Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119740 | AES80729.1 | 98.990 | 198 | 2 | 0 | 1 | 198 | 1 | 198 | 1.09e-143 | 408 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119740 | sp|O80438|MAK3_ARATH | 86.076 | 158 | 22 | 0 | 16 | 173 | 11 | 168 | 4.67e-102 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119740 | G7KXA5 | 98.990 | 198 | 2 | 0 | 1 | 198 | 1 | 198 | 5.19e-144 | 408 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1119740 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119740 | MtrunA17_Chr7g0252251 | 98.990 | 198 | 2 | 0 | 1 | 198 | 23 | 220 | 3.20e-147 | 407 |
| Msa1119740 | MtrunA17_Chr3g0090311 | 32.117 | 137 | 90 | 3 | 43 | 176 | 23 | 159 | 9.32e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119740 | AT2G38130.2 | 86.076 | 158 | 22 | 0 | 16 | 173 | 11 | 168 | 4.74e-103 | 295 |
| Msa1119740 | AT2G38130.1 | 86.076 | 158 | 22 | 0 | 16 | 173 | 11 | 168 | 4.74e-103 | 295 |
| Msa1119740 | AT5G13780.1 | 31.746 | 126 | 83 | 3 | 43 | 165 | 23 | 148 | 8.14e-11 | 59.3 |
Find 59 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCGTGTGGTTCTGTTCTT+TGG | 0.194057 | 7_3:-68886758 | None:intergenic |
| ATGGTCGCCTTGGCTTTATT+AGG | 0.292348 | 7_3:+68889835 | Msa1119740:CDS |
| TGGTCGCCTTGGCTTTATTA+GGG | 0.308261 | 7_3:+68889836 | Msa1119740:CDS |
| GGGCACGGTGGTTTGTAAAA+TGG | 0.322086 | 7_3:+68887127 | Msa1119740:CDS |
| TCTAGAGGTGCGTGCAAGTC+TGG | 0.341191 | 7_3:-68889927 | None:intergenic |
| GGCACGGTGGTTTGTAAAAT+GGG | 0.366067 | 7_3:+68887128 | Msa1119740:CDS |
| GAAGCAGAAGTCACAAATAA+AGG | 0.367029 | 7_3:+68889798 | Msa1119740:CDS |
| TCGCTTCTCGTTAACGATAG+AGG | 0.369282 | 7_3:+68890154 | Msa1119740:three_prime_UTR |
| TATAAACTGATGCTATGTTA+TGG | 0.407364 | 7_3:+68890073 | Msa1119740:three_prime_UTR |
| ATCGTTACTTCGTCTATCTA+TGG | 0.428944 | 7_3:+68886949 | Msa1119740:CDS |
| ATCAATGTTTATGTCTAGTA+TGG | 0.429673 | 7_3:+68890101 | Msa1119740:three_prime_UTR |
| CTAGACTCACCGGATAAATA+CGG | 0.441585 | 7_3:+68889945 | Msa1119740:CDS |
| TTAAAGTACATAATCATGAA+TGG | 0.452623 | 7_3:-68890020 | None:intergenic |
| CCAATGCCTCTTCCTCTGTA+GGG | 0.454470 | 7_3:-68887203 | None:intergenic |
| CGCTGAGTTCTTCGTCGACA+AGG | 0.454965 | 7_3:-68886905 | None:intergenic |
| CAGCCACAGAACTTGTTACT+AGG | 0.457121 | 7_3:+68887643 | Msa1119740:intron |
| CTTGCTCTGTATGGTCGCCT+TGG | 0.467253 | 7_3:+68889825 | Msa1119740:CDS |
| CTAGGGTTCACAACACTTGT+GGG | 0.470502 | 7_3:-68890217 | None:intergenic |
| AACACTTGTGGGTTTAAAAG+AGG | 0.479744 | 7_3:-68890206 | None:intergenic |
| ATGTGGCTCCCGTATTTATC+CGG | 0.481987 | 7_3:-68889954 | None:intergenic |
| AAAGGAGCACTTGCTCTGTA+TGG | 0.486595 | 7_3:+68889816 | Msa1119740:CDS |
| ATCAAAGTGATGATGGAATC+TGG | 0.488662 | 7_3:+68887669 | Msa1119740:CDS |
| CCCTACAGAGGAAGAGGCAT+TGG | 0.495396 | 7_3:+68887203 | Msa1119740:CDS |
| TAGGTCTATCAAAGTGATGA+TGG | 0.496415 | 7_3:+68887662 | Msa1119740:CDS |
