Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1117300 | KEH23781.1 | 79.946 | 369 | 61 | 3 | 1 | 359 | 1 | 366 | 0.0 | 610 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1117300 | sp|F4IXE7|IDM1_ARATH | 36.893 | 309 | 171 | 5 | 11 | 297 | 723 | 1029 | 5.58e-58 | 206 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1117300 | A0A072U345 | 79.946 | 369 | 61 | 3 | 1 | 359 | 1 | 366 | 0.0 | 610 |
Gene ID | Type | Classification |
---|---|---|
Msa1117300 | TR | PHD |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1117300 | MtrunA17_Chr7g0259981 | 81.169 | 308 | 53 | 2 | 1 | 305 | 1 | 306 | 0.0 | 531 |
Msa1117300 | MtrunA17_Chr1g0185491 | 47.024 | 336 | 148 | 7 | 10 | 317 | 913 | 1246 | 3.77e-97 | 315 |
Msa1117300 | MtrunA17_Chr1g0205451 | 38.762 | 307 | 158 | 4 | 11 | 289 | 706 | 1010 | 1.70e-69 | 236 |
Msa1117300 | MtrunA17_Chr2g0316251 | 35.714 | 308 | 172 | 5 | 8 | 291 | 861 | 1166 | 5.79e-60 | 209 |
Msa1117300 | MtrunA17_Chr5g0430361 | 34.375 | 320 | 182 | 8 | 8 | 302 | 752 | 1068 | 6.56e-56 | 197 |
Msa1117300 | MtrunA17_Chr3g0105291 | 31.915 | 329 | 193 | 9 | 13 | 316 | 707 | 1029 | 1.42e-52 | 187 |
Msa1117300 | MtrunA17_Chr5g0407211 | 33.935 | 277 | 161 | 6 | 13 | 271 | 125 | 397 | 4.10e-47 | 165 |
Msa1117300 | MtrunA17_Chr5g0407251 | 33.213 | 277 | 163 | 6 | 13 | 271 | 125 | 397 | 8.02e-46 | 162 |
Msa1117300 | MtrunA17_Chr3g0134811 | 30.619 | 307 | 189 | 6 | 13 | 297 | 493 | 797 | 1.96e-41 | 154 |
Msa1117300 | MtrunA17_Chr7g0270101 | 32.526 | 289 | 161 | 7 | 13 | 271 | 481 | 765 | 5.08e-41 | 153 |
Msa1117300 | MtrunA17_Chr3g0134821 | 30.844 | 308 | 169 | 7 | 13 | 288 | 526 | 821 | 4.97e-39 | 147 |
Msa1117300 | MtrunA17_Chr1g0182481 | 25.706 | 354 | 177 | 12 | 13 | 292 | 553 | 894 | 3.25e-25 | 107 |
Msa1117300 | MtrunA17_Chr3g0134851 | 28.520 | 277 | 141 | 8 | 13 | 271 | 205 | 442 | 1.14e-23 | 101 |
Msa1117300 | MtrunA17_Chr1g0179841 | 27.687 | 307 | 177 | 12 | 7 | 293 | 523 | 804 | 1.23e-21 | 96.7 |
Msa1117300 | MtrunA17_Chr7g0265211 | 25.566 | 309 | 177 | 12 | 7 | 291 | 668 | 947 | 7.03e-21 | 94.4 |
Msa1117300 | MtrunA17_Chr4g0028111 | 21.471 | 340 | 177 | 11 | 13 | 266 | 227 | 562 | 1.42e-16 | 81.3 |
Msa1117300 | MtrunA17_Chr4g0027811 | 22.414 | 348 | 173 | 10 | 6 | 291 | 266 | 578 | 3.57e-16 | 79.7 |
Msa1117300 | MtrunA17_Chr2g0320451 | 29.221 | 154 | 100 | 4 | 141 | 291 | 876 | 1023 | 2.16e-14 | 74.7 |
Msa1117300 | MtrunA17_Chr2g0320451 | 47.917 | 48 | 25 | 0 | 13 | 60 | 557 | 604 | 1.33e-11 | 66.2 |
Msa1117300 | MtrunA17_Chr4g0025251 | 23.715 | 253 | 144 | 9 | 79 | 291 | 458 | 701 | 3.54e-13 | 70.9 |
Msa1117300 | MtrunA17_Chr4g0038871 | 55.102 | 49 | 20 | 1 | 11 | 57 | 696 | 744 | 6.21e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1117300 | AT5G36740.5 | 41.613 | 310 | 155 | 7 | 11 | 296 | 647 | 954 | 5.65e-78 | 260 |
Msa1117300 | AT5G36740.1 | 41.613 | 310 | 155 | 7 | 11 | 296 | 647 | 954 | 5.65e-78 | 260 |
Msa1117300 | AT5G36740.4 | 40.000 | 320 | 156 | 6 | 11 | 296 | 494 | 811 | 6.22e-76 | 253 |
Msa1117300 | AT1G05380.3 | 38.907 | 311 | 159 | 7 | 16 | 301 | 627 | 931 | 1.26e-70 | 239 |
Msa1117300 | AT1G05380.1 | 38.907 | 311 | 159 | 7 | 16 | 301 | 627 | 931 | 1.26e-70 | 239 |
Msa1117300 | AT1G05380.2 | 38.907 | 311 | 159 | 7 | 16 | 301 | 627 | 931 | 1.26e-70 | 239 |
Msa1117300 | AT4G14920.2 | 38.436 | 307 | 164 | 7 | 8 | 291 | 679 | 983 | 3.67e-69 | 235 |
Msa1117300 | AT4G14920.1 | 38.436 | 307 | 164 | 7 | 8 | 291 | 679 | 983 | 3.67e-69 | 235 |
Msa1117300 | AT4G14920.3 | 38.436 | 307 | 164 | 7 | 8 | 291 | 679 | 983 | 3.76e-69 | 235 |
Msa1117300 | AT5G36670.4 | 38.344 | 326 | 157 | 9 | 11 | 296 | 647 | 968 | 6.49e-68 | 231 |
