Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117500 | XP_039683934.1 | 92.105 | 266 | 16 | 3 | 1 | 264 | 1 | 263 | 1.65e-162 | 463 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117500 | A0A396H587 | 92.157 | 255 | 15 | 3 | 12 | 264 | 1 | 252 | 1.67e-154 | 441 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1117500 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117500 | MtrunA17_Chr7g0255491 | 92.157 | 255 | 15 | 3 | 12 | 264 | 1 | 252 | 3.21e-158 | 441 |
| Msa1117500 | MtrunA17_Chr3g0081141 | 28.704 | 216 | 136 | 6 | 78 | 285 | 98 | 303 | 4.05e-15 | 73.9 |
| Msa1117500 | MtrunA17_Chr2g0310101 | 40.816 | 98 | 51 | 4 | 78 | 168 | 59 | 156 | 3.28e-14 | 70.1 |
| Msa1117500 | MtrunA17_Chr7g0239711 | 41.111 | 90 | 46 | 3 | 76 | 158 | 55 | 144 | 1.34e-12 | 65.5 |
| Msa1117500 | MtrunA17_Chr7g0224221 | 44.286 | 70 | 29 | 2 | 78 | 137 | 148 | 217 | 6.45e-12 | 65.1 |
| Msa1117500 | MtrunA17_Chr5g0396031 | 40.449 | 89 | 35 | 3 | 77 | 157 | 45 | 123 | 6.70e-12 | 65.1 |
| Msa1117500 | MtrunA17_Chr3g0079671 | 27.826 | 230 | 122 | 9 | 78 | 285 | 98 | 305 | 2.22e-11 | 63.2 |
| Msa1117500 | MtrunA17_Chr3g0081131 | 46.774 | 62 | 30 | 1 | 78 | 136 | 98 | 159 | 2.41e-11 | 63.2 |
| Msa1117500 | MtrunA17_Chr1g0161901 | 40.000 | 105 | 49 | 5 | 11 | 110 | 34 | 129 | 4.20e-11 | 62.0 |
| Msa1117500 | MtrunA17_Chr8g0376021 | 52.727 | 55 | 24 | 1 | 58 | 110 | 40 | 94 | 5.69e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117500 | AT5G25160.1 | 38.053 | 113 | 52 | 3 | 70 | 182 | 51 | 145 | 2.49e-11 | 62.8 |
Find 102 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTGGGATGAATAATTTA+TGG | 0.162779 | 7_3:+65896329 | Msa1117500:CDS |
| TCCCTTGCAACACCACAATT+TGG | 0.181385 | 7_3:+65896313 | Msa1117500:CDS |
| TGAACAATTCCTTGCCTTCT+TGG | 0.192209 | 7_3:+65896200 | Msa1117500:CDS |
| CGTGATGCAGGAGGTGTATT+TGG | 0.246247 | 7_3:-65896265 | None:intergenic |
| TCAGAAGATGCCTCAGAAAT+TGG | 0.265731 | 7_3:-65896439 | None:intergenic |
| TGGCTTGGTGGTTCATCTTC+CGG | 0.295672 | 7_3:+65896220 | Msa1117500:CDS |
| CCCACAGTGTTTGATCTTTG+TGG | 0.295932 | 7_3:-65896382 | None:intergenic |
| TTGGAGAATGGTGAGCATTC+AGG | 0.322095 | 7_3:+65895878 | Msa1117500:CDS |
| CAAGTTCAGTTCCTCCTCAT+TGG | 0.324355 | 7_3:-65896536 | None:intergenic |
| AATTCCTTGCCTTCTTGGCT+TGG | 0.353374 | 7_3:+65896205 | Msa1117500:CDS |
| CCCTTGCAACACCACAATTT+GGG | 0.353563 | 7_3:+65896314 | Msa1117500:CDS |
| GAGGTTGGTGGTGATGTCTT+TGG | 0.357363 | 7_3:-65895788 | None:intergenic |
| ATTTGGGATGAATAATTTAT+GGG | 0.357825 | 7_3:+65896330 | Msa1117500:CDS |
| AAGTTCAGTTCCTCCTCATT+GGG | 0.363891 | 7_3:-65896535 | None:intergenic |
| TCCTTGCCTTCTTGGCTTGG+TGG | 0.368207 | 7_3:+65896208 | Msa1117500:CDS |
| CTCACCATTCTCCAAGGGTT+TGG | 0.371444 | 7_3:-65895870 | None:intergenic |
| TCATTTCTGTCATCTTCAAT+AGG | 0.380585 | 7_3:-65896505 | None:intergenic |
| TTCACTTGCGGCGCAGGTGG+AGG | 0.390432 | 7_3:-65895926 | None:intergenic |
| AAGATCAAACACTGTGGGTT+TGG | 0.398899 | 7_3:+65896387 | Msa1117500:CDS |
| GGATATTTGATCGATACCTT+AGG | 0.410338 | 7_3:-65896084 | None:intergenic |
| TGTTCACATGGGAACCAATT+GGG | 0.426738 | 7_3:-65896183 | None:intergenic |
| TTCCCCACTTCTCAAGCGCT+TGG | 0.427846 | 7_3:+65895980 | Msa1117500:CDS |
| GCGCAAAATGATGGAGGATT+CGG | 0.431644 | 7_3:+65895739 | Msa1117500:CDS |
| AATTCCTTCACTTGCGGCGC+AGG | 0.435850 | 7_3:-65895932 | None:intergenic |
| TCCTTCACTTGCGGCGCAGG+TGG | 0.438683 | 7_3:-65895929 | None:intergenic |
| TTGTTCACATGGGAACCAAT+TGG | 0.439864 | 7_3:-65896184 | None:intergenic |
