | 20.0% |
| !!! | ATTTTTATGATTTTATTCCC+AGG | + | chr7_3:56550846-56550865 | None:intergenic | 20.0% |
| !! | AATAAACTTGTAACAAACAT+AGG | + | chr7_3:56550876-56550895 | None:intergenic | 20.0% |
| !!! | GTTTATTAAATTTTATTCCC+GGG | - | chr7_3:56550889-56550908 | Msa1111030:intron | 20.0% |
| !!! | ATCTTTTTTTCTAAATACCT+TGG | - | chr7_3:56551059-56551078 | Msa1111030:intron | 20.0% |
| !!! | TCAAAGGCATAATATAATTA+AGG | - | chr7_3:56551172-56551191 | Msa1111030:intron | 20.0% |
| !! | AAATGTTAATAGTACCTTTA+GGG | - | chr7_3:56551368-56551387 | Msa1111030:intron | 20.0% |
| !! | TGTATAAATAGAACTATGTT+AGG | + | chr7_3:56551722-56551741 | None:intergenic | 20.0% |
| !! | TTTCTAATTCACAAAAGATA+AGG | + | chr7_3:56551794-56551813 | None:intergenic | 20.0% |
| !! | AAAGACAATCTCTAAATTAT+TGG | - | chr7_3:56551964-56551983 | Msa1111030:intron | 20.0% |
| !! | TATAAATGATCAATAGGTTA+GGG | + | chr7_3:56552119-56552138 | None:intergenic | 20.0% |
| !! | ATATAAATGATCAATAGGTT+AGG | + | chr7_3:56552120-56552139 | None:intergenic | 20.0% |
| !! | TAACCTATTGATCATTTATA+TGG | - | chr7_3:56552119-56552138 | Msa1111030:intron | 20.0% |
| !! | ATACCATATAAATGATCAAT+AGG | + | chr7_3:56552125-56552144 | None:intergenic | 20.0% |
| !! | ATAATTGTATTTAGACTACT+AGG | + | chr7_3:56552165-56552184 | None:intergenic | 20.0% |
| ! | AATATTCTTTGGTAGAAGAA+TGG | - | chr7_3:56550309-56550328 | Msa1111030:intron | 25.0% |
| ! | TCTAAAGAAAATTACCAGTT+AGG | + | chr7_3:56550403-56550422 | None:intergenic | 25.0% |
| ! | AGAAGAAAGATCATATTCAT+AGG | - | chr7_3:56550486-56550505 | Msa1111030:intron | 25.0% |
| ! | GAAGAAAGATCATATTCATA+GGG | - | chr7_3:56550487-56550506 | Msa1111030:intron | 25.0% |
| ! | AAGTTATAATTGTAGATTCC+TGG | - | chr7_3:56550825-56550844 | Msa1111030:intron | 25.0% |
| ! | AGTTATAATTGTAGATTCCT+GGG | - | chr7_3:56550826-56550845 | Msa1111030:intron | 25.0% |
| !! | AAAAGTTTTCCCAAAGAAAA+TGG | - | chr7_3:56550934-56550953 | Msa1111030:intron | 25.0% |
| !! | AAGATAGGAATTTTATTCCA+AGG | + | chr7_3:56551079-56551098 | None:intergenic | 25.0% |
| ! | ATTCCTATCTTTATATTCCA+AGG | - | chr7_3:56551088-56551107 | Msa1111030:intron | 25.0% |
| ! | ATTCCTTGGAATATAAAGAT+AGG | + | chr7_3:56551094-56551113 | None:intergenic | 25.0% |
| ! | AGTGTAACAAATTTATTCCT+AGG | + | chr7_3:56551123-56551142 | None:intergenic | 25.0% |
| ! | TGTAAGTCACACAAAAAAAA+AGG | - | chr7_3:56551344-56551363 | Msa1111030:intron | 25.0% |
| ! | GTAAGTCACACAAAAAAAAA+GGG | - | chr7_3:56551345-56551364 | Msa1111030:intron | 25.0% |
| ! | GAAATGTTAATAGTACCTTT+AGG | - | chr7_3:56551367-56551386 | Msa1111030:intron | 25.0% |
| ! | AATTTGTACATTCAAAGCAT+TGG | - | chr7_3:56551428-56551447 | Msa1111030:intron | 25.0% |
| ! | ATTTCACTTCATTAAAGAGT+GGG | + | chr7_3:56551608-56551627 | None:intergenic | 25.0% |
