AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1112950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112950 MtrunA17_Chr7g0248691 95.427 328 15 0 1 328 1 328 0.0 568
Msa1112950 MtrunA17_Chr8g0348311 53.392 339 125 6 1 312 1 333 5.04e-90 272
Msa1112950 MtrunA17_Chr2g0293481 49.000 200 72 6 135 306 238 435 9.23e-49 170
Msa1112950 MtrunA17_Chr1g0202461 66.667 111 35 2 132 240 238 348 1.82e-44 156
Msa1112950 MtrunA17_Chr8g0387501 41.048 229 93 7 4 226 9 201 4.41e-40 142
Msa1112950 MtrunA17_Chr2g0284321 60.440 91 30 1 134 218 9 99 1.00e-33 123
Msa1112950 MtrunA17_Chr7g0270051 50.360 139 49 5 134 261 24 153 2.32e-33 124
Msa1112950 MtrunA17_Chr8g0379461 49.587 121 40 2 135 243 45 156 3.50e-32 120
Msa1112950 MtrunA17_Chr2g0319961 58.947 95 28 1 135 218 50 144 1.45e-31 119
Msa1112950 MtrunA17_Chr1g0147881 62.195 82 26 2 135 211 238 319 4.48e-29 114
Msa1112950 MtrunA17_Chr4g0071521 49.593 123 41 3 102 211 188 302 6.90e-29 113
Msa1112950 MtrunA17_Chr5g0401821 60.241 83 28 1 134 211 174 256 1.69e-27 108
Msa1112950 MtrunA17_Chr4g0053281 60.976 82 27 2 135 211 242 323 1.36e-26 107
Msa1112950 MtrunA17_Chr2g0289181 51.136 88 42 1 141 227 1 88 5.24e-25 100
Msa1112950 MtrunA17_Chr1g0184691 57.500 80 29 1 137 211 271 350 2.61e-24 101
Msa1112950 MtrunA17_Chr3g0139021 43.478 115 53 4 117 219 266 380 3.87e-23 99.0
Msa1112950 MtrunA17_Chr7g0228941 49.367 79 35 1 138 211 31 109 2.05e-22 90.9
Msa1112950 MtrunA17_Chr4g0051881 56.522 69 26 2 155 223 179 243 5.72e-19 86.3
Msa1112950 MtrunA17_Chr7g0270831 52.055 73 35 0 152 224 214 286 2.94e-18 85.1
Msa1112950 MtrunA17_Chr7g0218081 43.564 101 55 2 132 231 387 486 3.50e-18 85.1
Msa1112950 MtrunA17_Chr7g0218081 29.078 141 82 4 85 214 153 286 4.90e-11 63.5
Msa1112950 MtrunA17_Chr7g0270191 48.148 81 39 2 155 235 146 223 3.57e-18 83.6
Msa1112950 MtrunA17_Chr5g0418191 42.342 111 60 3 110 217 273 382 3.69e-18 84.7
Msa1112950 MtrunA17_Chr5g0418191 32.653 147 71 5 87 214 72 209 6.54e-11 63.2
Msa1112950 MtrunA17_Chr1g0194481 41.176 102 49 4 130 222 127 226 4.31e-18 83.6
Msa1112950 MtrunA17_Chr7g0263531 45.918 98 36 3 133 214 324 420 1.35e-17 83.2
Msa1112950 MtrunA17_Chr7g0263531 45.833 72 37 2 153 224 188 257 7.28e-13 68.9
Msa1112950 MtrunA17_Chr2g0288871 54.688 64 29 0 151 214 302 365 1.89e-17 83.2
Msa1112950 MtrunA17_Chr5g0443131 55.000 60 26 1 155 214 158 216 2.06e-17 81.3
Msa1112950 MtrunA17_Chr3g0126391 31.720 186 108 5 155 328 134 312 4.13e-17 80.9
Msa1112950 MtrunA17_Chr4g0042831 46.154 91 46 3 129 217 251 340 7.58e-17 80.5
Msa1112950 MtrunA17_Chr4g0042831 41.333 75 43 1 140 214 131 204 5.06e-12 66.2
Msa1112950 MtrunA17_Chr3g0101131 42.157 102 45 3 131 219 379 479 1.01e-16 80.9
Msa1112950 MtrunA17_Chr4g0025051 48.000 75 39 0 150 224 331 405 1.58e-16 80.5
Msa1112950 MtrunA17_Chr7g0216891 28.866 194 115 4 49 224 101 289 3.97e-16 79.3
Msa1112950 MtrunA17_Chr4g0051181 56.140 57 25 0 159 215 248 304 7.18e-16 78.2
Msa1112950 MtrunA17_Chr4g0025061 45.333 75 41 0 150 224 356 430 7.41e-16 78.2
Msa1112950 MtrunA17_Chr5g0445311 38.095 105 48 2 131 219 325 428 8.35e-16 78.2
Msa1112950 MtrunA17_Chr3g0099641 44.595 74 41 0 151 224 248 321 8.51e-16 77.8
Msa1112950 MtrunA17_Chr5g0418781 56.140 57 24 1 155 211 125 180 1.78e-15 75.5
Msa1112950 MtrunA17_Chr4g0075201 50.794 63 31 0 152 214 265 327 1.98e-15 77.0
Msa1112950 MtrunA17_Chr7g0238921 36.000 150 82 5 152 300 122 258 2.22e-15 75.9
Msa1112950 MtrunA17_Chr4g0001361 43.243 74 42 0 152 225 160 233 2.30e-15 75.5
Msa1112950 MtrunA17_Chr7g0275531 42.000 100 45 3 131 217 88 187 2.90e-15 75.5
Msa1112950 MtrunA17_Chr8g0387981 42.353 85 41 2 133 209 105 189 3.47e-15 75.5
Msa1112950 MtrunA17_Chr2g0302391 50.000 70 35 0 155 224 212 281 4.72e-15 75.5
Msa1112950 MtrunA17_Chr2g0322391 42.683 82 35 1 133 214 340 409 5.28e-15 75.9
Msa1112950 MtrunA17_Chr2g0333851 43.077 65 37 0 152 216 167 231 8.42e-15 73.9
Msa1112950 MtrunA17_Chr2g0294231 48.333 60 30 1 155 214 204 262 1.22e-14 73.9
Msa1112950 MtrunA17_Chr7g0249311 35.345 116 67 4 105 219 348 456 2.03e-14 73.9
Msa1112950 MtrunA17_Chr7g0249311 48.387 62 30 2 153 214 178 237 3.34e-11 64.3
Msa1112950 MtrunA17_Chr3g0079691 49.231 65 32 1 155 219 496 559 3.11e-14 73.6
Msa1112950 MtrunA17_Chr3g0079691 50.000 62 29 2 153 214 279 338 6.23e-12 66.6
Msa1112950 MtrunA17_Chr6g0485431 48.148 81 37 4 142 218 141 220 3.82e-14 72.4
Msa1112950 MtrunA17_Chr8g0347251 28.358 201 122 5 114 303 96 285 4.39e-14 72.0
Msa1112950 MtrunA17_Chr3g0129321 46.032 63 33 1 152 214 116 177 4.94e-14 70.1
Msa1112950 MtrunA17_Chr4g0060271 41.975 81 44 1 134 214 238 315 5.25e-14 72.8
Msa1112950 MtrunA17_Chr4g0074001 48.485 66 33 1 152 217 357 421 6.15e-14 72.4
Msa1112950 MtrunA17_Chr8g0383251 47.619 63 32 1 152 214 106 167 7.55e-14 68.9
Msa1112950 MtrunA17_Chr5g0447701 43.373 83 44 2 152 234 250 329 7.68e-14 71.6
Msa1112950 MtrunA17_Chr4g0004911 51.667 60 28 1 155 214 337 395 9.45e-14 71.6
Msa1112950 MtrunA17_Chr4g0004911 45.000 60 32 1 155 214 185 243 6.97e-11 63.2