| CAATGAGGAGGAACTGAACT+TGG | 0.445260 | 7_3:+65896537 | Msa1117500:CDS |
| GGTTCATCTTCCGGTGGCTA+TGG | 0.445682 | 7_3:+65896229 | Msa1117500:CDS |
| GGAGAGCTTGAAAATTGATA+AGG | 0.446609 | 7_3:-65896115 | None:intergenic |
| AATTTCTGAGGCATCTTCTG+AGG | 0.448060 | 7_3:+65896441 | Msa1117500:CDS |
| GATTTCTTGACCTTGAGGCT+TGG | 0.452474 | 7_3:+65895827 | Msa1117500:CDS |
| GCTCACGCTTATGAGCGTTT+TGG | 0.454295 | 7_3:-65896009 | None:intergenic |
| TTCTTGACCTTGAGGCTTGG+CGG | 0.462476 | 7_3:+65895830 | Msa1117500:CDS |
| CCCACTTCTCAAGCGCTTGG+AGG | 0.464114 | 7_3:+65895983 | Msa1117500:CDS |
| GCTAGCCTGGCCAACCCAAT+TGG | 0.470467 | 7_3:+65896169 | Msa1117500:CDS |
| CCAACCTCTGGATCGGATGC+TGG | 0.471452 | 7_3:+65895803 | Msa1117500:CDS |
| ATTCTCCAAGGGTTTGGAAG+TGG | 0.473353 | 7_3:-65895864 | None:intergenic |
| GAGAGCTTGAAAATTGATAA+GGG | 0.474183 | 7_3:-65896114 | None:intergenic |
| GGGAACCAATTGGGTTGGCC+AGG | 0.476365 | 7_3:-65896174 | None:intergenic |
| ATATTTCCGTAGTGCTAGCC+TGG | 0.476473 | 7_3:+65896156 | Msa1117500:CDS |
| AAACCTCAAGCGCAAAATGA+TGG | 0.477017 | 7_3:+65895730 | Msa1117500:CDS |
| GATATTTGATCGATACCTTA+GGG | 0.478593 | 7_3:-65896083 | None:intergenic |
| CTTGAAAATTGATAAGGGTA+TGG | 0.487010 | 7_3:-65896109 | None:intergenic |
| TTCGGAGCAAGAGTCGAAAT+CGG | 0.492293 | 7_3:+65895757 | Msa1117500:CDS |
| GTGTTTGATCTTTGTGGAGT+TGG | 0.498368 | 7_3:-65896376 | None:intergenic |
| GGCATCACAAATCGTGATGC+AGG | 0.498721 | 7_3:-65896277 | None:intergenic |
| AAGACATCACCACCAACCTC+TGG | 0.499816 | 7_3:+65895791 | Msa1117500:CDS |
| TCCCAAATTGTGGTGTTGCA+AGG | 0.499889 | 7_3:-65896315 | None:intergenic |
| TTCTCCAAGGGTTTGGAAGT+GGG | 0.501108 | 7_3:-65895863 | None:intergenic |
| TCATCTTCCGGTGGCTATGG+AGG | 0.508174 | 7_3:+65896232 | Msa1117500:CDS |
| ACTTCCAAACCCTTGGAGAA+TGG | 0.510882 | 7_3:+65895866 | Msa1117500:CDS |
| ATTTCTGAGGCATCTTCTGA+GGG | 0.511868 | 7_3:+65896442 | Msa1117500:CDS |
| TCCTCCAAGCGCTTGAGAAG+TGG | 0.512717 | 7_3:-65895984 | None:intergenic |
| GCAAGAGTCGAAATCGGAGA+AGG | 0.519914 | 7_3:+65895763 | Msa1117500:CDS |
| AAATCCCACTTCCAAACCCT+TGG | 0.521354 | 7_3:+65895859 | Msa1117500:CDS |
| AAAATTGATAAGGGTATGGA+AGG | 0.527390 | 7_3:-65896105 | None:intergenic |
| GAAGATGCCTCAGAAATTGG+AGG | 0.529710 | 7_3:-65896436 | None:intergenic |
| GATGAACCACCAAGCCAAGA+AGG | 0.530980 | 7_3:-65896214 | None:intergenic |
| CTGGCGATTTCTTGACCTTG+AGG | 0.533323 | 7_3:+65895822 | Msa1117500:CDS |
| CACATGGGAACCAATTGGGT+TGG | 0.534413 | 7_3:-65896179 | None:intergenic |
| TCCACCTGCGCCGCAAGTGA+AGG | 0.535880 | 7_3:+65895928 | Msa1117500:CDS |
| TTGACCTTGAGGCTTGGCGG+TGG | 0.537816 | 7_3:+65895833 | Msa1117500:CDS |
| CCTCCAAGCGCTTGAGAAGT+GGG | 0.545861 | 7_3:-65895983 | None:intergenic |
| TACGGAAATATGAATACCCT+TGG | 0.547864 | 7_3:-65896144 | None:intergenic |
| ATGAATAATTTATGGGGTGG+AGG | 0.548808 | 7_3:+65896337 | Msa1117500:CDS |
| CATCTTCCGGTGGCTATGGA+GGG | 0.549526 | 7_3:+65896233 | Msa1117500:CDS |
| GGGATGAATAATTTATGGGG+TGG | 0.553703 | 7_3:+65896334 | Msa1117500:CDS |
| AATGGAAGAACAAAGGAGAG+AGG | 0.557192 | 7_3:+65896045 | Msa1117500:CDS |
| TATGAATACCCTTGGTAGTG+TGG | 0.561783 | 7_3:-65896136 | None:intergenic |
| CCCAAATTGTGGTGTTGCAA+GGG | 0.562024 | 7_3:-65896314 | None:intergenic |
| AAATTATTCATCCCAAATTG+TGG | 0.569543 | 7_3:-65896325 | None:intergenic |
| TGAATGCTCACCATTCTCCA+AGG | 0.576662 | 7_3:-65895876 | None:intergenic |
| ACCACCAAGCCAAGAAGGCA+AGG | 0.577515 | 7_3:-65896209 | None:intergenic |
| ATGTGATCGATTCAGCCCTA+AGG | 0.581100 | 7_3:+65896068 | Msa1117500:CDS |