Msa1117300 | AT5G36670.5 | 38.344 | 326 | 157 | 9 | 11 | 296 | 647 | 968 | 6.49e-68 | 231 |
Msa1117300 | AT5G36670.3 | 36.905 | 336 | 158 | 8 | 11 | 296 | 494 | 825 | 8.38e-66 | 225 |
Msa1117300 | AT5G36670.1 | 36.905 | 336 | 158 | 8 | 11 | 296 | 647 | 978 | 1.30e-65 | 225 |
Msa1117300 | AT5G36670.2 | 42.972 | 249 | 116 | 7 | 11 | 235 | 647 | 893 | 3.19e-62 | 214 |
Msa1117300 | AT5G36740.2 | 42.972 | 249 | 116 | 7 | 11 | 235 | 647 | 893 | 3.19e-62 | 214 |
Msa1117300 | AT5G36740.3 | 42.972 | 249 | 116 | 7 | 11 | 235 | 647 | 893 | 3.19e-62 | 214 |
Msa1117300 | AT3G14980.5 | 36.893 | 309 | 171 | 5 | 11 | 297 | 678 | 984 | 5.13e-59 | 206 |
Msa1117300 | AT3G14980.6 | 36.893 | 309 | 171 | 5 | 11 | 297 | 723 | 1029 | 5.67e-59 | 206 |
Msa1117300 | AT3G14980.1 | 36.893 | 309 | 171 | 5 | 11 | 297 | 723 | 1029 | 5.67e-59 | 206 |
Msa1117300 | AT3G14980.2 | 36.893 | 309 | 171 | 5 | 11 | 297 | 723 | 1029 | 5.67e-59 | 206 |
Msa1117300 | AT3G14980.3 | 36.893 | 309 | 171 | 5 | 11 | 297 | 723 | 1029 | 6.06e-59 | 206 |
Msa1117300 | AT5G58610.4 | 35.556 | 315 | 166 | 10 | 2 | 286 | 460 | 767 | 4.29e-51 | 182 |
Msa1117300 | AT5G58610.3 | 35.556 | 315 | 166 | 10 | 2 | 286 | 691 | 998 | 1.19e-50 | 182 |
Msa1117300 | AT5G58610.8 | 35.556 | 315 | 166 | 10 | 2 | 286 | 691 | 998 | 1.44e-50 | 181 |
Msa1117300 | AT5G58610.2 | 35.556 | 315 | 166 | 10 | 2 | 286 | 691 | 998 | 1.44e-50 | 181 |
Msa1117300 | AT5G58610.5 | 35.556 | 315 | 166 | 10 | 2 | 286 | 682 | 989 | 1.53e-50 | 182 |
Msa1117300 | AT5G58610.6 | 37.458 | 299 | 156 | 9 | 2 | 286 | 682 | 963 | 1.57e-50 | 181 |
Msa1117300 | AT5G58610.1 | 37.458 | 299 | 156 | 9 | 2 | 286 | 682 | 963 | 1.75e-50 | 181 |
Msa1117300 | AT5G58610.7 | 35.556 | 315 | 166 | 10 | 2 | 286 | 682 | 989 | 1.81e-50 | 181 |
Msa1117300 | AT5G58610.10 | 33.582 | 268 | 146 | 8 | 2 | 239 | 691 | 956 | 1.60e-39 | 149 |
Msa1117300 | AT5G58610.9 | 33.582 | 268 | 146 | 8 | 2 | 239 | 682 | 947 | 1.87e-39 | 149 |
Msa1117300 | AT5G63900.1 | 31.613 | 310 | 188 | 11 | 11 | 302 | 253 | 556 | 4.12e-36 | 138 |
Msa1117300 | AT2G36720.1 | 25.668 | 374 | 189 | 10 | 13 | 301 | 614 | 983 | 9.49e-34 | 132 |
Msa1117300 | AT2G36720.2 | 25.668 | 374 | 189 | 10 | 13 | 301 | 614 | 983 | 9.49e-34 | 132 |
Msa1117300 | AT3G14980.4 | 35.981 | 214 | 113 | 5 | 11 | 202 | 723 | 934 | 6.49e-33 | 130 |
Msa1117300 | AT2G37520.1 | 27.528 | 356 | 178 | 11 | 13 | 293 | 467 | 817 | 9.66e-33 | 129 |
Msa1117300 | AT3G53680.1 | 26.257 | 358 | 182 | 12 | 13 | 295 | 485 | 835 | 5.89e-28 | 115 |
Msa1117300 | AT3G53680.2 | 26.257 | 358 | 182 | 12 | 13 | 295 | 487 | 837 | 6.24e-28 | 115 |
Msa1117300 | AT5G58610.11 | 30.435 | 230 | 128 | 8 | 2 | 201 | 682 | 909 | 1.05e-24 | 106 |
Msa1117300 | AT2G27980.1 | 26.950 | 282 | 161 | 9 | 26 | 291 | 805 | 1057 | 7.68e-22 | 97.8 |
Find 66 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTGCAGAGATGCCATTTAT+TGG | 0.215394 | 7_3:+65609373 | Msa1117300:CDS |
CACACTTGGACTTCCTCTTT+TGG | 0.216281 | 7_3:+65609747 | Msa1117300:CDS |
CCAATGGCTACTTAGAATTC+TGG | 0.217920 | 7_3:-65608067 | None:intergenic |
CTAACTCGTGTTCCAATAAA+TGG | 0.259990 | 7_3:-65609385 | None:intergenic |
TTGGAACACGAGTTAGGTTT+AGG | 0.320138 | 7_3:+65609392 | Msa1117300:CDS |
AAACCCATTACTTTGGATCT+TGG | 0.343252 | 7_3:+65608021 | Msa1117300:CDS |
AATTGGTGAAATAGGATTCA+TGG | 0.360966 | 7_3:+65609343 | Msa1117300:intron |
CACCGCATGCATCCTCATTA+AGG | 0.362137 | 7_3:-65606542 | None:intergenic |
TTTACTGTATTTCTAGAGAA+AGG | 0.371214 | 7_3:+65609205 | Msa1117300:CDS |
GGAAGTGAAAATCCCGCTAT+TGG | 0.378386 | 7_3:+65607207 | Msa1117300:CDS |
CATTTATTGGAACACGAGTT+AGG | 0.385764 | 7_3:+65609386 | Msa1117300:CDS |
