AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1113330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113330 MtrunA17_Chr7g0249221 99.043 418 4 0 1 418 1 418 0.0 855
Msa1113330 MtrunA17_Chr4g0066941 43.705 421 176 12 27 395 43 454 5.70e-96 296
Msa1113330 MtrunA17_Chr1g0195891 48.297 323 152 7 9 325 30 343 6.58e-92 281
Msa1113330 MtrunA17_Chr1g0195891 52.632 76 36 0 275 350 91 166 7.48e-19 87.4
Msa1113330 MtrunA17_Chr1g0195891 58.182 55 21 1 72 126 295 347 3.04e-13 70.5
Msa1113330 MtrunA17_Chr2g0286151 42.079 404 199 11 8 388 26 417 1.80e-89 279
Msa1113330 MtrunA17_Chr5g0438891 44.023 343 152 12 23 357 32 342 2.07e-89 276
Msa1113330 MtrunA17_Chr3g0116431 38.187 364 176 8 4 353 150 478 1.09e-74 241
Msa1113330 MtrunA17_Chr3g0116431 42.697 89 36 2 275 355 171 252 8.74e-14 73.2
Msa1113330 MtrunA17_Chr4g0058011 37.433 374 186 12 27 384 231 572 2.62e-69 229
Msa1113330 MtrunA17_Chr8g0356241 33.249 394 186 14 5 350 110 474 1.50e-51 181
Msa1113330 MtrunA17_Chr8g0356241 35.088 171 66 3 28 153 310 480 5.38e-26 109
Msa1113330 MtrunA17_Chr8g0356241 49.367 79 35 2 275 353 190 263 2.46e-17 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113330 AT3G02830.1 61.098 419 112 9 8 417 18 394 2.29e-176 498
Msa1113330 AT3G02830.2 61.058 416 111 9 11 417 1 374 1.45e-174 493
Msa1113330 AT5G16540.1 53.241 432 126 11 1 416 1 372 1.68e-151 434
Msa1113330 AT5G16540.3 54.745 411 121 10 11 416 1 351 1.16e-149 429
Msa1113330 AT5G16540.2 51.852 432 125 12 1 416 1 365 5.67e-144 415
Msa1113330 AT5G16540.4 56.113 319 86 7 11 325 1 269 2.04e-121 353
Msa1113330 AT5G16540.4 42.500 120 61 2 275 391 63 177 2.54e-21 93.6
Msa1113330 AT5G16540.4 41.053 95 49 2 275 363 18 111 4.47e-16 78.6
Msa1113330 AT2G47850.1 50.134 373 160 9 2 366 23 377 1.79e-119 356
Msa1113330 AT2G47850.3 50.134 373 160 9 2 366 23 377 1.79e-119 356
Msa1113330 AT2G47850.2 45.753 365 150 10 8 366 29 351 1.47e-96 296
Msa1113330 AT5G18550.3 45.104 337 157 8 27 349 16 338 4.58e-96 295
Msa1113330 AT5G18550.3 33.548 155 66 5 72 192 265 416 1.97e-17 84.3
Msa1113330 AT5G18550.4 45.104 337 157 8 27 349 48 370 7.30e-96 295
Msa1113330 AT5G18550.4 33.548 155 66 5 72 192 297 448 1.99e-17 84.3
Msa1113330 AT5G18550.1 45.104 337 157 8 27 349 48 370 8.14e-96 295
Msa1113330 AT5G18550.1 33.548 155 66 5 72 192 297 448 1.86e-17 84.7
Msa1113330 AT3G06410.1 43.767 361 166 10 11 349 33 378 9.72e-89 277
Msa1113330 AT5G18550.2 42.730 337 152 8 27 349 48 357 3.55e-88 275
Msa1113330 AT5G18550.2 30.968 155 57 5 72 192 297 435 2.78e-13 71.6
Msa1113330 AT1G04990.1 41.618 346 164 7 8 351 25 334 8.68e-86 267
Msa1113330 AT1G04990.6 41.618 346 164 7 8 351 25 334 8.68e-86 267
Msa1113330 AT1G04990.2 41.618 346 164 7 8 351 25 334 8.68e-86 267
Msa1113330 AT3G48440.1 42.775 346 160 10 19 351 99 419 1.19e-82 261
Msa1113330 AT3G48440.1 34.328 134 40 2 265 350 97 230 3.57e-16 80.5
Msa1113330 AT1G04990.5 39.595 346 151 8 8 351 25 314 3.65e-77 244
Msa1113330 AT2G32930.2 36.235 425 219 13 8 413 22 413 7.28e-76 243
Msa1113330 AT2G32930.3 36.754 419 213 13 14 413 1 386 1.63e-75 242
Msa1113330 AT2G47850.4 48.679 265 116 8 110 366 3 255 2.44e-73 233
Msa1113330 AT2G47850.4 57.895 76 32 0 72 147 164 239 1.43e-25 107
Msa1113330 AT2G47850.4 46.053 76 40 1 27 101 164 239 8.45e-17 81.6
Msa1113330 AT5G63260.1 39.130 345 184 9 27 366 98 421 5.80e-72 233
Msa1113330 AT5G63260.1 34.677 124 34 1 274 350 97 220 1.92e-15 78.2
Msa1113330 AT2G32930.1 35.529 425 218 14 8 413 22 409 7.73e-71 230
Msa1113330 AT5G63260.2 37.396 361 184 10 27 366 98 437 6.71e-68 223
Msa1113330 AT1G04990.3 40.809 272 125 6 82 351 16 253 1.57e-59 197
Msa1113330 AT1G04990.3 28.413 271 155 9 38 304 17 252 1.79e-19 89.0
Msa1113330 AT3G12680.1 33.994 353 180 10 27 350 171 499 1.94e-55 191
Msa1113330 AT3G12680.1 34.973 183 77 3 13 153 323 505 6.16e-30 121
Msa1113330 AT3G12680.1 32.778 180 79 5 268 415 258 427 2.89e-19 90.5
Msa1113330 AT3G12680.1 39.640 111 47 2 5 101 395 499 3.41e-19 90.1
Msa1113330 AT3G12680.1 42.857 84 39 3 274 350 170 251 3.28e-12 68.6
Msa1113330 AT1G04990.4 38.043 276 115 7 78 351 12 233 8.32e-51 173
Msa1113330 AT1G48195.1 53.846 78 36 0 272 349 3 80 1.50e-25 99.8
Msa1113330 AT1G48195.1 48.684 76 39 0 71 146 5 80 8.73e-19 80.9
Msa1113330 AT1G48195.1 40.000 80 47 1 22 100 1 80 3.17e-13 65.5
Msa1113330 AT1G29600.2 38.095 84 39 3 24 106 125 196 2.80e-11 64.7
Msa1113330 AT1G29600.1 38.095 84 39 3 24 106 119 190 2.96e-11 64.7

Find 186 sgRNAs with CRISPR-Local

Find 514 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACTGGTCAATGCAAATT+TGG 0.130342 7_3:-59553220 Msa1113330:CDS
TCTGGCTGCCCTAACCTTTC+TGG 0.134070 7_3:+59555406 None:intergenic
AAAACAGGAACTTGCAAATT+TGG 0.136623 7_3:-59553650 Msa1113330:CDS
GCAACCCCAGCCTTGTCTTT+AGG 0.238635 7_3:+59553605 None:intergenic
GGGGCCTTGCCACCTTGGAC+TGG 0.268499 7_3:+59553045 None:intergenic
AAAGACAAGGCTGGGGTTGC+TGG 0.272337 7_3:-59553602 Msa1113330:CDS
ACTCCTTGAGGTAGAATTAA+AGG 0.289469 7_3:+59553010 None:intergenic
CAAGTACATGCCTGACATTC+TGG 0.292463 7_3:+59555388 None:intergenic
AGAACCGGCCTTTGTAGATT+TGG 0.298865 7_3:-59555996 Msa1113330:CDS
TTCTCTCTTGGTTGAATTGA+GGG 0.301200 7_3:-59557096 Msa1113330:five_prime_UTR
CGGTATGGCATATGCAAATT+TGG 0.310290 7_3:-59550889 Msa1113330:CDS
TTATTCTTTGTTCTCATTTG+TGG 0.315569 7_3:-59557250 Msa1113330:five_prime_UTR
CAAGGAGTGGTTTCAGTGCC+TGG 0.319809 7_3:-59552995 Msa1113330:CDS
TCATAAATATTTGTCACATT+TGG 0.326359 7_3:-59550430 Msa1113330:three_prime_UTR
CCTGATTCCATTGTTTCACT+TGG 0.338494 7_3:+59556065 None:intergenic
TGAATTGATTTCCCCATTGC+TGG 0.341453 7_3:-59550567 Msa1113330:three_prime_UTR
CTGGCTGCCCTAACCTTTCT+GGG 0.342700 7_3:+59555407 None:intergenic
TTCATTATTCTAGGGTCAAA+TGG 0.349387 7_3:-59552335 Msa1113330:intron
TTCATGTAGAATTGGCATTC+AGG 0.354277 7_3:+59552136 None:intergenic
GTGGATAGCCTAAAATGTTC+AGG 0.355882 7_3:+59553570 None:intergenic
CCATCCTCAACCAAGTAATA+TGG 0.367721 7_3:-59553179 Msa1113330:CDS
GTTGGCAAATCCAGTCGTTC+TGG 0.368904 7_3:-59550480 Msa1113330:three_prime_UTR
AGGTGATGCGGATACATTAT+AGG 0.369007 7_3:+59550828 None:intergenic
GGGCCTTGCCACCTTGGACT+GGG 0.370552 7_3:+59553046 None:intergenic
CACAATAATCAATACTTCAT+TGG 0.381097 7_3:+59550145 None:intergenic
GAACTGGTCAATGCAAATTT+GGG 0.387377 7_3:-59553219 Msa1113330:CDS
ATAATGTTGTCTCTTGGAAA+TGG 0.390974 7_3:-59550638 Msa1113330:exon
TGTGCTTATTATTTAAGAAC+TGG 0.391344 7_3:-59553235 Msa1113330:CDS
TGCCAACTGCATTCAATAGT+AGG 0.395511 7_3:+59550496 None:intergenic
GTATATTCTCAATACCGTTC+TGG 0.396199 7_3:-59552223 Msa1113330:CDS
GACTGGACAGTAGGATAAAC+AGG 0.398708 7_3:+59553136 None:intergenic
CGTTAAAGAAAAGGATTTGC+TGG 0.401745 7_3:+59550285 None:intergenic
GGTTTAATCATCCTCCTAAC+AGG 0.403742 7_3:-59555962 Msa1113330:CDS
GTTCGTACCAGCTTCCTGTT+AGG 0.404770 7_3:+59555948 None:intergenic
AGGGGACTCAAAACACAATC+AGG 0.404981 7_3:+59552046 None:intergenic
TTTCTCTCTTGGTTGAATTG+AGG 0.405932 7_3:-59557097 Msa1113330:five_prime_UTR
CTCTGTACATCTCCAGCAAT+GGG 0.406575 7_3:+59550555 None:intergenic
TTACAGTACTATCTGAAAAC+AGG 0.407139 7_3:-59553665 Msa1113330:intron
ATATATAATAAATCAATGTT+TGG 0.409540 7_3:-59550324 Msa1113330:three_prime_UTR
AATTGGCATTCAGGCTGATC+AGG 0.416142 7_3:+59552145 None:intergenic
TGCAATGGCAAGCCAACATT+AGG 0.418386 7_3:-59550218 Msa1113330:three_prime_UTR
CAACTGTTTCGTTAAAGAAA+AGG 0.419546 7_3:+59550276 None:intergenic
CACTTTGTGTATTCTATTCG+CGG 0.422525 7_3:-59550909 Msa1113330:CDS
GAGACTAGACCGAATCCTTC+CGG 0.432361 7_3:-59550685 Msa1113330:CDS
TCAGGCTGATCAGGTCTCTC+TGG 0.434727 7_3:+59552154 None:intergenic
