Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1113690 | XP_003625051.2 | 93.213 | 221 | 13 | 2 | 1 | 220 | 1 | 220 | 1.70e-120 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1113690 | sp|Q9M1K1|ORG2_ARATH | 40.417 | 240 | 107 | 7 | 1 | 220 | 1 | 224 | 4.04e-45 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1113690 | G7KRQ0 | 93.213 | 221 | 13 | 2 | 1 | 220 | 1 | 220 | 8.11e-121 | 353 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1113690 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1113690 | MtrunA17_Chr7g0256671 | 93.213 | 221 | 13 | 2 | 1 | 220 | 1 | 220 | 1.56e-124 | 353 |
| Msa1113690 | MtrunA17_Chr1g0170581 | 58.222 | 225 | 83 | 7 | 1 | 220 | 1 | 219 | 4.29e-74 | 225 |
| Msa1113690 | MtrunA17_Chr1g0170591 | 57.143 | 224 | 79 | 7 | 1 | 220 | 1 | 211 | 2.40e-72 | 220 |
| Msa1113690 | MtrunA17_Chr1g0170571 | 58.929 | 224 | 75 | 7 | 1 | 220 | 1 | 211 | 3.83e-69 | 212 |
| Msa1113690 | MtrunA17_Chr6g0474681 | 33.553 | 152 | 92 | 4 | 67 | 216 | 6 | 150 | 1.87e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1113690 | AT3G56970.1 | 40.417 | 240 | 107 | 7 | 1 | 220 | 1 | 224 | 4.10e-46 | 154 |
| Msa1113690 | AT2G41240.1 | 41.593 | 226 | 116 | 5 | 1 | 220 | 1 | 216 | 6.53e-40 | 137 |
| Msa1113690 | AT3G56980.1 | 41.350 | 237 | 114 | 6 | 1 | 220 | 1 | 229 | 1.19e-38 | 135 |
| Msa1113690 | AT2G41240.2 | 41.150 | 226 | 116 | 6 | 1 | 220 | 1 | 215 | 2.08e-37 | 131 |
| Msa1113690 | AT5G04150.2 | 42.593 | 162 | 84 | 3 | 64 | 221 | 83 | 239 | 3.71e-35 | 125 |
| Msa1113690 | AT5G04150.1 | 43.125 | 160 | 84 | 3 | 64 | 220 | 83 | 238 | 8.86e-34 | 122 |
Find 36 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCTTGGCCATAAGTTT+AGG | 0.279241 | 7_3:+60129276 | None:intergenic |
| TCACTTCGTTCACTTCTTCC+TGG | 0.286326 | 7_3:-60129198 | Msa1113690:CDS |
| AGCATTGTGGTTAAGCTTCT+TGG | 0.288890 | 7_3:+60129263 | None:intergenic |
| GCTTCTTGGCCATAAGTTTA+GGG | 0.303457 | 7_3:+60129277 | None:intergenic |
| TCTTCGTCTTCTAAAACCTT+TGG | 0.335383 | 7_3:-60127057 | Msa1113690:CDS |
| ACAAAAGCAGAATTGTGATT+TGG | 0.342300 | 7_3:+60127204 | None:intergenic |
| GCCACCATCCCCTAAACTTA+TGG | 0.372270 | 7_3:-60129286 | Msa1113690:CDS |
| CTTCTCTTTATGACTAGTTA+AGG | 0.384779 | 7_3:+60129383 | None:intergenic |
| TCAATCTCGACATGTTCCTT+TGG | 0.385183 | 7_3:+60129312 | None:intergenic |
| AAGACACGTGAAATTGTTAC+CGG | 0.393671 | 7_3:+60127348 | None:intergenic |
| ACGTGTCTTGAAATACATAT+CGG | 0.413920 | 7_3:-60127334 | Msa1113690:CDS |
| AAACATGGGATGGCTCTTAG+AGG | 0.417919 | 7_3:-60129424 | Msa1113690:CDS |