ATTGTCAGTGGAAGAACTTC+AGG | 0.387079 | 7_3:+65610223 | Msa1117300:CDS |
CAATGGCTACTTAGAATTCT+GGG | 0.405998 | 7_3:-65608066 | None:intergenic |
CGCTACAAGTGTTACACACT+TGG | 0.417196 | 7_3:+65609733 | Msa1117300:CDS |
CGAGCTCCTCGTAATTCATA+TGG | 0.419830 | 7_3:-65610265 | None:intergenic |
TTACTGTATTTCTAGAGAAA+GGG | 0.425474 | 7_3:+65609206 | Msa1117300:CDS |
CCTCCAAGATCCAAAGTAAT+GGG | 0.432064 | 7_3:-65608024 | None:intergenic |
AGAGAAAGTTTATCAACAAT+CGG | 0.432642 | 7_3:-65610317 | None:intergenic |
CCCATTACTTTGGATCTTGG+AGG | 0.440114 | 7_3:+65608024 | Msa1117300:CDS |
AGGCACAAACTTTAATATTG+AGG | 0.444068 | 7_3:-65606629 | None:intergenic |
AGGAGCTTCCAGCAGGTGAC+TGG | 0.452037 | 7_3:+65607139 | Msa1117300:intron |
CAATCTGTGTTGCTACTCTC+AGG | 0.469065 | 7_3:+65609236 | Msa1117300:CDS |
GGATCTTGGAGGTGAGAAGA+TGG | 0.471084 | 7_3:+65608035 | Msa1117300:CDS |
CAAGACTCAGAAAGCTATCA+AGG | 0.471221 | 7_3:+65610174 | Msa1117300:CDS |
TCCTTGCAGGAGCTTCCAGC+AGG | 0.473548 | 7_3:+65607132 | Msa1117300:intron |
CAAAATCTCACTTTCAATCA+AGG | 0.485189 | 7_3:+65609882 | Msa1117300:CDS |
GTTTGTACTCACCGACTCAA+TGG | 0.485586 | 7_3:-65609446 | None:intergenic |
TCCCGTGCTGTTGATTATGC+CGG | 0.486765 | 7_3:+65609178 | Msa1117300:CDS |
ATTAGATATGACATTGGAGA+TGG | 0.495343 | 7_3:+65607916 | Msa1117300:CDS |
ATGCAGTGCCAGTCACCTGC+TGG | 0.507073 | 7_3:-65607147 | None:intergenic |
TTTGCGTAGATTACATGAAG+TGG | 0.508611 | 7_3:+65607954 | Msa1117300:CDS |
AGAGGTTTGAAATGCTTCTA+CGG | 0.513143 | 7_3:+65607893 | Msa1117300:CDS |
CAACTTTGATGAAATACTGC+TGG | 0.514841 | 7_3:-65606606 | None:intergenic |
ACCTCCAAGATCCAAAGTAA+TGG | 0.516234 | 7_3:-65608025 | None:intergenic |
CGAGTTAGGTTTAGGAAACA+AGG | 0.521835 | 7_3:+65609400 | Msa1117300:CDS |
AGGTCTTTAAACACTCTTTG+AGG | 0.524105 | 7_3:-65606522 | None:intergenic |
ACATGAAGTGGAAAACAAGA+AGG | 0.524527 | 7_3:+65607966 | Msa1117300:CDS |
CCAGAATTCTAAGTAGCCAT+TGG | 0.533832 | 7_3:+65608067 | Msa1117300:CDS |
GAGAAAGTTTATCAACAATC+GGG | 0.534292 | 7_3:-65610316 | None:intergenic |
AGCTTTCTCAAATCCAAAAG+AGG | 0.538189 | 7_3:-65609760 | None:intergenic |
CTATATGAATGTGGAGATGC+TGG | 0.542228 | 7_3:+65609698 | Msa1117300:CDS |
TACTGTATTTCTAGAGAAAG+GGG | 0.544754 | 7_3:+65609207 | Msa1117300:CDS |
ACGATTGAACTCATCACCGT+TGG | 0.545711 | 7_3:-65607554 | None:intergenic |
TTACGAGGAGCTCGTGAGAG+AGG | 0.547515 | 7_3:+65610274 | Msa1117300:CDS |
TACGAGGAGCTCGTGAGAGA+GGG | 0.549642 | 7_3:+65610275 | Msa1117300:CDS |
AGTGTTTAAAGACCTTAATG+AGG | 0.560861 | 7_3:+65606530 | Msa1117300:CDS |
GCATGCGGTGTTTGTAAAGA+CGG | 0.564702 | 7_3:+65606555 | Msa1117300:CDS |
TGTAACACTTGTAGCGCTGA+TGG | 0.581027 | 7_3:-65609726 | None:intergenic |
CTGAAGACACATCCAATAGC+GGG | 0.584552 | 7_3:-65607219 | None:intergenic |
CAATGGCATTGAAAAGTCTA+CGG | 0.587830 | 7_3:-65609429 | None:intergenic |
CTACGGATTAGATATGACAT+TGG | 0.591647 | 7_3:+65607910 | Msa1117300:CDS |
TCCGGCATAATCAACAGCAC+GGG | 0.592499 | 7_3:-65609179 | None:intergenic |
ATCCGGCATAATCAACAGCA+CGG | 0.595394 | 7_3:-65609180 | None:intergenic |
TTCAATCGTGAAAAGTTCTG+TGG | 0.597157 | 7_3:+65607568 | Msa1117300:CDS |
GGCATTAAGCTATATGAATG+TGG | 0.599720 | 7_3:+65609689 | Msa1117300:intron |
AGAGAGTCTTGTATTGTCAG+TGG | 0.611720 | 7_3:+65610211 | Msa1117300:CDS |
CATGAAGTGGAAAACAAGAA+GGG | 0.614500 | 7_3:+65607967 | Msa1117300:CDS |
AATGGCTACTTAGAATTCTG+GGG | 0.631109 | 7_3:-65608065 | None:intergenic |
TGTGGTGCAATTCTATGGAG+TGG | 0.632201 | 7_3:+65609818 | Msa1117300:CDS |
TGTGTTTCCAGATACATCAG+AGG | 0.640085 | 7_3:+65607875 | Msa1117300:intron |
TGCGGTGTTTGTAAAGACGG+AGG | 0.684277 | 7_3:+65606558 | Msa1117300:CDS |
GTCAATTGTGTTGATGCCAA+CGG | 0.685380 | 7_3:+65607538 | Msa1117300:CDS |