Msa1112950 MtrunA17_Chr1g0150801 49.180 61 30 1 152 212 100 159 9.80e-14 68.2
Msa1112950 MtrunA17_Chr7g0243891 34.437 151 70 6 109 231 310 459 1.09e-13 71.6
Msa1112950 MtrunA17_Chr1g0150281 47.368 57 30 0 155 211 141 197 1.10e-13 70.5
Msa1112950 MtrunA17_Chr7g0249301 49.180 61 30 1 155 215 293 352 1.67e-13 70.5
Msa1112950 MtrunA17_Chr7g0249301 49.180 61 29 2 155 215 63 121 4.29e-12 66.2
Msa1112950 MtrunA17_Chr4g0068541 44.262 61 33 1 155 215 209 268 1.76e-13 70.9
Msa1112950 MtrunA17_Chr3g0136961 40.789 76 38 1 143 211 120 195 6.55e-13 68.2
Msa1112950 MtrunA17_Chr4g0024391 42.667 75 43 0 150 224 225 299 6.93e-13 69.3
Msa1112950 MtrunA17_Chr3g0106491 43.590 78 42 2 152 229 363 438 1.10e-12 68.6
Msa1112950 MtrunA17_Chr3g0106491 31.250 160 99 5 64 215 101 257 7.58e-11 63.2
Msa1112950 MtrunA17_Chr7g0224801 43.548 62 34 1 152 213 91 151 1.50e-12 65.1
Msa1112950 MtrunA17_Chr1g0189391 50.794 63 29 2 150 211 93 154 1.82e-12 67.4
Msa1112950 MtrunA17_Chr5g0432161 45.588 68 36 1 152 219 419 485 2.10e-12 67.8
Msa1112950 MtrunA17_Chr8g0383351 44.118 68 31 2 150 211 150 216 3.08e-12 65.5
Msa1112950 MtrunA17_Chr3g0129361 46.053 76 37 3 155 230 145 216 3.77e-12 65.1
Msa1112950 MtrunA17_Chr8g0335811 41.573 89 47 3 126 211 124 210 4.53e-12 64.7
Msa1112950 MtrunA17_Chr1g0150271 40.625 64 38 0 152 215 99 162 1.43e-11 63.9
Msa1112950 MtrunA17_Chr1g0188941 45.902 61 32 1 155 215 52 111 5.36e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112950 AT4G01250.1 46.974 347 112 13 1 325 1 297 1.01e-79 245
Msa1112950 AT4G23550.1 42.126 254 115 6 3 249 8 236 1.84e-41 147
Msa1112950 AT2G34830.1 68.367 98 21 1 135 222 186 283 3.87e-41 149
Msa1112950 AT2G34830.2 68.367 98 21 1 135 222 195 292 5.20e-41 148
Msa1112950 AT1G30650.1 62.617 107 27 2 129 222 179 285 1.22e-39 145
Msa1112950 AT5G45050.2 59.813 107 42 1 117 222 1114 1220 7.33e-37 141
Msa1112950 AT5G45050.1 59.813 107 42 1 117 222 1142 1248 7.94e-37 140
Msa1112950 AT5G45050.4 59.813 107 42 1 117 222 1003 1109 8.93e-37 140
Msa1112950 AT3G58710.2 51.695 118 38 2 129 227 34 151 4.29e-35 129
Msa1112950 AT1G29280.1 58.252 103 27 2 135 226 44 141 8.24e-34 125
Msa1112950 AT3G58710.1 53.571 112 33 2 135 227 41 152 1.19e-33 125
Msa1112950 AT2G30590.1 58.333 84 30 1 134 212 288 371 2.01e-27 110
Msa1112950 AT4G24240.1 59.036 83 29 1 134 211 256 338 1.28e-26 108
Msa1112950 AT4G31550.2 44.628 121 56 2 102 211 182 302 1.90e-26 107
Msa1112950 AT4G31550.1 56.098 82 31 1 135 211 222 303 7.58e-26 105
Msa1112950 AT2G24570.1 56.098 82 31 1 135 211 219 300 4.80e-25 103
Msa1112950 AT2G23320.1 55.422 83 32 2 134 211 215 297 5.24e-25 103
Msa1112950 AT5G45260.1 50.000 98 44 3 132 225 1185 1281 1.71e-24 104
Msa1112950 AT3G04670.1 55.422 83 32 1 134 211 237 319 1.37e-23 99.4
Msa1112950 AT5G28650.1 55.422 83 32 1 134 211 237 319 1.42e-23 99.4
Msa1112950 AT5G46350.1 52.778 72 31 2 155 224 184 254 2.63e-19 87.4
Msa1112950 AT4G18170.1 48.780 82 40 2 135 216 154 233 7.10e-19 86.3
Msa1112950 AT2G37260.2 53.846 91 35 4 127 211 234 323 1.42e-18 85.5
Msa1112950 AT2G37260.3 53.846 91 35 4 127 211 236 325 1.52e-18 85.5
Msa1112950 AT2G37260.1 53.846 91 35 4 127 211 316 405 2.24e-18 85.9
Msa1112950 AT4G04450.2 50.685 73 36 0 152 224 196 268 8.50e-18 84.0
Msa1112950 AT1G29860.1 55.738 61 26 1 155 215 137 196 8.64e-18 82.4
Msa1112950 AT2G04880.1 37.500 128 68 4 119 240 271 392 1.18e-17 84.0
Msa1112950 AT4G04450.1 50.685 73 36 0 152 224 290 362 1.25e-17 84.0
Msa1112950 AT2G04880.2 37.500 128 68 4 119 240 247 368 1.39e-17 83.6
Msa1112950 AT1G62300.1 53.968 63 29 0 152 214 310 372 9.50e-17 81.3
Msa1112950 AT4G22070.4 53.125 64 30 0 151 214 294 357 9.74e-17 81.3
Msa1112950 AT4G22070.3 53.125 64 30 0 151 214 294 357 9.74e-17 81.3
Msa1112950 AT4G22070.2 53.125 64 30 0 151 214 294 357 9.74e-17 81.3
Msa1112950 AT4G22070.1 53.125 64 30 0 151 214 294 357 9.74e-17 81.3
Msa1112950 AT1G13960.2 53.968 63 28 1 152 214 254 315 1.22e-16 80.1
Msa1112950 AT1G13960.2 43.939 66 35 2 149 214 71 134 4.94e-11 63.5
Msa1112950 AT1G68150.1 46.053 76 41 0 154 229 235 310 1.37e-16 80.1
Msa1112950 AT1G13960.1 53.968 63 28 1 152 214 407 468 1.63e-16 80.5
Msa1112950 AT1G13960.1 43.939 66 35 2 149 214 224 287 5.16e-11 63.9
Msa1112950 AT5G49520.1 53.333 60 27 1 155 214 222 280 2.96e-16 79.3
Msa1112950 AT3G62340.1 46.988 83 38 2 137 214 96 177 4.27e-16 77.4
Msa1112950 AT2G03340.1 50.000 68 33 1 152 219 413 479 4.58e-16 79.3
Msa1112950 AT5G26170.1 53.968 63 27 2 149 211 109 169 5.46e-16 75.1
Msa1112950 AT4G01720.1 54.098 61 28 0 154 214 239 299 1.67e-15 77.4
Msa1112950 AT5G15130.1 41.111 90 50 1 135 224 211 297 1.80e-15 77.4
Msa1112950 AT2G21900.1 49.180 61 30 1 155 215 110 169 2.12e-15 74.3
Msa1112950 AT5G15130.2 41.111 90 50 1 135 224 169 255 2.17e-15 77.0
Msa1112950 AT2G25000.2 48.333 60 31 0 155 214 104 163 3.05e-15 74.3
Msa1112950 AT2G25000.4 48.333 60 31 0 155 214 104 163 3.05e-15 74.3
Msa1112950 AT1G18860.1 43.750 80 42 1 135 214 223 299 3.36e-15 76.6
