AlfalfaGEDB | Msa1115260

M. sativa cultivar zhongmu-4 / Msa1115260

KEGG: K11446
GO: GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034720 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
PFAM: PF02375.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115260	XP_013449908.1	92.686	834	56	2	94	926	1	830	0.0	1587

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115260	sp\|Q53WJ1\|JM703_ORYSJ	47.619	609	281	9	176	783	120	691	0.0	562

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115260	A0A072U3K4	92.686	834	56	2	94	926	1	830	0.0	1587

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TFs/TRs:

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Gene ID	Type	Classification
Msa1115260	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115260	MtrunA17_Chr7g0261401	92.686	834	56	2	94	926	1	830	0.0	1587
Msa1115260	MtrunA17_Chr1g0189211	46.209	699	334	10	96	773	20	697	0.0	624
Msa1115260	MtrunA17_Chr2g0303101	44.098	610	319	10	192	799	34	623	3.86e-150	469
Msa1115260	MtrunA17_Chr8g0380981	42.361	576	317	6	192	767	25	585	9.58e-145	457
Msa1115260	MtrunA17_Chr5g0397501	31.765	425	238	7	332	746	301	683	5.78e-53	201
Msa1115260	MtrunA17_Chr5g0397501	45.349	86	41	2	210	295	28	107	9.58e-13	72.8
Msa1115260	MtrunA17_Chr3g0116441	28.401	419	212	9	210	617	18	359	8.53e-37	150
Msa1115260	MtrunA17_Chr7g0261561	95.652	69	3	0	1	69	1	69	7.49e-35	142
Msa1115260	MtrunA17_Chr5g0410721	25.439	456	296	14	331	768	139	568	1.72e-34	142
Msa1115260	MtrunA17_Chr1g0164731	25.092	546	304	14	206	739	41	493	8.18e-33	135

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115260	AT1G08620.2	44.089	719	369	11	98	796	19	724	4.11e-179	551
Msa1115260	AT1G08620.4	44.089	719	369	11	98	796	19	724	4.11e-179	551
Msa1115260	AT1G08620.1	44.089	719	369	11	98	796	19	724	4.11e-179	551
Msa1115260	AT1G08620.3	44.089	719	369	11	98	796	33	738	5.78e-179	551
Msa1115260	AT2G38950.1	38.746	702	352	14	89	784	10	639	1.95e-149	459
Msa1115260	AT4G20400.1	42.832	565	307	5	192	756	38	586	6.81e-147	460
Msa1115260	AT1G30810.3	41.491	617	326	10	150	762	7	592	1.86e-145	452
Msa1115260	AT1G30810.2	41.491	617	326	10	150	762	7	592	1.86e-145	452
Msa1115260	AT1G30810.1	41.491	617	326	10	150	762	7	592	1.86e-145	452
Msa1115260	AT2G34880.1	41.068	599	311	14	166	755	15	580	1.78e-135	426

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Find 237 sgRNAs with CRISPR-Local