| !!! | TGCTTTTGATACTTTAAAGA+TGG | - | chr7_3:56551633-56551652 | Msa1111030:intron | 25.0% |
| ! | ACAAAAGATAAGGTAACAAA+CGG | + | chr7_3:56551784-56551803 | None:intergenic | 25.0% |
| !! | ACAAATGACCTTTAATTTCA+TGG | - | chr7_3:56552012-56552031 | Msa1111030:intron | 25.0% |
| ! | TGTATTAGCCATGAAATTAA+AGG | + | chr7_3:56552023-56552042 | None:intergenic | 25.0% |
| ! | CTAATACATTACACAACAAT+GGG | - | chr7_3:56552035-56552054 | Msa1111030:intron | 25.0% |
| ! | TAATACATTACACAACAATG+GGG | - | chr7_3:56552036-56552055 | Msa1111030:intron | 25.0% |
| !! | ATTAGTGTTTAGGATAATGT+TGG | + | chr7_3:56552074-56552093 | None:intergenic | 25.0% |
| ! | CTTGATCAATATTAGTGTTT+AGG | + | chr7_3:56552084-56552103 | None:intergenic | 25.0% |
| ! | ACTTAATTAATTACAGGTTG+TGG | - | chr7_3:56552187-56552206 | Msa1111030:intron | 25.0% |
| !!! | TAGTATGATGGATTTTCAAA+AGG | + | chr7_3:56552419-56552438 | None:intergenic | 25.0% |
| GGCAGAAAAAATGAAAACTA+AGG | + | chr7_3:56550003-56550022 | None:intergenic | 30.0% | |
| !! | TAACTTGGTGCTTTAAAAAC+TGG | - | chr7_3:56550042-56550061 | Msa1111030:intron | 30.0% |
| AATGTATATTCTCAAGGTGT+TGG | - | chr7_3:56550183-56550202 | Msa1111030:intron | 30.0% | |
| CCACTAAAAGGAAACTAATA+AGG | + | chr7_3:56550222-56550241 | None:intergenic | 30.0% | |
| !! | CCTTATTAGTTTCCTTTTAG+TGG | - | chr7_3:56550219-56550238 | Msa1111030:intron | 30.0% |
| !!! | TGTGTACTTTTCTAAAGTAG+TGG | - | chr7_3:56550605-56550624 | Msa1111030:intron | 30.0% |
| TTGTATTGAGTATGTTCTGT+TGG | - | chr7_3:56550697-56550716 | Msa1111030:intron | 30.0% | |
| TGTATTGAGTATGTTCTGTT+GGG | - | chr7_3:56550698-56550717 | Msa1111030:intron | 30.0% | |
| ! | TTATTCCCACCATTTTCTTT+GGG | + | chr7_3:56550946-56550965 | None:intergenic | 30.0% |
| ! | TTTATTCCCACCATTTTCTT+TGG | + | chr7_3:56550947-56550966 | None:intergenic | 30.0% |
| AATAAAGTTTCCATGGAGAT+GGG | - | chr7_3:56550961-56550980 | Msa1111030:intron | 30.0% | |
| ! | TAATTTTATTCCCATCTCCA+TGG | + | chr7_3:56550974-56550993 | None:intergenic | 30.0% |
| !!! | TTCCTATTTTTAAGGTTCCT+TGG | - | chr7_3:56551014-56551033 | Msa1111030:intron | 30.0% |
| TTCCAAGGAACCTTAAAAAT+AGG | + | chr7_3:56551019-56551038 | None:intergenic | 30.0% | |
| ATGTTTGATCGTGCATTTAA+TGG | + | chr7_3:56551199-56551218 | None:intergenic | 30.0% | |
| CATCATATTCCAATATTGTG+TGG | + | chr7_3:56551539-56551558 | None:intergenic | 30.0% | |
| ! | AATATTGGAATATGATGACG+AGG | - | chr7_3:56551542-56551561 | Msa1111030:intron | 30.0% |
| ! | ATATTGGAATATGATGACGA+GGG | - | chr7_3:56551543-56551562 | Msa1111030:intron | 30.0% |
| GATTTCACTTCATTAAAGAG+TGG | + | chr7_3:56551609-56551628 | None:intergenic | 30.0% | |
| CAAAAGATAAGGTAACAAAC+GGG | + | chr7_3:56551783-56551802 | None:intergenic | 30.0% | |
| GCTAATACATTACACAACAA+TGG | - | chr7_3:56552034-56552053 | Msa1111030:intron | 30.0% | |