Msa1112950 AT4G26640.5 46.835 79 36 2 146 219 192 269 4.41e-15 75.9
Msa1112950 AT4G26640.6 46.835 79 36 2 146 219 192 269 4.41e-15 75.9
Msa1112950 AT4G26640.4 46.835 79 36 2 146 219 192 269 4.41e-15 75.9
Msa1112950 AT4G26640.3 46.835 79 36 2 146 219 192 269 4.41e-15 75.9
Msa1112950 AT4G26640.2 42.308 104 44 4 131 219 343 445 4.86e-15 76.3
Msa1112950 AT4G26640.7 42.308 104 44 4 131 219 303 405 5.05e-15 76.3
Msa1112950 AT2G25000.3 48.333 60 31 0 155 214 126 185 5.24e-15 73.9
Msa1112950 AT4G26640.1 42.308 104 44 4 131 219 271 373 5.33e-15 75.9
Msa1112950 AT2G47260.1 35.238 105 57 3 110 214 140 233 5.60e-15 75.1
Msa1112950 AT2G25000.1 48.333 60 31 0 155 214 147 206 6.66e-15 73.9
Msa1112950 AT4G11070.2 44.792 96 41 3 131 214 80 175 9.36e-15 73.9
Msa1112950 AT4G11070.1 44.792 96 41 3 131 214 112 207 1.04e-14 73.9
Msa1112950 AT1G69310.4 50.794 63 29 2 149 211 143 203 1.13e-14 73.6
Msa1112950 AT1G69310.2 50.794 63 29 2 149 211 143 203 1.13e-14 73.6
Msa1112950 AT1G69310.1 50.794 63 29 2 149 211 143 203 1.13e-14 73.6
Msa1112950 AT1G80840.1 40.278 72 43 0 155 226 147 218 1.19e-14 73.9
Msa1112950 AT5G07100.2 50.000 64 31 1 152 215 139 201 1.26e-14 72.4
Msa1112950 AT5G07100.2 45.161 62 33 1 153 214 23 83 4.34e-11 62.4
Msa1112950 AT5G07100.4 50.000 64 31 1 152 215 139 201 1.26e-14 72.4
Msa1112950 AT5G07100.4 45.161 62 33 1 153 214 23 83 4.34e-11 62.4
Msa1112950 AT5G07100.5 50.000 64 31 1 152 215 139 201 1.26e-14 72.4
Msa1112950 AT5G07100.5 45.161 62 33 1 153 214 23 83 4.34e-11 62.4
Msa1112950 AT5G07100.3 50.000 64 31 1 152 215 139 201 1.26e-14 72.4
Msa1112950 AT5G07100.3 45.161 62 33 1 153 214 23 83 4.34e-11 62.4
Msa1112950 AT3G01080.2 50.794 63 30 1 152 214 342 403 3.25e-14 73.6
Msa1112950 AT3G01080.2 41.429 70 39 2 153 222 204 271 8.52e-11 63.2
Msa1112950 AT5G07100.1 50.000 64 31 1 152 215 232 294 3.32e-14 72.4
Msa1112950 AT5G07100.1 45.161 62 33 1 153 214 116 176 7.81e-11 62.8
Msa1112950 AT3G01080.1 50.794 63 30 1 152 214 304 365 3.47e-14 73.2
Msa1112950 AT3G01080.1 41.429 70 39 2 153 222 166 233 9.76e-11 62.8
Msa1112950 AT4G30935.1 46.970 66 34 1 152 217 329 393 5.01e-14 73.2
Msa1112950 AT1G69810.1 45.833 72 38 1 154 224 203 274 6.27e-14 72.4
Msa1112950 AT2G38470.1 46.479 71 37 1 155 225 363 432 8.06e-14 72.4
Msa1112950 AT1G69810.2 45.833 72 38 1 154 224 145 216 8.38e-14 71.6
Msa1112950 AT4G31800.2 45.000 60 33 0 155 214 112 171 1.02e-13 70.1
Msa1112950 AT4G31800.1 45.000 60 33 0 155 214 177 236 1.20e-13 70.9
Msa1112950 AT2G40740.1 32.222 180 92 8 64 215 62 239 1.50e-13 70.5
Msa1112950 AT2G40740.3 32.222 180 92 8 64 215 71 248 1.89e-13 70.1
Msa1112950 AT5G56270.1 49.206 63 31 1 155 217 488 549 1.93e-13 71.6
Msa1112950 AT1G64000.1 40.260 77 45 1 150 226 110 185 2.21e-13 68.2
Msa1112950 AT2G46400.1 39.316 117 62 4 101 209 46 161 3.41e-13 69.3
Msa1112950 AT4G39410.1 39.394 99 55 3 136 230 203 300 5.54e-13 68.9
Msa1112950 AT2G44745.1 42.045 88 46 3 127 211 116 201 5.74e-13 67.8
Msa1112950 AT4G23810.1 43.434 99 46 4 119 209 119 215 6.26e-13 68.9
Msa1112950 AT4G26440.1 46.154 65 34 1 155 219 373 436 6.72e-13 69.7
Msa1112950 AT4G26440.1 43.836 73 37 3 153 223 177 247 2.91e-11 64.7
Msa1112950 AT5G41570.1 40.260 77 45 1 150 226 94 169 9.52e-13 66.2
Msa1112950 AT2G30250.1 44.000 75 36 2 146 215 315 388 1.40e-12 68.6
Msa1112950 AT1G55600.1 44.262 61 33 1 154 214 307 366 1.51e-12 68.6
Msa1112950 AT5G13080.1 44.262 61 33 1 152 212 65 124 1.57e-12 64.7
Msa1112950 AT3G01970.1 35.802 81 51 1 152 232 63 142 1.79e-12 64.7
Msa1112950 AT3G56400.1 34.021 97 57 3 127 217 94 189 3.61e-12 66.6
Msa1112950 AT2G40750.1 32.609 138 74 4 149 267 146 283 4.54e-12 66.6
Msa1112950 AT2G46130.1 45.161 62 33 1 152 213 28 88 1.19e-11 61.2
Msa1112950 AT5G43290.1 45.455 77 39 2 152 228 112 185 1.46e-11 64.3
Msa1112950 AT5G64810.1 45.763 59 31 1 155 213 111 168 2.53e-11 62.4
Msa1112950 AT5G24110.1 44.444 63 33 1 149 209 108 170 5.19e-11 63.2
Msa1112950 AT3G01080.3 41.429 70 39 2 153 222 204 271 5.21e-11 63.2
Msa1112950 AT5G45050.3 52.542 59 27 1 117 174 1142 1200 6.52e-11 63.9

Find 84 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTGTGTTTGAGCTAATT+TGG 0.118717 7_3:-59098905 None:intergenic
CTGCTATTGCAATTCCTAAT+TGG 0.183200 7_3:+59099746 Msa1112950:CDS
TGAGGTTGTTGTTTCTCTTT+TGG 0.224899 7_3:-59098536 None:intergenic
TCAGCTTGAGGTGGTGTTAA+TGG 0.224988 7_3:-59099508 None:intergenic
TTTGAGAGTTTAGATGAATT+TGG 0.226929 7_3:+59099703 Msa1112950:CDS
TGTGGCTACTCTTCTATCTT+TGG 0.243238 7_3:+59098706 Msa1112950:CDS
GACGAAGAAGGAGATGAATT+TGG 0.264657 7_3:+59099649 Msa1112950:CDS
GCACTATTAGCCACCCAATT+AGG 0.288597 7_3:-59099760 None:intergenic
ATATGGGCATGGAGAAAATA+TGG 0.288611 7_3:+59099192 Msa1112950:CDS
TGCTATTGCAATTCCTAATT+GGG 0.291536 7_3:+59099747 Msa1112950:CDS
GCTGCTGCTGCTACAGCTGC+TGG 0.297450 7_3:+59099781 Msa1112950:CDS
CACAAGAAGGTTCAGGTTGC+AGG 0.297705 7_3:-59098687 None:intergenic
AGAGTCTCTCTTCAGATATA+TGG 0.305175 7_3:+59099175 Msa1112950:CDS
GTAGAGAAAACGGAACATTT+TGG 0.319898 7_3:+59099896 Msa1112950:three_prime_UTR