Find 639 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACCTATATTGCAGT+CGG	0.627731	7_3:-62698337	Msa1115260:CDS
AAAAGAACCTCATCAGGGAA+TGG	0.523565	7_3:+62707785	None:intergenic
AAAAGTACTTCAACTAATAA+TGG	0.231367	7_3:-62701153	Msa1115260:CDS
AAAATTACCAATTTAGTCAT+AGG	0.309535	7_3:+62703003	None:intergenic
AAAATTTCTGTGCAGCTTCA+GGG	0.440051	7_3:+62700635	None:intergenic
AAACCTGATAGCAAGGCAAT+TGG	0.421871	7_3:-62698054	Msa1115260:CDS
AAAGAACCTCATCAGGGAAT+GGG	0.503886	7_3:+62707786	None:intergenic
AAAGACAAGAAACGTGAGCC+TGG	0.484937	7_3:+62697967	None:intergenic
AAAGAGAAAGGTTATAGCCA+TGG	0.560705	7_3:-62707938	Msa1115260:CDS
AAAGATGCCTATCAAAGAAA+TGG	0.403031	7_3:-62699049	Msa1115260:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATGGAATGGATGGAAAAA+GGG	+	chr7_3:62697719-62697738	None:intergenic	30.0%
TTAATGGAATGGATGGAAAA+AGG	+	chr7_3:62697720-62697739	None:intergenic	30.0%
TCTGTATCAGTATTTCATAG+TGG	-	chr7_3:62698055-62698074	Msa1115260:CDS	30.0%
TGGATTCTGTCATTCAAATT+AGG	-	chr7_3:62698628-62698647	Msa1115260:CDS	30.0%
GGATTCTGTCATTCAAATTA+GGG	-	chr7_3:62698629-62698648	Msa1115260:CDS	30.0%
TCAATGAAATTCATAGCATG+TGG	-	chr7_3:62698868-62698887	Msa1115260:intron	30.0%
TTTCATCATCTTATCTCCTA+AGG	-	chr7_3:62699114-62699133	Msa1115260:CDS	30.0%
TAATAAGAGTCTGAAAGAGA+AGG	+	chr7_3:62699479-62699498	None:intergenic	30.0%
GAGACAATCAATGAAGTTAA+GGG	+	chr7_3:62699857-62699876	None:intergenic	30.0%
TGAGACAATCAATGAAGTTA+AGG	+	chr7_3:62699858-62699877	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	62697610	62707999	62697610	ID=Msa1115260;Name=Msa1115260
chr7_3	mRNA	62697610	62707999	62697610	ID=Msa1115260-mRNA-1;Parent=Msa1115260;Name=Msa1115260-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.77\|0.7\|0.9\|0.88\|0.9\|10\|296\|936
chr7_3	exon	62697610	62698751	62697610	ID=Msa1115260-mRNA-1:exon:14537;Parent=Msa1115260-mRNA-1
chr7_3	exon	62699027	62699395	62699027	ID=Msa1115260-mRNA-1:exon:14536;Parent=Msa1115260-mRNA-1
chr7_3	exon	62700313	62700483	62700313	ID=Msa1115260-mRNA-1:exon:14535;Parent=Msa1115260-mRNA-1
chr7_3	exon	62700591	62700821	62700591	ID=Msa1115260-mRNA-1:exon:14534;Parent=Msa1115260-mRNA-1
chr7_3	exon	62700921	62701460	62700921	ID=Msa1115260-mRNA-1:exon:14533;Parent=Msa1115260-mRNA-1
chr7_3	exon	62701641	62701718	62701641	ID=Msa1115260-mRNA-1:exon:14532;Parent=Msa1115260-mRNA-1
chr7_3	exon	62701803	62701874	62701803	ID=Msa1115260-mRNA-1:exon:14531;Parent=Msa1115260-mRNA-1
chr7_3	exon	62703011	62703238	62703011	ID=Msa1115260-mRNA-1:exon:14530;Parent=Msa1115260-mRNA-1
chr7_3	exon	62703890	62703958	62703890	ID=Msa1115260-mRNA-1:exon:14529;Parent=Msa1115260-mRNA-1
chr7_3	exon	62707793	62707999	62707793	ID=Msa1115260-mRNA-1:exon:14528;Parent=Msa1115260-mRNA-1
chr7_3	CDS	62707793	62707999	62707793	ID=Msa1115260-mRNA-1:cds;Parent=Msa1115260-mRNA-1
chr7_3	CDS	62703890	62703958	62703890	ID=Msa1115260-mRNA-1:cds;Parent=Msa1115260-mRNA-1
chr7_3	CDS	62703011	62703238	62703011	ID=Msa1115260-mRNA-1:cds;Parent=Msa1115260-mRNA-1
chr7_3	CDS	62701803	62701874	62701803	ID=Msa1115260-mRNA-1:cds;Parent=Msa1115260-mRNA-1
chr7_3	CDS	62701641	62701718	62701641	ID=Msa1115260-mRNA-1:cds;Parent=Msa1115260-mRNA-1
chr7_3	CDS	62700921	62701460	62700921	ID=Msa1115260-mRNA-1:cds;Parent=Msa1115260-mRNA-1
chr7_3	CDS	62700591	62700821	62700591	ID=Msa1115260-mRNA-1:cds;Parent=Msa1115260-mRNA-1
chr7_3	CDS	62700313	62700483	62700313	ID=Msa1115260-mRNA-1:cds;Parent=Msa1115260-mRNA-1
chr7_3	CDS	62699027	62699395	62699027	ID=Msa1115260-mRNA-1:cds;Parent=Msa1115260-mRNA-1
chr7_3	CDS	62697906	62698751	62697906	ID=Msa1115260-mRNA-1:cds;Parent=Msa1115260-mRNA-1
chr7_3	three_prime_UTR	62697610	62697905	62697610	ID=Msa1115260-mRNA-1:three_prime_utr;Parent=Msa1115260-mRNA-1