| CGATAGGTGAAGATGGAGTA+AGG | 0.508758 | 7_3:-68886930 | None:intergenic |
| ACCAATGCCTCTTCCTCTGT+AGG | 0.521245 | 7_3:-68887204 | None:intergenic |
| AGCCACATGCATAGTGATCA+TGG | 0.523763 | 7_3:+68889969 | Msa1119740:CDS |
| ATCAAACCCTACAGAGGAAG+AGG | 0.528144 | 7_3:+68887197 | Msa1119740:CDS |
| TCGTCTTCTTCTTCCTCGTG+TGG | 0.531962 | 7_3:-68886771 | None:intergenic |
| ATGTTTATGTCTAGTATGGT+AGG | 0.532021 | 7_3:+68890105 | Msa1119740:three_prime_UTR |
| ACTAGGGTTCACAACACTTG+TGG | 0.533790 | 7_3:-68890218 | None:intergenic |
| GAAGTAACGATAGGTGAAGA+TGG | 0.558085 | 7_3:-68886937 | None:intergenic |
| TATACATTTACAGGTTACAT+TGG | 0.561922 | 7_3:+68889776 | Msa1119740:intron |
| CGCCATGATCACTATGCATG+TGG | 0.578923 | 7_3:-68889971 | None:intergenic |
| TTTCACAAGGGTAAATGTGT+GGG | 0.579585 | 7_3:+68887107 | Msa1119740:CDS |
| GTAGCTGATGTATTCAATCT+CGG | 0.580445 | 7_3:-68886850 | None:intergenic |
| CGAGGAAGAAGAAGACGACA+TGG | 0.580748 | 7_3:+68886776 | Msa1119740:exon |
| CAAGGGTAAATGTGTGGGCA+CGG | 0.585469 | 7_3:+68887112 | Msa1119740:CDS |
| TAGACTCACCGGATAAATAC+GGG | 0.590980 | 7_3:+68889946 | Msa1119740:CDS |
| TCGACAAGGTTCATGATGAG+AGG | 0.599463 | 7_3:-68886891 | None:intergenic |
| CGACAAGGTTCATGATGAGA+GGG | 0.601885 | 7_3:-68886890 | None:intergenic |
| GCACGCACCTCTAGACTCAC+CGG | 0.601943 | 7_3:+68889935 | Msa1119740:CDS |
| CCAAAGAACAGAACCACACG+AGG | 0.613265 | 7_3:+68886758 | Msa1119740:five_prime_UTR |
| GAGATTGAATACATCAGCTA+CGG | 0.624186 | 7_3:+68886852 | Msa1119740:CDS |
| TATTTATCCGGTGAGTCTAG+AGG | 0.626348 | 7_3:-68889942 | None:intergenic |
| GGTGCGTGCAAGTCTGGACG+AGG | 0.630380 | 7_3:-68889921 | None:intergenic |
| GAGGAAATAAAAGTTTAAGA+CGG | 0.630576 | 7_3:-68889902 | None:intergenic |
| GCTTAGCCCTAATAAAGCCA+AGG | 0.631068 | 7_3:-68889842 | None:intergenic |
| TAGATAGACGAAGTAACGAT+AGG | 0.634809 | 7_3:-68886946 | None:intergenic |
| CAAGGTTCATGATGAGAGGG+AGG | 0.645889 | 7_3:-68886887 | None:intergenic |
| CACGGTGGTTTGTAAAATGG+GGG | 0.647644 | 7_3:+68887130 | Msa1119740:CDS |
| GTTGTTATCAAACCCTACAG+AGG | 0.653909 | 7_3:+68887191 | Msa1119740:CDS |
| GCACGGTGGTTTGTAAAATG+GGG | 0.655026 | 7_3:+68887129 | Msa1119740:CDS |
| ATTGAATACATCAGCTACGG+CGG | 0.665233 | 7_3:+68886855 | Msa1119740:CDS |
| AGACCTAGTAACAAGTTCTG+TGG | 0.674745 | 7_3:-68887646 | None:intergenic |
| GGTACCAGAAAAGAAAGATG+AGG | 0.680873 | 7_3:-68886972 | None:intergenic |
| TTGGCTTTATTAGGGCTAAG+CGG | 0.719008 | 7_3:+68889844 | Msa1119740:CDS |
| GGGTAAATGTGTGGGCACGG+TGG | 0.719512 | 7_3:+68887115 | Msa1119740:CDS |
| GATGGAATCTGGTTGTGACG+AGG | 0.743372 | 7_3:+68887680 | Msa1119740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAACTTTTTTATTTTCATT+TGG | + | chr7_3:68887263-68887282 | Msa1119740:intron | 10.0% |
| !!! | AATTATTTTTTTTGCAAAAT+GGG | - | chr7_3:68889062-68889081 | None:intergenic | 10.0% |