| TGCGATTCAATATTGAAAGA+CGG | + | chr7_3:56552244-56552263 | None:intergenic | 30.0% | |
| TGATGATAGGAATAGTATGA+TGG | + | chr7_3:56552431-56552450 | None:intergenic | 30.0% | |
| TGACCTGATGACTCAAAATA+TGG | + | chr7_3:56549746-56549765 | None:intergenic | 35.0% | |
| !! | TATTTTGAGTCATCAGGTCA+AGG | - | chr7_3:56549746-56549765 | Msa1111030:CDS | 35.0% |
| ! | TCATTTTGCTGCAGTTCATA+AGG | - | chr7_3:56549775-56549794 | Msa1111030:CDS | 35.0% |
| ! | TCTTTTTGCTCTTCAACAAC+AGG | - | chr7_3:56549928-56549947 | Msa1111030:intron | 35.0% |
| GCAGCTAATGTATATTCTCA+AGG | - | chr7_3:56550177-56550196 | Msa1111030:intron | 35.0% | |
| ! | AAGGTATAAGAGTATGAGAG+CGG | - | chr7_3:56550460-56550479 | Msa1111030:intron | 35.0% |
| !! | AGCTCTGGTTAGGTTTTATA+TGG | - | chr7_3:56550736-56550755 | Msa1111030:intron | 35.0% |
| ! | AGTTTTCCCAAAGAAAATGG+TGG | - | chr7_3:56550937-56550956 | Msa1111030:intron | 35.0% |
| ! | GTTTTCCCAAAGAAAATGGT+GGG | - | chr7_3:56550938-56550957 | Msa1111030:intron | 35.0% |
| GAATAAAGTTTCCATGGAGA+TGG | - | chr7_3:56550960-56550979 | Msa1111030:intron | 35.0% | |
| TTCCAAGGAATGTTATTCCT+AGG | - | chr7_3:56551103-56551122 | Msa1111030:intron | 35.0% | |
| TTCCTAGGAATAACATTCCT+TGG | + | chr7_3:56551108-56551127 | None:intergenic | 35.0% | |
| AGTTTCATGGTAAGTCTAGT+GGG | + | chr7_3:56551242-56551261 | None:intergenic | 35.0% | |
| AAGTTTCATGGTAAGTCTAG+TGG | + | chr7_3:56551243-56551262 | None:intergenic | 35.0% | |
| ATGTGAGGAACTAAGTTTCA+TGG | + | chr7_3:56551255-56551274 | None:intergenic | 35.0% | |
| TCATGTCAACCACACAATAT+TGG | - | chr7_3:56551527-56551546 | Msa1111030:intron | 35.0% | |
| AAGTGTCACAACATAGTGTT+AGG | - | chr7_3:56551756-56551775 | Msa1111030:intron | 35.0% | |
| GCGATTCAATATTGAAAGAC+GGG | + | chr7_3:56552243-56552262 | None:intergenic | 35.0% | |
| TGATGACAAATGATGAAGTG+AGG | + | chr7_3:56552330-56552349 | None:intergenic | 35.0% | |
| GGATGATATTGAAGTTGAAG+AGG | + | chr7_3:56552392-56552411 | None:intergenic | 35.0% | |
| !! | GATGGATTTTCAAAAGGTGT+TGG | + | chr7_3:56552413-56552432 | None:intergenic | 35.0% |
| !! | GTCATGAAGTTGTTGATGAT+AGG | + | chr7_3:56552444-56552463 | None:intergenic | 35.0% |
| AAAATTCTCTAGGCAAAGCT+TGG | + | chr7_3:56552475-56552494 | None:intergenic | 35.0% | |
| AAAAACTTGCAAGCACCACA+AGG | + | chr7_3:56549686-56549705 | None:intergenic | 40.0% | |
| ! | TTGAGGAGAAAGTGTGTGAA+AGG | - | chr7_3:56549704-56549723 | Msa1111030:CDS | 40.0% |
| !! | GCACCATATTTTGAGTCATC+AGG | - | chr7_3:56549740-56549759 | Msa1111030:CDS | 40.0% |
| TGTTGTTACTCTCTGCTATG+AGG | - | chr7_3:56549862-56549881 | Msa1111030:CDS | 40.0% | |
| TGAGCAACACAACCATAAAC+AGG | + | chr7_3:56549908-56549927 | None:intergenic | 40.0% | |
| AAAACTGGTAACCACTAACC+TGG | - | chr7_3:56550057-56550076 | Msa1111030:intron | 40.0% | |