Gene Sequence

>Msa1115260

ATGGAAGATTCTCATCCTCTATTGAGAGGAGGTGGACGAAAAGAGAAAGGTTATAGCCATGGATTTTTAACCTCTCAGATGCATGTATTGGCTTCCATATGTGACACCCTTTTTCCATCCATTCCATTAAACAAAGAAGTCTCTCAAGATGAAAACCTCTCATCCTTCTATACAACTTCTGGTTCTCAGTTCCCATTCCCTGATGAGGGCAACGCCGCAGATAACCGCGTCGCAGCAGATCAGAGCTTCGCTTCTGCACCGACATTGACAACACAGAAGATGAGATTTTCCTCGATTCCGCCTGGTTTTGCATCCCTAACATCTTTTTATCTAAAAAAGGATGACAATGTTAAGTCGGACCCAATCCCCACATCGACTAAACCTGAGATGGATGGCAATACTTCTAATAAACAGATTTGTGCACTACGGCCATGGATAATATCCGACCAGAGCAAGTGTAAAACTGAGGAATCTCGCACTGAGCATCCTCCTATGACTAAATTGAAACCCCCTACAAAGTGTTCTCTTCCAAAAGGGACCAAATATGGATGTCCAAAATGCAGTAATTGTTTTAAGGTAACAGCAAGGTGGCGTCCTGAGGATGCAAGAAGAGAAGTTCTGGAAGAAGCTCCTATTTTCCGTCCAACAGAAGAGGAATTCAAAGACACGATTAACTATATCGCAAGCATACGTTCCGAAGCAGAACCTTATGGAATTTGCCGTATTGTCCCTCCTACTTGCTGGAAACCGCCATGTACTCTTGAAAAAAAGAATGTATGGGAAAATTCTGAATTTATTGCTCAAATTCAGCGAATTGATGGGCACCAAGTTCAGTATGCACCGGAAGTTATGACTAGCTCTCATGATACTACAGAAACCAAGAGAAGGAAAGTGATGAAAGTAGCCACGGACAAGGAGCCCGAGCCTGAGCCTGGTCCTAAAAGTACTTCAACTAATAATGGGAAGGTTAAAGACTGTGACAAGGAGCCTGAGCCTGGTCCTAAATTCAGTCTCAAAACTTTTAAGAAATTGGCAGATGAATTCAAGATCCAGTACTTCAACTATAAGGATAAGAATAAGATTATGGGTTCTGATAAAATTTCAGCCAGACATCAACAGCAATGGGAGCCATCTGTTGAGAATATTGAGGGTGAATACAGACGAATTGCTCAAAATCCAACTGATGAAATTGAGGTTCTCTGCTGTGACACTTTGGAGGCTGGAGATTTTAGCAGTGGATTTCCAATTCCAGCGATTTCTGATCCTCTGAAGGCATGCACTTATCCTGAATATTTGAAATCTGGATGGAACTTAAATAATATGCGTTCACTCCCAGGTTCCCTTCTTTCCTTTGAAAGCCCTGAAGCTGCACAGAAATTTTCCCCTAAGGTACAAGTGGGAATGTGCTTTTCACCACTCAGATGGAAAGTTGAAGAGCACCAATTATACTCATTATATTACATGCATTTGGGTGAACCCAAAGTATGGTATGGTGTCCCAGGAAGATGTTCTGTTGACTTTGAAACAATTTGGAAGAAGTATCTCGTTGGAGTGCGAGATATGTATGCAGTACAGCGAGATATGCATGATAATCTGGTTATGCAGTTATCCTGCTCAGTATTGAAGGGAGAGGGTATACCAGTGTATCGGTGTATTCAGTATCCTCGTGAGTTTGTTCTCGTCTTTCCTGGAACATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAGGCAGCAAGTTTTGCTCCTCTTGAGTGGTTGCTTCATGGACAGAATGTTGTAGACCTATATAGTGAACAGAAGAGAAAAACTTTAATTTCATACGACAAGCTGTTACTGGGAGCAGCTAGGGAAGCTGTGAGGACCCGATGGGAAACCGATATATGTATGAAGAGCACACCCGACAACATAACATGTAAAGATGCCTATCAAAGAAATGGAATCTTGACAAAAGCTTTTAATTCTCGTATCAGGAGTGAAAGTTTGAAGAGGAAATTTATTTCCACTTCTTTGAAGTCACAAAAGATGGATGAAAACTTCACTGCCAGTTGTAAAAGGGAATGTAGCGTATGTCTGCGTGATTTATTCCTGTCTGCTGTTGGTTGTCCGTGCTCCGATGACAAGTTTGTGTGTCTTGATCATGCAAAACAGCTTTGTTCTTGTCCTTGGACAGGCAGAATTCTCCTTTACCGTTATGAAATCAGTGAATTGGAGGTTCTTCATCAAGCTTTGGATGGAAAACTAAGTGCAGTCTATAAATGGGCCAAAGAAGATCTTGGTTTAACTGTGCGCCCAGTTGCCTCCCAGAAATCAAAACAAACCCCAGAAAAAGTAAATGATTCAGAAGACTCGATAAAAGAACCTATATTGCAGTCGGCGCGCGATGCATACAACAAGTGGAAACAGCGTAAATCGCAGGGAACACCAAATTCTTTGGTGGAGAAACAGAGTGAAATGGCCTCCCAAGCCAAGCGGATCCCTAGTAGTACTCACAGTAGTCCGTACGCCATTCACCCAAAAAAGAACACAACTTTACTTCATTCAGCAATATCAAATGAGGTCAAAGCTAAAGAGAAAATGGTGGGGCCCAAATCTGCTGCAACAAGCATTGGTAAAGGAAGTAATTCTGCTGGGATCAAACCTGATAGCAAGGCAATTGGGGATAAGCTCACAATTTCAAAGAAAGTAGGAGACCCAAAAGTTTCTGAAGTTTCTTCATCAACTCCAGGCTCACGTTTCTTGTCTTTACTACAAGAGAACATTTGGATTGATGTTTCATCTAGTTCTTCAGAATCCGATGAGGACTAG

