AlfalfaGEDB | Msa1117490

M. sativa cultivar zhongmu-4 / Msa1117490

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117490	XP_039683935.1	87.607	234	25	2	1	230	1	234	1.78e-141	405

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117490	A0A396H4J8	87.607	234	25	2	1	230	1	234	8.52e-142	405

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TFs/TRs:

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Gene ID	Type	Classification
Msa1117490	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117490	MtrunA17_Chr7g0255511	87.607	234	25	2	1	230	1	234	1.64e-145	405
Msa1117490	MtrunA17_Chr7g0225091	77.778	234	34	3	1	230	1	220	2.18e-127	358
Msa1117490	MtrunA17_Chr7g0225121	75.641	234	31	3	1	230	1	212	5.65e-123	347
Msa1117490	MtrunA17_Chr7g0222361	76.733	202	45	2	31	230	1	202	4.89e-114	324
Msa1117490	MtrunA17_Chr7g0222371	74.380	121	26	3	19	134	1	121	1.51e-60	186
Msa1117490	MtrunA17_Chr1g0149811	32.558	172	97	6	76	230	93	262	3.56e-11	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1117490	AT1G66140.1	29.121	182	99	4	76	230	82	260	5.27e-11	61.2

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Find 47 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATATGATTCAGCATGC+AGG	0.425567	7_3:+65891788	Msa1117490:CDS
AAGAAATGGAGAAATTTCTT+TGG	0.320928	7_3:-65891513	None:intergenic
AATATGTCTGAGATTGAAGT+TGG	0.464395	7_3:+65891914	Msa1117490:CDS
AATTACTCAAATGGTGATCA+AGG	0.411277	7_3:+65891704	Msa1117490:CDS
ACAATATGATTCAGCATGCA+GGG	0.561522	7_3:+65891789	Msa1117490:CDS
ACCATCTCTCCATTCCATAT+GGG	0.464694	7_3:+65891740	Msa1117490:CDS
ACTAGTCCACAGGCATTAGG+TGG	0.661075	7_3:+65891611	Msa1117490:CDS
AGAAATTTCTTTGGAAGAAT+TGG	0.283176	7_3:-65891504	None:intergenic
AGACAAAGAGACTCAAGAGG+AGG	0.673262	7_3:+65891982	Msa1117490:CDS
ATATATTAATCAAAGCTTAA+GGG	0.526886	7_3:-65892026	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGAGAGAAGTCTCAAAAAA+AGG	+	chr7_3:65891654-65891673	Msa1117490:CDS	30.0%
GCTTGGATAAATTACTCAAA+TGG	+	chr7_3:65891695-65891714	Msa1117490:CDS	30.0%
AATTACTCAAATGGTGATCA+AGG	+	chr7_3:65891704-65891723	Msa1117490:CDS	30.0%
ATTACTCAAATGGTGATCAA+GGG	+	chr7_3:65891705-65891724	Msa1117490:CDS	30.0%
ATTGCAACATATTTCAGAGA+TGG	+	chr7_3:65891847-65891866	Msa1117490:CDS	30.0%
GGAAAATCAGAACAAGAGAA+AGG	+	chr7_3:65891406-65891425	Msa1117490:CDS	35.0%
TGAATTCTGAGTTTCAGCAT+GGG	-	chr7_3:65891450-65891469	None:intergenic	35.0%
TTGAATTCTGAGTTTCAGCA+TGG	-	chr7_3:65891451-65891470	None:intergenic	35.0%
ATGCTGAAACTCAGAATTCA+AGG	+	chr7_3:65891450-65891469	Msa1117490:CDS	35.0%
TTGGATTCATTGTTGATCAC+AGG	+	chr7_3:65891540-65891559	Msa1117490:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	65891347	65892039	65891347	ID=Msa1117490;Name=Msa1117490
chr7_3	mRNA	65891347	65892039	65891347	ID=Msa1117490-mRNA-1;Parent=Msa1117490;Name=Msa1117490-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|230
chr7_3	exon	65891347	65892039	65891347	ID=Msa1117490-mRNA-1:exon:15809;Parent=Msa1117490-mRNA-1
chr7_3	CDS	65891347	65892039	65891347	ID=Msa1117490-mRNA-1:cds;Parent=Msa1117490-mRNA-1

Gene Sequence

>Msa1117490

ATGTGTAACAAGGGGAAGGAGAAGGTGAATGAAGAATCGGTAGCCAATTTGAAGATGATGGAAAATCAGAACAAGAGAAAGGCAATCGTGCTGGAAGAATCCCATGCTGAAACTCAGAATTCAAGGACTCCCCAAAAAGATGTTGAAGAAGAATCAACCAATTCTTCCAAAGAAATTTCTCCATTTCTTCTTTTTGGATTCATTGTTGATCACAGGAAAGGAATTCAAAAGGCTTACTCGTGCAAATTTTGTAGCAGAAAGTTCACTAGTCCACAGGCATTAGGTGGTCATCAAAATTCTCACAAATTAGAGAGAAGTCTCAAAAAAAGGATCCAAGCTTTTAACAATGCTTGGATAAATTACTCAAATGGTGATCAAGGGATTAGTCTAAACACCATCTCTCCATTCCATATGGGGTGTGGATATCAATATTGTGGATTTAACAATATGATTCAGCATGCAGGGTCATCAAACTTTTATGCAGGGAATTTGTATGGTGCATTGCAACATATTTCAGAGATGGATGAAGCAGATGAAGCTAATCAAAGCATAATGAGTCAAAAAGTTAATATGTCTGAGATTGAAGTTGGTTCAATTTCAAAGGGAGGCGCTGCTAGTGATGAAGTTGATCAGGAAGACAAAGAGACTCAAGAGGAGGAAGAAACCAAGATTGATTTGACCCTTAAGCTTTGA

Protein sequence

>Msa1117490

MCNKGKEKVNEESVANLKMMENQNKRKAIVLEESHAETQNSRTPQKDVEEESTNSSKEISPFLLFGFIVDHRKGIQKAYSCKFCSRKFTSPQALGGHQNSHKLERSLKKRIQAFNNAWINYSNGDQGISLNTISPFHMGCGYQYCGFNNMIQHAGSSNFYAGNLYGALQHISEMDEADEANQSIMSQKVNMSEIEVGSISKGGAASDEVDQEDKETQEEEETKIDLTLKL*