AATTTGATTGGATGATCATT+AGG 0.324404 7_3:+59100015 Msa1112950:three_prime_UTR
CTAATCTTGTTAAATTTGAT+TGG 0.328937 7_3:+59100003 Msa1112950:three_prime_UTR
TCTTGTGTTTGAGCTAATTT+GGG 0.330263 7_3:-59098904 None:intergenic
TCTTCACCTCCTGAGGTTGT+AGG 0.351765 7_3:-59099562 None:intergenic
GTCAGAAAGTAGAGAAGAAA+AGG 0.360877 7_3:+59099609 Msa1112950:CDS
CAAGAAAGTGACAAAATTTG+AGG 0.365124 7_3:-59098742 None:intergenic
ATTGCAATAGCAGAAGAAAA+TGG 0.365837 7_3:-59099736 None:intergenic
AGAAAAGGAAGATTCTTTGA+TGG 0.372979 7_3:+59099624 Msa1112950:CDS
GATCTCCATGCGGTGGTTAG+AGG 0.374060 7_3:+59098604 Msa1112950:CDS
CAATGGAAGTGTAGTATAGT+AGG 0.375234 7_3:+59099934 Msa1112950:three_prime_UTR
CTTTACCTATGGAAGAAGAT+TGG 0.382515 7_3:+59098581 Msa1112950:exon
ATGGAGTTTCTAGCTTCAAA+AGG 0.418901 7_3:-59098775 None:intergenic
TATAGATGTAGCAGTTCAAA+AGG 0.420572 7_3:+59099355 Msa1112950:CDS
GAGTAGCCACAAGAAGGTTC+AGG 0.422256 7_3:-59098694 None:intergenic
TTTACCTATGGAAGAAGATT+GGG 0.432908 7_3:+59098582 Msa1112950:exon
AATGGAAGTGTAGTATAGTA+GGG 0.449244 7_3:+59099935 Msa1112950:three_prime_UTR
CAATCTTCTTCCATAGGTAA+AGG 0.463504 7_3:-59098580 None:intergenic
TCTTTGTTGGTTTCAGCTTG+AGG 0.464539 7_3:-59099520 None:intergenic
AGACTTTGTCCCTTTACCTA+TGG 0.466153 7_3:+59098570 Msa1112950:exon
TGTGATGATCTTGAAAAGAA+AGG 0.468032 7_3:-59098823 None:intergenic
TATGTTACTATGAACATTGT+TGG 0.470318 7_3:-59099418 None:intergenic
GAGTCTCTCTTCAGATATAT+GGG 0.478312 7_3:+59099176 Msa1112950:CDS
AATCTTCTTCCATAGGTAAA+GGG 0.483664 7_3:-59098579 None:intergenic
AAGTTCATGCAACTCTTCAA+TGG 0.483711 7_3:-59098794 None:intergenic
AACCTCTTCTTCACCTCCTG+AGG 0.488504 7_3:-59099569 None:intergenic
CCCTCTTCTCCTACAACCTC+AGG 0.495834 7_3:+59099553 Msa1112950:CDS
TGTAGGTGTGGTGGTTGAAG+TGG 0.496240 7_3:-59098635 None:intergenic
TTATTAATACTTACATACCT+TGG 0.497438 7_3:+59100041 Msa1112950:three_prime_UTR
AGCTAATTTGGGTGAAGCAG+AGG 0.511551 7_3:-59098893 None:intergenic
GCTGCTGCTACAGCTGCTGG+TGG 0.522446 7_3:+59099784 Msa1112950:CDS
GAAGAAGAAACAGAGGATGT+AGG 0.525651 7_3:-59098652 None:intergenic
TATAGTAGGGAGGAACTAGT+AGG 0.527921 7_3:+59099948 Msa1112950:three_prime_UTR
TGGAGTTTCTAGCTTCAAAA+GGG 0.530845 7_3:-59098774 None:intergenic
ACAAGAAGGTTCAGGTTGCA+GGG 0.532171 7_3:-59098686 None:intergenic
GGAGGAATCTTTGCTGACAA+TGG 0.535261 7_3:+59099917 Msa1112950:three_prime_UTR
TTTGATAAGGTAAAGAGAGA+GGG 0.535713 7_3:-59098488 None:intergenic
TATGGGCATGGAGAAAATAT+GGG 0.537903 7_3:+59099193 Msa1112950:CDS
AGGTGTGGTGGTTGAAGTGG+TGG 0.538195 7_3:-59098632 None:intergenic
TCTGAAGAGAGACTCTCAAC+TGG 0.540075 7_3:-59099168 None:intergenic
CCTGAGGTTGTAGGAGAAGA+GGG 0.546404 7_3:-59099553 None:intergenic
GGAGAAGTTTGCAAAGAAAG+AGG 0.551853 7_3:-59098847 None:intergenic
TCTTTGATGGATGACGAAGA+AGG 0.562001 7_3:+59099637 Msa1112950:CDS
TCCTGAGGTTGTAGGAGAAG+AGG 0.567164 7_3:-59099554 None:intergenic
TTGATAAGGTAAAGAGAGAG+GGG 0.570549 7_3:-59098487 None:intergenic
CTGCAACCTGAACCTTCTTG+TGG 0.572424 7_3:+59098688 Msa1112950:CDS
AGAAACAGAGGATGTAGGTG+TGG 0.573812 7_3:-59098647 None:intergenic
AGATCCCAATCTTCTTCCAT+AGG 0.576312 7_3:-59098586 None:intergenic
AACAGAGGAAGAAGAAACAG+AGG 0.577059 7_3:-59098659 None:intergenic
TAAGAGAATGAAGAAAACAA+AGG 0.578001 7_3:-59098868 None:intergenic
GAAGAAGAGGTTCAAACTCA+AGG 0.585892 7_3:+59099580 Msa1112950:CDS
ATAGAAGAGTAGCCACAAGA+AGG 0.596283 7_3:-59098700 None:intergenic
TAAAAGGGTCACCATATCCA+AGG 0.597269 7_3:+59099226 Msa1112950:CDS
TATTGCAATTCCTAATTGGG+TGG 0.603297 7_3:+59099750 Msa1112950:CDS
TCTCTTCAGATATATGGGCA+TGG 0.605027 7_3:+59099181 Msa1112950:CDS
TTGTTGGTTTCAGCTTGAGG+TGG 0.614005 7_3:-59099517 None:intergenic
ACTCTCTTGCTGGTTCAACA+AGG 0.623552 7_3:+59099479 Msa1112950:CDS
ATAGATGTAGCAGTTCAAAA+GGG 0.629154 7_3:+59099356 Msa1112950:CDS
AACAGAGGATGTAGGTGTGG+TGG 0.629725 7_3:-59098644 None:intergenic
AAAATGACTTTACATTACCA+AGG 0.629743 7_3:-59100058 None:intergenic
CAAGAAGGTTCAGGTTGCAG+GGG 0.629954 7_3:-59098685 None:intergenic
AACCTCAGGAGGTGAAGAAG+AGG 0.630119 7_3:+59099567 Msa1112950:CDS
AAAGTCTGTAACAATGTCTG+AGG 0.636479 7_3:-59098554 None:intergenic
AGCAACCTCTAACCACCGCA+TGG 0.645537 7_3:-59098609 None:intergenic
GGTTGGTGAGAGAACCACCT+TGG 0.648538 7_3:-59098960 None:intergenic
AGTAGTAAACATTCACACCA+AGG 0.691967 7_3:+59098943 Msa1112950:CDS
GGAAGTGTAGTATAGTAGGG+AGG 0.697246 7_3:+59099938 Msa1112950:three_prime_UTR
AGATTGGGATCTCCATGCGG+TGG 0.697339 7_3:+59098597 Msa1112950:CDS
TCTTCTCCTACAACCTCAGG+AGG 0.702219 7_3:+59099556 Msa1112950:CDS
AGTAAACATTCACACCAAGG+TGG 0.743596 7_3:+59098946 Msa1112950:CDS
AGAAGATTGGGATCTCCATG+CGG 0.744459 7_3:+59098594 Msa1112950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGCTTTATTTTTTCTTTAT+AGG + chr7_3:59099115-59099134 Msa1112950:intron 15.0%
!!! AAAAAATTGAATTTTTACCT+TGG - chr7_3:59099246-59099265 None:intergenic 15.0%
!!! AATTTTGTTTTGTGATTTAT+AGG + chr7_3:59099326-59099345 Msa1112950:intron 15.0%
!!! ATTTTGTTTTGTGATTTATA+GGG + chr7_3:59099327-59099346 Msa1112950:intron 15.0%