ATCATCCTAAAGACAAGGCT+GGG 0.436765 7_3:-59553610 Msa1113330:CDS
ATGCGGCAGGAATTACAAAT+TGG 0.438347 7_3:-59553087 Msa1113330:CDS
CTTGAGGGGCCTTGCCACCT+TGG 0.438502 7_3:+59553040 None:intergenic
GCCGCAGGACGGCGTCTGCT+AGG 0.441580 7_3:-59550796 Msa1113330:CDS
AATGGAATCAGGACCGTATC+CGG 0.442898 7_3:-59556054 Msa1113330:CDS
CGTCCTGCGGCTTCAGCTAA+AGG 0.445120 7_3:+59550808 None:intergenic
TGTGTATTCTATTCGCGGTA+TGG 0.447990 7_3:-59550904 Msa1113330:CDS
CTTGGTTGAATTGAGGGTGG+AGG 0.450142 7_3:-59557090 Msa1113330:five_prime_UTR
GTTAGGGCAGCCAGAATGTC+AGG 0.459032 7_3:-59555398 Msa1113330:intron
TGCAAAGCATAGAATCCTAC+TGG 0.461939 7_3:+59552193 None:intergenic
GGCGAGTTCCCAGAAAGGTT+AGG 0.462182 7_3:-59555415 Msa1113330:CDS
TATATGCCGCATCGCATCAA+TGG 0.463698 7_3:-59556953 Msa1113330:exon
ATTGGAAGTACCATATTACT+TGG 0.463756 7_3:+59553169 None:intergenic
AAGGATATTGATCCTAATGT+TGG 0.464076 7_3:+59550206 None:intergenic
TCATCATCACCGGAAGGATT+CGG 0.466357 7_3:+59550676 None:intergenic
CCAAGTGAAACAATGGAATC+AGG 0.466799 7_3:-59556065 Msa1113330:CDS
TGTTCATATTACATAAGAAC+CGG 0.466818 7_3:-59556011 Msa1113330:CDS
CTTATGTAATATGAACAATC+TGG 0.467160 7_3:+59556017 None:intergenic
TCATTTCTCATTGTTTGTTG+TGG 0.469765 7_3:+59552301 None:intergenic
TAATGTTGTCTCTTGGAAAT+GGG 0.470925 7_3:-59550637 Msa1113330:three_prime_UTR
TCATTATTCTAGGGTCAAAT+GGG 0.471117 7_3:-59552334 Msa1113330:intron
GCGAGTTCCCAGAAAGGTTA+GGG 0.476077 7_3:-59555414 Msa1113330:CDS
TATGAACAATCTGGTTCTCC+AGG 0.476295 7_3:+59556026 None:intergenic
TCTCCAGGATGCTCCGGATA+CGG 0.476462 7_3:+59556041 None:intergenic
TCTGATAATGAAAGCCTCCT+TGG 0.480995 7_3:+59550706 None:intergenic
CTAGAAAATGCAGGACTCCC+AGG 0.483437 7_3:-59552247 Msa1113330:CDS
ATTAAAGGTGCATAACTTGA+GGG 0.486909 7_3:+59553025 None:intergenic
TTCTTTGTTCTCATTTGTGG+AGG 0.495948 7_3:-59557247 Msa1113330:five_prime_UTR
CATCATCCTAAAGACAAGGC+TGG 0.496258 7_3:-59553611 Msa1113330:CDS
AAGGAGTGGTTTCAGTGCCT+GGG 0.496753 7_3:-59552994 Msa1113330:CDS
ATGAGATGAGGTTGGTTGGT+TGG 0.498789 7_3:-59557276 Msa1113330:five_prime_UTR
TTGAGGGTGGAGGTTGATCT+CGG 0.498899 7_3:-59557080 Msa1113330:five_prime_UTR
GCAAATTTGGAGCCACATGC+AGG 0.499420 7_3:-59553637 Msa1113330:CDS
ATGAGAAATGATCAAACCTA+TGG 0.501705 7_3:-59552289 Msa1113330:CDS
TGCCAATTCTACATGAAGAC+GGG 0.502951 7_3:-59552130 Msa1113330:CDS
CGGTATTGAGAATATACCCC+TGG 0.505547 7_3:+59552229 None:intergenic
GACTGCTGACCTGCTGTAGT+TGG 0.505631 7_3:+59553112 None:intergenic
TAAACAGGAGAACCTCTCAT+TGG 0.506558 7_3:+59553151 None:intergenic
TCTGGTTCTCCAGGATGCTC+CGG 0.509312 7_3:+59556035 None:intergenic
CGTCTGCTAGGTTCTTCATC+AGG 0.511541 7_3:-59550784 Msa1113330:CDS
AGTTTGTGAGTGTGACAGAC+AGG 0.516203 7_3:-59557003 Msa1113330:five_prime_UTR
GGACCGTATCCGGAGCATCC+TGG 0.519002 7_3:-59556044 Msa1113330:CDS
AGGATTCTATGCTTTGCAAA+GGG 0.522548 7_3:-59552188 Msa1113330:CDS
TCAGAAGGACTTGTTGAGTC+GGG 0.523918 7_3:-59550739 Msa1113330:CDS
TGCTCCAAATCTACAAAGGC+CGG 0.524252 7_3:+59555992 None:intergenic
TCTCTTGGTTGAATTGAGGG+TGG 0.525048 7_3:-59557093 Msa1113330:five_prime_UTR
AGTACCATATTACTTGGTTG+AGG 0.526229 7_3:+59553175 None:intergenic
AACCTACTATTGAATGCAGT+TGG 0.529624 7_3:-59550498 Msa1113330:three_prime_UTR
ATAGATAGATGAGATGAGGT+TGG 0.533233 7_3:-59557284 Msa1113330:five_prime_UTR
AAAAGAGAAGAAAACCTTGA+GGG 0.534377 7_3:+59556917 None:intergenic
GGATGGTCAAACTTGCAGCT+TGG 0.536098 7_3:+59550865 None:intergenic
TGAGGGATAATGTTGTCTCT+TGG 0.536943 7_3:-59550644 Msa1113330:exon
AACTGAAGAAATGTTCACAT+TGG 0.537104 7_3:+59550400 None:intergenic
ATTGCCACTGCACGGATGAA+AGG 0.537603 7_3:-59555436 Msa1113330:CDS
CAGGACGCAAAGGAAGGCCA+AGG 0.538208 7_3:+59552026 None:intergenic
TGTATAGAAATTTGTTGCAA+TGG 0.538257 7_3:-59550233 Msa1113330:three_prime_UTR
CCATATTACTTGGTTGAGGA+TGG 0.539028 7_3:+59553179 None:intergenic
TGCAAGTTTGACCATCCAAT+GGG 0.542643 7_3:-59550859 Msa1113330:CDS
CGTACCAGCTTCCTGTTAGG+AGG 0.546788 7_3:+59555951 None:intergenic
AGGTGAAGATTCCCATTGGA+TGG 0.548300 7_3:+59550848 None:intergenic
GACCTGCTGTAGTTGGAGAC+TGG 0.551761 7_3:+59553119 None:intergenic
CGTTCTGGCTCTGTTCCAGT+AGG 0.552611 7_3:-59552208 Msa1113330:CDS
ATCATCAATGTCATCATCAC+CGG 0.554108 7_3:+59550666 None:intergenic
GGTCAGCAGTCATATGCGGC+AGG 0.561665 7_3:-59553100 Msa1113330:CDS
TCATCCTCCTAACAGGAAGC+TGG 0.561961 7_3:-59555955 Msa1113330:intron
ATCAGAAGGACTTGTTGAGT+CGG 0.563006 7_3:-59550740 Msa1113330:CDS
TAGAAAATGCAGGACTCCCA+GGG 0.563600 7_3:-59552246 Msa1113330:CDS
TAGGATTCTATGCTTTGCAA+AGG 0.563647 7_3:-59552189 Msa1113330:CDS
ACTCTGTACATCTCCAGCAA+TGG 0.565187 7_3:+59550554 None:intergenic
GCATTAAGTTTATCATCAGA+AGG 0.566420 7_3:-59550754 Msa1113330:CDS
TGGATAGCCTAAAATGTTCA+GGG 0.569189 7_3:+59553571 None:intergenic
AGCATGAAATCCAGAACGAC+TGG 0.570834 7_3:+59550470 None:intergenic
CTTGAGGCCAAGTGAAACAA+TGG 0.571072 7_3:-59556072 Msa1113330:CDS
CTCAAAACACAATCAGGGGC+AGG 0.571149 7_3:+59552052 None:intergenic
TTTAATTCTACCTCAAGGAG+TGG 0.571343 7_3:-59553008 Msa1113330:CDS
ATAGATAGATAGATGAGATG+AGG 0.572239 7_3:-59557288 Msa1113330:five_prime_UTR
CGCGAATAGAATACACAAAG+TGG 0.573840 7_3:+59550910 None:intergenic
TGAGGGTGGAGGTTGATCTC+GGG 0.574521 7_3:-59557079 Msa1113330:five_prime_UTR
GCACCTTTAATTCTACCTCA+AGG 0.574609 7_3:-59553013 Msa1113330:CDS
CTGCAAGTTTGACCATCCAA+TGG 0.575545 7_3:-59550860 Msa1113330:CDS
GTCCAGTCTCCAACTACAGC+AGG 0.575929 7_3:-59553121 Msa1113330:CDS
GAATCGTCCTCTCACGTGGA+TGG 0.576252 7_3:+59552074 None:intergenic
AATTAAAGGTGCATAACTTG+AGG 0.578502 7_3:+59553024 None:intergenic
ATAGATGAGATGAGGTTGGT+TGG 0.578888 7_3:-59557280 Msa1113330:five_prime_UTR
TCACCTTTAGCTGAAGCCGC+AGG 0.583482 7_3:-59550811 Msa1113330:CDS
ATGCCCAGTCCAAGGTGGCA+AGG 0.584162 7_3:-59553049 Msa1113330:CDS
GGGGACTCAAAACACAATCA+GGG 0.586867 7_3:+59552047 None:intergenic
TTATAGGTGAAGATTCCCAT+TGG 0.587312 7_3:+59550844 None:intergenic
GTCAGGCTATTGCCACTGCA+CGG 0.597527 7_3:-59555444 Msa1113330:intron
CAAGGTGATCTAGAAAATGC+AGG 0.597821 7_3:-59552256 Msa1113330:CDS
AGGACGCAAAGGAAGGCCAA+GGG 0.598969 7_3:+59552027 None:intergenic
GTAGTTGGAGACTGGACAGT+AGG 0.599936 7_3:+59553127 None:intergenic
GAGAAGAAAACCTTGAGGGA+TGG 0.601696 7_3:+59556921 None:intergenic
AAGAGTGAGTTAACAAAACG+TGG 0.605140 7_3:-59557033 Msa1113330:five_prime_UTR
AACTCACAGGACGCAAAGGA+AGG 0.607839 7_3:+59552020 None:intergenic
CTCGCCTTTCATCCGTGCAG+TGG 0.608806 7_3:+59555432 None:intergenic
CAATGTGGCAAATGAGCTTG+AGG 0.610902 7_3:-59556088 Msa1113330:CDS
ATGCCAATTCTACATGAAGA+CGG 0.611485 7_3:-59552131 Msa1113330:CDS
GAATACGATGCCATCCCTCA+AGG 0.613701 7_3:-59556931 Msa1113330:intron
TGAAAGGCGAGTTCCCAGAA+AGG 0.615643 7_3:-59555420 Msa1113330:CDS
GCAGGAATCGTCCTCTCACG+TGG 0.617223 7_3:+59552070 None:intergenic
ACCTTGGTGAGAAGTTCCAT+AGG 0.618037 7_3:+59552273 None:intergenic
CATCATATATGCCCAGTCCA+AGG 0.618778 7_3:-59553057 Msa1113330:CDS
TGATGATGACATTGATGATG+AGG 0.621578 7_3:-59550662 Msa1113330:CDS
GGCTTCAGCTAAAGGTGATG+CGG 0.624131 7_3:+59550816 None:intergenic
TATCAACTCACAGGACGCAA+AGG 0.625938 7_3:+59552016 None:intergenic
GCCAATTCTACATGAAGACG+GGG 0.633117 7_3:-59552129 Msa1113330:CDS
ACCTAGCAGACGCCGTCCTG+CGG 0.633483 7_3:+59550795 None:intergenic
GAGTGGTTTCAGTGCCTGGG+TGG 0.634998 7_3:-59552991 Msa1113330:CDS
AGTCGGGCTCAGTAAAGCCA+AGG 0.638264 7_3:-59550723 Msa1113330:CDS
ATTTGCTGGAAGATTCACAC+TGG 0.639436 7_3:+59550299 None:intergenic
CTACTGGAACAGAGCCAGAA+CGG 0.644056 7_3:+59552209 None:intergenic
TTGGTATTTCAGAGGCAATG+TGG 0.648210 7_3:-59556103 Msa1113330:intron
AGCAGGTCAGCAGTCATATG+CGG 0.648949 7_3:-59553104 Msa1113330:CDS
CTTTAGCTGAAGCCGCAGGA+CGG 0.650765 7_3:-59550807 Msa1113330:CDS