| TTGATGTGTTTAGAAAATAA+TGG | 0.451673 | 7_3:-60127096 | Msa1113690:CDS |
| CTCAGATAGAGGAATCTTGT+AGG | 0.481665 | 7_3:+60127122 | None:intergenic |
| TCGTCTTCTAAAACCTTTGG+AGG | 0.484965 | 7_3:-60127054 | Msa1113690:CDS |
| CACATCAAGATCTCAGATAG+AGG | 0.501569 | 7_3:+60127111 | None:intergenic |
| TTGGCCATAAGTTTAGGGGA+TGG | 0.512241 | 7_3:+60129282 | None:intergenic |
| AGGAACATGTCGAGATTGAA+AGG | 0.535910 | 7_3:-60129308 | Msa1113690:CDS |
| GCCATAAGTTTAGGGGATGG+TGG | 0.542896 | 7_3:+60129285 | None:intergenic |
| TCTTCCTGGTGAAGATCAAA+CGG | 0.553586 | 7_3:-60129184 | Msa1113690:intron |
| ATAGAAGAGCCTCCCTCCAA+AGG | 0.569392 | 7_3:+60127041 | None:intergenic |
| GGTGAAGAGAATTGATGATA+CGG | 0.572582 | 7_3:+60129333 | None:intergenic |
| CTTCTTGGCCATAAGTTTAG+GGG | 0.575873 | 7_3:+60129278 | None:intergenic |
| CGTCTTCTAAAACCTTTGGA+GGG | 0.576217 | 7_3:-60127053 | Msa1113690:CDS |
| CTTCTAAAACCTTTGGAGGG+AGG | 0.578982 | 7_3:-60127050 | Msa1113690:CDS |
| CAGTTCTCATACTCAAACAT+GGG | 0.581426 | 7_3:-60129438 | Msa1113690:CDS |
| TCAGTTCTCATACTCAAACA+TGG | 0.591812 | 7_3:-60129439 | Msa1113690:CDS |
| TCTCATACTCAAACATGGGA+TGG | 0.596383 | 7_3:-60129434 | Msa1113690:CDS |
| TCATCAATTCTCTTCACCAA+AGG | 0.612543 | 7_3:-60129328 | Msa1113690:CDS |
| GATTTACAAAAGCAAGTGCA+AGG | 0.639524 | 7_3:-60127312 | Msa1113690:CDS |
| ATTACCGTTTGATCTTCACC+AGG | 0.645561 | 7_3:+60129180 | None:intergenic |
| TTTGAGTATGAGAACTGAGG+TGG | 0.664685 | 7_3:+60129444 | None:intergenic |
| GATCACGTTCACTAGCATTG+TGG | 0.694395 | 7_3:+60129250 | None:intergenic |
| CAGTTAACAAAGAATCACAA+AGG | 0.715677 | 7_3:-60127236 | Msa1113690:CDS |
| TTGAGTATGAGAACTGAGGT+GGG | 0.727246 | 7_3:+60129445 | None:intergenic |
| ATGTTTGAGTATGAGAACTG+AGG | 0.776306 | 7_3:+60129441 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAAAAAAATATAAT+TGG | - | chr7_3:60127992-60128011 | Msa1113690:intron | 0.0% |
| !! | TAAAAAAAAAAAATATAATT+GGG | - | chr7_3:60127993-60128012 | Msa1113690:intron | 0.0% |
| !!! | ATAACTAATTATTCTTTTAA+AGG | - | chr7_3:60128402-60128421 | Msa1113690:intron | 10.0% |
| !! | AAAACAATTGTATAGATTAA+TGG | - | chr7_3:60127557-60127576 | Msa1113690:intron | 15.0% |
| !! | AAAACAATTGTATAGATTAA+TGG | - | chr7_3:60127557-60127576 | Msa1113690:intron | 15.0% |
| !!! | TATTGGTTAGATTTTTATTT+TGG | + | chr7_3:60128261-60128280 | None:intergenic | 15.0% |
| !!! | AATTTATTTTGCAAACATAT+TGG | + | chr7_3:60128278-60128297 | None:intergenic | 15.0% |
| !! | GATACCAAATTAAAGAAAAT+TGG | + | chr7_3:60127303-60127322 | None:intergenic | 20.0% |
| !!! | AAGCTATTTTTTAAAATGAC+AGG | - | chr7_3:60127378-60127397 | Msa1113690:intron | 20.0% |
| !!! | AGCTATTTTTTAAAATGACA+GGG | - | chr7_3:60127379-60127398 | Msa1113690:intron | 20.0% |
| !!! | TATATGAATCGATTTTACTT+CGG | - | chr7_3:60127582-60127601 | Msa1113690:intron | 20.0% |
| !!! | TATATGAATCGATTTTACTT+CGG | - | chr7_3:60127582-60127601 | Msa1113690:intron | 20.0% |
| !!! | TAACCTACTTTAAGAAAATA+AGG | - | chr7_3:60128447-60128466 | Msa1113690:intron | 20.0% |
| !! | GAAAAATTAAATTGCAAAAC+AGG | - | chr7_3:60128547-60128566 | Msa1113690:intron | 20.0% |
| !! | ACAAACTAAGAAACATATTT+GGG | - | chr7_3:60128711-60128730 | Msa1113690:intron | 20.0% |
| !! | TTGATGTGTTTAGAAAATAA+TGG | - | chr7_3:60129344-60129363 | Msa1113690:CDS | 20.0% |
| ! | CCAAATTAAAGAAAATTGGA+AGG | + | chr7_3:60127299-60127318 | None:intergenic | 25.0% |
| !! | CCTTCCAATTTTCTTTAATT+TGG | - | chr7_3:60127296-60127315 | Msa1113690:CDS | 25.0% |
| !!! | TTTAGCTTTATATAACTCCA+TGG | - | chr7_3:60127407-60127426 | Msa1113690:intron | 25.0% |
| !!! | ATATGAATCGATTTTACTTC+GGG | - | chr7_3:60127583-60127602 | Msa1113690:intron | 25.0% |
| !!! | ATATGAATCGATTTTACTTC+GGG | - | chr7_3:60127583-60127602 | Msa1113690:intron | 25.0% |
| ! | AAAAAAAATATAATTGGGCC+TGG | - | chr7_3:60127998-60128017 | Msa1113690:intron | 25.0% |
| !!! | AGTTTTGATCTGACTTTTAT+TGG | - | chr7_3:60128142-60128161 | Msa1113690:intron | 25.0% |
| ! | ATGTGCAAAAAAATTAGAGA+TGG | - | chr7_3:60128354-60128373 | Msa1113690:intron | 25.0% |
| !!! | ACACCTTATTTTCTTAAAGT+AGG | + | chr7_3:60128453-60128472 | None:intergenic | 25.0% |
| ! | AAATTAAATTGCAAAACAGG+AGG | - | chr7_3:60128550-60128569 | Msa1113690:intron | 25.0% |
| !!! | TATTTGTTGTAATAAGGTTC+AGG | + | chr7_3:60128579-60128598 | None:intergenic | 25.0% |
| !!! | TCTGCTTATTTGTTGTAATA+AGG | + | chr7_3:60128585-60128604 | None:intergenic | 25.0% |
| ! | CACAAACTAAGAAACATATT+TGG | - | chr7_3:60128710-60128729 | Msa1113690:intron | 25.0% |
| ! | TGACGTATTCATAATATGAA+TGG | - | chr7_3:60128966-60128985 | Msa1113690:intron | 25.0% |
| ! | CTTCTCTTTATGACTAGTTA+AGG | + | chr7_3:60127060-60127079 | None:intergenic | 30.0% |
| AAAAAAAAATTGTGCCACAC+TGG | + | chr7_3:60127497-60127516 | None:intergenic | 30.0% | |
| AAAGCTAAAATGTGTATTGC+AGG | - | chr7_3:60127669-60127688 | Msa1113690:intron | 30.0% | |
| !!! | TTGCAGGAATTTTTTTTTGC+AGG | - | chr7_3:60127685-60127704 | Msa1113690:intron | 30.0% |
| AAAGCTAAAATGTGTATTGC+AGG | - | chr7_3:60127669-60127688 | Msa1113690:intron | 30.0% | |
| GTAAGTTAATCACAACTGTA+TGG | + | chr7_3:60127935-60127954 | None:intergenic | 30.0% | |
