AlfalfaGEDB | Msa1116570

M. sativa cultivar zhongmu-4 / Msa1116570

KEGG: -
GO: GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0044706 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060089 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1116570	XP_024625466.1	97.561	369	8	1	1	369	1	368	0.0	744

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1116570	sp\|P93749\|Y2197_ARATH	80.593	371	64	5	1	369	1	365	0.0	588

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1116570	A0A396H3Y2	97.561	369	8	1	1	369	1	368	0.0	744

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1116570	MtrunA17_Chr7g0258951	97.561	369	8	1	1	369	1	368	0.0	744
Msa1116570	MtrunA17_Chr1g0175731	81.183	372	67	2	1	369	1	372	0.0	574
Msa1116570	MtrunA17_Chr1g0213501	67.486	366	111	3	2	367	46	403	9.19e-177	497
Msa1116570	MtrunA17_Chr1g0194101	64.690	371	118	4	1	368	1	361	2.98e-166	469
Msa1116570	MtrunA17_Chr4g0069241	69.967	303	88	1	57	359	50	349	3.08e-153	436
Msa1116570	MtrunA17_Chr3g0084191	57.187	327	110	5	41	366	200	497	3.40e-123	364
Msa1116570	MtrunA17_Chr0c20g0493811	59.109	247	60	2	122	359	29	243	5.43e-96	287
Msa1116570	MtrunA17_Chr2g0289161	43.692	325	170	4	42	358	380	699	7.09e-85	272
Msa1116570	MtrunA17_Chr7g0262521	46.205	303	155	4	58	359	329	624	3.03e-84	271
Msa1116570	MtrunA17_Chr7g0270121	45.597	318	163	5	41	355	346	656	3.34e-83	267

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1116570	AT2G41970.1	80.593	371	64	5	1	369	1	365	0.0	588
Msa1116570	AT3G59350.2	65.289	363	118	3	2	364	5	359	3.58e-168	474
Msa1116570	AT2G30740.5	64.543	361	112	5	2	358	5	353	5.08e-168	474
Msa1116570	AT2G30740.2	64.543	361	112	5	2	358	5	353	5.08e-168	474
Msa1116570	AT2G30740.10	64.543	361	112	5	2	358	5	353	5.08e-168	474
Msa1116570	AT2G30740.11	64.543	361	112	5	2	358	5	353	5.08e-168	474
Msa1116570	AT2G30740.6	64.543	361	112	5	2	358	5	353	5.08e-168	474
Msa1116570	AT2G30740.15	64.543	361	112	5	2	358	5	353	5.08e-168	474
Msa1116570	AT2G30740.4	64.543	361	112	5	2	358	5	353	5.08e-168	474
Msa1116570	AT2G30740.14	64.543	361	112	5	2	358	5	353	5.08e-168	474