| CAAGCTCTCCACACTACCAA+GGG | 0.581296 | 7_3:+65896128 | Msa1117500:CDS |
| CAAGAGAATTCCTTCACTTG+CGG | 0.584375 | 7_3:-65895938 | None:intergenic |
| GCAAGGGATGAATTTGACAT+TGG | 0.586827 | 7_3:-65896298 | None:intergenic |
| ATCACCACCAACCTCTGGAT+CGG | 0.589780 | 7_3:+65895796 | Msa1117500:CDS |
| GAATGCTCACCATTCTCCAA+GGG | 0.590384 | 7_3:-65895875 | None:intergenic |
| CCAGCATCCGATCCAGAGGT+TGG | 0.592460 | 7_3:-65895803 | None:intergenic |
| TCAAGCTCTCCACACTACCA+AGG | 0.596295 | 7_3:+65896127 | Msa1117500:CDS |
| TTTGGGATGAATAATTTATG+GGG | 0.599177 | 7_3:+65896331 | Msa1117500:CDS |
| TGTGCCACCGCCAAGCCTCA+AGG | 0.601323 | 7_3:-65895837 | None:intergenic |
| AAGATGCCTCAGAAATTGGA+GGG | 0.602431 | 7_3:-65896435 | None:intergenic |
| GCATCCGATCCAGAGGTTGG+TGG | 0.602933 | 7_3:-65895800 | None:intergenic |
| CTTGGTGGTTCATCTTCCGG+TGG | 0.606406 | 7_3:+65896223 | Msa1117500:CDS |
| GGTTGGCCAGGCTAGCACTA+CGG | 0.608827 | 7_3:-65896162 | None:intergenic |
| TATTGAAGATGACAGAAATG+AGG | 0.610273 | 7_3:+65896507 | Msa1117500:CDS |
| AAGGCAAGGAATTGTTCACA+TGG | 0.612872 | 7_3:-65896195 | None:intergenic |
| ATACATCCCTCCATAGCCAC+CGG | 0.627780 | 7_3:-65896239 | None:intergenic |
| ATCGCCAGCATCCGATCCAG+AGG | 0.630563 | 7_3:-65895807 | None:intergenic |
| CCACAAAGATCAAACACTGT+GGG | 0.631128 | 7_3:+65896382 | Msa1117500:CDS |
| CTCCAAGCGCTTGAGAAGTG+GGG | 0.636012 | 7_3:-65895982 | None:intergenic |
| TCAAACCCCTCCAATTTCTG+AGG | 0.642241 | 7_3:+65896429 | Msa1117500:CDS |
| AGATGCCTCAGAAATTGGAG+GGG | 0.652285 | 7_3:-65896434 | None:intergenic |
| TGAGGCTAATCCCAATGAGG+AGG | 0.655080 | 7_3:+65896525 | Msa1117500:CDS |
| CCTCAAGCGCAAAATGATGG+AGG | 0.656497 | 7_3:+65895733 | Msa1117500:CDS |
| ATCACAAATCGTGATGCAGG+AGG | 0.664503 | 7_3:-65896274 | None:intergenic |
| TCTTCAATAGGATCATGAGA+AGG | 0.673431 | 7_3:-65896493 | None:intergenic |
| AAATGAGGCTAATCCCAATG+AGG | 0.702908 | 7_3:+65896522 | Msa1117500:CDS |
| AGGCAAGGAATTGTTCACAT+GGG | 0.705162 | 7_3:-65896194 | None:intergenic |
| TCCACAAAGATCAAACACTG+TGG | 0.713784 | 7_3:+65896381 | Msa1117500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGGGATGAATAATTTA+TGG | + | chr7_3:65896329-65896348 | Msa1117500:CDS | 20.0% |
| !!! | ATTTGGGATGAATAATTTAT+GGG | + | chr7_3:65896330-65896349 | Msa1117500:CDS | 20.0% |
| !!! | AATTTGGGATGAATAATTTA+TGG | + | chr7_3:65896329-65896348 | Msa1117500:CDS | 20.0% |
| !!! | ATTTGGGATGAATAATTTAT+GGG | + | chr7_3:65896330-65896349 | Msa1117500:CDS | 20.0% |
| ! | TCAAAAAAATGGAAGAACAA+AGG | + | chr7_3:65896038-65896057 | Msa1117500:CDS | 25.0% |
| ! | AAATTATTCATCCCAAATTG+TGG | - | chr7_3:65896328-65896347 | None:intergenic | 25.0% |
| !! | TTTGGGATGAATAATTTATG+GGG | + | chr7_3:65896331-65896350 | Msa1117500:CDS | 25.0% |
| ! | TCAAAAAAATGGAAGAACAA+AGG | + | chr7_3:65896038-65896057 | Msa1117500:CDS | 25.0% |
| ! | AAATTATTCATCCCAAATTG+TGG | - | chr7_3:65896328-65896347 | None:intergenic | 25.0% |
| !! | TTTGGGATGAATAATTTATG+GGG | + | chr7_3:65896331-65896350 | Msa1117500:CDS | 25.0% |
| GATATTTGATCGATACCTTA+GGG | - | chr7_3:65896086-65896105 | None:intergenic | 30.0% | |
| ! | AAAATTGATAAGGGTATGGA+AGG | - | chr7_3:65896108-65896127 | None:intergenic | 30.0% |
| CTTGAAAATTGATAAGGGTA+TGG | - | chr7_3:65896112-65896131 | None:intergenic | 30.0% | |
| GAGAGCTTGAAAATTGATAA+GGG | - | chr7_3:65896117-65896136 | None:intergenic | 30.0% | |
| TCATTTCTGTCATCTTCAAT+AGG | - | chr7_3:65896508-65896527 | None:intergenic | 30.0% | |
| TATTGAAGATGACAGAAATG+AGG | + | chr7_3:65896507-65896526 | Msa1117500:CDS | 30.0% | |