| ! | CTGTTTGTTTCGTAATGTTT+TGG | - | chr7_3:60128501-60128520 | Msa1113690:intron | 30.0% |
| ! | GCTTTTTATTACACCCTTTT+TGG | - | chr7_3:60128737-60128756 | Msa1113690:intron | 30.0% |
| !!! | TTTTTTCTGCAACATCAACA+TGG | + | chr7_3:60129063-60129082 | None:intergenic | 30.0% |
| ACGTGTCTTGAAATACATAT+CGG | - | chr7_3:60129106-60129125 | Msa1113690:intron | 30.0% | |
| CAGTTAACAAAGAATCACAA+AGG | - | chr7_3:60129204-60129223 | Msa1113690:CDS | 30.0% | |
| ACAAAAGCAGAATTGTGATT+TGG | + | chr7_3:60129239-60129258 | None:intergenic | 30.0% | |
| ! | CTTTTGTAGTTTCAACAAGT+AGG | - | chr7_3:60129252-60129271 | Msa1113690:CDS | 30.0% |
| !! | CTTCTATAACTTGCATTTTC+AGG | - | chr7_3:60129415-60129434 | Msa1113690:CDS | 30.0% |
| ATGTTTGAGTATGAGAACTG+AGG | + | chr7_3:60127002-60127021 | None:intergenic | 35.0% | |
| TCAGTTCTCATACTCAAACA+TGG | - | chr7_3:60127001-60127020 | Msa1113690:CDS | 35.0% | |
| CAGTTCTCATACTCAAACAT+GGG | - | chr7_3:60127002-60127021 | Msa1113690:CDS | 35.0% | |
| ! | GGTGAAGAGAATTGATGATA+CGG | + | chr7_3:60127110-60127129 | None:intergenic | 35.0% |
| TCATCAATTCTCTTCACCAA+AGG | - | chr7_3:60127112-60127131 | Msa1113690:CDS | 35.0% | |
| GCTTTATATAACTCCATGGT+TGG | - | chr7_3:60127411-60127430 | Msa1113690:intron | 35.0% | |
| ATTCATCATCAAACCAACCA+TGG | + | chr7_3:60127427-60127446 | None:intergenic | 35.0% | |
| !!! | GTGGCACAATTTTTTTTTGC+AGG | - | chr7_3:60127499-60127518 | Msa1113690:intron | 35.0% |
| AACTGTATGGTGGTATTTAG+TGG | + | chr7_3:60127922-60127941 | None:intergenic | 35.0% | |
| AGTTAATCACAACTGTATGG+TGG | + | chr7_3:60127932-60127951 | None:intergenic | 35.0% | |
| CCAATGATCGATTAATCTAG+AGG | + | chr7_3:60128197-60128216 | None:intergenic | 35.0% | |
| CCTCTAGATTAATCGATCAT+TGG | - | chr7_3:60128194-60128213 | Msa1113690:intron | 35.0% | |
| ATTGGATCAGAGACTATTCT+TGG | - | chr7_3:60128212-60128231 | Msa1113690:intron | 35.0% | |
| ! | AGATTTGTTTCAGTTGAGTC+TGG | + | chr7_3:60128618-60128637 | None:intergenic | 35.0% |
| ATCCAAACTCGTTCCAAAAA+GGG | + | chr7_3:60128753-60128772 | None:intergenic | 35.0% | |
| GCAGAAAAAAATGAGCATTC+CGG | - | chr7_3:60129073-60129092 | Msa1113690:intron | 35.0% | |
| AAGACACGTGAAATTGTTAC+CGG | + | chr7_3:60129095-60129114 | None:intergenic | 35.0% | |
| GATTTACAAAAGCAAGTGCA+AGG | - | chr7_3:60129128-60129147 | Msa1113690:intron | 35.0% | |
| !! | TCTTCGTCTTCTAAAACCTT+TGG | - | chr7_3:60129383-60129402 | Msa1113690:CDS | 35.0% |
| TTGAGTATGAGAACTGAGGT+GGG | + | chr7_3:60126998-60127017 | None:intergenic | 40.0% | |
| TTTGAGTATGAGAACTGAGG+TGG | + | chr7_3:60126999-60127018 | None:intergenic | 40.0% | |