!!! TTGCTTTATTTTTTCTTTAT+AGG + chr7_3:59099115-59099134 Msa1112950:intron 15.0%
!!! AAAAAATTGAATTTTTACCT+TGG - chr7_3:59099246-59099265 None:intergenic 15.0%
!!! AATTTTGTTTTGTGATTTAT+AGG + chr7_3:59099326-59099345 Msa1112950:intron 15.0%
!!! ATTTTGTTTTGTGATTTATA+GGG + chr7_3:59099327-59099346 Msa1112950:intron 15.0%
!!! AGACTTGATTTTTATTACAT+GGG - chr7_3:59099056-59099075 None:intergenic 20.0%
!!! AAGACTTGATTTTTATTACA+TGG - chr7_3:59099057-59099076 None:intergenic 20.0%
!!! TTTTGTTTTGTGATTTATAG+GGG + chr7_3:59099328-59099347 Msa1112950:intron 20.0%
!! CTAATCTTGTTAAATTTGAT+TGG + chr7_3:59100003-59100022 Msa1112950:three_prime_UTR 20.0%
!! TTATTAATACTTACATACCT+TGG + chr7_3:59100041-59100060 Msa1112950:three_prime_UTR 20.0%
!!! TCTTTTGTCAATTGTTATTT+TGG + chr7_3:59100095-59100114 Msa1112950:three_prime_UTR 20.0%
!!! AGACTTGATTTTTATTACAT+GGG - chr7_3:59099056-59099075 None:intergenic 20.0%
!!! AAGACTTGATTTTTATTACA+TGG - chr7_3:59099057-59099076 None:intergenic 20.0%
!!! TTTTGTTTTGTGATTTATAG+GGG + chr7_3:59099328-59099347 Msa1112950:intron 20.0%
!! CTAATCTTGTTAAATTTGAT+TGG + chr7_3:59100003-59100022 Msa1112950:three_prime_UTR 20.0%
!! TTATTAATACTTACATACCT+TGG + chr7_3:59100041-59100060 Msa1112950:three_prime_UTR 20.0%
!!! TCTTTTGTCAATTGTTATTT+TGG + chr7_3:59100095-59100114 Msa1112950:three_prime_UTR 20.0%
! TAAGAGAATGAAGAAAACAA+AGG - chr7_3:59098871-59098890 None:intergenic 25.0%
!! TTTACCTTCTTTTTGATCTT+GGG - chr7_3:59098984-59099003 None:intergenic 25.0%
!! ATTTACCTTCTTTTTGATCT+TGG - chr7_3:59098985-59099004 None:intergenic 25.0%
!! TTGAATTTTTACCTTGGATA+TGG - chr7_3:59099240-59099259 None:intergenic 25.0%
! TATGTTACTATGAACATTGT+TGG - chr7_3:59099421-59099440 None:intergenic 25.0%
! TTTGAGAGTTTAGATGAATT+TGG + chr7_3:59099703-59099722 Msa1112950:CDS 25.0%
!!! CTTTTTGTTTGTAGAGAAAA+CGG + chr7_3:59099886-59099905 Msa1112950:three_prime_UTR 25.0%
! AATTTGATTGGATGATCATT+AGG + chr7_3:59100015-59100034 Msa1112950:three_prime_UTR 25.0%
! AAAATGACTTTACATTACCA+AGG - chr7_3:59100061-59100080 None:intergenic 25.0%
! TAAGAGAATGAAGAAAACAA+AGG - chr7_3:59098871-59098890 None:intergenic 25.0%
!! TTTACCTTCTTTTTGATCTT+GGG - chr7_3:59098984-59099003 None:intergenic 25.0%
!! ATTTACCTTCTTTTTGATCT+TGG - chr7_3:59098985-59099004 None:intergenic 25.0%
!! TTGAATTTTTACCTTGGATA+TGG - chr7_3:59099240-59099259 None:intergenic 25.0%
! TATGTTACTATGAACATTGT+TGG - chr7_3:59099421-59099440 None:intergenic 25.0%
! TTTGAGAGTTTAGATGAATT+TGG + chr7_3:59099703-59099722 Msa1112950:CDS 25.0%
!!! CTTTTTGTTTGTAGAGAAAA+CGG + chr7_3:59099886-59099905 Msa1112950:three_prime_UTR 25.0%
! AATTTGATTGGATGATCATT+AGG + chr7_3:59100015-59100034 Msa1112950:three_prime_UTR 25.0%
! AAAATGACTTTACATTACCA+AGG - chr7_3:59100061-59100080 None:intergenic 25.0%
TTTGATAAGGTAAAGAGAGA+GGG - chr7_3:59098491-59098510 None:intergenic 30.0%
! TTTTGATAAGGTAAAGAGAG+AGG - chr7_3:59098492-59098511 None:intergenic 30.0%
!! TTTTGGAGAAAGACAAAAGA+AGG - chr7_3:59098522-59098541 None:intergenic 30.0%
AATCTTCTTCCATAGGTAAA+GGG - chr7_3:59098582-59098601 None:intergenic 30.0%
TTTACCTATGGAAGAAGATT+GGG + chr7_3:59098582-59098601 Msa1112950:exon 30.0%
CAAGAAAGTGACAAAATTTG+AGG - chr7_3:59098745-59098764 None:intergenic 30.0%
TGTGATGATCTTGAAAAGAA+AGG - chr7_3:59098826-59098845 None:intergenic 30.0%
TCTTGTGTTTGAGCTAATTT+GGG - chr7_3:59098907-59098926 None:intergenic 30.0%
TATGGGCAAAAACCTATAAA+AGG + chr7_3:59099210-59099229 Msa1112950:CDS 30.0%
ATGGGCAAAAACCTATAAAA+GGG + chr7_3:59099211-59099230 Msa1112950:CDS 30.0%
TATAGATGTAGCAGTTCAAA+AGG + chr7_3:59099355-59099374 Msa1112950:CDS 30.0%
ATAGATGTAGCAGTTCAAAA+GGG + chr7_3:59099356-59099375 Msa1112950:CDS 30.0%
AGAAAAGGAAGATTCTTTGA+TGG + chr7_3:59099624-59099643 Msa1112950:CDS 30.0%
ATTGCAATAGCAGAAGAAAA+TGG - chr7_3:59099739-59099758 None:intergenic 30.0%
TGCTATTGCAATTCCTAATT+GGG + chr7_3:59099747-59099766 Msa1112950:CDS 30.0%
!!! GCTTTTTCATTGAAGAGAAT+AGG + chr7_3:59099842-59099861 Msa1112950:three_prime_UTR 30.0%
! CGTTTTCTCTACAAACAAAA+AGG - chr7_3:59099888-59099907 None:intergenic 30.0%
! AATGGAAGTGTAGTATAGTA+GGG + chr7_3:59099935-59099954 Msa1112950:three_prime_UTR 30.0%
!! TTTTGGCTAAGATTTTGTTG+AGG + chr7_3:59100112-59100131 Msa1112950:three_prime_UTR 30.0%
TTTGATAAGGTAAAGAGAGA+GGG - chr7_3:59098491-59098510 None:intergenic 30.0%
! TTTTGATAAGGTAAAGAGAG+AGG - chr7_3:59098492-59098511 None:intergenic 30.0%
!! TTTTGGAGAAAGACAAAAGA+AGG - chr7_3:59098522-59098541 None:intergenic 30.0%
AATCTTCTTCCATAGGTAAA+GGG - chr7_3:59098582-59098601 None:intergenic 30.0%
TTTACCTATGGAAGAAGATT+GGG + chr7_3:59098582-59098601 Msa1112950:exon 30.0%
CAAGAAAGTGACAAAATTTG+AGG - chr7_3:59098745-59098764 None:intergenic 30.0%
TGTGATGATCTTGAAAAGAA+AGG - chr7_3:59098826-59098845 None:intergenic 30.0%
TCTTGTGTTTGAGCTAATTT+GGG - chr7_3:59098907-59098926 None:intergenic 30.0%
TATGGGCAAAAACCTATAAA+AGG + chr7_3:59099210-59099229 Msa1112950:CDS 30.0%
ATGGGCAAAAACCTATAAAA+GGG + chr7_3:59099211-59099230 Msa1112950:CDS 30.0%