GGCACTGAAACCACTCCTTG+AGG 0.654184 7_3:+59552998 None:intergenic
GTAGATTTGGAGCAACATGT+CGG 0.656899 7_3:-59555983 Msa1113330:CDS
TCATCCTAAAGACAAGGCTG+GGG 0.657086 7_3:-59553609 Msa1113330:CDS
AATATGGTACTTCCAATGAG+AGG 0.663744 7_3:-59553163 Msa1113330:CDS
TTAAAGGTGCATAACTTGAG+GGG 0.664735 7_3:+59553026 None:intergenic
AGAGTGAGTTAACAAAACGT+GGG 0.665229 7_3:-59557032 Msa1113330:five_prime_UTR
TCAATGTCATCATCACCGGA+AGG 0.666162 7_3:+59550670 None:intergenic
GGGACTCAAAACACAATCAG+GGG 0.668670 7_3:+59552048 None:intergenic
GGTATTGAGAATATACCCCT+GGG 0.672817 7_3:+59552230 None:intergenic
GGACGCAAAGGAAGGCCAAG+GGG 0.673705 7_3:+59552028 None:intergenic
ACCTATGGAACTTCTCACCA+AGG 0.676965 7_3:-59552274 Msa1113330:CDS
ATGTTGCTCCAAATCTACAA+AGG 0.680968 7_3:+59555988 None:intergenic
GATGATGACATTGATGATGA+GGG 0.686486 7_3:-59550661 Msa1113330:CDS
TGAATACTAACAGGGCGGAG+TGG 0.687464 7_3:+59553551 None:intergenic
CATATATGCCCAGTCCAAGG+TGG 0.693060 7_3:-59553054 Msa1113330:CDS
GTTTCATCATCCTAAAGACA+AGG 0.693217 7_3:-59553615 Msa1113330:CDS
CGGGCTCAGTAAAGCCAAGG+AGG 0.694995 7_3:-59550720 Msa1113330:CDS
GAGTGAGTTAACAAAACGTG+GGG 0.698884 7_3:-59557031 Msa1113330:five_prime_UTR
CGTATTCCATTGATGCGATG+CGG 0.699906 7_3:+59556947 None:intergenic
ACATTGTATGTACTCCACCC+AGG 0.709130 7_3:+59552977 None:intergenic
AGAAAATGCAGGACTCCCAG+GGG 0.720163 7_3:-59552245 Msa1113330:CDS
AGGATGATGAAACCTGCATG+TGG 0.722276 7_3:+59553625 None:intergenic
TCTGTACATCTCCAGCAATG+GGG 0.726457 7_3:+59550556 None:intergenic
CCAATTCTACATGAAGACGG+GGG 0.734974 7_3:-59552128 Msa1113330:CDS
GTTTGTGAGTGTGACAGACA+GGG 0.735791 7_3:-59557002 Msa1113330:five_prime_UTR
TGTGAGTGTGACAGACAGGG+CGG 0.805451 7_3:-59556999 Msa1113330:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACAAACAAAAAAAAA+AGG + chr7_3:59550692-59550711 None:intergenic 10.0%
!!! TTTTTTTTTGTTTGTTTTTT+TGG - chr7_3:59550692-59550711 Msa1113330:CDS 10.0%
!! ACATGTTTAAAAAAATAATT+TGG + chr7_3:59551008-59551027 None:intergenic 10.0%
!! AAATTTATTATGAATGTATT+TGG - chr7_3:59551585-59551604 Msa1113330:intron 10.0%
!!! TCATTACAAATAAATTTTAT+AGG - chr7_3:59552607-59552626 Msa1113330:intron 10.0%
!!! TTTTATTAGGATTTTTTTTT+AGG + chr7_3:59553198-59553217 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTGCAA+AGG + chr7_3:59555684-59555703 None:intergenic 10.0%
!! TAAAATGTTAAAAAAAAAAG+AGG + chr7_3:59555997-59556016 None:intergenic 10.0%
!! ATATATAATAAATCAATGTT+TGG - chr7_3:59557155-59557174 Msa1113330:five_prime_UTR 10.0%
!!! TTTTGATTGTGATAATAAAA+AGG + chr7_3:59550323-59550342 None:intergenic 15.0%
!! ATGATTAAAAAAACTATTGT+TGG + chr7_3:59550951-59550970 None:intergenic 15.0%
!! AATATTCAAAGATGAAAAAA+TGG + chr7_3:59551083-59551102 None:intergenic 15.0%
!! GATATAACTATAAATTCAAA+GGG + chr7_3:59552265-59552284 None:intergenic 15.0%
!! ATATGTAAACTTATTATTAG+AGG - chr7_3:59552874-59552893 Msa1113330:intron 15.0%
!! ATAGAAATAAACATTCATAT+GGG + chr7_3:59553142-59553161 None:intergenic 15.0%
!! AATAGAAATAAACATTCATA+TGG + chr7_3:59553143-59553162 None:intergenic 15.0%
!! CAATTCAAATTTCTAATATA+AGG - chr7_3:59553169-59553188 Msa1113330:CDS 15.0%
!!! TAACATCATTATCTTTTATT+AGG + chr7_3:59553211-59553230 None:intergenic 15.0%
!! AGATATCAATATTTGTAATA+TGG + chr7_3:59553784-59553803 None:intergenic 15.0%
!! TAGACTATTAATTAAGATTA+AGG + chr7_3:59554179-59554198 None:intergenic 15.0%
!! TACTTCATTATAATTATCAT+AGG - chr7_3:59555548-59555567 Msa1113330:intron 15.0%
!! TAAAATTAATACTTCTATGT+TGG - chr7_3:59556106-59556125 Msa1113330:intron 15.0%
!!! AATAATAACACAGATATTTT+GGG + chr7_3:59556370-59556389 None:intergenic 15.0%
!!! AAATAATAACACAGATATTT+TGG + chr7_3:59556371-59556390 None:intergenic 15.0%
!!! GTTTTACAATTTTTTTCTTA+GGG - chr7_3:59556873-59556892 Msa1113330:intron 15.0%
!!! TTTTACAATTTTTTTCTTAG+GGG - chr7_3:59556874-59556893 Msa1113330:intron 15.0%
!!! ATCAATATCCTTAATTTTTT+TGG - chr7_3:59557284-59557303 Msa1113330:five_prime_UTR 15.0%
!! AAACAAAAAAAAAAGGTAGT+TGG + chr7_3:59550685-59550704 None:intergenic 20.0%
!!! TGAATTACTAGTTTGAAAAA+AGG + chr7_3:59550829-59550848 None:intergenic 20.0%
!! AAAATTAGCAGAAAATTGAA+AGG + chr7_3:59550861-59550880 None:intergenic 20.0%
!! GTTATAGATTTAACATTAGA+TGG + chr7_3:59551936-59551955 None:intergenic 20.0%
!! TGGACATAATTAGATAATAT+AGG - chr7_3:59551985-59552004 Msa1113330:intron 20.0%
!! TAAAATTCCATCTATGAAAT+AGG + chr7_3:59552174-59552193 None:intergenic 20.0%
!! GGATATAACTATAAATTCAA+AGG + chr7_3:59552266-59552285 None:intergenic 20.0%
!!! ATTTAGGAGTTATCTTTTAA+CGG + chr7_3:59552305-59552324 None:intergenic 20.0%
!! AAAGATAACTCCTAAATTAT+AGG - chr7_3:59552308-59552327 Msa1113330:CDS 20.0%
!! AAGATAACTCCTAAATTATA+GGG - chr7_3:59552309-59552328 Msa1113330:CDS 20.0%
!!! ATATTTGTTATTCCTAGATA+GGG + chr7_3:59552858-59552877 None:intergenic 20.0%
!! CAGAGATAATAATACAAAAA+TGG + chr7_3:59553409-59553428 None:intergenic 20.0%
!! GTAATTACATATAAACAAGA+GGG + chr7_3:59553960-59553979 None:intergenic 20.0%
!! TGTAATTACATATAAACAAG+AGG + chr7_3:59553961-59553980 None:intergenic 20.0%
!! ATGAGTAATGAAACAATAAT+TGG + chr7_3:59554015-59554034 None:intergenic 20.0%
!! TTATTGTTTCATTACTCATT+TGG - chr7_3:59554016-59554035 Msa1113330:intron 20.0%
!! CATAGTATAAAAAGTTCATA+CGG + chr7_3:59554060-59554079 None:intergenic 20.0%
!! TACATTAAATTAGAGGTTAA+AGG + chr7_3:59555015-59555034 None:intergenic 20.0%
!! ACCTCTAATTTAATGTAATA+TGG - chr7_3:59555018-59555037 Msa1113330:intron 20.0%
!! AATGGAATATTCATTATTCT+AGG - chr7_3:59555135-59555154 Msa1113330:intron 20.0%
!! ATGGAATATTCATTATTCTA+GGG - chr7_3:59555136-59555155 Msa1113330:intron 20.0%
!!! TTTAAATTTTGAGTTTGCTA+AGG - chr7_3:59555572-59555591 Msa1113330:intron 20.0%
!! AAATAACTGACAAAAGTAAA+GGG + chr7_3:59555708-59555727 None:intergenic 20.0%
!!! CGTTTTACAATTTTTTTCTT+AGG - chr7_3:59556872-59556891 Msa1113330:intron 20.0%
!! TCATAAATATTTGTCACATT+TGG - chr7_3:59557049-59557068 Msa1113330:five_prime_UTR 20.0%
!!! CAGAAAGATATTTTTTACAT+TGG + chr7_3:59557132-59557151 None:intergenic 20.0%
!! CAATGTAAAAAATATCTTTC+TGG - chr7_3:59557130-59557149 Msa1113330:five_prime_UTR 20.0%
!! AAGATTGTCCAAAAAAATTA+AGG + chr7_3:59557295-59557314 None:intergenic 20.0%
! TTATTCTTTGTTCTCATTTG+TGG - chr7_3:59550229-59550248 Msa1113330:three_prime_UTR 25.0%
!! TATAATTGTGTTTTCTCTCT+TGG - chr7_3:59550371-59550390 Msa1113330:three_prime_UTR 25.0%
! CAAAATCAAGTAAAAACATG+AGG + chr7_3:59550759-59550778 None:intergenic 25.0%
! TTGGTTTATCATGAAATCAA+CGG + chr7_3:59550989-59551008 None:intergenic 25.0%
! ATGGTTATGTATCTGAAAAA+TGG + chr7_3:59551259-59551278 None:intergenic 25.0%
! CTTATGTAATATGAACAATC+TGG + chr7_3:59551465-59551484 None:intergenic 25.0%
! TGTTCATATTACATAAGAAC+CGG - chr7_3:59551468-59551487 Msa1113330:intron 25.0%
! CTTGGAAATTAGTGATAATA+AGG + chr7_3:59551669-59551688 None:intergenic 25.0%
! CTTATTATCACTAATTTCCA+AGG - chr7_3:59551667-59551686 Msa1113330:intron 25.0%
!!! ATAGAAAAGTATCAACAAGA+CGG + chr7_3:59551960-59551979 None:intergenic 25.0%
!! TTGATACTTTTCTATTTGAC+TGG - chr7_3:59551965-59551984 Msa1113330:intron 25.0%
!! GTTTTACTTCAAATATTGTC+AGG - chr7_3:59552018-59552037 Msa1113330:intron 25.0%
!! TTTAGGAGTTATCTTTTAAC+GGG + chr7_3:59552304-59552323 None:intergenic 25.0%
! AACTCATTAGATGAACTATA+AGG + chr7_3:59552462-59552481 None:intergenic 25.0%
!!! TATTTGTTATTCCTAGATAG+GGG + chr7_3:59552857-59552876 None:intergenic 25.0%
!!! CATATTTGTTATTCCTAGAT+AGG + chr7_3:59552859-59552878 None:intergenic 25.0%
! TAGTAAAGTTATACAGCATT+TGG + chr7_3:59552947-59552966 None:intergenic 25.0%