| TCTCATACTCAAACATGGGA+TGG | - | chr7_3:60127006-60127025 | Msa1113690:CDS | 40.0% | |
| TCAATCTCGACATGTTCCTT+TGG | + | chr7_3:60127131-60127150 | None:intergenic | 40.0% | |
| AGGAACATGTCGAGATTGAA+AGG | - | chr7_3:60127132-60127151 | Msa1113690:CDS | 40.0% | |
| CTTCTTGGCCATAAGTTTAG+GGG | + | chr7_3:60127165-60127184 | None:intergenic | 40.0% | |
| GCTTCTTGGCCATAAGTTTA+GGG | + | chr7_3:60127166-60127185 | None:intergenic | 40.0% | |
| AGCTTCTTGGCCATAAGTTT+AGG | + | chr7_3:60127167-60127186 | None:intergenic | 40.0% | |
| AGCATTGTGGTTAAGCTTCT+TGG | + | chr7_3:60127180-60127199 | None:intergenic | 40.0% | |
| TCTTCCTGGTGAAGATCAAA+CGG | - | chr7_3:60127256-60127275 | Msa1113690:CDS | 40.0% | |
| ATTACCGTTTGATCTTCACC+AGG | + | chr7_3:60127263-60127282 | None:intergenic | 40.0% | |
| AAATATAATTGGGCCTGGAC+TGG | - | chr7_3:60128003-60128022 | Msa1113690:intron | 40.0% | |
| CTAGAGATAAGCATACTCAG+GGG | + | chr7_3:60128065-60128084 | None:intergenic | 40.0% | |
| CCTAGAGATAAGCATACTCA+GGG | + | chr7_3:60128066-60128085 | None:intergenic | 40.0% | |
| ACCTAGAGATAAGCATACTC+AGG | + | chr7_3:60128067-60128086 | None:intergenic | 40.0% | |
| GTGCTAGCAATTTCTGTGTT+TGG | - | chr7_3:60128107-60128126 | Msa1113690:intron | 40.0% | |
| CAGTTGAGTCTGGTCATAAT+TGG | + | chr7_3:60128608-60128627 | None:intergenic | 40.0% | |
| CCTCTTTGAGCATATGTTGT+TGG | + | chr7_3:60128646-60128665 | None:intergenic | 40.0% | |
| CCAACAACATATGCTCAAAG+AGG | - | chr7_3:60128643-60128662 | Msa1113690:intron | 40.0% | |
| TGTGCTAGTTGCTAGTTGTT+TGG | + | chr7_3:60128694-60128713 | None:intergenic | 40.0% | |
| CATCCAAACTCGTTCCAAAA+AGG | + | chr7_3:60128754-60128773 | None:intergenic | 40.0% | |
| TAATTCCAAAATGCACCCTG+TGG | + | chr7_3:60128898-60128917 | None:intergenic | 40.0% | |
| CTCAGATAGAGGAATCTTGT+AGG | + | chr7_3:60129321-60129340 | None:intergenic | 40.0% | |
| CACATCAAGATCTCAGATAG+AGG | + | chr7_3:60129332-60129351 | None:intergenic | 40.0% | |
| !! | TCGTCTTCTAAAACCTTTGG+AGG | - | chr7_3:60129386-60129405 | Msa1113690:CDS | 40.0% |
| !! | CGTCTTCTAAAACCTTTGGA+GGG | - | chr7_3:60129387-60129406 | Msa1113690:CDS | 40.0% |
| AAACATGGGATGGCTCTTAG+AGG | - | chr7_3:60127016-60127035 | Msa1113690:CDS | 45.0% | |
| TTGGCCATAAGTTTAGGGGA+TGG | + | chr7_3:60127161-60127180 | None:intergenic | 45.0% | |
| GATCACGTTCACTAGCATTG+TGG | + | chr7_3:60127193-60127212 | None:intergenic | 45.0% | |
| TCACTTCGTTCACTTCTTCC+TGG | - | chr7_3:60127242-60127261 | Msa1113690:CDS | 45.0% | |
| TGAGACCTATGAGTATGCTC+AGG | - | chr7_3:60127450-60127469 | Msa1113690:intron | 45.0% | |