| !! | AATATTCAACATTATAAAAT+AGG | - | chr7_3:68889675-68889694 | None:intergenic | 10.0% |
| !!! | TTTATTTTCATTTGGTATAA+TGG | + | chr7_3:68887271-68887290 | Msa1119740:intron | 15.0% |
| !!! | TTATTTTCATTTGGTATAAT+GGG | + | chr7_3:68887272-68887291 | Msa1119740:intron | 15.0% |
| !!! | AACAAATTATTTTCACATTT+AGG | + | chr7_3:68888197-68888216 | Msa1119740:intron | 15.0% |
| !!! | TTTTTTTAATACTTATTAGC+TGG | + | chr7_3:68888237-68888256 | Msa1119740:intron | 15.0% |
| !!! | TTTTTTAATACTTATTAGCT+GGG | + | chr7_3:68888238-68888257 | Msa1119740:intron | 15.0% |
| !!! | CAATTATTTTTTTTGCAAAA+TGG | - | chr7_3:68889063-68889082 | None:intergenic | 15.0% |
| !!! | TTTTGCAAAAAAAATAATTG+CGG | + | chr7_3:68889063-68889082 | Msa1119740:intron | 15.0% |
| !!! | TAAATTGTGTTTAGATTTTT+TGG | + | chr7_3:68889709-68889728 | Msa1119740:intron | 15.0% |
| !!! | TGGTTTTTTTGTAAAACATA+TGG | - | chr7_3:68886741-68886760 | None:intergenic | 20.0% |
| !! | TAATAAATCAAAGCGATTAA+CGG | - | chr7_3:68887048-68887067 | None:intergenic | 20.0% |
| !!! | TTCTTTCTTTGTTTTGTATT+AGG | + | chr7_3:68887082-68887101 | Msa1119740:intron | 20.0% |
| !! | AAAAGAACTTATACTTACAT+AGG | + | chr7_3:68887475-68887494 | Msa1119740:intron | 20.0% |
| !!! | TTAAGTTGTTTATACAAACA+AGG | + | chr7_3:68887535-68887554 | Msa1119740:intron | 20.0% |
| !! | AATCATAAGCACTTATTTAT+AGG | + | chr7_3:68887741-68887760 | Msa1119740:intron | 20.0% |
| !! | ATCATAAGCACTTATTTATA+GGG | + | chr7_3:68887742-68887761 | Msa1119740:intron | 20.0% |
| !! | GTTTGTACAAATAAAAACAA+CGG | + | chr7_3:68888026-68888045 | Msa1119740:intron | 20.0% |
| !! | TCAAACAACACTATAATATT+TGG | + | chr7_3:68888087-68888106 | Msa1119740:intron | 20.0% |
| !!! | TTTTTAATACTTATTAGCTG+GGG | + | chr7_3:68888239-68888258 | Msa1119740:intron | 20.0% |
| !! | AAAGATTATCAAATAGTTAG+AGG | - | chr7_3:68888497-68888516 | None:intergenic | 20.0% |
| !! | AAATATGATAGTCTCAAATT+TGG | - | chr7_3:68888587-68888606 | None:intergenic | 20.0% |
| !! | GAAAATGTTATTAAGATAAG+TGG | - | chr7_3:68888678-68888697 | None:intergenic | 20.0% |
| !!! | AGTGTAATTTTTCATTGAAA+AGG | - | chr7_3:68888789-68888808 | None:intergenic | 20.0% |
| !! | ACAATTAAAGTTCAAATGTT+TGG | + | chr7_3:68889145-68889164 | Msa1119740:intron | 20.0% |
| !! | ACAATTAAAGTTCAAATGTT+TGG | + | chr7_3:68889145-68889164 | Msa1119740:intron | 20.0% |
| !! | CAATTAAAGTTCAAATGTTT+GGG | + | chr7_3:68889146-68889165 | Msa1119740:intron | 20.0% |
| !!! | CATAACAAGTTTAAAATCAA+CGG | - | chr7_3:68889475-68889494 | None:intergenic | 20.0% |
| !! | TTAAAGTACATAATCATGAA+TGG | - | chr7_3:68890023-68890042 | None:intergenic | 20.0% |
| !!! | ACATATGGAAAATTGCTTTT+AGG | - | chr7_3:68886726-68886745 | None:intergenic | 25.0% |
| !!! | ATTTCTGTATCGTTTTTGTT+GGG | - | chr7_3:68886807-68886826 | None:intergenic | 25.0% |
| !! | TTTTCACCTTTTTATCATCT+GGG | + | chr7_3:68887007-68887026 | Msa1119740:intron | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | - | chr7_3:68887375-68887394 | None:intergenic | 25.0% |