| !! | TTATGAACTTGTTACCCTCC+AGG | + | chr7_3:56550078-56550097 | None:intergenic | 40.0% |
| GGACAAAAGAGACCACTAAA+AGG | + | chr7_3:56550234-56550253 | None:intergenic | 40.0% | |
| ! | AGGTATAAGAGTATGAGAGC+GGG | - | chr7_3:56550461-56550480 | Msa1111030:intron | 40.0% |
| TTTGACACATTTGTCAGCTC+TGG | - | chr7_3:56550721-56550740 | Msa1111030:intron | 40.0% | |
| TGGAACGAATGCATACACTA+AGG | - | chr7_3:56550756-56550775 | Msa1111030:intron | 40.0% | |
| ACATAACACTACCGTGAAAG+GGG | + | chr7_3:56550786-56550805 | None:intergenic | 40.0% | |
| CACATAACACTACCGTGAAA+GGG | + | chr7_3:56550787-56550806 | None:intergenic | 40.0% | |
| ! | TCCCAGGAACATTTTATACC+CGG | + | chr7_3:56550910-56550929 | None:intergenic | 40.0% |
| ! | GGGAAAACTTTTCTATTCCC+AGG | + | chr7_3:56550926-56550945 | None:intergenic | 40.0% |
| TGGTGGGAATAAAGTTTCCA+TGG | - | chr7_3:56550954-56550973 | Msa1111030:intron | 40.0% | |
| !! | CCTTTGAGATCACAAGACAT+GGG | + | chr7_3:56551159-56551178 | None:intergenic | 40.0% |
| GTTTCATGGTAAGTCTAGTG+GGG | + | chr7_3:56551241-56551260 | None:intergenic | 40.0% | |
| GTGATCATCACATGAATGTG+AGG | + | chr7_3:56551270-56551289 | None:intergenic | 40.0% | |
| !! | TACCTTTAGGGCACTCTTTA+AGG | - | chr7_3:56551380-56551399 | Msa1111030:intron | 40.0% |
| !! | ATCCTTAAAGAGTGCCCTAA+AGG | + | chr7_3:56551385-56551404 | None:intergenic | 40.0% |
| TAAAGAGTGGGTGATAGAGT+GGG | + | chr7_3:56551596-56551615 | None:intergenic | 40.0% | |
| TTAAAGAGTGGGTGATAGAG+TGG | + | chr7_3:56551597-56551616 | None:intergenic | 40.0% | |
| !! | CTTTGAGGCTGTTGAAATTG+AGG | + | chr7_3:56552278-56552297 | None:intergenic | 40.0% |
| TGAGGATGAATGCAAAGTTG+GGG | + | chr7_3:56552312-56552331 | None:intergenic | 40.0% | |
| GTGAGGATGAATGCAAAGTT+GGG | + | chr7_3:56552313-56552332 | None:intergenic | 40.0% | |
| AGTGAGGATGAATGCAAAGT+TGG | + | chr7_3:56552314-56552333 | None:intergenic | 40.0% | |
| TCTTACATGTCCATGCACTT+TGG | - | chr7_3:56552362-56552381 | Msa1111030:CDS | 40.0% | |
| TCATCAACAACTTCATGACC+AGG | - | chr7_3:56552445-56552464 | Msa1111030:CDS | 40.0% | |
| ! | GTGGTGCTTGCAAGTTTTTG+AGG | - | chr7_3:56549687-56549706 | Msa1111030:CDS | 45.0% |
| ! | GCTGCAGTTCATAAGGTGTT+TGG | - | chr7_3:56549782-56549801 | Msa1111030:CDS | 45.0% |
| GCATCAAGACGCTTATGAAC+TGG | + | chr7_3:56549842-56549861 | None:intergenic | 45.0% | |
| AGGGCTACTGATCCTGTTTA+TGG | - | chr7_3:56549893-56549912 | Msa1111030:CDS | 45.0% | |
| ! | GGTATAAGAGTATGAGAGCG+GGG | - | chr7_3:56550462-56550481 | Msa1111030:intron | 45.0% |
| ! | CACATTTGTCAGCTCTGGTT+AGG | - | chr7_3:56550726-56550745 | Msa1111030:intron | 45.0% |
| GCACATAACACTACCGTGAA+AGG | + | chr7_3:56550788-56550807 | None:intergenic | 45.0% | |
| TCACGGTAGTGTTATGTGCA+TGG | - | chr7_3:56550789-56550808 | Msa1111030:intron | 45.0% | |