TATAGATGTAGCAGTTCAAA+AGG + chr7_3:59099355-59099374 Msa1112950:CDS 30.0%
ATAGATGTAGCAGTTCAAAA+GGG + chr7_3:59099356-59099375 Msa1112950:CDS 30.0%
AGAAAAGGAAGATTCTTTGA+TGG + chr7_3:59099624-59099643 Msa1112950:CDS 30.0%
ATTGCAATAGCAGAAGAAAA+TGG - chr7_3:59099739-59099758 None:intergenic 30.0%
TGCTATTGCAATTCCTAATT+GGG + chr7_3:59099747-59099766 Msa1112950:CDS 30.0%
!!! GCTTTTTCATTGAAGAGAAT+AGG + chr7_3:59099842-59099861 Msa1112950:three_prime_UTR 30.0%
! CGTTTTCTCTACAAACAAAA+AGG - chr7_3:59099888-59099907 None:intergenic 30.0%
! AATGGAAGTGTAGTATAGTA+GGG + chr7_3:59099935-59099954 Msa1112950:three_prime_UTR 30.0%
!! TTTTGGCTAAGATTTTGTTG+AGG + chr7_3:59100112-59100131 Msa1112950:three_prime_UTR 30.0%
TTGATAAGGTAAAGAGAGAG+GGG - chr7_3:59098490-59098509 None:intergenic 35.0%
!!! TGAGGTTGTTGTTTCTCTTT+TGG - chr7_3:59098539-59098558 None:intergenic 35.0%
AAAGTCTGTAACAATGTCTG+AGG - chr7_3:59098557-59098576 None:intergenic 35.0%
CAATCTTCTTCCATAGGTAA+AGG - chr7_3:59098583-59098602 None:intergenic 35.0%
CTTTACCTATGGAAGAAGAT+TGG + chr7_3:59098581-59098600 Msa1112950:exon 35.0%
!! TGGAGTTTCTAGCTTCAAAA+GGG - chr7_3:59098777-59098796 None:intergenic 35.0%
!! ATGGAGTTTCTAGCTTCAAA+AGG - chr7_3:59098778-59098797 None:intergenic 35.0%
AAGTTCATGCAACTCTTCAA+TGG - chr7_3:59098797-59098816 None:intergenic 35.0%
CTCTTGTGTTTGAGCTAATT+TGG - chr7_3:59098908-59098927 None:intergenic 35.0%
AGTAGTAAACATTCACACCA+AGG + chr7_3:59098943-59098962 Msa1112950:CDS 35.0%
AGAGTCTCTCTTCAGATATA+TGG + chr7_3:59099175-59099194 Msa1112950:CDS 35.0%
GAGTCTCTCTTCAGATATAT+GGG + chr7_3:59099176-59099195 Msa1112950:CDS 35.0%
ATATGGGCATGGAGAAAATA+TGG + chr7_3:59099192-59099211 Msa1112950:CDS 35.0%
TATGGGCATGGAGAAAATAT+GGG + chr7_3:59099193-59099212 Msa1112950:CDS 35.0%
GTCAGAAAGTAGAGAAGAAA+AGG + chr7_3:59099609-59099628 Msa1112950:CDS 35.0%
CTGCTATTGCAATTCCTAAT+TGG + chr7_3:59099746-59099765 Msa1112950:CDS 35.0%
TATTGCAATTCCTAATTGGG+TGG + chr7_3:59099750-59099769 Msa1112950:CDS 35.0%
! GTAGAGAAAACGGAACATTT+TGG + chr7_3:59099896-59099915 Msa1112950:three_prime_UTR 35.0%
! CAATGGAAGTGTAGTATAGT+AGG + chr7_3:59099934-59099953 Msa1112950:three_prime_UTR 35.0%
TTGATAAGGTAAAGAGAGAG+GGG - chr7_3:59098490-59098509 None:intergenic 35.0%
!!! TGAGGTTGTTGTTTCTCTTT+TGG - chr7_3:59098539-59098558 None:intergenic 35.0%
AAAGTCTGTAACAATGTCTG+AGG - chr7_3:59098557-59098576 None:intergenic 35.0%
CAATCTTCTTCCATAGGTAA+AGG - chr7_3:59098583-59098602 None:intergenic 35.0%
CTTTACCTATGGAAGAAGAT+TGG + chr7_3:59098581-59098600 Msa1112950:exon 35.0%
!! TGGAGTTTCTAGCTTCAAAA+GGG - chr7_3:59098777-59098796 None:intergenic 35.0%
!! ATGGAGTTTCTAGCTTCAAA+AGG - chr7_3:59098778-59098797 None:intergenic 35.0%
AAGTTCATGCAACTCTTCAA+TGG - chr7_3:59098797-59098816 None:intergenic 35.0%
CTCTTGTGTTTGAGCTAATT+TGG - chr7_3:59098908-59098927 None:intergenic 35.0%
AGTAGTAAACATTCACACCA+AGG + chr7_3:59098943-59098962 Msa1112950:CDS 35.0%
AGAGTCTCTCTTCAGATATA+TGG + chr7_3:59099175-59099194 Msa1112950:CDS 35.0%
GAGTCTCTCTTCAGATATAT+GGG + chr7_3:59099176-59099195 Msa1112950:CDS 35.0%
ATATGGGCATGGAGAAAATA+TGG + chr7_3:59099192-59099211 Msa1112950:CDS 35.0%
TATGGGCATGGAGAAAATAT+GGG + chr7_3:59099193-59099212 Msa1112950:CDS 35.0%
GTCAGAAAGTAGAGAAGAAA+AGG + chr7_3:59099609-59099628 Msa1112950:CDS 35.0%
CTGCTATTGCAATTCCTAAT+TGG + chr7_3:59099746-59099765 Msa1112950:CDS 35.0%
TATTGCAATTCCTAATTGGG+TGG + chr7_3:59099750-59099769 Msa1112950:CDS 35.0%
! GTAGAGAAAACGGAACATTT+TGG + chr7_3:59099896-59099915 Msa1112950:three_prime_UTR 35.0%
! CAATGGAAGTGTAGTATAGT+AGG + chr7_3:59099934-59099953 Msa1112950:three_prime_UTR 35.0%
AGACTTTGTCCCTTTACCTA+TGG + chr7_3:59098570-59098589 Msa1112950:exon 40.0%
AGATCCCAATCTTCTTCCAT+AGG - chr7_3:59098589-59098608 None:intergenic 40.0%
GAAGAAGAAACAGAGGATGT+AGG - chr7_3:59098655-59098674 None:intergenic 40.0%
AACAGAGGAAGAAGAAACAG+AGG - chr7_3:59098662-59098681 None:intergenic 40.0%
ATAGAAGAGTAGCCACAAGA+AGG - chr7_3:59098703-59098722 None:intergenic 40.0%
TGTGGCTACTCTTCTATCTT+TGG + chr7_3:59098706-59098725 Msa1112950:CDS 40.0%
GGAGAAGTTTGCAAAGAAAG+AGG - chr7_3:59098850-59098869 None:intergenic 40.0%
AGTAAACATTCACACCAAGG+TGG + chr7_3:59098946-59098965 Msa1112950:CDS 40.0%
! CCTTCTTTTTGATCTTGGGT+TGG - chr7_3:59098980-59098999 None:intergenic 40.0%
CCAACCCAAGATCAAAAAGA+AGG + chr7_3:59098977-59098996 Msa1112950:CDS 40.0%
TCTCTTCAGATATATGGGCA+TGG + chr7_3:59099181-59099200 Msa1112950:CDS 40.0%
! GGATATGGTGACCCTTTTAT+AGG - chr7_3:59099225-59099244 None:intergenic 40.0%
TAAAAGGGTCACCATATCCA+AGG + chr7_3:59099226-59099245 Msa1112950:CDS 40.0%
! AGTTTTTGTGTGTAGGAGCA+GGG - chr7_3:59099462-59099481 None:intergenic 40.0%
! GCAAGAGAGTTTTTGTGTGT+AGG - chr7_3:59099469-59099488 None:intergenic 40.0%
ACACACAAAAACTCTCTTGC+TGG + chr7_3:59099469-59099488 Msa1112950:CDS 40.0%
!! TCTTTGTTGGTTTCAGCTTG+AGG - chr7_3:59099523-59099542 None:intergenic 40.0%
!! GGGTTTTGTAGGATCTTTGT+TGG - chr7_3:59099536-59099555 None:intergenic 40.0%