! TTGTCGAAATTGTCTATATA+TGG + chr7_3:59553005-59553024 None:intergenic 25.0%
! ATATAGACAATTTCGACAAA+TGG - chr7_3:59553006-59553025 Msa1113330:CDS 25.0%
! TTTGTTTGAAAGTAGTGTAT+TGG - chr7_3:59553453-59553472 Msa1113330:intron 25.0%
! TTGTTTGAAAGTAGTGTATT+GGG - chr7_3:59553454-59553473 Msa1113330:intron 25.0%
!!! TTTTTAAGTAATTAGCACAC+TGG + chr7_3:59553621-59553640 None:intergenic 25.0%
! AATAGATCTTAAGAGAAACA+TGG + chr7_3:59553651-59553670 None:intergenic 25.0%
! TTAGTTGCATGAAATATCTA+TGG - chr7_3:59553679-59553698 Msa1113330:intron 25.0%
!! GGAAATTTTGAATACTAACA+GGG + chr7_3:59553939-59553958 None:intergenic 25.0%
!!! CTCTGTTTTTCTAAAATTTG+TGG - chr7_3:59554105-59554124 Msa1113330:intron 25.0%
!! GTAATAAATAGAAGCATACA+AGG + chr7_3:59554131-59554150 None:intergenic 25.0%
! TGTGCTTATTATTTAAGAAC+TGG - chr7_3:59554244-59554263 Msa1113330:intron 25.0%
! GCCATATTACATTAAATTAG+AGG + chr7_3:59555022-59555041 None:intergenic 25.0%
! ATGCTAATACATTACAGTAT+TGG + chr7_3:59555077-59555096 None:intergenic 25.0%
! TGTAATGTATTAGCATCTAA+TGG - chr7_3:59555081-59555100 Msa1113330:intron 25.0%
! CAAATAACTGACAAAAGTAA+AGG + chr7_3:59555709-59555728 None:intergenic 25.0%
! ATATCTCTACTAAAATCGTA+GGG + chr7_3:59555767-59555786 None:intergenic 25.0%
! TATATCTCTACTAAAATCGT+AGG + chr7_3:59555768-59555787 None:intergenic 25.0%
! AAGATTGATTATAACTTCTC+TGG - chr7_3:59555920-59555939 Msa1113330:intron 25.0%
!! ATTGTATGATGATAACTTGT+TGG - chr7_3:59555971-59555990 Msa1113330:CDS 25.0%
! AGTAAACATTGACCTTTAAT+TGG - chr7_3:59556415-59556434 Msa1113330:intron 25.0%
! GTAAACATTGACCTTTAATT+GGG - chr7_3:59556416-59556435 Msa1113330:intron 25.0%
!! GAGTATTTTCAATAGTAGAT+TGG + chr7_3:59557108-59557127 None:intergenic 25.0%
!! TTTTCTTTAACGAAACAGTT+GGG - chr7_3:59557205-59557224 Msa1113330:five_prime_UTR 25.0%
!!! TGTATAGAAATTTGTTGCAA+TGG - chr7_3:59557246-59557265 Msa1113330:five_prime_UTR 25.0%
! CACAATAATCAATACTTCAT+TGG + chr7_3:59557337-59557356 None:intergenic 25.0%
ATAGATAGATAGATGAGATG+AGG - chr7_3:59550191-59550210 Msa1113330:three_prime_UTR 30.0%
AAAAGAGAAGAAAACCTTGA+GGG + chr7_3:59550565-59550584 None:intergenic 30.0%
AAGAATTAAGCGATGATGAT+CGG + chr7_3:59550593-59550612 None:intergenic 30.0%
TCTTCACAGATACACAAAAA+AGG + chr7_3:59551112-59551131 None:intergenic 30.0%
!! CTTTTGAAAAGTCGTACAAA+GGG - chr7_3:59551160-59551179 Msa1113330:intron 30.0%
!! TTTTGAAAAGTCGTACAAAG+GGG - chr7_3:59551161-59551180 Msa1113330:intron 30.0%
!!! TTAACTTTTTCATCACACAG+TGG - chr7_3:59551184-59551203 Msa1113330:intron 30.0%
!!! TAACTTTTTCATCACACAGT+GGG - chr7_3:59551185-59551204 Msa1113330:intron 30.0%
!!! AAATTGACTTGTACGTGTTT+TGG - chr7_3:59551357-59551376 Msa1113330:intron 30.0%
TACGAACTATGCATTTCATA+TGG - chr7_3:59551547-59551566 Msa1113330:intron 30.0%
CAGTTGAAACTGAAACTATT+TGG - chr7_3:59551706-59551725 Msa1113330:intron 30.0%
GAAAGCAGTGAAAAGAAATT+TGG + chr7_3:59551883-59551902 None:intergenic 30.0%
GTGAATTCCTATTTCATAGA+TGG - chr7_3:59552164-59552183 Msa1113330:CDS 30.0%
!! CATGAAATCTTTAGAACACT+TGG - chr7_3:59552213-59552232 Msa1113330:CDS 30.0%
!! AATCTTTAGAACACTTGGAA+TGG - chr7_3:59552218-59552237 Msa1113330:CDS 30.0%
!! ATCTTTAGAACACTTGGAAT+GGG - chr7_3:59552219-59552238 Msa1113330:CDS 30.0%
GTCTTGTATCCCTATAATTT+AGG + chr7_3:59552321-59552340 None:intergenic 30.0%
TATGGGATAAAGTGTAACTA+TGG + chr7_3:59552508-59552527 None:intergenic 30.0%
ACACTTTATCCCATATAAGA+TGG - chr7_3:59552513-59552532 Msa1113330:intron 30.0%
TAGATGTTGAATGACTAGAT+TGG - chr7_3:59552557-59552576 Msa1113330:intron 30.0%
AATGATTGAGTTTCATTGCA+CGG + chr7_3:59552592-59552611 None:intergenic 30.0%
!! AAAAGCAGAGTTTCAAGTTA+TGG + chr7_3:59552701-59552720 None:intergenic 30.0%
ATCTTTCAAACTGAAGACTT+GGG + chr7_3:59552779-59552798 None:intergenic 30.0%
TATCTTTCAAACTGAAGACT+TGG + chr7_3:59552780-59552799 None:intergenic 30.0%
ATTTGGTATAGTACGTACTA+AGG + chr7_3:59552930-59552949 None:intergenic 30.0%
! AATTTTTGCAAACTGTGCAT+TGG - chr7_3:59552966-59552985 Msa1113330:intron 30.0%
! ATTTTTGCAAACTGTGCATT+GGG - chr7_3:59552967-59552986 Msa1113330:intron 30.0%
CTATGTGCGATAATTAGATT+TGG - chr7_3:59553248-59553267 Msa1113330:CDS 30.0%
AAAGGATGTCTTCCTTATAT+TGG + chr7_3:59553285-59553304 None:intergenic 30.0%
!! ACATCCTTTGTCTTTAAGAT+TGG - chr7_3:59553296-59553315 Msa1113330:intron 30.0%
GGTTTAAACACTTTGATGAA+TGG - chr7_3:59553321-59553340 Msa1113330:intron 30.0%
TGTTTGAAAGTAGTGTATTG+GGG - chr7_3:59553455-59553474 Msa1113330:intron 30.0%
!! GGTTTTCTTTTGTTTCACAT+AGG + chr7_3:59553578-59553597 None:intergenic 30.0%
AAACCAGTTTAACAATTCAC+TGG - chr7_3:59553593-59553612 Msa1113330:CDS 30.0%
ATACTAGGGCTTAACATTAT+AGG + chr7_3:59553715-59553734 None:intergenic 30.0%
CAATGACTAAAGCAATACTA+GGG + chr7_3:59553729-59553748 None:intergenic 30.0%
ACAATGACTAAAGCAATACT+AGG + chr7_3:59553730-59553749 None:intergenic 30.0%
TTACAGTACTATCTGAAAAC+AGG - chr7_3:59553814-59553833 Msa1113330:intron 30.0%
AAAACAGGAACTTGCAAATT+TGG - chr7_3:59553829-59553848 Msa1113330:intron 30.0%
! AATTTTGAATACTAACAGGG+CGG + chr7_3:59553936-59553955 None:intergenic 30.0%
! GGGAAATTTTGAATACTAAC+AGG + chr7_3:59553940-59553959 None:intergenic 30.0%
! ACTCATTTGGTTTCATTCAA+TGG - chr7_3:59554029-59554048 Msa1113330:intron 30.0%
! CTTACACCTGAATGTTTTAT+GGG - chr7_3:59554151-59554170 Msa1113330:intron 30.0%
!! ATTGGAAGTACCATATTACT+TGG + chr7_3:59554313-59554332 None:intergenic 30.0%
! ATTAAAGGTGCATAACTTGA+GGG + chr7_3:59554457-59554476 None:intergenic 30.0%
! AATTAAAGGTGCATAACTTG+AGG + chr7_3:59554458-59554477 None:intergenic 30.0%
! TTGTGTTTTCACATAGCTTA+AGG - chr7_3:59554660-59554679 Msa1113330:intron 30.0%
! TTTCACATAGCTTAAGGTTT+TGG - chr7_3:59554666-59554685 Msa1113330:intron 30.0%
! ACAACACACAAGTGTATTTT+TGG + chr7_3:59554737-59554756 None:intergenic 30.0%
!! TTCATTATTCTAGGGTCAAA+TGG - chr7_3:59555144-59555163 Msa1113330:intron 30.0%
!! TCATTATTCTAGGGTCAAAT+GGG - chr7_3:59555145-59555164 Msa1113330:intron 30.0%
! TCATTTCTCATTGTTTGTTG+TGG + chr7_3:59555181-59555200 None:intergenic 30.0%
ATGAGAAATGATCAAACCTA+TGG - chr7_3:59555190-59555209 Msa1113330:intron 30.0%
ATAACAAGATATCAACTCAC+AGG + chr7_3:59555475-59555494 None:intergenic 30.0%
!! GTGAGTTGATATCTTGTTAT+CGG - chr7_3:59555475-59555494 Msa1113330:intron 30.0%
! AGTCTTCTTAATTTTGCTTG+TGG - chr7_3:59555610-59555629 Msa1113330:intron 30.0%
ATATACCCAACACAATTGTT+GGG - chr7_3:59555783-59555802 Msa1113330:intron 30.0%
!! TATCACTGTTTCTAAATGCT+AGG - chr7_3:59556015-59556034 Msa1113330:CDS 30.0%
CGAGTTACTAACAGTAATAA+CGG - chr7_3:59556081-59556100 Msa1113330:CDS 30.0%
TCTAAACAAATTGTGATCTG+TGG - chr7_3:59556316-59556335 Msa1113330:intron 30.0%
!!! TGTTCTCATCACATTGATTT+TGG - chr7_3:59556506-59556525 Msa1113330:intron 30.0%
!! ATTTTGGTACAATCTGATAG+AGG - chr7_3:59556522-59556541 Msa1113330:intron 30.0%
GCATTAAGTTTATCATCAGA+AGG - chr7_3:59556725-59556744 Msa1113330:intron 30.0%
ATAATGTTGTCTCTTGGAAA+TGG - chr7_3:59556841-59556860 Msa1113330:intron 30.0%
TAATGTTGTCTCTTGGAAAT+GGG - chr7_3:59556842-59556861 Msa1113330:intron 30.0%
!! ATTTTGACATGAACTCTGTT+TGG + chr7_3:59556952-59556971 None:intergenic 30.0%
AACTGAAGAAATGTTCACAT+TGG + chr7_3:59557082-59557101 None:intergenic 30.0%
CAACTGTTTCGTTAAAGAAA+AGG + chr7_3:59557206-59557225 None:intergenic 30.0%
! CTTTTCTTTAACGAAACAGT+TGG - chr7_3:59557204-59557223 Msa1113330:five_prime_UTR 30.0%
AAGGATATTGATCCTAATGT+TGG + chr7_3:59557276-59557295 None:intergenic 30.0%
ATAGATAGATGAGATGAGGT+TGG - chr7_3:59550195-59550214 Msa1113330:three_prime_UTR 35.0%
TTCTTTGTTCTCATTTGTGG+AGG - chr7_3:59550232-59550251 Msa1113330:three_prime_UTR 35.0%