| GAGACCTATGAGTATGCTCA+GGG | - | chr7_3:60127451-60127470 | Msa1113690:intron | 45.0% | |
| AGACCTATGAGTATGCTCAG+GGG | - | chr7_3:60127452-60127471 | Msa1113690:intron | 45.0% | |
| !! | CGATTTTACTTCGGGTGTTG+CGG | - | chr7_3:60127591-60127610 | Msa1113690:intron | 45.0% |
| !! | CGATTTTACTTCGGGTGTTG+CGG | - | chr7_3:60127591-60127610 | Msa1113690:intron | 45.0% |
| GTATTGCAGGAATCGAACCT+AGG | - | chr7_3:60127868-60127887 | Msa1113690:intron | 45.0% | |
| ACCTAGGTTCCCTTGATGAA+AGG | - | chr7_3:60127884-60127903 | Msa1113690:intron | 45.0% | |
| CCTAGGTTCCCTTGATGAAA+GGG | - | chr7_3:60127885-60127904 | Msa1113690:intron | 45.0% | |
| CTAGGTTCCCTTGATGAAAG+GGG | - | chr7_3:60127886-60127905 | Msa1113690:intron | 45.0% | |
| CCCTGAGTATGCTTATCTCT+AGG | - | chr7_3:60128063-60128082 | Msa1113690:intron | 45.0% | |
| TTTATTGGACCACACTCGAG+TGG | - | chr7_3:60128157-60128176 | Msa1113690:intron | 45.0% | |
| !!! | CACCCTTTTTGGAACGAGTT+TGG | - | chr7_3:60128748-60128767 | Msa1113690:intron | 45.0% |
| GCAATATGCACAGGATCTGA+TGG | + | chr7_3:60128795-60128814 | None:intergenic | 45.0% | |
| ACTCTTCCTAGATTTCCTGC+CGG | - | chr7_3:60128824-60128843 | Msa1113690:intron | 45.0% | |
| GCTCTTCATCAACCTAAGTC+CGG | + | chr7_3:60128846-60128865 | None:intergenic | 45.0% | |
| !! | CTTCTAAAACCTTTGGAGGG+AGG | - | chr7_3:60129390-60129409 | Msa1113690:CDS | 45.0% |
| GCCACCATCCCCTAAACTTA+TGG | - | chr7_3:60127154-60127173 | Msa1113690:CDS | 50.0% | |
| GCCATAAGTTTAGGGGATGG+TGG | + | chr7_3:60127158-60127177 | None:intergenic | 50.0% | |
| !!! | TGTGCCACACTGGTTTTGTG+AGG | + | chr7_3:60127487-60127506 | None:intergenic | 50.0% |
| CCCTTTCATCAAGGGAACCT+AGG | + | chr7_3:60127888-60127907 | None:intergenic | 50.0% | |
| GAGATAAGCATACTCAGGGG+CGG | + | chr7_3:60128062-60128081 | None:intergenic | 50.0% | |
| AGCAGCTCTGCAATATGCAC+AGG | + | chr7_3:60128804-60128823 | None:intergenic | 50.0% | |
| CTAAGTCCGGCAGGAAATCT+AGG | + | chr7_3:60128833-60128852 | None:intergenic | 50.0% | |
| CTAGATTTCCTGCCGGACTT+AGG | - | chr7_3:60128831-60128850 | Msa1113690:intron | 50.0% | |
| TTCATCAACCTAAGTCCGGC+AGG | + | chr7_3:60128842-60128861 | None:intergenic | 50.0% | |
| ! | TGTGGCTTTGCAGTTCTTGG+AGG | + | chr7_3:60128880-60128899 | None:intergenic | 50.0% |
| TCCAAGAACTGCAAAGCCAC+AGG | - | chr7_3:60128879-60128898 | Msa1113690:intron | 50.0% | |
| CCAAGAACTGCAAAGCCACA+GGG | - | chr7_3:60128880-60128899 | Msa1113690:intron | 50.0% | |
| ! | CAAAGCCACAGGGTGCATTT+TGG | - | chr7_3:60128890-60128909 | Msa1113690:intron | 50.0% |
| ATAGAAGAGCCTCCCTCCAA+AGG | + | chr7_3:60129402-60129421 | None:intergenic | 50.0% | |