GAAGAAGAGGTTCAAACTCA+AGG + chr7_3:59099580-59099599 Msa1112950:CDS 40.0%
! TCTTTGATGGATGACGAAGA+AGG + chr7_3:59099637-59099656 Msa1112950:CDS 40.0%
GACGAAGAAGGAGATGAATT+TGG + chr7_3:59099649-59099668 Msa1112950:CDS 40.0%
! GAGAAAACGGAACATTTTGG+AGG + chr7_3:59099899-59099918 Msa1112950:three_prime_UTR 40.0%
TATAGTAGGGAGGAACTAGT+AGG + chr7_3:59099948-59099967 Msa1112950:three_prime_UTR 40.0%
AGACTTTGTCCCTTTACCTA+TGG + chr7_3:59098570-59098589 Msa1112950:exon 40.0%
AGATCCCAATCTTCTTCCAT+AGG - chr7_3:59098589-59098608 None:intergenic 40.0%
GAAGAAGAAACAGAGGATGT+AGG - chr7_3:59098655-59098674 None:intergenic 40.0%
AACAGAGGAAGAAGAAACAG+AGG - chr7_3:59098662-59098681 None:intergenic 40.0%
ATAGAAGAGTAGCCACAAGA+AGG - chr7_3:59098703-59098722 None:intergenic 40.0%
TGTGGCTACTCTTCTATCTT+TGG + chr7_3:59098706-59098725 Msa1112950:CDS 40.0%
GGAGAAGTTTGCAAAGAAAG+AGG - chr7_3:59098850-59098869 None:intergenic 40.0%
AGTAAACATTCACACCAAGG+TGG + chr7_3:59098946-59098965 Msa1112950:CDS 40.0%
! CCTTCTTTTTGATCTTGGGT+TGG - chr7_3:59098980-59098999 None:intergenic 40.0%
CCAACCCAAGATCAAAAAGA+AGG + chr7_3:59098977-59098996 Msa1112950:CDS 40.0%
TCTCTTCAGATATATGGGCA+TGG + chr7_3:59099181-59099200 Msa1112950:CDS 40.0%
! GGATATGGTGACCCTTTTAT+AGG - chr7_3:59099225-59099244 None:intergenic 40.0%
TAAAAGGGTCACCATATCCA+AGG + chr7_3:59099226-59099245 Msa1112950:CDS 40.0%
! AGTTTTTGTGTGTAGGAGCA+GGG - chr7_3:59099462-59099481 None:intergenic 40.0%
! GCAAGAGAGTTTTTGTGTGT+AGG - chr7_3:59099469-59099488 None:intergenic 40.0%
ACACACAAAAACTCTCTTGC+TGG + chr7_3:59099469-59099488 Msa1112950:CDS 40.0%
!! TCTTTGTTGGTTTCAGCTTG+AGG - chr7_3:59099523-59099542 None:intergenic 40.0%
!! GGGTTTTGTAGGATCTTTGT+TGG - chr7_3:59099536-59099555 None:intergenic 40.0%
GAAGAAGAGGTTCAAACTCA+AGG + chr7_3:59099580-59099599 Msa1112950:CDS 40.0%
! TCTTTGATGGATGACGAAGA+AGG + chr7_3:59099637-59099656 Msa1112950:CDS 40.0%
GACGAAGAAGGAGATGAATT+TGG + chr7_3:59099649-59099668 Msa1112950:CDS 40.0%
! GAGAAAACGGAACATTTTGG+AGG + chr7_3:59099899-59099918 Msa1112950:three_prime_UTR 40.0%
TATAGTAGGGAGGAACTAGT+AGG + chr7_3:59099948-59099967 Msa1112950:three_prime_UTR 40.0%
!!! GAAGGCGCTGACTTTTGATA+AGG - chr7_3:59098504-59098523 None:intergenic 45.0%
AGAAGATTGGGATCTCCATG+CGG + chr7_3:59098594-59098613 Msa1112950:CDS 45.0%
AGAAACAGAGGATGTAGGTG+TGG - chr7_3:59098650-59098669 None:intergenic 45.0%
!! ACAAGAAGGTTCAGGTTGCA+GGG - chr7_3:59098689-59098708 None:intergenic 45.0%
AGCTAATTTGGGTGAAGCAG+AGG - chr7_3:59098896-59098915 None:intergenic 45.0%
TCTGAAGAGAGACTCTCAAC+TGG - chr7_3:59099171-59099190 None:intergenic 45.0%
! GAGTTTTTGTGTGTAGGAGC+AGG - chr7_3:59099463-59099482 None:intergenic 45.0%
!! ACTCTCTTGCTGGTTCAACA+AGG + chr7_3:59099479-59099498 Msa1112950:CDS 45.0%
! TCAGCTTGAGGTGGTGTTAA+TGG - chr7_3:59099511-59099530 None:intergenic 45.0%
!! TTGTTGGTTTCAGCTTGAGG+TGG - chr7_3:59099520-59099539 None:intergenic 45.0%
!! GTAGGAGAAGAGGGTTTTGT+AGG - chr7_3:59099547-59099566 None:intergenic 45.0%
GCACTATTAGCCACCCAATT+AGG - chr7_3:59099763-59099782 None:intergenic 45.0%
GGAGGAATCTTTGCTGACAA+TGG + chr7_3:59099917-59099936 Msa1112950:three_prime_UTR 45.0%
! GGAAGTGTAGTATAGTAGGG+AGG + chr7_3:59099938-59099957 Msa1112950:three_prime_UTR 45.0%
!!! GAAGGCGCTGACTTTTGATA+AGG - chr7_3:59098504-59098523 None:intergenic 45.0%
AGAAGATTGGGATCTCCATG+CGG + chr7_3:59098594-59098613 Msa1112950:CDS 45.0%
AGAAACAGAGGATGTAGGTG+TGG - chr7_3:59098650-59098669 None:intergenic 45.0%
!! ACAAGAAGGTTCAGGTTGCA+GGG - chr7_3:59098689-59098708 None:intergenic 45.0%
AGCTAATTTGGGTGAAGCAG+AGG - chr7_3:59098896-59098915 None:intergenic 45.0%
TCTGAAGAGAGACTCTCAAC+TGG - chr7_3:59099171-59099190 None:intergenic 45.0%
! GAGTTTTTGTGTGTAGGAGC+AGG - chr7_3:59099463-59099482 None:intergenic 45.0%
!! ACTCTCTTGCTGGTTCAACA+AGG + chr7_3:59099479-59099498 Msa1112950:CDS 45.0%
! TCAGCTTGAGGTGGTGTTAA+TGG - chr7_3:59099511-59099530 None:intergenic 45.0%
!! TTGTTGGTTTCAGCTTGAGG+TGG - chr7_3:59099520-59099539 None:intergenic 45.0%
!! GTAGGAGAAGAGGGTTTTGT+AGG - chr7_3:59099547-59099566 None:intergenic 45.0%
GCACTATTAGCCACCCAATT+AGG - chr7_3:59099763-59099782 None:intergenic 45.0%
GGAGGAATCTTTGCTGACAA+TGG + chr7_3:59099917-59099936 Msa1112950:three_prime_UTR 45.0%
! GGAAGTGTAGTATAGTAGGG+AGG + chr7_3:59099938-59099957 Msa1112950:three_prime_UTR 45.0%
TGTAGGTGTGGTGGTTGAAG+TGG - chr7_3:59098638-59098657 None:intergenic 50.0%
AACAGAGGATGTAGGTGTGG+TGG - chr7_3:59098647-59098666 None:intergenic 50.0%
AGGTTGCAGGGGAAAAACAG+AGG - chr7_3:59098677-59098696 None:intergenic 50.0%
!! CAAGAAGGTTCAGGTTGCAG+GGG - chr7_3:59098688-59098707 None:intergenic 50.0%
!! CACAAGAAGGTTCAGGTTGC+AGG - chr7_3:59098690-59098709 None:intergenic 50.0%
CTGCAACCTGAACCTTCTTG+TGG + chr7_3:59098688-59098707 Msa1112950:CDS 50.0%
GAGTAGCCACAAGAAGGTTC+AGG - chr7_3:59098697-59098716 None:intergenic 50.0%
CCTGAGGTTGTAGGAGAAGA+GGG - chr7_3:59099556-59099575 None:intergenic 50.0%