AGAAAAAGAGAAAGAGAGAG+AGG + chr7_3:59550273-59550292 None:intergenic 35.0%
TTTCTCTCTTGGTTGAATTG+AGG - chr7_3:59550382-59550401 Msa1113330:three_prime_UTR 35.0%
TTCTCTCTTGGTTGAATTGA+GGG - chr7_3:59550383-59550402 Msa1113330:three_prime_UTR 35.0%
AAGAGTGAGTTAACAAAACG+TGG - chr7_3:59550446-59550465 Msa1113330:three_prime_UTR 35.0%
AGAGTGAGTTAACAAAACGT+GGG - chr7_3:59550447-59550466 Msa1113330:three_prime_UTR 35.0%
GAAAAGAGAAGAAAACCTTG+AGG + chr7_3:59550566-59550585 None:intergenic 35.0%
CATTTACCAACAGAAACACA+TGG + chr7_3:59550731-59550750 None:intergenic 35.0%
CTTTCTAACATATGCATGCA+TGG - chr7_3:59550892-59550911 Msa1113330:CDS 35.0%
TTTCAAAAGCTGTAGTGTCA+TGG + chr7_3:59551149-59551168 None:intergenic 35.0%
!! GCTTTTGAAAAGTCGTACAA+AGG - chr7_3:59551159-59551178 Msa1113330:intron 35.0%
!!! AACTTTTTCATCACACAGTG+GGG - chr7_3:59551186-59551205 Msa1113330:intron 35.0%
GATCAATTTCACTTTCACAC+TGG + chr7_3:59551299-59551318 None:intergenic 35.0%
!!! TACGTGTTTTGGTATTTCAG+AGG - chr7_3:59551368-59551387 Msa1113330:intron 35.0%
ATGTTGCTCCAAATCTACAA+AGG + chr7_3:59551494-59551513 None:intergenic 35.0%
TGTTGAAAGAAGAACAGCAA+GGG + chr7_3:59551744-59551763 None:intergenic 35.0%
TTGTTGAAAGAAGAACAGCA+AGG + chr7_3:59551745-59551764 None:intergenic 35.0%
TTCAACAAGTGATCTTTGCT+TGG - chr7_3:59551757-59551776 Msa1113330:intron 35.0%
TGTTTCTCAATGACTGCATA+AGG - chr7_3:59552112-59552131 Msa1113330:CDS 35.0%
AACGGGATTTGAATTGTTAC+TGG + chr7_3:59552287-59552306 None:intergenic 35.0%
AATTATAGGGATACAAGACG+AGG - chr7_3:59552322-59552341 Msa1113330:CDS 35.0%
AGCTGATTGCCATCTTATAT+GGG + chr7_3:59552525-59552544 None:intergenic 35.0%
AAGCTGATTGCCATCTTATA+TGG + chr7_3:59552526-59552545 None:intergenic 35.0%
! ACAGTATTTTGTTGGGATTG+AGG + chr7_3:59552750-59552769 None:intergenic 35.0%
TCCCAACAAAATACTGTAGT+TGG - chr7_3:59552753-59552772 Msa1113330:intron 35.0%
! GCCAACTACAGTATTTTGTT+GGG + chr7_3:59552757-59552776 None:intergenic 35.0%
GCTACAAGAAACAATCAAGA+AGG + chr7_3:59552826-59552845 None:intergenic 35.0%
TAGACAATTTCGACAAATGG+CGG - chr7_3:59553009-59553028 Msa1113330:CDS 35.0%
!! AGAAAGTATTCCCATGATCA+AGG - chr7_3:59553046-59553065 Msa1113330:CDS 35.0%
TCTTCCTTATATTGGACATG+AGG + chr7_3:59553277-59553296 None:intergenic 35.0%
CCTTCCAATCTTAAAGACAA+AGG + chr7_3:59553303-59553322 None:intergenic 35.0%
!! CCTTTGTCTTTAAGATTGGA+AGG - chr7_3:59553300-59553319 Msa1113330:intron 35.0%
AACACTTTGATGAATGGAGA+TGG - chr7_3:59553327-59553346 Msa1113330:intron 35.0%
ACACTTTGATGAATGGAGAT+GGG - chr7_3:59553328-59553347 Msa1113330:intron 35.0%
TATTATTATCTCTGCCTCTC+TGG - chr7_3:59553415-59553434 Msa1113330:intron 35.0%
CAAAATAAGTCATTCCAGAG+AGG + chr7_3:59553432-59553451 None:intergenic 35.0%
GAACCAGTGAATTGTTAAAC+TGG + chr7_3:59553599-59553618 None:intergenic 35.0%
GTTTCATCATCCTAAAGACA+AGG - chr7_3:59553864-59553883 Msa1113330:intron 35.0%
TGGATAGCCTAAAATGTTCA+GGG + chr7_3:59553911-59553930 None:intergenic 35.0%
! TCGATGAACGTTTACTGATT+TGG + chr7_3:59553985-59554004 None:intergenic 35.0%
!! AGTAAACGTTCATCGATTTG+TGG - chr7_3:59553989-59554008 Msa1113330:intron 35.0%
CCATAAAACATTCAGGTGTA+AGG + chr7_3:59554153-59554172 None:intergenic 35.0%
! CCTTACACCTGAATGTTTTA+TGG - chr7_3:59554150-59554169 Msa1113330:intron 35.0%
AAGGATCCCATAAAACATTC+AGG + chr7_3:59554160-59554179 None:intergenic 35.0%
AGAACTGGTCAATGCAAATT+TGG - chr7_3:59554259-59554278 Msa1113330:intron 35.0%
GAACTGGTCAATGCAAATTT+GGG - chr7_3:59554260-59554279 Msa1113330:intron 35.0%
AGTACCATATTACTTGGTTG+AGG + chr7_3:59554307-59554326 None:intergenic 35.0%
AATATGGTACTTCCAATGAG+AGG - chr7_3:59554316-59554335 Msa1113330:intron 35.0%
! TTAAAGGTGCATAACTTGAG+GGG + chr7_3:59554456-59554475 None:intergenic 35.0%
ACTCCTTGAGGTAGAATTAA+AGG + chr7_3:59554472-59554491 None:intergenic 35.0%
TTTAATTCTACCTCAAGGAG+TGG - chr7_3:59554471-59554490 Msa1113330:intron 35.0%
! AGATCATCCAATCTTTTCGT+AGG - chr7_3:59554526-59554545 Msa1113330:intron 35.0%
! ATCCAATCTTTTCGTAGGAT+AGG - chr7_3:59554531-59554550 Msa1113330:intron 35.0%
AACCTATCCTACGAAAAGAT+TGG + chr7_3:59554536-59554555 None:intergenic 35.0%
CGTAGGATAGGTTATAACAA+AGG - chr7_3:59554543-59554562 Msa1113330:intron 35.0%
AACAAAGGAATAGAAAGACG+TGG - chr7_3:59554558-59554577 Msa1113330:intron 35.0%
!! GCTTAAGGTTTTGGTATAGT+TGG - chr7_3:59554675-59554694 Msa1113330:intron 35.0%
!! GCTTGAACTTTTTGAAGAGT+TGG - chr7_3:59554817-59554836 Msa1113330:intron 35.0%
AACACCATGGTTAAGTTAGT+TGG - chr7_3:59554845-59554864 Msa1113330:intron 35.0%
ACACCATGGTTAAGTTAGTT+GGG - chr7_3:59554846-59554865 Msa1113330:intron 35.0%
GAAATAGACCTTTATGGACA+AGG + chr7_3:59554899-59554918 None:intergenic 35.0%
CCAGAAGAAATAGACCTTTA+TGG + chr7_3:59554905-59554924 None:intergenic 35.0%
! CCATAAAGGTCTATTTCTTC+TGG - chr7_3:59554902-59554921 Msa1113330:intron 35.0%
!! GCGTTTTTCAGAGAATAACT+TGG - chr7_3:59554962-59554981 Msa1113330:intron 35.0%
TTGGCATCATCTGTATGATA+TGG - chr7_3:59554981-59555000 Msa1113330:intron 35.0%
GTATATTCTCAATACCGTTC+TGG - chr7_3:59555256-59555275 Msa1113330:intron 35.0%
TAGGATTCTATGCTTTGCAA+AGG - chr7_3:59555290-59555309 Msa1113330:intron 35.0%
AGGATTCTATGCTTTGCAAA+GGG - chr7_3:59555291-59555310 Msa1113330:intron 35.0%
TTCATGTAGAATTGGCATTC+AGG + chr7_3:59555346-59555365 None:intergenic 35.0%
ATGCCAATTCTACATGAAGA+CGG - chr7_3:59555348-59555367 Msa1113330:intron 35.0%
!!! TATCCTTTGAGTTTTAGCTC+TGG - chr7_3:59555735-59555754 Msa1113330:intron 35.0%
GATATACCCAACACAATTGT+TGG - chr7_3:59555782-59555801 Msa1113330:intron 35.0%
GATGACCCATATTGAGTATA+GGG + chr7_3:59555837-59555856 None:intergenic 35.0%
AGATGACCCATATTGAGTAT+AGG + chr7_3:59555838-59555857 None:intergenic 35.0%
CAATATGGGTCATCTGATTT+AGG - chr7_3:59555843-59555862 Msa1113330:intron 35.0%
!!! CTTGTTGTGTTGATAGCTTT+TGG + chr7_3:59556054-59556073 None:intergenic 35.0%
TTCCCACTTAAGATGTTACA+TGG - chr7_3:59556140-59556159 Msa1113330:intron 35.0%
TCCCACTTAAGATGTTACAT+GGG - chr7_3:59556141-59556160 Msa1113330:intron 35.0%
TCCCATGTAACATCTTAAGT+GGG + chr7_3:59556145-59556164 None:intergenic 35.0%
TTCCCATGTAACATCTTAAG+TGG + chr7_3:59556146-59556165 None:intergenic 35.0%
TAAGATGTTACATGGGAAAC+AGG - chr7_3:59556148-59556167 Msa1113330:intron 35.0%
AAGATGTTACATGGGAAACA+GGG - chr7_3:59556149-59556168 Msa1113330:intron 35.0%
ATATTAGTTACTCCCTTTGC+TGG + chr7_3:59556199-59556218 None:intergenic 35.0%
AATATCCCATGGTCTCATAT+TGG - chr7_3:59556214-59556233 Msa1113330:intron 35.0%
ATACAAGCTACTATTTCCCT+CGG + chr7_3:59556281-59556300 None:intergenic 35.0%
TATTCGCTTCACCCAATTAA+AGG + chr7_3:59556430-59556449 None:intergenic 35.0%
CACTTTGTGTATTCTATTCG+CGG - chr7_3:59556570-59556589 Msa1113330:intron 35.0%
TTATAGGTGAAGATTCCCAT+TGG + chr7_3:59556638-59556657 None:intergenic 35.0%
ATCATCAATGTCATCATCAC+CGG + chr7_3:59556816-59556835 None:intergenic 35.0%
!! TGATGATGACATTGATGATG+AGG - chr7_3:59556817-59556836 Msa1113330:intron 35.0%
!! GATGATGACATTGATGATGA+GGG - chr7_3:59556818-59556837 Msa1113330:intron 35.0%
AACCTACTATTGAATGCAGT+TGG - chr7_3:59556981-59557000 Msa1113330:five_prime_UTR 35.0%
CGTTAAAGAAAAGGATTTGC+TGG + chr7_3:59557197-59557216 None:intergenic 35.0%
! ATAGATGAGATGAGGTTGGT+TGG - chr7_3:59550199-59550218 Msa1113330:three_prime_UTR 40.0%
GAGTGAGTTAACAAAACGTG+GGG - chr7_3:59550448-59550467 Msa1113330:three_prime_UTR 40.0%
!! AGTTGGTTTGAAGAGAGTGA+CGG + chr7_3:59550668-59550687 None:intergenic 40.0%
! GGCATTGTGGGTTTAACTTA+TGG + chr7_3:59551278-59551297 None:intergenic 40.0%
TTGGTATTTCAGAGGCAATG+TGG - chr7_3:59551376-59551395 Msa1113330:intron 40.0%
CCTGATTCCATTGTTTCACT+TGG + chr7_3:59551417-59551436 None:intergenic 40.0%
CCAAGTGAAACAATGGAATC+AGG - chr7_3:59551414-59551433 Msa1113330:intron 40.0%
!! TATGAACAATCTGGTTCTCC+AGG + chr7_3:59551456-59551475 None:intergenic 40.0%
! GTAGATTTGGAGCAACATGT+CGG - chr7_3:59551496-59551515 Msa1113330:intron 40.0%
GGTTTAATCATCCTCCTAAC+AGG - chr7_3:59551517-59551536 Msa1113330:intron 40.0%
ATCACTAATTTCCAAGGTGC+TGG - chr7_3:59551673-59551692 Msa1113330:intron 40.0%
TTGAAAGAAGAACAGCAAGG+GGG + chr7_3:59551742-59551761 None:intergenic 40.0%
GTTGAAAGAAGAACAGCAAG+GGG + chr7_3:59551743-59551762 None:intergenic 40.0%
AATTACCTGCACACATGTTC+AGG - chr7_3:59551794-59551813 Msa1113330:intron 40.0%
CCAAATCTCTTCAAGCACAT+AGG + chr7_3:59552431-59552450 None:intergenic 40.0%
CCTATGTGCTTGAAGAGATT+TGG - chr7_3:59552428-59552447 Msa1113330:intron 40.0%
! GGCCAACTACAGTATTTTGT+TGG + chr7_3:59552758-59552777 None:intergenic 40.0%
AGCAATGATAACCCCTATCT+AGG - chr7_3:59552843-59552862 Msa1113330:intron 40.0%
AATTTCGACAAATGGCGGTT+TGG - chr7_3:59553014-59553033 Msa1113330:CDS 40.0%
!! TCAAAGCCTCATTTTAACCC+CGG + chr7_3:59553072-59553091 None:intergenic 40.0%
GAGTCCTCATGTCCAATATA+AGG - chr7_3:59553270-59553289 Msa1113330:intron 40.0%
! AATCCTATTTGAGGCATGTC+AGG + chr7_3:59553538-59553557 None:intergenic 40.0%
ACTGGAGGTAATCCTATTTG+AGG + chr7_3:59553547-59553566 None:intergenic 40.0%
AATAGGATTACCTCCAGTAG+AGG - chr7_3:59553549-59553568 Msa1113330:intron 40.0%
ATAGGATTACCTCCAGTAGA+GGG - chr7_3:59553550-59553569 Msa1113330:intron 40.0%
ATCATCCTAAAGACAAGGCT+GGG - chr7_3:59553869-59553888 Msa1113330:intron 40.0%
! AGAGTTGCCCTGAACATTTT+AGG - chr7_3:59553901-59553920 Msa1113330:intron 40.0%
GTGGATAGCCTAAAATGTTC+AGG + chr7_3:59553912-59553931 None:intergenic 40.0%
CCATATTACTTGGTTGAGGA+TGG + chr7_3:59554303-59554322 None:intergenic 40.0%
CCATCCTCAACCAAGTAATA+TGG - chr7_3:59554300-59554319 Msa1113330:intron 40.0%
TAAACAGGAGAACCTCTCAT+TGG + chr7_3:59554331-59554350 None:intergenic 40.0%
ATGCGGCAGGAATTACAAAT+TGG - chr7_3:59554392-59554411 Msa1113330:intron 40.0%
GCACCTTTAATTCTACCTCA+AGG - chr7_3:59554466-59554485 Msa1113330:intron 40.0%
TATGACACACTCTTGAAGTG+TGG + chr7_3:59554611-59554630 None:intergenic 40.0%
GGTATAGTTGGTTAGTGACA+TGG - chr7_3:59554687-59554706 Msa1113330:intron 40.0%
! AGAGTTGGTTCATAACACCA+TGG - chr7_3:59554832-59554851 Msa1113330:intron 40.0%
! CTGCATTTTCTAGATCACCT+TGG + chr7_3:59555225-59555244 None:intergenic 40.0%
CAAGGTGATCTAGAAAATGC+AGG - chr7_3:59555223-59555242 Msa1113330:intron 40.0%
! GGTATTGAGAATATACCCCT+GGG + chr7_3:59555252-59555271 None:intergenic 40.0%
TGCAAAGCATAGAATCCTAC+TGG + chr7_3:59555289-59555308 None:intergenic 40.0%
TGCCAATTCTACATGAAGAC+GGG - chr7_3:59555349-59555368 Msa1113330:intron 40.0%
!! AGAAGACTCGTTCTTTTTCG+AGG + chr7_3:59555598-59555617 None:intergenic 40.0%
TGTCCAGAGCTAAAACTCAA+AGG + chr7_3:59555741-59555760 None:intergenic 40.0%
!!! TTTGAGTTTTAGCTCTGGAC+AGG - chr7_3:59555740-59555759 Msa1113330:intron 40.0%
CAAAGCCCAACAATTGTGTT+GGG + chr7_3:59555791-59555810 None:intergenic 40.0%
ACAAAGCCCAACAATTGTGT+TGG + chr7_3:59555792-59555811 None:intergenic 40.0%
TTGGGACCCTATACTCAATA+TGG - chr7_3:59555828-59555847 Msa1113330:intron 40.0%
TGGGACCCTATACTCAATAT+GGG - chr7_3:59555829-59555848 Msa1113330:intron 40.0%
! AGCGTCGAGTTCATAATTTC+TGG + chr7_3:59555888-59555907 None:intergenic 40.0%
AGAAATTATGAACTCGACGC+TGG - chr7_3:59555887-59555906 Msa1113330:intron 40.0%
TTACATGGGAAACAGGGTAA+CGG - chr7_3:59556155-59556174 Msa1113330:intron 40.0%
TTGCTGGTCGTGATTACTTA+GGG + chr7_3:59556183-59556202 None:intergenic 40.0%
TTTGCTGGTCGTGATTACTT+AGG + chr7_3:59556184-59556203 None:intergenic 40.0%
TAAGTAATCACGACCAGCAA+AGG - chr7_3:59556183-59556202 Msa1113330:intron 40.0%
AAGTAATCACGACCAGCAAA+GGG - chr7_3:59556184-59556203 Msa1113330:intron 40.0%
AGGGAGTAACTAATATCCCA+TGG - chr7_3:59556203-59556222 Msa1113330:intron 40.0%
TCTCTCCAATATGAGACCAT+GGG + chr7_3:59556222-59556241 None:intergenic 40.0%
AAAAAGAGCAGAGGCAGTAT+GGG - chr7_3:59556244-59556263 Msa1113330:intron 40.0%
! AGGTAATCCCATTTTCTGCA+GGG - chr7_3:59556542-59556561 Msa1113330:intron 40.0%
CGCGAATAGAATACACAAAG+TGG + chr7_3:59556572-59556591 None:intergenic 40.0%
TGTGTATTCTATTCGCGGTA+TGG - chr7_3:59556575-59556594 Msa1113330:intron 40.0%
CGGTATGGCATATGCAAATT+TGG - chr7_3:59556590-59556609 Msa1113330:intron 40.0%
TGCAAGTTTGACCATCCAAT+GGG - chr7_3:59556620-59556639 Msa1113330:intron 40.0%
AGGTGATGCGGATACATTAT+AGG + chr7_3:59556654-59556673 None:intergenic 40.0%
!! ATCAGAAGGACTTGTTGAGT+CGG - chr7_3:59556739-59556758 Msa1113330:intron 40.0%
! TCTGATAATGAAAGCCTCCT+TGG + chr7_3:59556776-59556795 None:intergenic 40.0%
TGAGGGATAATGTTGTCTCT+TGG - chr7_3:59556835-59556854 Msa1113330:intron 40.0%
! TGAATTGATTTCCCCATTGC+TGG - chr7_3:59556912-59556931 Msa1113330:intron 40.0%
TGCCAACTGCATTCAATAGT+AGG + chr7_3:59556986-59557005 None:intergenic 40.0%
! ATTTGCTGGAAGATTCACAC+TGG + chr7_3:59557183-59557202 None:intergenic 40.0%
! ATGAGATGAGGTTGGTTGGT+TGG - chr7_3:59550203-59550222 Msa1113330:three_prime_UTR 45.0%
TCTCTTGGTTGAATTGAGGG+TGG - chr7_3:59550386-59550405 Msa1113330:three_prime_UTR 45.0%
AGTTTGTGAGTGTGACAGAC+AGG - chr7_3:59550476-59550495 Msa1113330:three_prime_UTR 45.0%
GTTTGTGAGTGTGACAGACA+GGG - chr7_3:59550477-59550496 Msa1113330:three_prime_UTR 45.0%
TATATGCCGCATCGCATCAA+TGG - chr7_3:59550526-59550545 Msa1113330:three_prime_UTR 45.0%
CGTATTCCATTGATGCGATG+CGG + chr7_3:59550535-59550554 None:intergenic 45.0%
GAGAAGAAAACCTTGAGGGA+TGG + chr7_3:59550561-59550580 None:intergenic 45.0%
! GCAGTTCCATGTGTTTCTGT+TGG - chr7_3:59550722-59550741 Msa1113330:CDS 45.0%
AAGTTCCAAGTCACAGACAC+TGG + chr7_3:59551227-59551246 None:intergenic 45.0%
CACTTTCACACTGGCATTGT+GGG + chr7_3:59551290-59551309 None:intergenic 45.0%
TCACTTTCACACTGGCATTG+TGG + chr7_3:59551291-59551310 None:intergenic 45.0%
CAATGTGGCAAATGAGCTTG+AGG - chr7_3:59551391-59551410 Msa1113330:intron 45.0%
CTTGAGGCCAAGTGAAACAA+TGG - chr7_3:59551407-59551426 Msa1113330:intron 45.0%
AATGGAATCAGGACCGTATC+CGG - chr7_3:59551425-59551444 Msa1113330:intron 45.0%
AGAACCGGCCTTTGTAGATT+TGG - chr7_3:59551483-59551502 Msa1113330:intron 45.0%
TGCTCCAAATCTACAAAGGC+CGG + chr7_3:59551490-59551509 None:intergenic 45.0%
CAAGTACATGCCTGACATTC+TGG + chr7_3:59552094-59552113 None:intergenic 45.0%
GGGCTGAGAGATTTCTTCTT+AGG - chr7_3:59552239-59552258 Msa1113330:CDS 45.0%
! ACAAATGGCGGTTTGGCAAA+AGG - chr7_3:59553021-59553040 Msa1113330:CDS 45.0%
AGTATTCCCATGATCAAGGC+CGG - chr7_3:59553050-59553069 Msa1113330:CDS 45.0%
! AATGAGGCTTTGACACCAAC+TGG - chr7_3:59553079-59553098 Msa1113330:CDS 45.0%
GTATCCTTGAGAGTTCCAGT+TGG + chr7_3:59553097-59553116 None:intergenic 45.0%
CTGGAACTCTCAAGGATACT+TGG - chr7_3:59553098-59553117 Msa1113330:CDS 45.0%
! TTCATATGGGCTGATCTCTC+AGG + chr7_3:59553129-59553148 None:intergenic 45.0%
ATGCCTGACATGCCTCAAAT+AGG - chr7_3:59553532-59553551 Msa1113330:intron 45.0%
AGGATGATGAAACCTGCATG+TGG + chr7_3:59553857-59553876 None:intergenic 45.0%
CATCATCCTAAAGACAAGGC+TGG - chr7_3:59553868-59553887 Msa1113330:intron 45.0%
TCATCCTAAAGACAAGGCTG+GGG - chr7_3:59553870-59553889 Msa1113330:intron 45.0%
GACTGGACAGTAGGATAAAC+AGG + chr7_3:59554346-59554365 None:intergenic 45.0%
CATCATATATGCCCAGTCCA+AGG - chr7_3:59554422-59554441 Msa1113330:intron 45.0%
ACATTGTATGTACTCCACCC+AGG + chr7_3:59554505-59554524 None:intergenic 45.0%
GACGTGGTATTCTATGCTTG+TGG - chr7_3:59554574-59554593 Msa1113330:intron 45.0%
ACTTGTGTGTTGTGTGTGTG+TGG - chr7_3:59554744-59554763 Msa1113330:intron 45.0%