ACTGAAGACACATCCAATAG+CGG | 0.687331 | 7_3:-65607220 | None:intergenic |
GACCTTAATGAGGATGCATG+CGG | 0.693617 | 7_3:+65606540 | Msa1117300:CDS |
AGAAAGCTATCAAGGAAGAG+CGG | 0.699589 | 7_3:+65610182 | Msa1117300:CDS |
AGTTCTCCATATGAATTACG+AGG | 0.736915 | 7_3:+65610259 | Msa1117300:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTATTTTTATTTAATTT+AGG | + | chr7_3:65609505-65609524 | Msa1117300:intron | 0.0% |
!!! | TTTTATTTTTATTTAATTTA+GGG | + | chr7_3:65609506-65609525 | Msa1117300:intron | 0.0% |
!! | TTAAGTATTAATTTATCATT+AGG | - | chr7_3:65606954-65606973 | None:intergenic | 10.0% |
!!! | ATACTAATTTAACTTAATTT+TGG | + | chr7_3:65606993-65607012 | Msa1117300:intron | 10.0% |
!!! | TACTAATTTAACTTAATTTT+GGG | + | chr7_3:65606994-65607013 | Msa1117300:intron | 10.0% |
!! | TAAAGTCTATTTAATTAAAT+AGG | - | chr7_3:65608621-65608640 | None:intergenic | 10.0% |
!! | TTATCTAATAAAATAGTTAT+CGG | - | chr7_3:65608918-65608937 | None:intergenic | 10.0% |
!!! | AAGTTTATTTTCATTATTTG+AGG | + | chr7_3:65606701-65606720 | Msa1117300:intron | 15.0% |
!! | AAAAATAAATCAATACAAAC+AGG | + | chr7_3:65606851-65606870 | Msa1117300:intron | 15.0% |
!! | AGTTAAATTATTTCAATATG+TGG | - | chr7_3:65607068-65607087 | None:intergenic | 15.0% |
!!! | AAGTTTTGTTTATTTTTGAT+GGG | - | chr7_3:65607360-65607379 | None:intergenic | 15.0% |
!!! | AAAGTTTTGTTTATTTTTGA+TGG | - | chr7_3:65607361-65607380 | None:intergenic | 15.0% |
!! | ATATTCAACAATATCAATAA+TGG | + | chr7_3:65608515-65608534 | Msa1117300:intron | 15.0% |
!!! | AGATATTTTGAATAAGTTTA+TGG | + | chr7_3:65608939-65608958 | Msa1117300:intron | 15.0% |
!! | TATATTTAGAAACTTCTTAA+TGG | - | chr7_3:65608965-65608984 | None:intergenic | 15.0% |
!! | TGCTGTAAAAAAAATTTAAA+TGG | - | chr7_3:65608991-65609010 | None:intergenic | 15.0% |
!! | GTCGAAAAATATATTAATTA+TGG | + | chr7_3:65609312-65609331 | Msa1117300:intron | 15.0% |
!! | TAATTATGGAGTTTATTAAT+TGG | + | chr7_3:65609326-65609345 | Msa1117300:intron | 15.0% |
!!! | TTTTTTTAAGTAGAGTAAAA+AGG | - | chr7_3:65609627-65609646 | None:intergenic | 15.0% |
!!! | TATACTTTTCTATTTTCTTT+TGG | - | chr7_3:65609851-65609870 | None:intergenic | 15.0% |
!! | AAAAAATAAACCAATCCAAA+TGG | - | chr7_3:65606727-65606746 | None:intergenic | 20.0% |
!! | TCATTATATGTTAATGACAT+TGG | + | chr7_3:65606925-65606944 | Msa1117300:intron | 20.0% |
!! | TATTCAGTTAATTAATGAAG+AGG | - | chr7_3:65607309-65607328 | None:intergenic | 20.0% |
!!! | AGTTTTGTTTATTTTTGATG+GGG | - | chr7_3:65607359-65607378 | None:intergenic | 20.0% |
!! | ACTATAGTTATAAAAAAGAG+TGG | - | chr7_3:65608098-65608117 | None:intergenic | 20.0% |
!! | AAAAATTATATGTTTGAGTC+TGG | + | chr7_3:65608292-65608311 | Msa1117300:intron | 20.0% |
!!! | TCATAAGATTTTTAATAGCA+GGG | - | chr7_3:65608424-65608443 | None:intergenic | 20.0% |
!!! | TTCATAAGATTTTTAATAGC+AGG | - | chr7_3:65608425-65608444 | None:intergenic | 20.0% |
!! | TTATTTAGTAGCTGATATAT+TGG | - | chr7_3:65608460-65608479 | None:intergenic | 20.0% |
!! | TAAATAACCAAATCATAAGA+AGG | + | chr7_3:65608473-65608492 | Msa1117300:intron | 20.0% |
!! | AAAGATATGATTATGAGAAA+GGG | - | chr7_3:65608747-65608766 | None:intergenic | 20.0% |
!! | AAAAGATATGATTATGAGAA+AGG | - | chr7_3:65608748-65608767 | None:intergenic | 20.0% |
!!! | TGCTGTAGATATTTTTTTAT+TGG | + | chr7_3:65609122-65609141 | Msa1117300:intron | 20.0% |
!! | TAGAAATACAGTAAAAAATC+CGG | - | chr7_3:65609200-65609219 | None:intergenic | 20.0% |
!! | AGTTTATTAATTGGTGAAAT+AGG | + | chr7_3:65609335-65609354 | Msa1117300:intron | 20.0% |
!! | AATGCTAAGAAACTAAATAT+AGG | + | chr7_3:65609530-65609549 | Msa1117300:intron | 20.0% |
!!! | TATACATGTACATTTTTTCT+AGG | + | chr7_3:65609928-65609947 | Msa1117300:intron | 20.0% |
!! | TAACGATCAAAGTTATTTAA+AGG | - | chr7_3:65610084-65610103 | None:intergenic | 20.0% |
!!! | CTCTAAAATGATAAGATCAA+AGG | - | chr7_3:65606877-65606896 | None:intergenic | 25.0% |
! | TACTTTATGTTTGTGTATAG+AGG | + | chr7_3:65607738-65607757 | Msa1117300:intron | 25.0% |
! | TCTTCTCTAAATTGAGAAAA+AGG | - | chr7_3:65607795-65607814 | None:intergenic | 25.0% |
! | GAAATATCCATCTACATTAT+CGG | + | chr7_3:65608154-65608173 | Msa1117300:intron | 25.0% |
!!! | CATGATGCTCTAAAAAAAAT+TGG | + | chr7_3:65608186-65608205 | Msa1117300:intron | 25.0% |
!!! | TTTTGAAATATGTCAGACTT+AGG | - | chr7_3:65608276-65608295 | None:intergenic | 25.0% |
!!! | ATATACTTTCAAGTTTCATC+AGG | - | chr7_3:65608371-65608390 | None:intergenic | 25.0% |
! | AGTCTATTCAAAATCTAACT+CGG | - | chr7_3:65608684-65608703 | None:intergenic | 25.0% |
! | AAGATATGATTATGAGAAAG+GGG | - | chr7_3:65608746-65608765 | None:intergenic | 25.0% |
! | AAGCTCAAATCAATACTTAA+AGG | + | chr7_3:65608778-65608797 | Msa1117300:intron | 25.0% |
! | AGCTCAAATCAATACTTAAA+GGG | + | chr7_3:65608779-65608798 | Msa1117300:intron | 25.0% |
! | AGAAAACACAAATAAGATGA+TGG | - | chr7_3:65608856-65608875 | None:intergenic | 25.0% |
! | TAATTAACACGTAAGAAAAC+TGG | - | chr7_3:65608882-65608901 | None:intergenic | 25.0% |
! | TATGTTCTTATTATCTTGTC+AGG | + | chr7_3:65609149-65609168 | Msa1117300:intron | 25.0% |
!!! | TTTACTGTATTTCTAGAGAA+AGG | + | chr7_3:65609205-65609224 | Msa1117300:CDS | 25.0% |
!!! | TTACTGTATTTCTAGAGAAA+GGG | + | chr7_3:65609206-65609225 | Msa1117300:CDS | 25.0% |
! | AGAGACAAGTTAATAAGTTT+AGG | - | chr7_3:65609471-65609490 | None:intergenic | 25.0% |
! | CTCTTTATCTTGTGTATTTA+GGG | + | chr7_3:65609587-65609606 | Msa1117300:intron | 25.0% |
! | ATTGCTGAATAAGAAAAATG+TGG | + | chr7_3:65609800-65609819 | Msa1117300:CDS | 25.0% |
AGTGTTTAAAGACCTTAATG+AGG | + | chr7_3:65606530-65606549 | Msa1117300:CDS | 30.0% | |
AGGCACAAACTTTAATATTG+AGG | - | chr7_3:65606632-65606651 | None:intergenic | 30.0% | |
TGTGCCTTAATCTATGATTA+TGG | + | chr7_3:65606645-65606664 | Msa1117300:intron | 30.0% | |
GTAGCCATAATCATAGATTA+AGG | - | chr7_3:65606652-65606671 | None:intergenic | 30.0% | |
! | TTTCATTATTTGAGGCCATT+TGG | + | chr7_3:65606709-65606728 | Msa1117300:intron | 30.0% |
!! | CTTCATAAGTTGTTTTGCAT+AGG | + | chr7_3:65606825-65606844 | Msa1117300:intron | 30.0% |
! | ATTTTCACTTCCTTCTTGAT+AGG | - | chr7_3:65607199-65607218 | None:intergenic | 30.0% |
AGAAGAAGAGAAAATACATC+TGG | - | chr7_3:65607265-65607284 | None:intergenic | 30.0% | |
ACCTTTATGATGCATTGAAA+AGG | + | chr7_3:65607444-65607463 | Msa1117300:intron | 30.0% | |
! | TCCTTTTCAATGCATCATAA+AGG | - | chr7_3:65607448-65607467 | None:intergenic | 30.0% |
TCTCGTCGCTAAAATTTAAA+TGG | + | chr7_3:65607671-65607690 | Msa1117300:intron | 30.0% | |
TGTTCAATATCTTACCTCTT+TGG | + | chr7_3:65607762-65607781 | Msa1117300:intron | 30.0% | |
GTTCAATATCTTACCTCTTT+GGG | + | chr7_3:65607763-65607782 | Msa1117300:intron | 30.0% | |
AAAAAGGATATAACCCAAAG+AGG | - | chr7_3:65607779-65607798 | None:intergenic | 30.0% | |
ATTAGATATGACATTGGAGA+TGG | + | chr7_3:65607916-65607935 | Msa1117300:CDS | 30.0% | |
!! | GTGTTTTAAACCCATTACTT+TGG | + | chr7_3:65608014-65608033 | Msa1117300:CDS | 30.0% |
! | GCTTAACCTAGCATTTTTAA+AGG | + | chr7_3:65608345-65608364 | Msa1117300:intron | 30.0% |
ATTCAAGCCTTCTTATGATT+TGG | - | chr7_3:65608483-65608502 | None:intergenic | 30.0% | |
ACTCGTTCAATAAAAAGACT+GGG | - | chr7_3:65608657-65608676 | None:intergenic | 30.0% | |
AACTCGTTCAATAAAAAGAC+TGG | - | chr7_3:65608658-65608677 | None:intergenic | 30.0% | |
! | AGTCTTTTTATTGAACGAGT+TGG | + | chr7_3:65608657-65608676 | Msa1117300:intron | 30.0% |
! | TTTTGAATAGACTAGACTGT+AGG | + | chr7_3:65608691-65608710 | Msa1117300:intron | 30.0% |
TCTTACGTGTTAATTACTAG+TGG | + | chr7_3:65608886-65608905 | Msa1117300:intron | 30.0% | |
! | TCGAATGTTATTTGCTTAGA+AGG | - | chr7_3:65609067-65609086 | None:intergenic | 30.0% |
!! | TACTGTATTTCTAGAGAAAG+GGG | + | chr7_3:65609207-65609226 | Msa1117300:CDS | 30.0% |
AATTGGTGAAATAGGATTCA+TGG | + | chr7_3:65609343-65609362 | Msa1117300:intron | 30.0% | |
GCTCTTTATCTTGTGTATTT+AGG | + | chr7_3:65609586-65609605 | Msa1117300:intron | 30.0% | |
AAAAATGTGGTGCAATTCTA+TGG | + | chr7_3:65609813-65609832 | Msa1117300:CDS | 30.0% | |
! | TTGAAAGTGAGATTTTGTTC+AGG | - | chr7_3:65609879-65609898 | None:intergenic | 30.0% |
CAAAATCTCACTTTCAATCA+AGG | + | chr7_3:65609882-65609901 | Msa1117300:CDS | 30.0% | |
! | AGGTATGTATACATTTTACG+TGG | + | chr7_3:65609902-65609921 | Msa1117300:intron | 30.0% |
AGGTCTTTAAACACTCTTTG+AGG | - | chr7_3:65606525-65606544 | None:intergenic | 35.0% | |
CAACTTTGATGAAATACTGC+TGG | - | chr7_3:65606609-65606628 | None:intergenic | 35.0% | |
! | TTATTTGAGGCCATTTGGAT+TGG | + | chr7_3:65606714-65606733 | Msa1117300:intron | 35.0% |
!!! | CTTCTTCATTTTTTCCTTGC+AGG | + | chr7_3:65607119-65607138 | Msa1117300:intron | 35.0% |
! | CACTGCTCTTGTAAATTTTG+TGG | + | chr7_3:65607171-65607190 | Msa1117300:CDS | 35.0% |
! | TTTTGTGGATCCTATCAAGA+AGG | + | chr7_3:65607186-65607205 | Msa1117300:CDS | 35.0% |
TTCAATCGTGAAAAGTTCTG+TGG | + | chr7_3:65607568-65607587 | Msa1117300:CDS | 35.0% | |
TTTCAAACCTCTGATGTATC+TGG | - | chr7_3:65607885-65607904 | None:intergenic | 35.0% | |
! | AGAGGTTTGAAATGCTTCTA+CGG | + | chr7_3:65607893-65607912 | Msa1117300:CDS | 35.0% |
!! | CTACGGATTAGATATGACAT+TGG | + | chr7_3:65607910-65607929 | Msa1117300:CDS | 35.0% |
TTTGCGTAGATTACATGAAG+TGG | + | chr7_3:65607954-65607973 | Msa1117300:CDS | 35.0% | |
ACATGAAGTGGAAAACAAGA+AGG | + | chr7_3:65607966-65607985 | Msa1117300:CDS | 35.0% | |
CATGAAGTGGAAAACAAGAA+GGG | + | chr7_3:65607967-65607986 | Msa1117300:CDS | 35.0% | |
AAACCCATTACTTTGGATCT+TGG | + | chr7_3:65608021-65608040 | Msa1117300:CDS | 35.0% | |
AATGGCTACTTAGAATTCTG+GGG | - | chr7_3:65608068-65608087 | None:intergenic | 35.0% | |
CAATGGCTACTTAGAATTCT+GGG | - | chr7_3:65608069-65608088 | None:intergenic | 35.0% | |
ATTCTAAGTAGCCATTGGTA+AGG | + | chr7_3:65608072-65608091 | Msa1117300:intron | 35.0% | |
TGAGTAACCGATAATGTAGA+TGG | - | chr7_3:65608164-65608183 | None:intergenic | 35.0% | |
CAACATCTCATCTCCTAATA+GGG | + | chr7_3:65608214-65608233 | Msa1117300:intron | 35.0% | |
CTCCTAATAGGGATGAAAAT+AGG | + | chr7_3:65608225-65608244 | Msa1117300:intron | 35.0% | |
! | AGCCTATTTTCATCCCTATT+AGG | - | chr7_3:65608230-65608249 | None:intergenic | 35.0% |
! | TTGCCATAGACTCATTTTCA+AGG | + | chr7_3:65608323-65608342 | Msa1117300:intron | 35.0% |
AAGCCTTGAAAATGAGTCTA+TGG | - | chr7_3:65608329-65608348 | None:intergenic | 35.0% | |
! | ATCAGGCCTTTAAAAATGCT+AGG | - | chr7_3:65608354-65608373 | None:intergenic | 35.0% |
TAACATCACAATGATTCGAG+TGG | - | chr7_3:65608818-65608837 | None:intergenic | 35.0% | |
! | ATAACATTCGATGTATCGAC+TGG | + | chr7_3:65609076-65609095 | Msa1117300:intron | 35.0% |
! | ATTGCAGAGATGCCATTTAT+TGG | + | chr7_3:65609373-65609392 | Msa1117300:CDS | 35.0% |
CTAACTCGTGTTCCAATAAA+TGG | - | chr7_3:65609388-65609407 | None:intergenic | 35.0% | |
CATTTATTGGAACACGAGTT+AGG | + | chr7_3:65609386-65609405 | Msa1117300:CDS | 35.0% | |
! | CAATGGCATTGAAAAGTCTA+CGG | - | chr7_3:65609432-65609451 | None:intergenic | 35.0% |
! | ACTTTTCAATGCCATTGAGT+CGG | + | chr7_3:65609435-65609454 | Msa1117300:CDS | 35.0% |
GGCATTAAGCTATATGAATG+TGG | + | chr7_3:65609689-65609708 | Msa1117300:intron | 35.0% | |
AGCTTTCTCAAATCCAAAAG+AGG | - | chr7_3:65609763-65609782 | None:intergenic | 35.0% | |
!!! | ACATTTTTTCTAGGAGCCAA+TGG | + | chr7_3:65609937-65609956 | Msa1117300:intron | 35.0% |
!!! | CATTTTTTCTAGGAGCCAAT+GGG | + | chr7_3:65609938-65609957 | Msa1117300:intron | 35.0% |
! | TGATTTTCATGTTAGCCCAT+TGG | - | chr7_3:65609956-65609975 | None:intergenic | 35.0% |
AGTTCTCCATATGAATTACG+AGG | + | chr7_3:65610259-65610278 | Msa1117300:CDS | 35.0% | |
ACTGAAGACACATCCAATAG+CGG | - | chr7_3:65607223-65607242 | None:intergenic | 40.0% | |
AATGCATCATAAAGGTGACG+AGG | - | chr7_3:65607440-65607459 | None:intergenic | 40.0% | |
! | GTCAATTGTGTTGATGCCAA+CGG | + | chr7_3:65607538-65607557 | Msa1117300:CDS | 40.0% |
CTGTGGAAAAAGATGTCAAC+AGG | + | chr7_3:65607585-65607604 | Msa1117300:CDS | 40.0% | |
TGTGTTTCCAGATACATCAG+AGG | + | chr7_3:65607875-65607894 | Msa1117300:intron | 40.0% | |
CCTCCAAGATCCAAAGTAAT+GGG | - | chr7_3:65608027-65608046 | None:intergenic | 40.0% | |
ACCTCCAAGATCCAAAGTAA+TGG | - | chr7_3:65608028-65608047 | None:intergenic | 40.0% | |
CCAATGGCTACTTAGAATTC+TGG | - | chr7_3:65608070-65608089 | None:intergenic | 40.0% | |
CCAGAATTCTAAGTAGCCAT+TGG | + | chr7_3:65608067-65608086 | Msa1117300:CDS | 40.0% | |
! | AAAAAGAGTGGCCTTACCAA+TGG | - | chr7_3:65608086-65608105 | None:intergenic | 40.0% |
CCTATTAGGAGATGAGATGT+TGG | - | chr7_3:65608216-65608235 | None:intergenic | 40.0% | |
CCAACATCTCATCTCCTAAT+AGG | + | chr7_3:65608213-65608232 | Msa1117300:intron | 40.0% | |
GGATGAAAATAGGCTAAGCT+GGG | + | chr7_3:65608235-65608254 | Msa1117300:intron | 40.0% | |
TTGGAACACGAGTTAGGTTT+AGG | + | chr7_3:65609392-65609411 | Msa1117300:CDS | 40.0% | |
CGAGTTAGGTTTAGGAAACA+AGG | + | chr7_3:65609400-65609419 | Msa1117300:CDS | 40.0% | |
AATGCCTGCAGATATATGCA+TGG | - | chr7_3:65609675-65609694 | None:intergenic | 40.0% | |
CTATATGAATGTGGAGATGC+TGG | + | chr7_3:65609698-65609717 | Msa1117300:CDS | 40.0% | |
CAAGACTCAGAAAGCTATCA+AGG | + | chr7_3:65610174-65610193 | Msa1117300:CDS | 40.0% | |
AGAAAGCTATCAAGGAAGAG+CGG | + | chr7_3:65610182-65610201 | Msa1117300:CDS | 40.0% | |
! | AGAGAGTCTTGTATTGTCAG+TGG | + | chr7_3:65610211-65610230 | Msa1117300:CDS | 40.0% |
ATTGTCAGTGGAAGAACTTC+AGG | + | chr7_3:65610223-65610242 | Msa1117300:CDS | 40.0% | |
GACCTTAATGAGGATGCATG+CGG | + | chr7_3:65606540-65606559 | Msa1117300:CDS | 45.0% | |
GCATGCGGTGTTTGTAAAGA+CGG | + | chr7_3:65606555-65606574 | Msa1117300:CDS | 45.0% | |
! | TGGGTGACATTTTCACGAGA+AGG | + | chr7_3:65607013-65607032 | Msa1117300:intron | 45.0% |
GGAAGTGAAAATCCCGCTAT+TGG | + | chr7_3:65607207-65607226 | Msa1117300:CDS | 45.0% | |
CTGAAGACACATCCAATAGC+GGG | - | chr7_3:65607222-65607241 | None:intergenic | 45.0% | |
ACGATTGAACTCATCACCGT+TGG | - | chr7_3:65607557-65607576 | None:intergenic | 45.0% | |
CCCATTACTTTGGATCTTGG+AGG | + | chr7_3:65608024-65608043 | Msa1117300:CDS | 45.0% | |
GGGATGAAAATAGGCTAAGC+TGG | + | chr7_3:65608234-65608253 | Msa1117300:intron | 45.0% | |
!! | AAGCTGGGTCGAGTTTTGTA+AGG | + | chr7_3:65608250-65608269 | Msa1117300:intron | 45.0% |
GAATAGACTAGACTGTAGGC+CGG | + | chr7_3:65608695-65608714 | Msa1117300:intron | 45.0% | |
!! | ACATTCGATGTATCGACTGG+TGG | + | chr7_3:65609079-65609098 | Msa1117300:intron | 45.0% |
ATCCGGCATAATCAACAGCA+CGG | - | chr7_3:65609183-65609202 | None:intergenic | 45.0% | |
! | CAATCTGTGTTGCTACTCTC+AGG | + | chr7_3:65609236-65609255 | Msa1117300:CDS | 45.0% |
!! | GTTTGTACTCACCGACTCAA+TGG | - | chr7_3:65609449-65609468 | None:intergenic | 45.0% |
GCTACCATGCATATATCTGC+AGG | + | chr7_3:65609668-65609687 | Msa1117300:intron | 45.0% | |
! | TGTAACACTTGTAGCGCTGA+TGG | - | chr7_3:65609729-65609748 | None:intergenic | 45.0% |
CGCTACAAGTGTTACACACT+TGG | + | chr7_3:65609733-65609752 | Msa1117300:CDS | 45.0% | |
! | CACACTTGGACTTCCTCTTT+TGG | + | chr7_3:65609747-65609766 | Msa1117300:CDS | 45.0% |
TGTGGTGCAATTCTATGGAG+TGG | + | chr7_3:65609818-65609837 | Msa1117300:CDS | 45.0% | |
CGAGCTCCTCGTAATTCATA+TGG | - | chr7_3:65610268-65610287 | None:intergenic | 45.0% | |
CACCGCATGCATCCTCATTA+AGG | - | chr7_3:65606545-65606564 | None:intergenic | 50.0% | |
TGCGGTGTTTGTAAAGACGG+AGG | + | chr7_3:65606558-65606577 | Msa1117300:CDS | 50.0% | |
GGATCTTGGAGGTGAGAAGA+TGG | + | chr7_3:65608035-65608054 | Msa1117300:CDS | 50.0% | |
! | TCCCGTGCTGTTGATTATGC+CGG | + | chr7_3:65609178-65609197 | Msa1117300:CDS | 50.0% |
TCCGGCATAATCAACAGCAC+GGG | - | chr7_3:65609182-65609201 | None:intergenic | 50.0% | |
ACTAGACTGTAGGCCGGTGT+CGG | + | chr7_3:65608701-65608720 | Msa1117300:intron | 55.0% | |
CATGTCAGACCATCCGACAC+CGG | - | chr7_3:65608717-65608736 | None:intergenic | 55.0% | |
TTACGAGGAGCTCGTGAGAG+AGG | + | chr7_3:65610274-65610293 | Msa1117300:CDS | 55.0% | |
TACGAGGAGCTCGTGAGAGA+GGG | + | chr7_3:65610275-65610294 | Msa1117300:CDS | 55.0% | |
TCCTTGCAGGAGCTTCCAGC+AGG | + | chr7_3:65607132-65607151 | Msa1117300:intron | 60.0% | |
ACCTGCTGGAAGCTCCTGCA+AGG | - | chr7_3:65607136-65607155 | None:intergenic | 60.0% | |
AGGAGCTTCCAGCAGGTGAC+TGG | + | chr7_3:65607139-65607158 | Msa1117300:intron | 60.0% | |
ATGCAGTGCCAGTCACCTGC+TGG | - | chr7_3:65607150-65607169 | None:intergenic | 60.0% | |
! | GACTGTAGGCCGGTGTCGGA+TGG | + | chr7_3:65608705-65608724 | Msa1117300:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 65606510 | 65610327 | 65606510 | ID=Msa1117300;Name=Msa1117300 |
chr7_3 | mRNA | 65606510 | 65610327 | 65606510 | ID=Msa1117300-mRNA-1;Parent=Msa1117300;Name=Msa1117300-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|0|0|1|1|1|8|0|360 |
chr7_3 | exon | 65606510 | 65606641 | 65606510 | ID=Msa1117300-mRNA-1:exon:15674;Parent=Msa1117300-mRNA-1 |
chr7_3 | exon | 65607141 | 65607246 | 65607141 | ID=Msa1117300-mRNA-1:exon:15675;Parent=Msa1117300-mRNA-1 |
chr7_3 | exon | 65607533 | 65607606 | 65607533 | ID=Msa1117300-mRNA-1:exon:15676;Parent=Msa1117300-mRNA-1 |
chr7_3 | exon | 65607886 | 65608088 | 65607886 | ID=Msa1117300-mRNA-1:exon:15677;Parent=Msa1117300-mRNA-1 |
chr7_3 | exon | 65609171 | 65609257 | 65609171 | ID=Msa1117300-mRNA-1:exon:15678;Parent=Msa1117300-mRNA-1 |
chr7_3 | exon | 65609357 | 65609456 | 65609357 | ID=Msa1117300-mRNA-1:exon:15679;Parent=Msa1117300-mRNA-1 |
chr7_3 | exon | 65609690 | 65609903 | 65609690 | ID=Msa1117300-mRNA-1:exon:15680;Parent=Msa1117300-mRNA-1 |
chr7_3 | exon | 65610161 | 65610327 | 65610161 | ID=Msa1117300-mRNA-1:exon:15681;Parent=Msa1117300-mRNA-1 |
chr7_3 | CDS | 65606510 | 65606641 | 65606510 | ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1 |
chr7_3 | CDS | 65607141 | 65607246 | 65607141 | ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1 |
chr7_3 | CDS | 65607533 | 65607606 | 65607533 | ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1 |
chr7_3 | CDS | 65607886 | 65608088 | 65607886 | ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1 |
chr7_3 | CDS | 65609171 | 65609257 | 65609171 | ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1 |
chr7_3 | CDS | 65609357 | 65609456 | 65609357 | ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1 |
chr7_3 | CDS | 65609690 | 65609903 | 65609690 | ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1 |
chr7_3 | CDS | 65610161 | 65610327 | 65610161 | ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1 |
Gene Sequence |
Protein sequence |