| CACGGTAGTGTTATGTGCAT+GGG | - | chr7_3:56550790-56550809 | Msa1111030:intron | 45.0% | |
| TCCCGGGTATAAAATGTTCC+TGG | - | chr7_3:56550905-56550924 | Msa1111030:intron | 45.0% | |
| ! | CCCAGGAACATTTTATACCC+GGG | + | chr7_3:56550909-56550928 | None:intergenic | 45.0% |
| CCCGGGTATAAAATGTTCCT+GGG | - | chr7_3:56550906-56550925 | Msa1111030:intron | 45.0% | |
| CCCATGTCTTGTGATCTCAA+AGG | - | chr7_3:56551156-56551175 | Msa1111030:intron | 45.0% | |
| !! | GCCTTTGAGATCACAAGACA+TGG | + | chr7_3:56551160-56551179 | None:intergenic | 45.0% |
| TGGGTGATAGAGTGGGATAT+TGG | + | chr7_3:56551589-56551608 | None:intergenic | 45.0% | |
| ! | TGAAAGACGGGCTTGTACAT+AGG | + | chr7_3:56552231-56552250 | None:intergenic | 45.0% |
| AAGAGGATGACCAAAGTGCA+TGG | + | chr7_3:56552375-56552394 | None:intergenic | 45.0% | |
| TAGGCAAAGCTTGGAATTCC+TGG | + | chr7_3:56552466-56552485 | None:intergenic | 45.0% | |
| ! | GATTTGGGATGTGGGGATGA+CGG | - | chr7_3:56549653-56549672 | Msa1111030:CDS | 50.0% |
| TCTGCTATGAGGCTCTTGCT+AGG | - | chr7_3:56549873-56549892 | Msa1111030:CDS | 50.0% | |
| CTGCTATGAGGCTCTTGCTA+GGG | - | chr7_3:56549874-56549893 | Msa1111030:CDS | 50.0% | |
| ACTGGTAACCACTAACCTGG+AGG | - | chr7_3:56550060-56550079 | Msa1111030:intron | 50.0% | |
| CTGGTAACCACTAACCTGGA+GGG | - | chr7_3:56550061-56550080 | Msa1111030:intron | 50.0% | |
| CTTGTTACCCTCCAGGTTAG+TGG | + | chr7_3:56550071-56550090 | None:intergenic | 50.0% | |
| ACTAAGGCATGCCCCTTTCA+CGG | - | chr7_3:56550772-56550791 | Msa1111030:intron | 50.0% | |
| GTCTAGTGGGGTAAGTCTAG+TGG | + | chr7_3:56551229-56551248 | None:intergenic | 50.0% | |
| GGGGATGTTGAAGAGCTTTG+AGG | + | chr7_3:56552293-56552312 | None:intergenic | 50.0% | |
| ! | TTGGGATGTGGGGATGACGG+TGG | - | chr7_3:56549656-56549675 | Msa1111030:CDS | 60.0% |
| ! | GATGTGGGGATGACGGTGGT+GGG | - | chr7_3:56549660-56549679 | Msa1111030:CDS | 60.0% |
| ! | GGATGTGGGGATGACGGTGG+TGG | - | chr7_3:56549659-56549678 | Msa1111030:CDS | 65.0% |
| !! | GATGACGGTGGTGGGCCTTG+TGG | - | chr7_3:56549668-56549687 | Msa1111030:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 56549650 | 56552496 | 56549650 | ID=Msa1111030;Name=Msa1111030 |
| chr7_3 | mRNA | 56549650 | 56552496 | 56549650 | ID=Msa1111030-mRNA-1;Parent=Msa1111030;Name=Msa1111030-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|197 |
| chr7_3 | exon | 56552197 | 56552496 | 56552197 | ID=Msa1111030-mRNA-1:exon:11940;Parent=Msa1111030-mRNA-1 |
| chr7_3 | exon | 56549650 | 56549943 | 56549650 | ID=Msa1111030-mRNA-1:exon:11939;Parent=Msa1111030-mRNA-1 |
| chr7_3 | CDS | 56552197 | 56552496 | 56552197 | ID=Msa1111030-mRNA-1:cds;Parent=Msa1111030-mRNA-1 |
| chr7_3 | CDS | 56549650 | 56549943 | 56549650 | ID=Msa1111030-mRNA-1:cds;Parent=Msa1111030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