! ATTCATGTGCTGCTGTCACT+TGG - chr7_3:59554792-59554811 Msa1113330:intron 45.0%
TCGCCCAACTAACTTAACCA+TGG + chr7_3:59554852-59554871 None:intergenic 45.0%
GGTTAAGTTAGTTGGGCGAT+TGG - chr7_3:59554853-59554872 Msa1113330:intron 45.0%
TATGGACAAGGACGTGAGAT+GGG + chr7_3:59554887-59554906 None:intergenic 45.0%
TTATGGACAAGGACGTGAGA+TGG + chr7_3:59554888-59554907 None:intergenic 45.0%
TCTCACGTCCTTGTCCATAA+AGG - chr7_3:59554888-59554907 Msa1113330:intron 45.0%
ACCTATGGAACTTCTCACCA+AGG - chr7_3:59555205-59555224 Msa1113330:intron 45.0%
ACCTTGGTGAGAAGTTCCAT+AGG + chr7_3:59555209-59555228 None:intergenic 45.0%
TAGAAAATGCAGGACTCCCA+GGG - chr7_3:59555233-59555252 Msa1113330:intron 45.0%
! CGGTATTGAGAATATACCCC+TGG + chr7_3:59555253-59555272 None:intergenic 45.0%
AATTGGCATTCAGGCTGATC+AGG + chr7_3:59555337-59555356 None:intergenic 45.0%
GCCAATTCTACATGAAGACG+GGG - chr7_3:59555350-59555369 Msa1113330:intron 45.0%
CCAATTCTACATGAAGACGG+GGG - chr7_3:59555351-59555370 Msa1113330:intron 45.0%
GGGACTCAAAACACAATCAG+GGG + chr7_3:59555434-59555453 None:intergenic 45.0%
GGGGACTCAAAACACAATCA+GGG + chr7_3:59555435-59555454 None:intergenic 45.0%
AGGGGACTCAAAACACAATC+AGG + chr7_3:59555436-59555455 None:intergenic 45.0%
!! GATTGTGTTTTGAGTCCCCT+TGG - chr7_3:59555436-59555455 Msa1113330:CDS 45.0%
TATCAACTCACAGGACGCAA+AGG + chr7_3:59555466-59555485 None:intergenic 45.0%
TGTGCTCTGTGCAGGAATAT+TGG - chr7_3:59555809-59555828 Msa1113330:intron 45.0%
GTGCTCTGTGCAGGAATATT+GGG - chr7_3:59555810-59555829 Msa1113330:intron 45.0%
CTCTCTCCAATATGAGACCA+TGG + chr7_3:59556223-59556242 None:intergenic 45.0%
CATGGTCTCATATTGGAGAG+AGG - chr7_3:59556221-59556240 Msa1113330:intron 45.0%
GAAAAAGAGCAGAGGCAGTA+TGG - chr7_3:59556243-59556262 Msa1113330:intron 45.0%
TATGGGATATATGCGAACCG+AGG - chr7_3:59556261-59556280 Msa1113330:intron 45.0%
ATGGGATATATGCGAACCGA+GGG - chr7_3:59556262-59556281 Msa1113330:intron 45.0%
! GAGGTAATCCCATTTTCTGC+AGG - chr7_3:59556541-59556560 Msa1113330:intron 45.0%
TGGTTCTCCCTGCAGAAAAT+GGG + chr7_3:59556552-59556571 None:intergenic 45.0%
CTGCAAGTTTGACCATCCAA+TGG - chr7_3:59556619-59556638 Msa1113330:intron 45.0%
AGGTGAAGATTCCCATTGGA+TGG + chr7_3:59556634-59556653 None:intergenic 45.0%
!! TCAGAAGGACTTGTTGAGTC+GGG - chr7_3:59556740-59556759 Msa1113330:intron 45.0%
TCATCATCACCGGAAGGATT+CGG + chr7_3:59556806-59556825 None:intergenic 45.0%
TCAATGTCATCATCACCGGA+AGG + chr7_3:59556812-59556831 None:intergenic 45.0%
TCTGTACATCTCCAGCAATG+GGG + chr7_3:59556926-59556945 None:intergenic 45.0%
CTCTGTACATCTCCAGCAAT+GGG + chr7_3:59556927-59556946 None:intergenic 45.0%
ACTCTGTACATCTCCAGCAA+TGG + chr7_3:59556928-59556947 None:intergenic 45.0%
AGCATGAAATCCAGAACGAC+TGG + chr7_3:59557012-59557031 None:intergenic 45.0%
TGCAATGGCAAGCCAACATT+AGG - chr7_3:59557261-59557280 Msa1113330:five_prime_UTR 45.0%
TGAAAAAAGGGAGCGAGCGA+GGG - chr7_3:59550126-59550145 Msa1113330:three_prime_UTR 50.0%
CTTGGTTGAATTGAGGGTGG+AGG - chr7_3:59550389-59550408 Msa1113330:three_prime_UTR 50.0%
! TTGAGGGTGGAGGTTGATCT+CGG - chr7_3:59550399-59550418 Msa1113330:three_prime_UTR 50.0%
GAATACGATGCCATCCCTCA+AGG - chr7_3:59550548-59550567 Msa1113330:three_prime_UTR 50.0%
TCATCCTCCTAACAGGAAGC+TGG - chr7_3:59551524-59551543 Msa1113330:intron 50.0%
GTTCGTACCAGCTTCCTGTT+AGG + chr7_3:59551534-59551553 None:intergenic 50.0%
GTACTCCTGAACATGTGTGC+AGG + chr7_3:59551802-59551821 None:intergenic 50.0%
ATTGCCACTGCACGGATGAA+AGG - chr7_3:59552043-59552062 Msa1113330:CDS 50.0%
TGAAAGGCGAGTTCCCAGAA+AGG - chr7_3:59552059-59552078 Msa1113330:CDS 50.0%
GCGAGTTCCCAGAAAGGTTA+GGG - chr7_3:59552065-59552084 Msa1113330:CDS 50.0%
ATCAACTCTCCCAACTCAGC+TGG - chr7_3:59552360-59552379 Msa1113330:intron 50.0%
TCAACTCTCCCAACTCAGCT+GGG - chr7_3:59552361-59552380 Msa1113330:intron 50.0%
GAGTTTCATTGCACGGACGT+TGG + chr7_3:59552585-59552604 None:intergenic 50.0%
GTATTCCCATGATCAAGGCC+GGG - chr7_3:59553051-59553070 Msa1113330:CDS 50.0%
TATTCCCATGATCAAGGCCG+GGG - chr7_3:59553052-59553071 Msa1113330:CDS 50.0%
TTAACCCCGGCCTTGATCAT+GGG + chr7_3:59553059-59553078 None:intergenic 50.0%
TTTAACCCCGGCCTTGATCA+TGG + chr7_3:59553060-59553079 None:intergenic 50.0%
TCAAGGCCGGGGTTAAAATG+AGG - chr7_3:59553063-59553082 Msa1113330:CDS 50.0%
GACACCAACTGGAACTCTCA+AGG - chr7_3:59553090-59553109 Msa1113330:CDS 50.0%
TGATGAATGGAGATGGGCAG+TGG - chr7_3:59553334-59553353 Msa1113330:intron 50.0%
GATGAATGGAGATGGGCAGT+GGG - chr7_3:59553335-59553354 Msa1113330:intron 50.0%
ATGAATGGAGATGGGCAGTG+GGG - chr7_3:59553336-59553355 Msa1113330:intron 50.0%
TTCACATAGGCTCCCTCTAC+TGG + chr7_3:59553565-59553584 None:intergenic 50.0%
! GCAAATTTGGAGCCACATGC+AGG - chr7_3:59553842-59553861 Msa1113330:intron 50.0%
TGAATACTAACAGGGCGGAG+TGG + chr7_3:59553931-59553950 None:intergenic 50.0%
GTAGTTGGAGACTGGACAGT+AGG + chr7_3:59554355-59554374 None:intergenic 50.0%
AGCAGGTCAGCAGTCATATG+CGG - chr7_3:59554375-59554394 Msa1113330:intron 50.0%
CATATATGCCCAGTCCAAGG+TGG - chr7_3:59554425-59554444 Msa1113330:intron 50.0%
AAGGAGTGGTTTCAGTGCCT+GGG - chr7_3:59554485-59554504 Msa1113330:intron 50.0%
TGTGTGTTGTGTGTGTGTGG+TGG - chr7_3:59554747-59554766 Msa1113330:intron 50.0%
GTGTGTTGTGTGTGTGTGGT+GGG - chr7_3:59554748-59554767 Msa1113330:intron 50.0%
TGTGTTGTGTGTGTGTGGTG+GGG - chr7_3:59554749-59554768 Msa1113330:intron 50.0%
ATGGACAAGGACGTGAGATG+GGG + chr7_3:59554886-59554905 None:intergenic 50.0%
CTAGAAAATGCAGGACTCCC+AGG - chr7_3:59555232-59555251 Msa1113330:intron 50.0%
AGAAAATGCAGGACTCCCAG+GGG - chr7_3:59555234-59555253 Msa1113330:intron 50.0%
CTACTGGAACAGAGCCAGAA+CGG + chr7_3:59555273-59555292 None:intergenic 50.0%
CCCCCGTCTTCATGTAGAAT+TGG + chr7_3:59555354-59555373 None:intergenic 50.0%
AAGACGGGGGATTGCAAGTT+CGG - chr7_3:59555364-59555383 Msa1113330:intron 50.0%
! GTTTTCACCATCCACGTGAG+AGG - chr7_3:59555398-59555417 Msa1113330:intron 50.0%
CTCAAAACACAATCAGGGGC+AGG + chr7_3:59555430-59555449 None:intergenic 50.0%
AACTCACAGGACGCAAAGGA+AGG + chr7_3:59555462-59555481 None:intergenic 50.0%
AACTCGACGCTGGAGCTAAA+AGG - chr7_3:59555897-59555916 Msa1113330:intron 50.0%
GGAGAGAGGAAAAAGAGCAG+AGG - chr7_3:59556235-59556254 Msa1113330:intron 50.0%
! TGTGGCAGCATTGCTGTTGA+TGG - chr7_3:59556334-59556353 Msa1113330:intron 50.0%
GTGGTTCTCCCTGCAGAAAA+TGG + chr7_3:59556553-59556572 None:intergenic 50.0%
GGATGGTCAAACTTGCAGCT+TGG + chr7_3:59556617-59556636 None:intergenic 50.0%
GGCTTCAGCTAAAGGTGATG+CGG + chr7_3:59556666-59556685 None:intergenic 50.0%
CGTCTGCTAGGTTCTTCATC+AGG - chr7_3:59556695-59556714 Msa1113330:intron 50.0%
GAGACTAGACCGAATCCTTC+CGG - chr7_3:59556794-59556813 Msa1113330:intron 50.0%
GTTGGCAAATCCAGTCGTTC+TGG - chr7_3:59556999-59557018 Msa1113330:five_prime_UTR 50.0%
GTGAAAAAAGGGAGCGAGCG+AGG - chr7_3:59550125-59550144 Msa1113330:three_prime_UTR 55.0%
GAAAAAAGGGAGCGAGCGAG+GGG - chr7_3:59550127-59550146 Msa1113330:three_prime_UTR 55.0%
AAAAAAGGGAGCGAGCGAGG+GGG - chr7_3:59550128-59550147 Msa1113330:three_prime_UTR 55.0%
! TGAGGGTGGAGGTTGATCTC+GGG - chr7_3:59550400-59550419 Msa1113330:three_prime_UTR 55.0%
TGTGAGTGTGACAGACAGGG+CGG - chr7_3:59550480-59550499 Msa1113330:three_prime_UTR 55.0%
ATCACACAGTGGGGCCATCA+AGG - chr7_3:59551195-59551214 Msa1113330:intron 55.0%
CCAAGTCACAGACACTGGCA+GGG + chr7_3:59551222-59551241 None:intergenic 55.0%
TCCAAGTCACAGACACTGGC+AGG + chr7_3:59551223-59551242 None:intergenic 55.0%
TCTCCAGGATGCTCCGGATA+CGG + chr7_3:59551441-59551460 None:intergenic 55.0%
!! TCTGGTTCTCCAGGATGCTC+CGG + chr7_3:59551447-59551466 None:intergenic 55.0%
CGTACCAGCTTCCTGTTAGG+AGG + chr7_3:59551531-59551550 None:intergenic 55.0%
!! TCCAAGGTGCTGGCAGCTAT+AGG - chr7_3:59551683-59551702 Msa1113330:intron 55.0%
AGAAGAACAGCAAGGGGGAG+TGG + chr7_3:59551737-59551756 None:intergenic 55.0%
GTCAGGCTATTGCCACTGCA+CGG - chr7_3:59552035-59552054 Msa1113330:CDS 55.0%
GGCGAGTTCCCAGAAAGGTT+AGG - chr7_3:59552064-59552083 Msa1113330:CDS 55.0%
CTGGCTGCCCTAACCTTTCT+GGG + chr7_3:59552075-59552094 None:intergenic 55.0%
TCTGGCTGCCCTAACCTTTC+TGG + chr7_3:59552076-59552095 None:intergenic 55.0%
GTTAGGGCAGCCAGAATGTC+AGG - chr7_3:59552081-59552100 Msa1113330:CDS 55.0%
CAACTCTCCCAACTCAGCTG+GGG - chr7_3:59552362-59552381 Msa1113330:intron 55.0%
ATGTCTGCCCCAGCTGAGTT+GGG + chr7_3:59552372-59552391 None:intergenic 55.0%
TGAATGGAGATGGGCAGTGG+GGG - chr7_3:59553337-59553356 Msa1113330:intron 55.0%
ACATAGGCTCCCTCTACTGG+AGG + chr7_3:59553562-59553581 None:intergenic 55.0%
! GCAACCCCAGCCTTGTCTTT+AGG + chr7_3:59553877-59553896 None:intergenic 55.0%
AAAGACAAGGCTGGGGTTGC+TGG - chr7_3:59553877-59553896 Msa1113330:intron 55.0%
GTCCAGTCTCCAACTACAGC+AGG - chr7_3:59554358-59554377 Msa1113330:intron 55.0%
GACCTGCTGTAGTTGGAGAC+TGG + chr7_3:59554363-59554382 None:intergenic 55.0%
GACTGCTGACCTGCTGTAGT+TGG + chr7_3:59554370-59554389 None:intergenic 55.0%
! GGCACTGAAACCACTCCTTG+AGG + chr7_3:59554484-59554503 None:intergenic 55.0%
CAAGGAGTGGTTTCAGTGCC+TGG - chr7_3:59554484-59554503 Msa1113330:intron 55.0%
GTGTTGTGTGTGTGTGGTGG+GGG - chr7_3:59554750-59554769 Msa1113330:intron 55.0%
! TGTTGTGTGTGTGTGGTGGG+GGG - chr7_3:59554751-59554770 Msa1113330:intron 55.0%
! CATGTGCTGCTGTCACTTGG+TGG - chr7_3:59554795-59554814 Msa1113330:intron 55.0%
!! CGTTCTGGCTCTGTTCCAGT+AGG - chr7_3:59555271-59555290 Msa1113330:intron 55.0%
TCAGGCTGATCAGGTCTCTC+TGG + chr7_3:59555328-59555347 None:intergenic 55.0%
GAATCGTCCTCTCACGTGGA+TGG + chr7_3:59555408-59555427 None:intergenic 55.0%
AGGACGCAAAGGAAGGCCAA+GGG + chr7_3:59555455-59555474 None:intergenic 55.0%
! TTGGGCTTTGTGCTCTGTGC+AGG - chr7_3:59555801-59555820 Msa1113330:intron 55.0%
TCACCTTTAGCTGAAGCCGC+AGG - chr7_3:59556668-59556687 Msa1113330:intron 55.0%
CTTTAGCTGAAGCCGCAGGA+CGG - chr7_3:59556672-59556691 Msa1113330:intron 55.0%
AGTCGGGCTCAGTAAAGCCA+AGG - chr7_3:59556756-59556775 Msa1113330:intron 55.0%
AAAAAGGGAGCGAGCGAGGG+GGG - chr7_3:59550129-59550148 Msa1113330:three_prime_UTR 60.0%
GACACTGGCAGGGTCCTTGA+TGG + chr7_3:59551212-59551231 None:intergenic 60.0%
CCCTGCCAGTGTCTGTGACT+TGG - chr7_3:59551219-59551238 Msa1113330:intron 60.0%
GCCTATAGCTGCCAGCACCT+TGG + chr7_3:59551687-59551706 None:intergenic 60.0%
CTCGCCTTTCATCCGTGCAG+TGG + chr7_3:59552050-59552069 None:intergenic 60.0%
CATGTCTGCCCCAGCTGAGT+TGG + chr7_3:59552373-59552392 None:intergenic 60.0%
GAATGGAGATGGGCAGTGGG+GGG - chr7_3:59553338-59553357 Msa1113330:intron 60.0%
GGTCAGCAGTCATATGCGGC+AGG - chr7_3:59554379-59554398 Msa1113330:intron 60.0%
ATGCCCAGTCCAAGGTGGCA+AGG - chr7_3:59554430-59554449 Msa1113330:intron 60.0%
GAGTGGTTTCAGTGCCTGGG+TGG - chr7_3:59554488-59554507 Msa1113330:intron 60.0%
! TGTGTGGTGGGGGGCTTGTT+CGG - chr7_3:59554760-59554779 Msa1113330:intron 60.0%
GCAGGAATCGTCCTCTCACG+TGG + chr7_3:59555412-59555431 None:intergenic 60.0%
GGACGCAAAGGAAGGCCAAG+GGG + chr7_3:59555454-59555473 None:intergenic 60.0%
CAGGACGCAAAGGAAGGCCA+AGG + chr7_3:59555456-59555475 None:intergenic 60.0%
CGTCCTGCGGCTTCAGCTAA+AGG + chr7_3:59556674-59556693 None:intergenic 60.0%
CGGGCTCAGTAAAGCCAAGG+AGG - chr7_3:59556759-59556778 Msa1113330:intron 60.0%
! GGACCGTATCCGGAGCATCC+TGG - chr7_3:59551435-59551454 Msa1113330:intron 65.0%
GGGCCTTGCCACCTTGGACT+GGG + chr7_3:59554436-59554455 None:intergenic 65.0%
CTTGAGGGGCCTTGCCACCT+TGG + chr7_3:59554442-59554461 None:intergenic 65.0%
ACCTAGCAGACGCCGTCCTG+CGG + chr7_3:59556687-59556706 None:intergenic 65.0%
GCGAGCGAGGGGGGATCACT+AGG - chr7_3:59550138-59550157 Msa1113330:three_prime_UTR 70.0%
GGGGCCTTGCCACCTTGGAC+TGG + chr7_3:59554437-59554456 None:intergenic 70.0%
GCCGCAGGACGGCGTCTGCT+AGG - chr7_3:59556683-59556702 Msa1113330:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 59550120 59557381 59550120 ID=Msa1113330;Name=Msa1113330
chr7_3 mRNA 59550120 59557381 59550120 ID=Msa1113330-mRNA-1;Parent=Msa1113330;Name=Msa1113330-mRNA-1;_AED=0.09;_eAED=0.09;_QI=425|1|1|1|1|1|7|537|418
chr7_3 exon 59550120 59550938 59550120 ID=Msa1113330-mRNA-1:exon:13272;Parent=Msa1113330-mRNA-1
chr7_3 exon 59552027 59552344 59552027 ID=Msa1113330-mRNA-1:exon:13271;Parent=Msa1113330-mRNA-1
chr7_3 exon 59552979 59553269 59552979 ID=Msa1113330-mRNA-1:exon:13270;Parent=Msa1113330-mRNA-1
chr7_3 exon 59553562 59553681 59553562 ID=Msa1113330-mRNA-1:exon:13269;Parent=Msa1113330-mRNA-1
chr7_3 exon 59555399 59555461 59555399 ID=Msa1113330-mRNA-1:exon:13268;Parent=Msa1113330-mRNA-1
chr7_3 exon 59555956 59556113 59555956 ID=Msa1113330-mRNA-1:exon:13267;Parent=Msa1113330-mRNA-1
chr7_3 exon 59556932 59557381 59556932 ID=Msa1113330-mRNA-1:exon:13266;Parent=Msa1113330-mRNA-1
chr7_3 five_prime_UTR 59556957 59557381 59556957 ID=Msa1113330-mRNA-1:five_prime_utr;Parent=Msa1113330-mRNA-1
chr7_3 CDS 59556932 59556956 59556932 ID=Msa1113330-mRNA-1:cds;Parent=Msa1113330-mRNA-1
chr7_3 CDS 59555956 59556113 59555956 ID=Msa1113330-mRNA-1:cds;Parent=Msa1113330-mRNA-1
chr7_3 CDS 59555399 59555461 59555399 ID=Msa1113330-mRNA-1:cds;Parent=Msa1113330-mRNA-1
chr7_3 CDS 59553562 59553681 59553562 ID=Msa1113330-mRNA-1:cds;Parent=Msa1113330-mRNA-1
chr7_3 CDS 59552979 59553269 59552979 ID=Msa1113330-mRNA-1:cds;Parent=Msa1113330-mRNA-1
chr7_3 CDS 59552027 59552344 59552027 ID=Msa1113330-mRNA-1:cds;Parent=Msa1113330-mRNA-1
chr7_3 CDS 59550657 59550938 59550657 ID=Msa1113330-mRNA-1:cds;Parent=Msa1113330-mRNA-1
chr7_3 three_prime_UTR 59550120 59550656 59550120 ID=Msa1113330-mRNA-1:three_prime_utr;Parent=Msa1113330-mRNA-1
Gene Sequence

>Msa1113330

ATGGAATACGATGCCATCCCTCAAGAGGCAATGTGGCAAATGAGCTTGAGGCCAAGTGAAACAATGGAATCAGGACCGTATCCGGAGCATCCTGGAGAACCAGATTGTTCATATTACATAAGAACCGGCCTTTGTAGATTTGGAGCAACATGTCGGTTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCACTGCACGGATGAAAGGCGAGTTCCCAGAAAGGTTAGGGCAGCCAGAATGTCAGTACTATCTGAAAACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAAAGACAAGGCTGGGGTTGCTGGAAGAGTTGCCCTGAACATTTTAGGCTATCCACTCCGCCCTAGTGAGTCTGAATGTGCTTATTATTTAAGAACTGGTCAATGCAAATTTGGGAACACTTGTAAATTTCACCATCCTCAACCAAGTAATATGGTACTTCCAATGAGAGGTTCTCCTGTTTATCCTACTGTCCAGTCTCCAACTACAGCAGGTCAGCAGTCATATGCGGCAGGAATTACAAATTGGTCTACTTCATCATATATGCCCAGTCCAAGGTGGCAAGGCCCCTCAAGTTATGCACCTTTAATTCTACCTCAAGGAGTGGTTTCAGTGCCTGGGTGGAGTACATACAATGGTCAAATGGGATCAGACAGTCCACAACAAACAATGAGAAATGATCAAACCTATGGAACTTCTCACCAAGGTGATCTAGAAAATGCAGGACTCCCAGGGGTATATTCTCAATACCGTTCTGGCTCTGTTCCAGTAGGATTCTATGCTTTGCAAAGGGAGAACATTTTTCCAGAGAGACCTGATCAGCCTGAATGCCAATTCTACATGAAGACGGGGGATTGCAAGTTCGGTGCTGTCTGTCGTTTTCACCATCCACGTGAGAGGACGATTCCTGCCCCTGATTGTGTTTTGAGTCCCCTTGGCCTTCCTTTGCGTCCTGGAGAACCACTTTGTGTATTCTATTCGCGGTATGGCATATGCAAATTTGGTCCAAGCTGCAAGTTTGACCATCCAATGGGAATCTTCACCTATAATGTATCCGCATCACCTTTAGCTGAAGCCGCAGGACGGCGTCTGCTAGGTTCTTCATCAGGAACTGCTGCATTAAGTTTATCATCAGAAGGACTTGTTGAGTCGGGCTCAGTAAAGCCAAGGAGGCTTTCATTATCAGAGACTAGACCGAATCCTTCCGGTGATGATGACATTGATGATGAGGGATAA
Protein sequence

>Msa1113330

MEYDAIPQEAMWQMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPSESECAYYLRTGQCKFGNTCKFHHPQPSNMVLPMRGSPVYPTVQSPTTAGQQSYAAGITNWSTSSYMPSPRWQGPSSYAPLILPQGVVSVPGWSTYNGQMGSDSPQQTMRNDQTYGTSHQGDLENAGLPGVYSQYRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERTIPAPDCVLSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNVSASPLAEAAGRRLLGSSSGTAALSLSSEGLVESGSVKPRRLSLSETRPNPSGDDDIDDEG*