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Find 91 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTTTATAGTTT+TGG	0.205463	7_3:-64249482	Msa1116570:CDS
AAACCTTAGCAATTGCCTTT+GGG	0.341988	7_3:+64249195	None:intergenic
AACAGGAAACTTTGGTTCAA+AGG	0.456129	7_3:-64250667	Msa1116570:CDS
AACCTTAGCAATTGCCTTTG+GGG	0.525433	7_3:+64249196	None:intergenic
AACTCAGCCAACGATATGGA+GGG	0.647410	7_3:+64250699	None:intergenic
AAGTCGTTGGAGTCAGAATC+AGG	0.418607	7_3:+64250549	None:intergenic
AATACGCTGCACCATCAAGA+GGG	0.602640	7_3:-64251084	Msa1116570:CDS
AATAGATTAACAGGAAACTT+TGG	0.423697	7_3:-64250675	Msa1116570:CDS
AATGCATATGGCGGCGGCGG+CGG	0.378432	7_3:-64251058	Msa1116570:CDS
ACAAGACTTTGTTGCCCTTT+AGG	0.278654	7_3:+64249407	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATTGCCTATATTCATACA+AGG	+	chr7_3:64248572-64248591	None:intergenic	30.0%
ATGAATATAGGCAATGATAG+AGG	-	chr7_3:64248575-64248594	Msa1116570:intron	30.0%
GCTGAGTTAAATAGATTAAC+AGG	-	chr7_3:64248674-64248693	Msa1116570:intron	30.0%
GTATTGAAGTTGCAATCAAA+AGG	-	chr7_3:64248768-64248787	Msa1116570:intron	30.0%
GGTTTATCAATATGCAAGTT+TGG	-	chr7_3:64249005-64249024	Msa1116570:intron	30.0%
TCTTTGCATGATGTATTACA+TGG	-	chr7_3:64249030-64249049	Msa1116570:intron	30.0%
ATGTGAATCTCACATAAAGT+TGG	+	chr7_3:64249152-64249171	None:intergenic	30.0%
ATTGAATAACAAGACATTGC+TGG	+	chr7_3:64249456-64249475	None:intergenic	30.0%
CTGAAGTTTAATGAGCTAAT+TGG	-	chr7_3:64250010-64250029	Msa1116570:CDS	30.0%
ATTTGTACAAACGAGTGAAT+AGG	-	chr7_3:64250313-64250332	Msa1116570:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	64248222	64251158	64248222	ID=Msa1116570;Name=Msa1116570
chr7_3	mRNA	64248222	64251158	64248222	ID=Msa1116570-mRNA-1;Parent=Msa1116570;Name=Msa1116570-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0\|0\|1\|1\|1\|7\|0\|369
chr7_3	exon	64251053	64251158	64251053	ID=Msa1116570-mRNA-1:exon:15229;Parent=Msa1116570-mRNA-1
chr7_3	exon	64250539	64250795	64250539	ID=Msa1116570-mRNA-1:exon:15228;Parent=Msa1116570-mRNA-1
chr7_3	exon	64250329	64250455	64250329	ID=Msa1116570-mRNA-1:exon:15227;Parent=Msa1116570-mRNA-1
chr7_3	exon	64249795	64250068	64249795	ID=Msa1116570-mRNA-1:exon:15226;Parent=Msa1116570-mRNA-1
chr7_3	exon	64249400	64249532	64249400	ID=Msa1116570-mRNA-1:exon:15225;Parent=Msa1116570-mRNA-1
chr7_3	exon	64249199	64249285	64249199	ID=Msa1116570-mRNA-1:exon:15224;Parent=Msa1116570-mRNA-1
chr7_3	exon	64248222	64248347	64248222	ID=Msa1116570-mRNA-1:exon:15223;Parent=Msa1116570-mRNA-1
chr7_3	CDS	64251053	64251158	64251053	ID=Msa1116570-mRNA-1:cds;Parent=Msa1116570-mRNA-1
chr7_3	CDS	64250539	64250795	64250539	ID=Msa1116570-mRNA-1:cds;Parent=Msa1116570-mRNA-1
chr7_3	CDS	64250329	64250455	64250329	ID=Msa1116570-mRNA-1:cds;Parent=Msa1116570-mRNA-1
chr7_3	CDS	64249795	64250068	64249795	ID=Msa1116570-mRNA-1:cds;Parent=Msa1116570-mRNA-1
chr7_3	CDS	64249400	64249532	64249400	ID=Msa1116570-mRNA-1:cds;Parent=Msa1116570-mRNA-1
chr7_3	CDS	64249199	64249285	64249199	ID=Msa1116570-mRNA-1:cds;Parent=Msa1116570-mRNA-1
chr7_3	CDS	64248222	64248347	64248222	ID=Msa1116570-mRNA-1:cds;Parent=Msa1116570-mRNA-1

Gene Sequence

>Msa1116570

ATGTTGTGTTGCGGAGGTGCAGAAGAAGATACCAGCGGTCCACCTTCAAACCAATACGCTGCACCATCAAGAGGGGGTAATGCATATGGCGGCGGCGGCGGTGGAGGCAATGATAGAGGAGAGCCAAGGAGCAACATTACCAAGAGTGGTGGTCCACAGAAAGTATTACCAATTGAGATACCCTCCATATCGTTGGCTGAGTTAAATAGATTAACAGGAAACTTTGGTTCAAAGGCCTTCATTGGTGAAGGTTCGTATGGAAGGGTTTACTATGCAAAAATGAATGATGGTATTGAAGTTGCAATCAAAAGGCTGGATACAAGTTCTTCGCCTGATTCTGACTCCAACGACTTCGCTGCTCAGTTATCAGTTGTTTCAAGACTCAAGCATGACAATTTTGTAGAGTTGACTGGATATTGTCTAGAAGCAGACAACAGAATTTTGGTTTATCAATATGCAAGTTTGGGTTCTTTGCATGATGTATTACATGGAAGGAAGGGTGTACAAGGTGCCGAACCTGGTCCAGTTTTAAGCTGGAACCAGAGAGCGAAAATTGCATTTGGTGCGGCAAAAGGCCTAGAGTTTCTTCATGAAAAGGTTCAGCCTTCTATAGTTCACCGCGATGTTCGATCCAGCAATGTCTTGTTATTCAATGACTATGAGGCCAAGATTGCTGATTTCAGCTTGACAAATCAGTCTTCAGATACGGCAGCTCGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCAGAGTATGCAATGACAGGGCAGATAACACAAAAAAGTGATGTTTATAGTTTTGGAGTTGTGCTTTTAGAACTCTTGACTGGAAGAAAGCCAGTAGACCACACAATGCCTAAAGGGCAACAAAGTCTTGTGACTTGGGCAACTCCAAGGTTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAATGACTACCCCCCAAAGGCAATTGCTAAGTTGGCAGCTGTTGCAGCACTGTGCGTGCAATATGAAGCTGATTTCCGGCCAAACATGACAATTGTTGTCAAAGCTCTCCAGCCACTTCTCAATGCAAAACCGGCTGGTCCTGACTCTAATGCTTGA

Protein sequence

>Msa1116570

MLCCGGAEEDTSGPPSNQYAAPSRGGNAYGGGGGGGNDRGEPRSNITKSGGPQKVLPIEIPSISLAELNRLTGNFGSKAFIGEGSYGRVYYAKMNDGIEVAIKRLDTSSSPDSDSNDFAAQLSVVSRLKHDNFVELTGYCLEADNRILVYQYASLGSLHDVLHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPAGPDSNA*