AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1117300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1117300 MtrunA17_Chr7g0259981 81.169 308 53 2 1 305 1 306 0.0 531
Msa1117300 MtrunA17_Chr1g0185491 47.024 336 148 7 10 317 913 1246 3.77e-97 315
Msa1117300 MtrunA17_Chr1g0205451 38.762 307 158 4 11 289 706 1010 1.70e-69 236
Msa1117300 MtrunA17_Chr2g0316251 35.714 308 172 5 8 291 861 1166 5.79e-60 209
Msa1117300 MtrunA17_Chr5g0430361 34.375 320 182 8 8 302 752 1068 6.56e-56 197
Msa1117300 MtrunA17_Chr3g0105291 31.915 329 193 9 13 316 707 1029 1.42e-52 187
Msa1117300 MtrunA17_Chr5g0407211 33.935 277 161 6 13 271 125 397 4.10e-47 165
Msa1117300 MtrunA17_Chr5g0407251 33.213 277 163 6 13 271 125 397 8.02e-46 162
Msa1117300 MtrunA17_Chr3g0134811 30.619 307 189 6 13 297 493 797 1.96e-41 154
Msa1117300 MtrunA17_Chr7g0270101 32.526 289 161 7 13 271 481 765 5.08e-41 153
Msa1117300 MtrunA17_Chr3g0134821 30.844 308 169 7 13 288 526 821 4.97e-39 147
Msa1117300 MtrunA17_Chr1g0182481 25.706 354 177 12 13 292 553 894 3.25e-25 107
Msa1117300 MtrunA17_Chr3g0134851 28.520 277 141 8 13 271 205 442 1.14e-23 101
Msa1117300 MtrunA17_Chr1g0179841 27.687 307 177 12 7 293 523 804 1.23e-21 96.7
Msa1117300 MtrunA17_Chr7g0265211 25.566 309 177 12 7 291 668 947 7.03e-21 94.4
Msa1117300 MtrunA17_Chr4g0028111 21.471 340 177 11 13 266 227 562 1.42e-16 81.3
Msa1117300 MtrunA17_Chr4g0027811 22.414 348 173 10 6 291 266 578 3.57e-16 79.7
Msa1117300 MtrunA17_Chr2g0320451 29.221 154 100 4 141 291 876 1023 2.16e-14 74.7
Msa1117300 MtrunA17_Chr2g0320451 47.917 48 25 0 13 60 557 604 1.33e-11 66.2
Msa1117300 MtrunA17_Chr4g0025251 23.715 253 144 9 79 291 458 701 3.54e-13 70.9
Msa1117300 MtrunA17_Chr4g0038871 55.102 49 20 1 11 57 696 744 6.21e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1117300 AT5G36740.5 41.613 310 155 7 11 296 647 954 5.65e-78 260
Msa1117300 AT5G36740.1 41.613 310 155 7 11 296 647 954 5.65e-78 260
Msa1117300 AT5G36740.4 40.000 320 156 6 11 296 494 811 6.22e-76 253
Msa1117300 AT1G05380.3 38.907 311 159 7 16 301 627 931 1.26e-70 239
Msa1117300 AT1G05380.1 38.907 311 159 7 16 301 627 931 1.26e-70 239
Msa1117300 AT1G05380.2 38.907 311 159 7 16 301 627 931 1.26e-70 239
Msa1117300 AT4G14920.2 38.436 307 164 7 8 291 679 983 3.67e-69 235
Msa1117300 AT4G14920.1 38.436 307 164 7 8 291 679 983 3.67e-69 235
Msa1117300 AT4G14920.3 38.436 307 164 7 8 291 679 983 3.76e-69 235
Msa1117300 AT5G36670.4 38.344 326 157 9 11 296 647 968 6.49e-68 231
Msa1117300 AT5G36670.5 38.344 326 157 9 11 296 647 968 6.49e-68 231
Msa1117300 AT5G36670.3 36.905 336 158 8 11 296 494 825 8.38e-66 225
Msa1117300 AT5G36670.1 36.905 336 158 8 11 296 647 978 1.30e-65 225
Msa1117300 AT5G36670.2 42.972 249 116 7 11 235 647 893 3.19e-62 214
Msa1117300 AT5G36740.2 42.972 249 116 7 11 235 647 893 3.19e-62 214
Msa1117300 AT5G36740.3 42.972 249 116 7 11 235 647 893 3.19e-62 214
Msa1117300 AT3G14980.5 36.893 309 171 5 11 297 678 984 5.13e-59 206
Msa1117300 AT3G14980.6 36.893 309 171 5 11 297 723 1029 5.67e-59 206
Msa1117300 AT3G14980.1 36.893 309 171 5 11 297 723 1029 5.67e-59 206
Msa1117300 AT3G14980.2 36.893 309 171 5 11 297 723 1029 5.67e-59 206
Msa1117300 AT3G14980.3 36.893 309 171 5 11 297 723 1029 6.06e-59 206
Msa1117300 AT5G58610.4 35.556 315 166 10 2 286 460 767 4.29e-51 182
Msa1117300 AT5G58610.3 35.556 315 166 10 2 286 691 998 1.19e-50 182
Msa1117300 AT5G58610.8 35.556 315 166 10 2 286 691 998 1.44e-50 181
Msa1117300 AT5G58610.2 35.556 315 166 10 2 286 691 998 1.44e-50 181
Msa1117300 AT5G58610.5 35.556 315 166 10 2 286 682 989 1.53e-50 182
Msa1117300 AT5G58610.6 37.458 299 156 9 2 286 682 963 1.57e-50 181
Msa1117300 AT5G58610.1 37.458 299 156 9 2 286 682 963 1.75e-50 181
Msa1117300 AT5G58610.7 35.556 315 166 10 2 286 682 989 1.81e-50 181
Msa1117300 AT5G58610.10 33.582 268 146 8 2 239 691 956 1.60e-39 149
Msa1117300 AT5G58610.9 33.582 268 146 8 2 239 682 947 1.87e-39 149
Msa1117300 AT5G63900.1 31.613 310 188 11 11 302 253 556 4.12e-36 138
Msa1117300 AT2G36720.1 25.668 374 189 10 13 301 614 983 9.49e-34 132
Msa1117300 AT2G36720.2 25.668 374 189 10 13 301 614 983 9.49e-34 132
Msa1117300 AT3G14980.4 35.981 214 113 5 11 202 723 934 6.49e-33 130
Msa1117300 AT2G37520.1 27.528 356 178 11 13 293 467 817 9.66e-33 129
Msa1117300 AT3G53680.1 26.257 358 182 12 13 295 485 835 5.89e-28 115
Msa1117300 AT3G53680.2 26.257 358 182 12 13 295 487 837 6.24e-28 115
Msa1117300 AT5G58610.11 30.435 230 128 8 2 201 682 909 1.05e-24 106
Msa1117300 AT2G27980.1 26.950 282 161 9 26 291 805 1057 7.68e-22 97.8

Find 66 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCAGAGATGCCATTTAT+TGG 0.215394 7_3:+65609373 Msa1117300:CDS
CACACTTGGACTTCCTCTTT+TGG 0.216281 7_3:+65609747 Msa1117300:CDS
CCAATGGCTACTTAGAATTC+TGG 0.217920 7_3:-65608067 None:intergenic
CTAACTCGTGTTCCAATAAA+TGG 0.259990 7_3:-65609385 None:intergenic
TTGGAACACGAGTTAGGTTT+AGG 0.320138 7_3:+65609392 Msa1117300:CDS
AAACCCATTACTTTGGATCT+TGG 0.343252 7_3:+65608021 Msa1117300:CDS
AATTGGTGAAATAGGATTCA+TGG 0.360966 7_3:+65609343 Msa1117300:intron
CACCGCATGCATCCTCATTA+AGG 0.362137 7_3:-65606542 None:intergenic
TTTACTGTATTTCTAGAGAA+AGG 0.371214 7_3:+65609205 Msa1117300:CDS
GGAAGTGAAAATCCCGCTAT+TGG 0.378386 7_3:+65607207 Msa1117300:CDS
CATTTATTGGAACACGAGTT+AGG 0.385764 7_3:+65609386 Msa1117300:CDS
ATTGTCAGTGGAAGAACTTC+AGG 0.387079 7_3:+65610223 Msa1117300:CDS
CAATGGCTACTTAGAATTCT+GGG 0.405998 7_3:-65608066 None:intergenic
CGCTACAAGTGTTACACACT+TGG 0.417196 7_3:+65609733 Msa1117300:CDS
CGAGCTCCTCGTAATTCATA+TGG 0.419830 7_3:-65610265 None:intergenic
TTACTGTATTTCTAGAGAAA+GGG 0.425474 7_3:+65609206 Msa1117300:CDS
CCTCCAAGATCCAAAGTAAT+GGG 0.432064 7_3:-65608024 None:intergenic
AGAGAAAGTTTATCAACAAT+CGG 0.432642 7_3:-65610317 None:intergenic
CCCATTACTTTGGATCTTGG+AGG 0.440114 7_3:+65608024 Msa1117300:CDS
AGGCACAAACTTTAATATTG+AGG 0.444068 7_3:-65606629 None:intergenic
AGGAGCTTCCAGCAGGTGAC+TGG 0.452037 7_3:+65607139 Msa1117300:intron
CAATCTGTGTTGCTACTCTC+AGG 0.469065 7_3:+65609236 Msa1117300:CDS
GGATCTTGGAGGTGAGAAGA+TGG 0.471084 7_3:+65608035 Msa1117300:CDS
CAAGACTCAGAAAGCTATCA+AGG 0.471221 7_3:+65610174 Msa1117300:CDS
TCCTTGCAGGAGCTTCCAGC+AGG 0.473548 7_3:+65607132 Msa1117300:intron
CAAAATCTCACTTTCAATCA+AGG 0.485189 7_3:+65609882 Msa1117300:CDS
GTTTGTACTCACCGACTCAA+TGG 0.485586 7_3:-65609446 None:intergenic
TCCCGTGCTGTTGATTATGC+CGG 0.486765 7_3:+65609178 Msa1117300:CDS
ATTAGATATGACATTGGAGA+TGG 0.495343 7_3:+65607916 Msa1117300:CDS
ATGCAGTGCCAGTCACCTGC+TGG 0.507073 7_3:-65607147 None:intergenic
TTTGCGTAGATTACATGAAG+TGG 0.508611 7_3:+65607954 Msa1117300:CDS
AGAGGTTTGAAATGCTTCTA+CGG 0.513143 7_3:+65607893 Msa1117300:CDS
CAACTTTGATGAAATACTGC+TGG 0.514841 7_3:-65606606 None:intergenic
ACCTCCAAGATCCAAAGTAA+TGG 0.516234 7_3:-65608025 None:intergenic
CGAGTTAGGTTTAGGAAACA+AGG 0.521835 7_3:+65609400 Msa1117300:CDS
AGGTCTTTAAACACTCTTTG+AGG 0.524105 7_3:-65606522 None:intergenic
ACATGAAGTGGAAAACAAGA+AGG 0.524527 7_3:+65607966 Msa1117300:CDS
CCAGAATTCTAAGTAGCCAT+TGG 0.533832 7_3:+65608067 Msa1117300:CDS
GAGAAAGTTTATCAACAATC+GGG 0.534292 7_3:-65610316 None:intergenic
AGCTTTCTCAAATCCAAAAG+AGG 0.538189 7_3:-65609760 None:intergenic
CTATATGAATGTGGAGATGC+TGG 0.542228 7_3:+65609698 Msa1117300:CDS
TACTGTATTTCTAGAGAAAG+GGG 0.544754 7_3:+65609207 Msa1117300:CDS
ACGATTGAACTCATCACCGT+TGG 0.545711 7_3:-65607554 None:intergenic
TTACGAGGAGCTCGTGAGAG+AGG 0.547515 7_3:+65610274 Msa1117300:CDS
TACGAGGAGCTCGTGAGAGA+GGG 0.549642 7_3:+65610275 Msa1117300:CDS
AGTGTTTAAAGACCTTAATG+AGG 0.560861 7_3:+65606530 Msa1117300:CDS
GCATGCGGTGTTTGTAAAGA+CGG 0.564702 7_3:+65606555 Msa1117300:CDS
TGTAACACTTGTAGCGCTGA+TGG 0.581027 7_3:-65609726 None:intergenic
CTGAAGACACATCCAATAGC+GGG 0.584552 7_3:-65607219 None:intergenic
CAATGGCATTGAAAAGTCTA+CGG 0.587830 7_3:-65609429 None:intergenic
CTACGGATTAGATATGACAT+TGG 0.591647 7_3:+65607910 Msa1117300:CDS
TCCGGCATAATCAACAGCAC+GGG 0.592499 7_3:-65609179 None:intergenic
ATCCGGCATAATCAACAGCA+CGG 0.595394 7_3:-65609180 None:intergenic
TTCAATCGTGAAAAGTTCTG+TGG 0.597157 7_3:+65607568 Msa1117300:CDS
GGCATTAAGCTATATGAATG+TGG 0.599720 7_3:+65609689 Msa1117300:intron
AGAGAGTCTTGTATTGTCAG+TGG 0.611720 7_3:+65610211 Msa1117300:CDS
CATGAAGTGGAAAACAAGAA+GGG 0.614500 7_3:+65607967 Msa1117300:CDS
AATGGCTACTTAGAATTCTG+GGG 0.631109 7_3:-65608065 None:intergenic
TGTGGTGCAATTCTATGGAG+TGG 0.632201 7_3:+65609818 Msa1117300:CDS
TGTGTTTCCAGATACATCAG+AGG 0.640085 7_3:+65607875 Msa1117300:intron
TGCGGTGTTTGTAAAGACGG+AGG 0.684277 7_3:+65606558 Msa1117300:CDS
GTCAATTGTGTTGATGCCAA+CGG 0.685380 7_3:+65607538 Msa1117300:CDS
ACTGAAGACACATCCAATAG+CGG 0.687331 7_3:-65607220 None:intergenic
GACCTTAATGAGGATGCATG+CGG 0.693617 7_3:+65606540 Msa1117300:CDS
AGAAAGCTATCAAGGAAGAG+CGG 0.699589 7_3:+65610182 Msa1117300:CDS
AGTTCTCCATATGAATTACG+AGG 0.736915 7_3:+65610259 Msa1117300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTTTATTTAATTT+AGG + chr7_3:65609505-65609524 Msa1117300:intron 0.0%
!!! TTTTATTTTTATTTAATTTA+GGG + chr7_3:65609506-65609525 Msa1117300:intron 0.0%
!! TTAAGTATTAATTTATCATT+AGG - chr7_3:65606954-65606973 None:intergenic 10.0%
!!! ATACTAATTTAACTTAATTT+TGG + chr7_3:65606993-65607012 Msa1117300:intron 10.0%
!!! TACTAATTTAACTTAATTTT+GGG + chr7_3:65606994-65607013 Msa1117300:intron 10.0%
!! TAAAGTCTATTTAATTAAAT+AGG - chr7_3:65608621-65608640 None:intergenic 10.0%
!! TTATCTAATAAAATAGTTAT+CGG - chr7_3:65608918-65608937 None:intergenic 10.0%
!!! AAGTTTATTTTCATTATTTG+AGG + chr7_3:65606701-65606720 Msa1117300:intron 15.0%
!! AAAAATAAATCAATACAAAC+AGG + chr7_3:65606851-65606870 Msa1117300:intron 15.0%
!! AGTTAAATTATTTCAATATG+TGG - chr7_3:65607068-65607087 None:intergenic 15.0%
!!! AAGTTTTGTTTATTTTTGAT+GGG - chr7_3:65607360-65607379 None:intergenic 15.0%
!!! AAAGTTTTGTTTATTTTTGA+TGG - chr7_3:65607361-65607380 None:intergenic 15.0%
!! ATATTCAACAATATCAATAA+TGG + chr7_3:65608515-65608534 Msa1117300:intron 15.0%
!!! AGATATTTTGAATAAGTTTA+TGG + chr7_3:65608939-65608958 Msa1117300:intron 15.0%
!! TATATTTAGAAACTTCTTAA+TGG - chr7_3:65608965-65608984 None:intergenic 15.0%
!! TGCTGTAAAAAAAATTTAAA+TGG - chr7_3:65608991-65609010 None:intergenic 15.0%
!! GTCGAAAAATATATTAATTA+TGG + chr7_3:65609312-65609331 Msa1117300:intron 15.0%
!! TAATTATGGAGTTTATTAAT+TGG + chr7_3:65609326-65609345 Msa1117300:intron 15.0%
!!! TTTTTTTAAGTAGAGTAAAA+AGG - chr7_3:65609627-65609646 None:intergenic 15.0%
!!! TATACTTTTCTATTTTCTTT+TGG - chr7_3:65609851-65609870 None:intergenic 15.0%
!! AAAAAATAAACCAATCCAAA+TGG - chr7_3:65606727-65606746 None:intergenic 20.0%
!! TCATTATATGTTAATGACAT+TGG + chr7_3:65606925-65606944 Msa1117300:intron 20.0%
!! TATTCAGTTAATTAATGAAG+AGG - chr7_3:65607309-65607328 None:intergenic 20.0%
!!! AGTTTTGTTTATTTTTGATG+GGG - chr7_3:65607359-65607378 None:intergenic 20.0%
!! ACTATAGTTATAAAAAAGAG+TGG - chr7_3:65608098-65608117 None:intergenic 20.0%
!! AAAAATTATATGTTTGAGTC+TGG + chr7_3:65608292-65608311 Msa1117300:intron 20.0%
!!! TCATAAGATTTTTAATAGCA+GGG - chr7_3:65608424-65608443 None:intergenic 20.0%
!!! TTCATAAGATTTTTAATAGC+AGG - chr7_3:65608425-65608444 None:intergenic 20.0%
!! TTATTTAGTAGCTGATATAT+TGG - chr7_3:65608460-65608479 None:intergenic 20.0%
!! TAAATAACCAAATCATAAGA+AGG + chr7_3:65608473-65608492 Msa1117300:intron 20.0%
!! AAAGATATGATTATGAGAAA+GGG - chr7_3:65608747-65608766 None:intergenic 20.0%
!! AAAAGATATGATTATGAGAA+AGG - chr7_3:65608748-65608767 None:intergenic 20.0%
!!! TGCTGTAGATATTTTTTTAT+TGG + chr7_3:65609122-65609141 Msa1117300:intron 20.0%
!! TAGAAATACAGTAAAAAATC+CGG - chr7_3:65609200-65609219 None:intergenic 20.0%
!! AGTTTATTAATTGGTGAAAT+AGG + chr7_3:65609335-65609354 Msa1117300:intron 20.0%
!! AATGCTAAGAAACTAAATAT+AGG + chr7_3:65609530-65609549 Msa1117300:intron 20.0%
!!! TATACATGTACATTTTTTCT+AGG + chr7_3:65609928-65609947 Msa1117300:intron 20.0%
!! TAACGATCAAAGTTATTTAA+AGG - chr7_3:65610084-65610103 None:intergenic 20.0%
!!! CTCTAAAATGATAAGATCAA+AGG - chr7_3:65606877-65606896 None:intergenic 25.0%
! TACTTTATGTTTGTGTATAG+AGG + chr7_3:65607738-65607757 Msa1117300:intron 25.0%
! TCTTCTCTAAATTGAGAAAA+AGG - chr7_3:65607795-65607814 None:intergenic 25.0%
! GAAATATCCATCTACATTAT+CGG + chr7_3:65608154-65608173 Msa1117300:intron 25.0%
!!! CATGATGCTCTAAAAAAAAT+TGG + chr7_3:65608186-65608205 Msa1117300:intron 25.0%
!!! TTTTGAAATATGTCAGACTT+AGG - chr7_3:65608276-65608295 None:intergenic 25.0%
!!! ATATACTTTCAAGTTTCATC+AGG - chr7_3:65608371-65608390 None:intergenic 25.0%
! AGTCTATTCAAAATCTAACT+CGG - chr7_3:65608684-65608703 None:intergenic 25.0%
! AAGATATGATTATGAGAAAG+GGG - chr7_3:65608746-65608765 None:intergenic 25.0%
! AAGCTCAAATCAATACTTAA+AGG + chr7_3:65608778-65608797 Msa1117300:intron 25.0%
! AGCTCAAATCAATACTTAAA+GGG + chr7_3:65608779-65608798 Msa1117300:intron 25.0%
! AGAAAACACAAATAAGATGA+TGG - chr7_3:65608856-65608875 None:intergenic 25.0%
! TAATTAACACGTAAGAAAAC+TGG - chr7_3:65608882-65608901 None:intergenic 25.0%
! TATGTTCTTATTATCTTGTC+AGG + chr7_3:65609149-65609168 Msa1117300:intron 25.0%
!!! TTTACTGTATTTCTAGAGAA+AGG + chr7_3:65609205-65609224 Msa1117300:CDS 25.0%
!!! TTACTGTATTTCTAGAGAAA+GGG + chr7_3:65609206-65609225 Msa1117300:CDS 25.0%
! AGAGACAAGTTAATAAGTTT+AGG - chr7_3:65609471-65609490 None:intergenic 25.0%
! CTCTTTATCTTGTGTATTTA+GGG + chr7_3:65609587-65609606 Msa1117300:intron 25.0%
! ATTGCTGAATAAGAAAAATG+TGG + chr7_3:65609800-65609819 Msa1117300:CDS 25.0%
AGTGTTTAAAGACCTTAATG+AGG + chr7_3:65606530-65606549 Msa1117300:CDS 30.0%
AGGCACAAACTTTAATATTG+AGG - chr7_3:65606632-65606651 None:intergenic 30.0%
TGTGCCTTAATCTATGATTA+TGG + chr7_3:65606645-65606664 Msa1117300:intron 30.0%
GTAGCCATAATCATAGATTA+AGG - chr7_3:65606652-65606671 None:intergenic 30.0%
! TTTCATTATTTGAGGCCATT+TGG + chr7_3:65606709-65606728 Msa1117300:intron 30.0%
!! CTTCATAAGTTGTTTTGCAT+AGG + chr7_3:65606825-65606844 Msa1117300:intron 30.0%
! ATTTTCACTTCCTTCTTGAT+AGG - chr7_3:65607199-65607218 None:intergenic 30.0%
AGAAGAAGAGAAAATACATC+TGG - chr7_3:65607265-65607284 None:intergenic 30.0%
ACCTTTATGATGCATTGAAA+AGG + chr7_3:65607444-65607463 Msa1117300:intron 30.0%
! TCCTTTTCAATGCATCATAA+AGG - chr7_3:65607448-65607467 None:intergenic 30.0%
TCTCGTCGCTAAAATTTAAA+TGG + chr7_3:65607671-65607690 Msa1117300:intron 30.0%
TGTTCAATATCTTACCTCTT+TGG + chr7_3:65607762-65607781 Msa1117300:intron 30.0%
GTTCAATATCTTACCTCTTT+GGG + chr7_3:65607763-65607782 Msa1117300:intron 30.0%
AAAAAGGATATAACCCAAAG+AGG - chr7_3:65607779-65607798 None:intergenic 30.0%
ATTAGATATGACATTGGAGA+TGG + chr7_3:65607916-65607935 Msa1117300:CDS 30.0%
!! GTGTTTTAAACCCATTACTT+TGG + chr7_3:65608014-65608033 Msa1117300:CDS 30.0%
! GCTTAACCTAGCATTTTTAA+AGG + chr7_3:65608345-65608364 Msa1117300:intron 30.0%
ATTCAAGCCTTCTTATGATT+TGG - chr7_3:65608483-65608502 None:intergenic 30.0%
ACTCGTTCAATAAAAAGACT+GGG - chr7_3:65608657-65608676 None:intergenic 30.0%
AACTCGTTCAATAAAAAGAC+TGG - chr7_3:65608658-65608677 None:intergenic 30.0%
! AGTCTTTTTATTGAACGAGT+TGG + chr7_3:65608657-65608676 Msa1117300:intron 30.0%
! TTTTGAATAGACTAGACTGT+AGG + chr7_3:65608691-65608710 Msa1117300:intron 30.0%
TCTTACGTGTTAATTACTAG+TGG + chr7_3:65608886-65608905 Msa1117300:intron 30.0%
! TCGAATGTTATTTGCTTAGA+AGG - chr7_3:65609067-65609086 None:intergenic 30.0%
!! TACTGTATTTCTAGAGAAAG+GGG + chr7_3:65609207-65609226 Msa1117300:CDS 30.0%
AATTGGTGAAATAGGATTCA+TGG + chr7_3:65609343-65609362 Msa1117300:intron 30.0%
GCTCTTTATCTTGTGTATTT+AGG + chr7_3:65609586-65609605 Msa1117300:intron 30.0%
AAAAATGTGGTGCAATTCTA+TGG + chr7_3:65609813-65609832 Msa1117300:CDS 30.0%
! TTGAAAGTGAGATTTTGTTC+AGG - chr7_3:65609879-65609898 None:intergenic 30.0%
CAAAATCTCACTTTCAATCA+AGG + chr7_3:65609882-65609901 Msa1117300:CDS 30.0%
! AGGTATGTATACATTTTACG+TGG + chr7_3:65609902-65609921 Msa1117300:intron 30.0%
AGGTCTTTAAACACTCTTTG+AGG - chr7_3:65606525-65606544 None:intergenic 35.0%
CAACTTTGATGAAATACTGC+TGG - chr7_3:65606609-65606628 None:intergenic 35.0%
! TTATTTGAGGCCATTTGGAT+TGG + chr7_3:65606714-65606733 Msa1117300:intron 35.0%
!!! CTTCTTCATTTTTTCCTTGC+AGG + chr7_3:65607119-65607138 Msa1117300:intron 35.0%
! CACTGCTCTTGTAAATTTTG+TGG + chr7_3:65607171-65607190 Msa1117300:CDS 35.0%
! TTTTGTGGATCCTATCAAGA+AGG + chr7_3:65607186-65607205 Msa1117300:CDS 35.0%
TTCAATCGTGAAAAGTTCTG+TGG + chr7_3:65607568-65607587 Msa1117300:CDS 35.0%
TTTCAAACCTCTGATGTATC+TGG - chr7_3:65607885-65607904 None:intergenic 35.0%
! AGAGGTTTGAAATGCTTCTA+CGG + chr7_3:65607893-65607912 Msa1117300:CDS 35.0%
!! CTACGGATTAGATATGACAT+TGG + chr7_3:65607910-65607929 Msa1117300:CDS 35.0%
TTTGCGTAGATTACATGAAG+TGG + chr7_3:65607954-65607973 Msa1117300:CDS 35.0%
ACATGAAGTGGAAAACAAGA+AGG + chr7_3:65607966-65607985 Msa1117300:CDS 35.0%
CATGAAGTGGAAAACAAGAA+GGG + chr7_3:65607967-65607986 Msa1117300:CDS 35.0%
AAACCCATTACTTTGGATCT+TGG + chr7_3:65608021-65608040 Msa1117300:CDS 35.0%
AATGGCTACTTAGAATTCTG+GGG - chr7_3:65608068-65608087 None:intergenic 35.0%
CAATGGCTACTTAGAATTCT+GGG - chr7_3:65608069-65608088 None:intergenic 35.0%
ATTCTAAGTAGCCATTGGTA+AGG + chr7_3:65608072-65608091 Msa1117300:intron 35.0%
TGAGTAACCGATAATGTAGA+TGG - chr7_3:65608164-65608183 None:intergenic 35.0%
CAACATCTCATCTCCTAATA+GGG + chr7_3:65608214-65608233 Msa1117300:intron 35.0%
CTCCTAATAGGGATGAAAAT+AGG + chr7_3:65608225-65608244 Msa1117300:intron 35.0%
! AGCCTATTTTCATCCCTATT+AGG - chr7_3:65608230-65608249 None:intergenic 35.0%
! TTGCCATAGACTCATTTTCA+AGG + chr7_3:65608323-65608342 Msa1117300:intron 35.0%
AAGCCTTGAAAATGAGTCTA+TGG - chr7_3:65608329-65608348 None:intergenic 35.0%
! ATCAGGCCTTTAAAAATGCT+AGG - chr7_3:65608354-65608373 None:intergenic 35.0%
TAACATCACAATGATTCGAG+TGG - chr7_3:65608818-65608837 None:intergenic 35.0%
! ATAACATTCGATGTATCGAC+TGG + chr7_3:65609076-65609095 Msa1117300:intron 35.0%
! ATTGCAGAGATGCCATTTAT+TGG + chr7_3:65609373-65609392 Msa1117300:CDS 35.0%
CTAACTCGTGTTCCAATAAA+TGG - chr7_3:65609388-65609407 None:intergenic 35.0%
CATTTATTGGAACACGAGTT+AGG + chr7_3:65609386-65609405 Msa1117300:CDS 35.0%
! CAATGGCATTGAAAAGTCTA+CGG - chr7_3:65609432-65609451 None:intergenic 35.0%
! ACTTTTCAATGCCATTGAGT+CGG + chr7_3:65609435-65609454 Msa1117300:CDS 35.0%
GGCATTAAGCTATATGAATG+TGG + chr7_3:65609689-65609708 Msa1117300:intron 35.0%
AGCTTTCTCAAATCCAAAAG+AGG - chr7_3:65609763-65609782 None:intergenic 35.0%
!!! ACATTTTTTCTAGGAGCCAA+TGG + chr7_3:65609937-65609956 Msa1117300:intron 35.0%
!!! CATTTTTTCTAGGAGCCAAT+GGG + chr7_3:65609938-65609957 Msa1117300:intron 35.0%
! TGATTTTCATGTTAGCCCAT+TGG - chr7_3:65609956-65609975 None:intergenic 35.0%
AGTTCTCCATATGAATTACG+AGG + chr7_3:65610259-65610278 Msa1117300:CDS 35.0%
ACTGAAGACACATCCAATAG+CGG - chr7_3:65607223-65607242 None:intergenic 40.0%
AATGCATCATAAAGGTGACG+AGG - chr7_3:65607440-65607459 None:intergenic 40.0%
! GTCAATTGTGTTGATGCCAA+CGG + chr7_3:65607538-65607557 Msa1117300:CDS 40.0%
CTGTGGAAAAAGATGTCAAC+AGG + chr7_3:65607585-65607604 Msa1117300:CDS 40.0%
TGTGTTTCCAGATACATCAG+AGG + chr7_3:65607875-65607894 Msa1117300:intron 40.0%
CCTCCAAGATCCAAAGTAAT+GGG - chr7_3:65608027-65608046 None:intergenic 40.0%
ACCTCCAAGATCCAAAGTAA+TGG - chr7_3:65608028-65608047 None:intergenic 40.0%
CCAATGGCTACTTAGAATTC+TGG - chr7_3:65608070-65608089 None:intergenic 40.0%
CCAGAATTCTAAGTAGCCAT+TGG + chr7_3:65608067-65608086 Msa1117300:CDS 40.0%
! AAAAAGAGTGGCCTTACCAA+TGG - chr7_3:65608086-65608105 None:intergenic 40.0%
CCTATTAGGAGATGAGATGT+TGG - chr7_3:65608216-65608235 None:intergenic 40.0%
CCAACATCTCATCTCCTAAT+AGG + chr7_3:65608213-65608232 Msa1117300:intron 40.0%
GGATGAAAATAGGCTAAGCT+GGG + chr7_3:65608235-65608254 Msa1117300:intron 40.0%
TTGGAACACGAGTTAGGTTT+AGG + chr7_3:65609392-65609411 Msa1117300:CDS 40.0%
CGAGTTAGGTTTAGGAAACA+AGG + chr7_3:65609400-65609419 Msa1117300:CDS 40.0%
AATGCCTGCAGATATATGCA+TGG - chr7_3:65609675-65609694 None:intergenic 40.0%
CTATATGAATGTGGAGATGC+TGG + chr7_3:65609698-65609717 Msa1117300:CDS 40.0%
CAAGACTCAGAAAGCTATCA+AGG + chr7_3:65610174-65610193 Msa1117300:CDS 40.0%
AGAAAGCTATCAAGGAAGAG+CGG + chr7_3:65610182-65610201 Msa1117300:CDS 40.0%
! AGAGAGTCTTGTATTGTCAG+TGG + chr7_3:65610211-65610230 Msa1117300:CDS 40.0%
ATTGTCAGTGGAAGAACTTC+AGG + chr7_3:65610223-65610242 Msa1117300:CDS 40.0%
GACCTTAATGAGGATGCATG+CGG + chr7_3:65606540-65606559 Msa1117300:CDS 45.0%
GCATGCGGTGTTTGTAAAGA+CGG + chr7_3:65606555-65606574 Msa1117300:CDS 45.0%
! TGGGTGACATTTTCACGAGA+AGG + chr7_3:65607013-65607032 Msa1117300:intron 45.0%
GGAAGTGAAAATCCCGCTAT+TGG + chr7_3:65607207-65607226 Msa1117300:CDS 45.0%
CTGAAGACACATCCAATAGC+GGG - chr7_3:65607222-65607241 None:intergenic 45.0%
ACGATTGAACTCATCACCGT+TGG - chr7_3:65607557-65607576 None:intergenic 45.0%
CCCATTACTTTGGATCTTGG+AGG + chr7_3:65608024-65608043 Msa1117300:CDS 45.0%
GGGATGAAAATAGGCTAAGC+TGG + chr7_3:65608234-65608253 Msa1117300:intron 45.0%
!! AAGCTGGGTCGAGTTTTGTA+AGG + chr7_3:65608250-65608269 Msa1117300:intron 45.0%
GAATAGACTAGACTGTAGGC+CGG + chr7_3:65608695-65608714 Msa1117300:intron 45.0%
!! ACATTCGATGTATCGACTGG+TGG + chr7_3:65609079-65609098 Msa1117300:intron 45.0%
ATCCGGCATAATCAACAGCA+CGG - chr7_3:65609183-65609202 None:intergenic 45.0%
! CAATCTGTGTTGCTACTCTC+AGG + chr7_3:65609236-65609255 Msa1117300:CDS 45.0%
!! GTTTGTACTCACCGACTCAA+TGG - chr7_3:65609449-65609468 None:intergenic 45.0%
GCTACCATGCATATATCTGC+AGG + chr7_3:65609668-65609687 Msa1117300:intron 45.0%
! TGTAACACTTGTAGCGCTGA+TGG - chr7_3:65609729-65609748 None:intergenic 45.0%
CGCTACAAGTGTTACACACT+TGG + chr7_3:65609733-65609752 Msa1117300:CDS 45.0%
! CACACTTGGACTTCCTCTTT+TGG + chr7_3:65609747-65609766 Msa1117300:CDS 45.0%
TGTGGTGCAATTCTATGGAG+TGG + chr7_3:65609818-65609837 Msa1117300:CDS 45.0%
CGAGCTCCTCGTAATTCATA+TGG - chr7_3:65610268-65610287 None:intergenic 45.0%
CACCGCATGCATCCTCATTA+AGG - chr7_3:65606545-65606564 None:intergenic 50.0%
TGCGGTGTTTGTAAAGACGG+AGG + chr7_3:65606558-65606577 Msa1117300:CDS 50.0%
GGATCTTGGAGGTGAGAAGA+TGG + chr7_3:65608035-65608054 Msa1117300:CDS 50.0%
! TCCCGTGCTGTTGATTATGC+CGG + chr7_3:65609178-65609197 Msa1117300:CDS 50.0%
TCCGGCATAATCAACAGCAC+GGG - chr7_3:65609182-65609201 None:intergenic 50.0%
ACTAGACTGTAGGCCGGTGT+CGG + chr7_3:65608701-65608720 Msa1117300:intron 55.0%
CATGTCAGACCATCCGACAC+CGG - chr7_3:65608717-65608736 None:intergenic 55.0%
TTACGAGGAGCTCGTGAGAG+AGG + chr7_3:65610274-65610293 Msa1117300:CDS 55.0%
TACGAGGAGCTCGTGAGAGA+GGG + chr7_3:65610275-65610294 Msa1117300:CDS 55.0%
TCCTTGCAGGAGCTTCCAGC+AGG + chr7_3:65607132-65607151 Msa1117300:intron 60.0%
ACCTGCTGGAAGCTCCTGCA+AGG - chr7_3:65607136-65607155 None:intergenic 60.0%
AGGAGCTTCCAGCAGGTGAC+TGG + chr7_3:65607139-65607158 Msa1117300:intron 60.0%
ATGCAGTGCCAGTCACCTGC+TGG - chr7_3:65607150-65607169 None:intergenic 60.0%
! GACTGTAGGCCGGTGTCGGA+TGG + chr7_3:65608705-65608724 Msa1117300:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 65606510 65610327 65606510 ID=Msa1117300;Name=Msa1117300
chr7_3 mRNA 65606510 65610327 65606510 ID=Msa1117300-mRNA-1;Parent=Msa1117300;Name=Msa1117300-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|0|0|1|1|1|8|0|360
chr7_3 exon 65606510 65606641 65606510 ID=Msa1117300-mRNA-1:exon:15674;Parent=Msa1117300-mRNA-1
chr7_3 exon 65607141 65607246 65607141 ID=Msa1117300-mRNA-1:exon:15675;Parent=Msa1117300-mRNA-1
chr7_3 exon 65607533 65607606 65607533 ID=Msa1117300-mRNA-1:exon:15676;Parent=Msa1117300-mRNA-1
chr7_3 exon 65607886 65608088 65607886 ID=Msa1117300-mRNA-1:exon:15677;Parent=Msa1117300-mRNA-1
chr7_3 exon 65609171 65609257 65609171 ID=Msa1117300-mRNA-1:exon:15678;Parent=Msa1117300-mRNA-1
chr7_3 exon 65609357 65609456 65609357 ID=Msa1117300-mRNA-1:exon:15679;Parent=Msa1117300-mRNA-1
chr7_3 exon 65609690 65609903 65609690 ID=Msa1117300-mRNA-1:exon:15680;Parent=Msa1117300-mRNA-1
chr7_3 exon 65610161 65610327 65610161 ID=Msa1117300-mRNA-1:exon:15681;Parent=Msa1117300-mRNA-1
chr7_3 CDS 65606510 65606641 65606510 ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1
chr7_3 CDS 65607141 65607246 65607141 ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1
chr7_3 CDS 65607533 65607606 65607533 ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1
chr7_3 CDS 65607886 65608088 65607886 ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1
chr7_3 CDS 65609171 65609257 65609171 ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1
chr7_3 CDS 65609357 65609456 65609357 ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1
chr7_3 CDS 65609690 65609903 65609690 ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1
chr7_3 CDS 65610161 65610327 65610161 ID=Msa1117300-mRNA-1:cds;Parent=Msa1117300-mRNA-1
Gene Sequence

>Msa1117300

ATGGATCTGGAACCTCAAAGAGTGTTTAAAGACCTTAATGAGGATGCATGCGGTGTTTGTAAAGACGGAGGAGACTTGATCTGCTGTGATAGTTGTCCAGCAGTATTTCATCAAAGTTGCCTCAATATTAAAGAGCTTCCAGCAGGTGACTGGCACTGCATTCACTGCTCTTGTAAATTTTGTGGATCCTATCAAGAAGGAAGTGAAAATCCCGCTATTGGATGTGTCTTCAGTGCATATCACGTCAATTGTGTTGATGCCAACGGTGATGAGTTCAATCGTGAAAAGTTCTGTGGAAAAAGATGTCAACAGATACATCAGAGGTTTGAAATGCTTCTACGGATTAGATATGACATTGGAGATGGATTTTCTTGCACATTTTTGCGTAGATTACATGAAGTGGAAAACAAGAAGGGTGTTGCATTATCTGTAATGCATGAGTGTTTTAAACCCATTACTTTGGATCTTGGAGGTGAGAAGATGGACATGTTCCCCAGAATTCTAAGTAGCCATTGGTCAACATCCCGTGCTGTTGATTATGCCGGATTTTTTACTGTATTTCTAGAGAAAGGGGATGATACAATCTGTGTTGCTACTCTCAGGATTCATGGACATCAAATTGCAGAGATGCCATTTATTGGAACACGAGTTAGGTTTAGGAAACAAGGAATGTGCCGTAGACTTTTCAATGCCATTGAGTCGGCATTAAGCTATATGAATGTGGAGATGCTGGTCATTCCATCAGCGCTACAAGTGTTACACACTTGGACTTCCTCTTTTGGATTTGAGAAAGCTGACATGACTACAAAAGAATTGCTGAATAAGAAAAATGTGGTGCAATTCTATGGAGTGGAATTTCTCCAAAAGAAAATAGAAAAGTATAATCTTCCTGAACAAAATCTCACTTTCAATCAAGTCTTCAATTATCACAAGACTCAGAAAGCTATCAAGGAAGAGCGGTCTCTAAGAGAGTCTTGTATTGTCAGTGGAAGAACTTCAGGTCGCAGAAGACGAAGTTCTCCATATGAATTACGAGGAGCTCGTGAGAGAGGGAGTTCATCAAAATCAACGCCCGATTGTTGA

Protein sequence

>Msa1117300

MDLEPQRVFKDLNEDACGVCKDGGDLICCDSCPAVFHQSCLNIKELPAGDWHCIHCSCKFCGSYQEGSENPAIGCVFSAYHVNCVDANGDEFNREKFCGKRCQQIHQRFEMLLRIRYDIGDGFSCTFLRRLHEVENKKGVALSVMHECFKPITLDLGGEKMDMFPRILSSHWSTSRAVDYAGFFTVFLEKGDDTICVATLRIHGHQIAEMPFIGTRVRFRKQGMCRRLFNAIESALSYMNVEMLVIPSALQVLHTWTSSFGFEKADMTTKELLNKKNVVQFYGVEFLQKKIEKYNLPEQNLTFNQVFNYHKTQKAIKEERSLRESCIVSGRTSGRRRRSSPYELRGARERGSSSKSTPDC*