| GATATTTGATCGATACCTTA+GGG | - | chr7_3:65896086-65896105 | None:intergenic | 30.0% | |
| ! | AAAATTGATAAGGGTATGGA+AGG | - | chr7_3:65896108-65896127 | None:intergenic | 30.0% |
| CTTGAAAATTGATAAGGGTA+TGG | - | chr7_3:65896112-65896131 | None:intergenic | 30.0% | |
| GAGAGCTTGAAAATTGATAA+GGG | - | chr7_3:65896117-65896136 | None:intergenic | 30.0% | |
| TCATTTCTGTCATCTTCAAT+AGG | - | chr7_3:65896508-65896527 | None:intergenic | 30.0% | |
| TATTGAAGATGACAGAAATG+AGG | + | chr7_3:65896507-65896526 | Msa1117500:CDS | 30.0% | |
| TGAGCGTGTCTTCAAAAAAA+TGG | + | chr7_3:65896027-65896046 | Msa1117500:CDS | 35.0% | |
| GGATATTTGATCGATACCTT+AGG | - | chr7_3:65896087-65896106 | None:intergenic | 35.0% | |
| GGAGAGCTTGAAAATTGATA+AGG | - | chr7_3:65896118-65896137 | None:intergenic | 35.0% | |
| TACGGAAATATGAATACCCT+TGG | - | chr7_3:65896147-65896166 | None:intergenic | 35.0% | |
| ATGAATAATTTATGGGGTGG+AGG | + | chr7_3:65896337-65896356 | Msa1117500:CDS | 35.0% | |
| TCTTCAATAGGATCATGAGA+AGG | - | chr7_3:65896496-65896515 | None:intergenic | 35.0% | |
| TGAGCGTGTCTTCAAAAAAA+TGG | + | chr7_3:65896027-65896046 | Msa1117500:CDS | 35.0% | |
| GGATATTTGATCGATACCTT+AGG | - | chr7_3:65896087-65896106 | None:intergenic | 35.0% | |
| GGAGAGCTTGAAAATTGATA+AGG | - | chr7_3:65896118-65896137 | None:intergenic | 35.0% | |
| TACGGAAATATGAATACCCT+TGG | - | chr7_3:65896147-65896166 | None:intergenic | 35.0% | |
| ATGAATAATTTATGGGGTGG+AGG | + | chr7_3:65896337-65896356 | Msa1117500:CDS | 35.0% | |
| TCTTCAATAGGATCATGAGA+AGG | - | chr7_3:65896496-65896515 | None:intergenic | 35.0% | |
| AAACCTCAAGCGCAAAATGA+TGG | + | chr7_3:65895730-65895749 | Msa1117500:CDS | 40.0% | |
| CAAGAGAATTCCTTCACTTG+CGG | - | chr7_3:65895941-65895960 | None:intergenic | 40.0% | |
| AATGGAAGAACAAAGGAGAG+AGG | + | chr7_3:65896045-65896064 | Msa1117500:CDS | 40.0% | |
| !! | TATGAATACCCTTGGTAGTG+TGG | - | chr7_3:65896139-65896158 | None:intergenic | 40.0% |
| TGTTCACATGGGAACCAATT+GGG | - | chr7_3:65896186-65896205 | None:intergenic | 40.0% | |
| TTGTTCACATGGGAACCAAT+TGG | - | chr7_3:65896187-65896206 | None:intergenic | 40.0% | |
| AGGCAAGGAATTGTTCACAT+GGG | - | chr7_3:65896197-65896216 | None:intergenic | 40.0% | |
| AAGGCAAGGAATTGTTCACA+TGG | - | chr7_3:65896198-65896217 | None:intergenic | 40.0% | |
| TGAACAATTCCTTGCCTTCT+TGG | + | chr7_3:65896200-65896219 | Msa1117500:CDS | 40.0% | |
| GCAAGGGATGAATTTGACAT+TGG | - | chr7_3:65896301-65896320 | None:intergenic | 40.0% | |
| GGGATGAATAATTTATGGGG+TGG | + | chr7_3:65896334-65896353 | Msa1117500:CDS | 40.0% | |
| GTGTTTGATCTTTGTGGAGT+TGG | - | chr7_3:65896379-65896398 | None:intergenic | 40.0% | |
| TCCACAAAGATCAAACACTG+TGG | + | chr7_3:65896381-65896400 | Msa1117500:CDS | 40.0% | |
| CCACAAAGATCAAACACTGT+GGG | + | chr7_3:65896382-65896401 | Msa1117500:CDS | 40.0% | |
| AAGATCAAACACTGTGGGTT+TGG | + | chr7_3:65896387-65896406 | Msa1117500:CDS | 40.0% | |
| AAGATGCCTCAGAAATTGGA+GGG | - | chr7_3:65896438-65896457 | None:intergenic | 40.0% | |
| TCAGAAGATGCCTCAGAAAT+TGG | - | chr7_3:65896442-65896461 | None:intergenic | 40.0% | |
| !! | AATTTCTGAGGCATCTTCTG+AGG | + | chr7_3:65896441-65896460 | Msa1117500:CDS | 40.0% |
| !! | ATTTCTGAGGCATCTTCTGA+GGG | + | chr7_3:65896442-65896461 | Msa1117500:CDS | 40.0% |
| AAATGAGGCTAATCCCAATG+AGG | + | chr7_3:65896522-65896541 | Msa1117500:CDS | 40.0% | |
| AAGTTCAGTTCCTCCTCATT+GGG | - | chr7_3:65896538-65896557 | None:intergenic | 40.0% | |
| AAACCTCAAGCGCAAAATGA+TGG | + | chr7_3:65895730-65895749 | Msa1117500:CDS | 40.0% | |