| CCTATGAGTATGCTCAGGGG+CGG | - | chr7_3:60127455-60127474 | Msa1113690:intron | 55.0% | |
| !!! | CACACTGGTTTTGTGAGGCC+AGG | + | chr7_3:60127482-60127501 | None:intergenic | 55.0% |
| CTGGCCTCACAAAACCAGTG+TGG | - | chr7_3:60127480-60127499 | Msa1113690:intron | 55.0% | |
| ACGTGCGCCCCTTTCATCAA+GGG | + | chr7_3:60127896-60127915 | None:intergenic | 55.0% | |
| AACGTGCGCCCCTTTCATCA+AGG | + | chr7_3:60127897-60127916 | None:intergenic | 55.0% | |
| !! | TAATTGGGCCTGGACTGGTG+TGG | - | chr7_3:60128008-60128027 | Msa1113690:intron | 55.0% |
| TTGGACCACACTCGAGTGGA+TGG | - | chr7_3:60128161-60128180 | Msa1113690:intron | 55.0% | |
| ACCACACTCGAGTGGATGGT+GGG | - | chr7_3:60128165-60128184 | Msa1113690:intron | 55.0% | |
| ! | CCCTGTGGCTTTGCAGTTCT+TGG | + | chr7_3:60128883-60128902 | None:intergenic | 55.0% |
| CCGCCCCTGAGCATACTCAT+AGG | + | chr7_3:60127458-60127477 | None:intergenic | 60.0% | |
| GACCACACTCGAGTGGATGG+TGG | - | chr7_3:60128164-60128183 | Msa1113690:intron | 60.0% | |
| CCACACTCGAGTGGATGGTG+GGG | - | chr7_3:60128166-60128185 | Msa1113690:intron | 60.0% | |
| !! | ACTCGAGTGGATGGTGGGGT+TGG | - | chr7_3:60128170-60128189 | Msa1113690:intron | 60.0% |
| AGTATGCTCAGGGGCGGACC+TGG | - | chr7_3:60127461-60127480 | Msa1113690:intron | 65.0% | |
| GGCAAGTGCCACACCAGTCC+AGG | + | chr7_3:60128019-60128038 | None:intergenic | 65.0% | |
| TGCCACAGTGTGCCGAGTCC+AGG | - | chr7_3:60128035-60128054 | Msa1113690:intron | 65.0% | |
| GACCTGGACTCGGCACACTG+TGG | + | chr7_3:60128040-60128059 | None:intergenic | 65.0% | |
| AGCATACTCAGGGGCGGACC+TGG | + | chr7_3:60128056-60128075 | None:intergenic | 65.0% | |
| CCCCACCATCCACTCGAGTG+TGG | + | chr7_3:60128169-60128188 | None:intergenic | 65.0% | |
| CTCAGGGGCGGACCTGGACT+CGG | + | chr7_3:60128050-60128069 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 60126981 | 60129481 | 60126981 | ID=Msa1113690;Name=Msa1113690 |
| chr7_3 | mRNA | 60126981 | 60129481 | 60126981 | ID=Msa1113690-mRNA-1;Parent=Msa1113690;Name=Msa1113690-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|2|0|233 |
| chr7_3 | exon | 60129185 | 60129481 | 60129185 | ID=Msa1113690-mRNA-1:exon:13466;Parent=Msa1113690-mRNA-1 |
| chr7_3 | exon | 60126981 | 60127385 | 60126981 | ID=Msa1113690-mRNA-1:exon:13465;Parent=Msa1113690-mRNA-1 |
| chr7_3 | CDS | 60129185 | 60129481 | 60129185 | ID=Msa1113690-mRNA-1:cds;Parent=Msa1113690-mRNA-1 |
| chr7_3 | CDS | 60126981 | 60127385 | 60126981 | ID=Msa1113690-mRNA-1:cds;Parent=Msa1113690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