TCCTGAGGTTGTAGGAGAAG+AGG - chr7_3:59099557-59099576 None:intergenic 50.0%
TCTTCTCCTACAACCTCAGG+AGG + chr7_3:59099556-59099575 Msa1112950:CDS 50.0%
TCTTCACCTCCTGAGGTTGT+AGG - chr7_3:59099565-59099584 None:intergenic 50.0%
AACCTCAGGAGGTGAAGAAG+AGG + chr7_3:59099567-59099586 Msa1112950:CDS 50.0%
AACCTCTTCTTCACCTCCTG+AGG - chr7_3:59099572-59099591 None:intergenic 50.0%
TGTAGGTGTGGTGGTTGAAG+TGG - chr7_3:59098638-59098657 None:intergenic 50.0%
AACAGAGGATGTAGGTGTGG+TGG - chr7_3:59098647-59098666 None:intergenic 50.0%
AGGTTGCAGGGGAAAAACAG+AGG - chr7_3:59098677-59098696 None:intergenic 50.0%
!! CAAGAAGGTTCAGGTTGCAG+GGG - chr7_3:59098688-59098707 None:intergenic 50.0%
!! CACAAGAAGGTTCAGGTTGC+AGG - chr7_3:59098690-59098709 None:intergenic 50.0%
CTGCAACCTGAACCTTCTTG+TGG + chr7_3:59098688-59098707 Msa1112950:CDS 50.0%
GAGTAGCCACAAGAAGGTTC+AGG - chr7_3:59098697-59098716 None:intergenic 50.0%
CCTGAGGTTGTAGGAGAAGA+GGG - chr7_3:59099556-59099575 None:intergenic 50.0%
TCCTGAGGTTGTAGGAGAAG+AGG - chr7_3:59099557-59099576 None:intergenic 50.0%
TCTTCTCCTACAACCTCAGG+AGG + chr7_3:59099556-59099575 Msa1112950:CDS 50.0%
TCTTCACCTCCTGAGGTTGT+AGG - chr7_3:59099565-59099584 None:intergenic 50.0%
AACCTCAGGAGGTGAAGAAG+AGG + chr7_3:59099567-59099586 Msa1112950:CDS 50.0%
AACCTCTTCTTCACCTCCTG+AGG - chr7_3:59099572-59099591 None:intergenic 50.0%
AGATTGGGATCTCCATGCGG+TGG + chr7_3:59098597-59098616 Msa1112950:CDS 55.0%
GATCTCCATGCGGTGGTTAG+AGG + chr7_3:59098604-59098623 Msa1112950:CDS 55.0%
AGCAACCTCTAACCACCGCA+TGG - chr7_3:59098612-59098631 None:intergenic 55.0%
AGGTGTGGTGGTTGAAGTGG+TGG - chr7_3:59098635-59098654 None:intergenic 55.0%
!! GGTTGGTGAGAGAACCACCT+TGG - chr7_3:59098963-59098982 None:intergenic 55.0%
CCCTCTTCTCCTACAACCTC+AGG + chr7_3:59099553-59099572 Msa1112950:CDS 55.0%
AGATTGGGATCTCCATGCGG+TGG + chr7_3:59098597-59098616 Msa1112950:CDS 55.0%
GATCTCCATGCGGTGGTTAG+AGG + chr7_3:59098604-59098623 Msa1112950:CDS 55.0%
AGCAACCTCTAACCACCGCA+TGG - chr7_3:59098612-59098631 None:intergenic 55.0%
AGGTGTGGTGGTTGAAGTGG+TGG - chr7_3:59098635-59098654 None:intergenic 55.0%
!! GGTTGGTGAGAGAACCACCT+TGG - chr7_3:59098963-59098982 None:intergenic 55.0%
CCCTCTTCTCCTACAACCTC+AGG + chr7_3:59099553-59099572 Msa1112950:CDS 55.0%
GCTGCTGCTGCTACAGCTGC+TGG + chr7_3:59099781-59099800 Msa1112950:CDS 65.0%
GCTGCTGCTACAGCTGCTGG+TGG + chr7_3:59099784-59099803 Msa1112950:CDS 65.0%
GCTGCTGCTGCTACAGCTGC+TGG + chr7_3:59099781-59099800 Msa1112950:CDS 65.0%
GCTGCTGCTACAGCTGCTGG+TGG + chr7_3:59099784-59099803 Msa1112950:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 59098487 59100151 59098487 ID=Msa1112950;Name=Msa1112950
chr7_3 mRNA 59098487 59100151 59098487 ID=Msa1112950-mRNA-1;Parent=Msa1112950;Name=Msa1112950-mRNA-1;_AED=0.04;_eAED=0.04;_QI=102|1|1|1|1|1|3|338|328
chr7_3 exon 59098487 59098998 59098487 ID=Msa1112950-mRNA-1:exon:13037;Parent=Msa1112950-mRNA-1
chr7_3 exon 59099137 59099247 59099137 ID=Msa1112950-mRNA-1:exon:13038;Parent=Msa1112950-mRNA-1
chr7_3 exon 59099348 59100151 59099348 ID=Msa1112950-mRNA-1:exon:13039;Parent=Msa1112950-mRNA-1
chr7_3 five_prime_UTR 59098487 59098588 59098487 ID=Msa1112950-mRNA-1:five_prime_utr;Parent=Msa1112950-mRNA-1
chr7_3 CDS 59098589 59098998 59098589 ID=Msa1112950-mRNA-1:cds;Parent=Msa1112950-mRNA-1
chr7_3 CDS 59099137 59099247 59099137 ID=Msa1112950-mRNA-1:cds;Parent=Msa1112950-mRNA-1
chr7_3 CDS 59099348 59099813 59099348 ID=Msa1112950-mRNA-1:cds;Parent=Msa1112950-mRNA-1
chr7_3 three_prime_UTR 59099814 59100151 59099814 ID=Msa1112950-mRNA-1:three_prime_utr;Parent=Msa1112950-mRNA-1
Gene Sequence

>Msa1112950

ATGGAAGAAGATTGGGATCTCCATGCGGTGGTTAGAGGTTGCTCCACCACTTCAACCACCACACCTACATCCTCTGTTTCTTCTTCCTCTGTTTTTCCCCTGCAACCTGAACCTTCTTGTGGCTACTCTTCTATCTTTGGTAGTGAACAAAAACCTCAAATTTTGTCACTTTCTTGTTCTACACACCCTTTTGAAGCTAGAAACTCCATTGAAGAGTTGCATGAACTTTGCAAACCTTTCTTTTCAAGATCATCACAGCCTCTTTCTTTGCAAACTTCTCCTTTGTTTTCTTCATTCTCTTATTCCTCTGCTTCACCCAAATTAGCTCAAACACAAGAGAAACAACAACTTCAAAGTAGTAAACATTCACACCAAGGTGGTTCTCTCACCAACCCAAGATCAAAAAGAAGGAAAAATCAACTTAAGAAAGTTTGTCAAGTACCAGTTGAGAGTCTCTCTTCAGATATATGGGCATGGAGAAAATATGGGCAAAAACCTATAAAAGGGTCACCATATCCAAGGGGCTATTATAGATGTAGCAGTTCAAAAGGGTGTTTAGCAAGAAAACAAGTTGAAAGAAACAGAACAGATCCAACAATGTTCATAGTAACATATACATGTGAACACAATCACCCTGCTCCTACACACAAAAACTCTCTTGCTGGTTCAACAAGGCAGAAGCCATTAACACCACCTCAAGCTGAAACCAACAAAGATCCTACAAAACCCTCTTCTCCTACAACCTCAGGAGGTGAAGAAGAGGTTCAAACTCAAGGAGAAAAGTCAGAAAGTAGAGAAGAAAAGGAAGATTCTTTGATGGATGACGAAGAAGGAGATGAATTTGGTTTATCTGATGTTGTTTTAAGTGATGATTTCTTTGAGAGTTTAGATGAATTTGGTTTCACAGATCCATTTTCTTCTGCTATTGCAATTCCTAATTGGGTGGCTAATAGTGCTGCTGCTGCTACAGCTGCTGGTGGTAGCTGA
Protein sequence

>Msa1112950

MEEDWDLHAVVRGCSTTSTTTPTSSVSSSSVFPLQPEPSCGYSSIFGSEQKPQILSLSCSTHPFEARNSIEELHELCKPFFSRSSQPLSLQTSPLFSSFSYSSASPKLAQTQEKQQLQSSKHSHQGGSLTNPRSKRRKNQLKKVCQVPVESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRTDPTMFIVTYTCEHNHPAPTHKNSLAGSTRQKPLTPPQAETNKDPTKPSSPTTSGGEEEVQTQGEKSESREEKEDSLMDDEEGDEFGLSDVVLSDDFFESLDEFGFTDPFSSAIAIPNWVANSAAAATAAGGS*