| CAAGAGAATTCCTTCACTTG+CGG | - | chr7_3:65895941-65895960 | None:intergenic | 40.0% | |
| AATGGAAGAACAAAGGAGAG+AGG | + | chr7_3:65896045-65896064 | Msa1117500:CDS | 40.0% | |
| !! | TATGAATACCCTTGGTAGTG+TGG | - | chr7_3:65896139-65896158 | None:intergenic | 40.0% |
| TGTTCACATGGGAACCAATT+GGG | - | chr7_3:65896186-65896205 | None:intergenic | 40.0% | |
| TTGTTCACATGGGAACCAAT+TGG | - | chr7_3:65896187-65896206 | None:intergenic | 40.0% | |
| AGGCAAGGAATTGTTCACAT+GGG | - | chr7_3:65896197-65896216 | None:intergenic | 40.0% | |
| AAGGCAAGGAATTGTTCACA+TGG | - | chr7_3:65896198-65896217 | None:intergenic | 40.0% | |
| TGAACAATTCCTTGCCTTCT+TGG | + | chr7_3:65896200-65896219 | Msa1117500:CDS | 40.0% | |
| GCAAGGGATGAATTTGACAT+TGG | - | chr7_3:65896301-65896320 | None:intergenic | 40.0% | |
| GGGATGAATAATTTATGGGG+TGG | + | chr7_3:65896334-65896353 | Msa1117500:CDS | 40.0% | |
| GTGTTTGATCTTTGTGGAGT+TGG | - | chr7_3:65896379-65896398 | None:intergenic | 40.0% | |
| TCCACAAAGATCAAACACTG+TGG | + | chr7_3:65896381-65896400 | Msa1117500:CDS | 40.0% | |
| CCACAAAGATCAAACACTGT+GGG | + | chr7_3:65896382-65896401 | Msa1117500:CDS | 40.0% | |
| AAGATCAAACACTGTGGGTT+TGG | + | chr7_3:65896387-65896406 | Msa1117500:CDS | 40.0% | |
| AAGATGCCTCAGAAATTGGA+GGG | - | chr7_3:65896438-65896457 | None:intergenic | 40.0% | |
| TCAGAAGATGCCTCAGAAAT+TGG | - | chr7_3:65896442-65896461 | None:intergenic | 40.0% | |
| !! | AATTTCTGAGGCATCTTCTG+AGG | + | chr7_3:65896441-65896460 | Msa1117500:CDS | 40.0% |
| !! | ATTTCTGAGGCATCTTCTGA+GGG | + | chr7_3:65896442-65896461 | Msa1117500:CDS | 40.0% |
| AAATGAGGCTAATCCCAATG+AGG | + | chr7_3:65896522-65896541 | Msa1117500:CDS | 40.0% | |
| AAGTTCAGTTCCTCCTCATT+GGG | - | chr7_3:65896538-65896557 | None:intergenic | 40.0% | |
| ! | GCGCAAAATGATGGAGGATT+CGG | + | chr7_3:65895739-65895758 | Msa1117500:CDS | 45.0% |
| TTCGGAGCAAGAGTCGAAAT+CGG | + | chr7_3:65895757-65895776 | Msa1117500:CDS | 45.0% | |
| GATTTCTTGACCTTGAGGCT+TGG | + | chr7_3:65895827-65895846 | Msa1117500:CDS | 45.0% | |
| AAATCCCACTTCCAAACCCT+TGG | + | chr7_3:65895859-65895878 | Msa1117500:CDS | 45.0% | |
| TTCTCCAAGGGTTTGGAAGT+GGG | - | chr7_3:65895866-65895885 | None:intergenic | 45.0% | |
| ATTCTCCAAGGGTTTGGAAG+TGG | - | chr7_3:65895867-65895886 | None:intergenic | 45.0% | |
| ACTTCCAAACCCTTGGAGAA+TGG | + | chr7_3:65895866-65895885 | Msa1117500:CDS | 45.0% | |
| GAATGCTCACCATTCTCCAA+GGG | - | chr7_3:65895878-65895897 | None:intergenic | 45.0% | |
| TGAATGCTCACCATTCTCCA+AGG | - | chr7_3:65895879-65895898 | None:intergenic | 45.0% | |
| TTGGAGAATGGTGAGCATTC+AGG | + | chr7_3:65895878-65895897 | Msa1117500:CDS | 45.0% | |
| ! | ATGTGATCGATTCAGCCCTA+AGG | + | chr7_3:65896068-65896087 | Msa1117500:CDS | 45.0% |
| ATATTTCCGTAGTGCTAGCC+TGG | + | chr7_3:65896156-65896175 | Msa1117500:CDS | 45.0% | |
| AATTCCTTGCCTTCTTGGCT+TGG | + | chr7_3:65896205-65896224 | Msa1117500:CDS | 45.0% | |
| ATCACAAATCGTGATGCAGG+AGG | - | chr7_3:65896277-65896296 | None:intergenic | 45.0% | |
| TCCCTTGCAACACCACAATT+TGG | + | chr7_3:65896313-65896332 | Msa1117500:CDS | 45.0% | |
| !! | CCCAAATTGTGGTGTTGCAA+GGG | - | chr7_3:65896317-65896336 | None:intergenic | 45.0% |
| CCCTTGCAACACCACAATTT+GGG | + | chr7_3:65896314-65896333 | Msa1117500:CDS | 45.0% | |
| !! | TCCCAAATTGTGGTGTTGCA+AGG | - | chr7_3:65896318-65896337 | None:intergenic | 45.0% |
| CCCACAGTGTTTGATCTTTG+TGG | - | chr7_3:65896385-65896404 | None:intergenic | 45.0% | |
| TCAAACCCCTCCAATTTCTG+AGG | + | chr7_3:65896429-65896448 | Msa1117500:CDS | 45.0% | |
| AGATGCCTCAGAAATTGGAG+GGG | - | chr7_3:65896437-65896456 | None:intergenic | 45.0% | |
| GAAGATGCCTCAGAAATTGG+AGG | - | chr7_3:65896439-65896458 | None:intergenic | 45.0% | |
| CAAGTTCAGTTCCTCCTCAT+TGG | - | chr7_3:65896539-65896558 | None:intergenic | 45.0% | |
| CAATGAGGAGGAACTGAACT+TGG | + | chr7_3:65896537-65896556 | Msa1117500:CDS | 45.0% | |
| ! | GCGCAAAATGATGGAGGATT+CGG | + | chr7_3:65895739-65895758 | Msa1117500:CDS | 45.0% |
| TTCGGAGCAAGAGTCGAAAT+CGG | + | chr7_3:65895757-65895776 | Msa1117500:CDS | 45.0% | |
| GATTTCTTGACCTTGAGGCT+TGG | + | chr7_3:65895827-65895846 | Msa1117500:CDS | 45.0% | |
| AAATCCCACTTCCAAACCCT+TGG | + | chr7_3:65895859-65895878 | Msa1117500:CDS | 45.0% | |
| TTCTCCAAGGGTTTGGAAGT+GGG | - | chr7_3:65895866-65895885 | None:intergenic | 45.0% | |
| ATTCTCCAAGGGTTTGGAAG+TGG | - | chr7_3:65895867-65895886 | None:intergenic | 45.0% | |
| ACTTCCAAACCCTTGGAGAA+TGG | + | chr7_3:65895866-65895885 | Msa1117500:CDS | 45.0% | |
| GAATGCTCACCATTCTCCAA+GGG | - | chr7_3:65895878-65895897 | None:intergenic | 45.0% | |
| TGAATGCTCACCATTCTCCA+AGG | - | chr7_3:65895879-65895898 | None:intergenic | 45.0% | |
| TTGGAGAATGGTGAGCATTC+AGG | + | chr7_3:65895878-65895897 | Msa1117500:CDS | 45.0% | |
| ! | ATGTGATCGATTCAGCCCTA+AGG | + | chr7_3:65896068-65896087 | Msa1117500:CDS | 45.0% |
| ATATTTCCGTAGTGCTAGCC+TGG | + | chr7_3:65896156-65896175 | Msa1117500:CDS | 45.0% | |
| AATTCCTTGCCTTCTTGGCT+TGG | + | chr7_3:65896205-65896224 | Msa1117500:CDS | 45.0% | |
| ATCACAAATCGTGATGCAGG+AGG | - | chr7_3:65896277-65896296 | None:intergenic | 45.0% | |
| TCCCTTGCAACACCACAATT+TGG | + | chr7_3:65896313-65896332 | Msa1117500:CDS | 45.0% | |
| !! | CCCAAATTGTGGTGTTGCAA+GGG | - | chr7_3:65896317-65896336 | None:intergenic | 45.0% |
| CCCTTGCAACACCACAATTT+GGG | + | chr7_3:65896314-65896333 | Msa1117500:CDS | 45.0% | |
| !! | TCCCAAATTGTGGTGTTGCA+AGG | - | chr7_3:65896318-65896337 | None:intergenic | 45.0% |
| CCCACAGTGTTTGATCTTTG+TGG | - | chr7_3:65896385-65896404 | None:intergenic | 45.0% | |
| TCAAACCCCTCCAATTTCTG+AGG | + | chr7_3:65896429-65896448 | Msa1117500:CDS | 45.0% | |
| AGATGCCTCAGAAATTGGAG+GGG | - | chr7_3:65896437-65896456 | None:intergenic | 45.0% | |
| GAAGATGCCTCAGAAATTGG+AGG | - | chr7_3:65896439-65896458 | None:intergenic | 45.0% | |
| CAAGTTCAGTTCCTCCTCAT+TGG | - | chr7_3:65896539-65896558 | None:intergenic | 45.0% | |
| CAATGAGGAGGAACTGAACT+TGG | + | chr7_3:65896537-65896556 | Msa1117500:CDS | 45.0% | |
| ! | CCTCCATCATTTTGCGCTTG+AGG | - | chr7_3:65895736-65895755 | None:intergenic | 50.0% |
| CCTCAAGCGCAAAATGATGG+AGG | + | chr7_3:65895733-65895752 | Msa1117500:CDS | 50.0% | |
| GCAAGAGTCGAAATCGGAGA+AGG | + | chr7_3:65895763-65895782 | Msa1117500:CDS | 50.0% | |
| !! | GAGGTTGGTGGTGATGTCTT+TGG | - | chr7_3:65895791-65895810 | None:intergenic | 50.0% |
| AAGACATCACCACCAACCTC+TGG | + | chr7_3:65895791-65895810 | Msa1117500:CDS | 50.0% | |
| ATCACCACCAACCTCTGGAT+CGG | + | chr7_3:65895796-65895815 | Msa1117500:CDS | 50.0% | |
| CTGGCGATTTCTTGACCTTG+AGG | + | chr7_3:65895822-65895841 | Msa1117500:CDS | 50.0% | |
| TTCTTGACCTTGAGGCTTGG+CGG | + | chr7_3:65895830-65895849 | Msa1117500:CDS | 50.0% | |
| CTCACCATTCTCCAAGGGTT+TGG | - | chr7_3:65895873-65895892 | None:intergenic | 50.0% | |
| ! | GCTCACGCTTATGAGCGTTT+TGG | - | chr7_3:65896012-65896031 | None:intergenic | 50.0% |
| TCAAGCTCTCCACACTACCA+AGG | + | chr7_3:65896127-65896146 | Msa1117500:CDS | 50.0% | |
| CAAGCTCTCCACACTACCAA+GGG | + | chr7_3:65896128-65896147 | Msa1117500:CDS | 50.0% | |
| CACATGGGAACCAATTGGGT+TGG | - | chr7_3:65896182-65896201 | None:intergenic | 50.0% | |
| GATGAACCACCAAGCCAAGA+AGG | - | chr7_3:65896217-65896236 | None:intergenic | 50.0% | |
| !! | TGGCTTGGTGGTTCATCTTC+CGG | + | chr7_3:65896220-65896239 | Msa1117500:CDS | 50.0% |
| ATACATCCCTCCATAGCCAC+CGG | - | chr7_3:65896242-65896261 | None:intergenic | 50.0% | |
| ! | CGTGATGCAGGAGGTGTATT+TGG | - | chr7_3:65896268-65896287 | None:intergenic | 50.0% |
| GGCATCACAAATCGTGATGC+AGG | - | chr7_3:65896280-65896299 | None:intergenic | 50.0% | |
| TGAGGCTAATCCCAATGAGG+AGG | + | chr7_3:65896525-65896544 | Msa1117500:CDS | 50.0% | |
| ! | CCTCCATCATTTTGCGCTTG+AGG | - | chr7_3:65895736-65895755 | None:intergenic | 50.0% |
| CCTCAAGCGCAAAATGATGG+AGG | + | chr7_3:65895733-65895752 | Msa1117500:CDS | 50.0% | |
| GCAAGAGTCGAAATCGGAGA+AGG | + | chr7_3:65895763-65895782 | Msa1117500:CDS | 50.0% | |
| !! | GAGGTTGGTGGTGATGTCTT+TGG | - | chr7_3:65895791-65895810 | None:intergenic | 50.0% |
| AAGACATCACCACCAACCTC+TGG | + | chr7_3:65895791-65895810 | Msa1117500:CDS | 50.0% | |
| ATCACCACCAACCTCTGGAT+CGG | + | chr7_3:65895796-65895815 | Msa1117500:CDS | 50.0% | |
| CTGGCGATTTCTTGACCTTG+AGG | + | chr7_3:65895822-65895841 | Msa1117500:CDS | 50.0% | |
| TTCTTGACCTTGAGGCTTGG+CGG | + | chr7_3:65895830-65895849 | Msa1117500:CDS | 50.0% | |
| CTCACCATTCTCCAAGGGTT+TGG | - | chr7_3:65895873-65895892 | None:intergenic | 50.0% | |
| ! | GCTCACGCTTATGAGCGTTT+TGG | - | chr7_3:65896012-65896031 | None:intergenic | 50.0% |
| TCAAGCTCTCCACACTACCA+AGG | + | chr7_3:65896127-65896146 | Msa1117500:CDS | 50.0% | |
| CAAGCTCTCCACACTACCAA+GGG | + | chr7_3:65896128-65896147 | Msa1117500:CDS | 50.0% | |
| CACATGGGAACCAATTGGGT+TGG | - | chr7_3:65896182-65896201 | None:intergenic | 50.0% | |
| GATGAACCACCAAGCCAAGA+AGG | - | chr7_3:65896217-65896236 | None:intergenic | 50.0% | |
| !! | TGGCTTGGTGGTTCATCTTC+CGG | + | chr7_3:65896220-65896239 | Msa1117500:CDS | 50.0% |
| ATACATCCCTCCATAGCCAC+CGG | - | chr7_3:65896242-65896261 | None:intergenic | 50.0% | |
| ! | CGTGATGCAGGAGGTGTATT+TGG | - | chr7_3:65896268-65896287 | None:intergenic | 50.0% |
| GGCATCACAAATCGTGATGC+AGG | - | chr7_3:65896280-65896299 | None:intergenic | 50.0% | |
| TGAGGCTAATCCCAATGAGG+AGG | + | chr7_3:65896525-65896544 | Msa1117500:CDS | 50.0% | |
| AATTCCTTCACTTGCGGCGC+AGG | - | chr7_3:65895935-65895954 | None:intergenic | 55.0% | |
| TTCCCCACTTCTCAAGCGCT+TGG | + | chr7_3:65895980-65895999 | Msa1117500:CDS | 55.0% | |
| CTCCAAGCGCTTGAGAAGTG+GGG | - | chr7_3:65895985-65896004 | None:intergenic | 55.0% | |
| CCTCCAAGCGCTTGAGAAGT+GGG | - | chr7_3:65895986-65896005 | None:intergenic | 55.0% | |
| TCCTCCAAGCGCTTGAGAAG+TGG | - | chr7_3:65895987-65896006 | None:intergenic | 55.0% | |
| !! | TCCTTGCCTTCTTGGCTTGG+TGG | + | chr7_3:65896208-65896227 | Msa1117500:CDS | 55.0% |
| ACCACCAAGCCAAGAAGGCA+AGG | - | chr7_3:65896212-65896231 | None:intergenic | 55.0% | |
| ! | CTTGGTGGTTCATCTTCCGG+TGG | + | chr7_3:65896223-65896242 | Msa1117500:CDS | 55.0% |
| GGTTCATCTTCCGGTGGCTA+TGG | + | chr7_3:65896229-65896248 | Msa1117500:CDS | 55.0% | |
| TCATCTTCCGGTGGCTATGG+AGG | + | chr7_3:65896232-65896251 | Msa1117500:CDS | 55.0% | |
| CATCTTCCGGTGGCTATGGA+GGG | + | chr7_3:65896233-65896252 | Msa1117500:CDS | 55.0% | |
| AATTCCTTCACTTGCGGCGC+AGG | - | chr7_3:65895935-65895954 | None:intergenic | 55.0% | |
| TTCCCCACTTCTCAAGCGCT+TGG | + | chr7_3:65895980-65895999 | Msa1117500:CDS | 55.0% | |
| CTCCAAGCGCTTGAGAAGTG+GGG | - | chr7_3:65895985-65896004 | None:intergenic | 55.0% | |
| CCTCCAAGCGCTTGAGAAGT+GGG | - | chr7_3:65895986-65896005 | None:intergenic | 55.0% | |
| TCCTCCAAGCGCTTGAGAAG+TGG | - | chr7_3:65895987-65896006 | None:intergenic | 55.0% | |
| !! | TCCTTGCCTTCTTGGCTTGG+TGG | + | chr7_3:65896208-65896227 | Msa1117500:CDS | 55.0% |
| ACCACCAAGCCAAGAAGGCA+AGG | - | chr7_3:65896212-65896231 | None:intergenic | 55.0% | |
| ! | CTTGGTGGTTCATCTTCCGG+TGG | + | chr7_3:65896223-65896242 | Msa1117500:CDS | 55.0% |
| GGTTCATCTTCCGGTGGCTA+TGG | + | chr7_3:65896229-65896248 | Msa1117500:CDS | 55.0% | |
| TCATCTTCCGGTGGCTATGG+AGG | + | chr7_3:65896232-65896251 | Msa1117500:CDS | 55.0% | |
| CATCTTCCGGTGGCTATGGA+GGG | + | chr7_3:65896233-65896252 | Msa1117500:CDS | 55.0% | |
| GCATCCGATCCAGAGGTTGG+TGG | - | chr7_3:65895803-65895822 | None:intergenic | 60.0% | |
| CCAGCATCCGATCCAGAGGT+TGG | - | chr7_3:65895806-65895825 | None:intergenic | 60.0% | |
| CCAACCTCTGGATCGGATGC+TGG | + | chr7_3:65895803-65895822 | Msa1117500:CDS | 60.0% | |
| ATCGCCAGCATCCGATCCAG+AGG | - | chr7_3:65895810-65895829 | None:intergenic | 60.0% | |
| TTGACCTTGAGGCTTGGCGG+TGG | + | chr7_3:65895833-65895852 | Msa1117500:CDS | 60.0% | |
| CCCACTTCTCAAGCGCTTGG+AGG | + | chr7_3:65895983-65896002 | Msa1117500:CDS | 60.0% | |
| ! | GGTTGGCCAGGCTAGCACTA+CGG | - | chr7_3:65896165-65896184 | None:intergenic | 60.0% |
| ! | GCTAGCCTGGCCAACCCAAT+TGG | + | chr7_3:65896169-65896188 | Msa1117500:CDS | 60.0% |
| !! | GGGAACCAATTGGGTTGGCC+AGG | - | chr7_3:65896177-65896196 | None:intergenic | 60.0% |
| GCATCCGATCCAGAGGTTGG+TGG | - | chr7_3:65895803-65895822 | None:intergenic | 60.0% | |
| CCAGCATCCGATCCAGAGGT+TGG | - | chr7_3:65895806-65895825 | None:intergenic | 60.0% | |
| CCAACCTCTGGATCGGATGC+TGG | + | chr7_3:65895803-65895822 | Msa1117500:CDS | 60.0% | |
| ATCGCCAGCATCCGATCCAG+AGG | - | chr7_3:65895810-65895829 | None:intergenic | 60.0% | |
| TTGACCTTGAGGCTTGGCGG+TGG | + | chr7_3:65895833-65895852 | Msa1117500:CDS | 60.0% | |
| CCCACTTCTCAAGCGCTTGG+AGG | + | chr7_3:65895983-65896002 | Msa1117500:CDS | 60.0% | |
| ! | GGTTGGCCAGGCTAGCACTA+CGG | - | chr7_3:65896165-65896184 | None:intergenic | 60.0% |
| ! | GCTAGCCTGGCCAACCCAAT+TGG | + | chr7_3:65896169-65896188 | Msa1117500:CDS | 60.0% |
| !! | GGGAACCAATTGGGTTGGCC+AGG | - | chr7_3:65896177-65896196 | None:intergenic | 60.0% |
| TGTGCCACCGCCAAGCCTCA+AGG | - | chr7_3:65895840-65895859 | None:intergenic | 65.0% | |
| TTCACTTGCGGCGCAGGTGG+AGG | - | chr7_3:65895929-65895948 | None:intergenic | 65.0% | |
| TCCACCTGCGCCGCAAGTGA+AGG | + | chr7_3:65895928-65895947 | Msa1117500:CDS | 65.0% | |
| TCCTTCACTTGCGGCGCAGG+TGG | - | chr7_3:65895932-65895951 | None:intergenic | 65.0% | |
| TGTGCCACCGCCAAGCCTCA+AGG | - | chr7_3:65895840-65895859 | None:intergenic | 65.0% | |
| TTCACTTGCGGCGCAGGTGG+AGG | - | chr7_3:65895929-65895948 | None:intergenic | 65.0% | |
| TCCACCTGCGCCGCAAGTGA+AGG | + | chr7_3:65895928-65895947 | Msa1117500:CDS | 65.0% | |
| TCCTTCACTTGCGGCGCAGG+TGG | - | chr7_3:65895932-65895951 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 65895716 | 65896573 | 65895716 | ID=Msa1117500;Name=Msa1117500 |
| chr7_3 | mRNA | 65895716 | 65896573 | 65895716 | ID=Msa1117500-mRNA-1;Parent=Msa1117500;Name=Msa1117500-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|285 |
| chr7_3 | exon | 65895716 | 65896573 | 65895716 | ID=Msa1117500-mRNA-1:exon:15810;Parent=Msa1117500-mRNA-1 |
| chr7_3 | CDS | 65895716 | 65896573 | 65895716 | ID=Msa1117500-mRNA-1:cds;Parent=Msa1117500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