Protein sequence

>Msa1115260

MEDSHPLLRGGGRKEKGYSHGFLTSQMHVLASICDTLFPSIPLNKEVSQDENLSSFYTTSGSQFPFPDEGNAADNRVAADQSFASAPTLTTQKMRFSSIPPGFASLTSFYLKKDDNVKSDPIPTSTKPEMDGNTSNKQICALRPWIISDQSKCKTEESRTEHPPMTKLKPPTKCSLPKGTKYGCPKCSNCFKVTARWRPEDARREVLEEAPIFRPTEEEFKDTINYIASIRSEAEPYGICRIVPPTCWKPPCTLEKKNVWENSEFIAQIQRIDGHQVQYAPEVMTSSHDTTETKRRKVMKVATDKEPEPEPGPKSTSTNNGKVKDCDKEPEPGPKFSLKTFKKLADEFKIQYFNYKDKNKIMGSDKISARHQQQWEPSVENIEGEYRRIAQNPTDEIEVLCCDTLEAGDFSSGFPIPAISDPLKACTYPEYLKSGWNLNNMRSLPGSLLSFESPEAAQKFSPKVQVGMCFSPLRWKVEEHQLYSLYYMHLGEPKVWYGVPGRCSVDFETIWKKYLVGVRDMYAVQRDMHDNLVMQLSCSVLKGEGIPVYRCIQYPREFVLVFPGTYHSGFDCGFNCSEAASFAPLEWLLHGQNVVDLYSEQKRKTLISYDKLLLGAAREAVRTRWETDICMKSTPDNITCKDAYQRNGILTKAFNSRIRSESLKRKFISTSLKSQKMDENFTASCKRECSVCLRDLFLSAVGCPCSDDKFVCLDHAKQLCSCPWTGRILLYRYEISELEVLHQALDGKLSAVYKWAKEDLGLTVRPVASQKSKQTPEKVNDSEDSIKEPILQSARDAYNKWKQRKSQGTPNSLVEKQSEMASQAKRIPSSTHSSPYAIHPKKNTTLLHSAISNEVKAKEKMVGPKSAATSIGKGSNSAGIKPDSKAIGDKLTISKKVGDPKVSEVSSSTPGSRFLSLLQENIWIDVSSSSSESDED*