| ! | AACTCCTTATAATCACATAT+AGG | - | chr7_3:68887561-68887580 | None:intergenic | 25.0% |
| ! | AAAAAACAAGCAAAAGCTAA+AGG | - | chr7_3:68887619-68887638 | None:intergenic | 25.0% |
| ! | TAGCACTTAAATAAGGTAAA+CGG | - | chr7_3:68887986-68888005 | None:intergenic | 25.0% |
| ! | TTTATTTGTACAAACTGACA+TGG | - | chr7_3:68888021-68888040 | None:intergenic | 25.0% |
| ! | AAGAAAAACATCAAACTTCA+TGG | - | chr7_3:68888141-68888160 | None:intergenic | 25.0% |
| ! | TCACTTAAATAGAAGTAAAC+CGG | - | chr7_3:68888998-68889017 | None:intergenic | 25.0% |
| ! | TTCATCATTGTTCAACTTAT+TGG | + | chr7_3:68889607-68889626 | Msa1119740:intron | 25.0% |
| ! | GTTCAAAGTTAAACACTTAT+AGG | + | chr7_3:68889737-68889756 | Msa1119740:intron | 25.0% |
| !! | CTTCTTGTTTATACATTTAC+AGG | + | chr7_3:68889767-68889786 | Msa1119740:intron | 25.0% |
| ! | TATACATTTACAGGTTACAT+TGG | + | chr7_3:68889776-68889795 | Msa1119740:intron | 25.0% |
| !!! | CTTTTTCACTACTATTTGAA+TGG | + | chr7_3:68889867-68889886 | Msa1119740:CDS | 25.0% |
| ! | GAGGAAATAAAAGTTTAAGA+CGG | - | chr7_3:68889905-68889924 | None:intergenic | 25.0% |
| ! | TATAAACTGATGCTATGTTA+TGG | + | chr7_3:68890073-68890092 | Msa1119740:three_prime_UTR | 25.0% |
| ! | ATCAATGTTTATGTCTAGTA+TGG | + | chr7_3:68890101-68890120 | Msa1119740:three_prime_UTR | 25.0% |
| ! | AGGTTGAAAAAAATCAGAAA+TGG | + | chr7_3:68890174-68890193 | Msa1119740:three_prime_UTR | 25.0% |
| !! | GATTTCTGTATCGTTTTTGT+TGG | - | chr7_3:68886808-68886827 | None:intergenic | 30.0% |
| AGGTGAAAAGATGAAAGATT+TGG | - | chr7_3:68886996-68887015 | None:intergenic | 30.0% | |
| ! | CTTTTCACCTTTTTATCATC+TGG | + | chr7_3:68887006-68887025 | Msa1119740:intron | 30.0% |
| AAATGACCCAGATGATAAAA+AGG | - | chr7_3:68887016-68887035 | None:intergenic | 30.0% | |
| ! | TTTGTATTAGGCTTTTCACA+AGG | + | chr7_3:68887094-68887113 | Msa1119740:intron | 30.0% |
| ! | TTGTATTAGGCTTTTCACAA+GGG | + | chr7_3:68887095-68887114 | Msa1119740:intron | 30.0% |
| !! | TTTGGTATAATGGGTATGTT+TGG | + | chr7_3:68887281-68887300 | Msa1119740:intron | 30.0% |
| AGACTGTCTATTAAAGCTTA+TGG | + | chr7_3:68887331-68887350 | Msa1119740:intron | 30.0% | |
| TGTCTATTAAAGCTTATGGA+AGG | + | chr7_3:68887335-68887354 | Msa1119740:intron | 30.0% | |
| AAGGCCTATATGTGATTATA+AGG | + | chr7_3:68887554-68887573 | Msa1119740:intron | 30.0% | |
| !!! | GTAGAGAAAGCTTTTAGTTT+TGG | + | chr7_3:68887947-68887966 | Msa1119740:intron | 30.0% |
| !!! | AAAGCTTTTAGTTTTGGTGT+TGG | + | chr7_3:68887953-68887972 | Msa1119740:intron | 30.0% |
| !!! | AAGCTTTTAGTTTTGGTGTT+GGG | + | chr7_3:68887954-68887973 | Msa1119740:intron | 30.0% |
| TATTAGATGCGATTCAAGAT+GGG | - | chr7_3:68888416-68888435 | None:intergenic | 30.0% | |
| TTATTAGATGCGATTCAAGA+TGG | - | chr7_3:68888417-68888436 | None:intergenic | 30.0% | |
| AACAAAGATAGATAAGACGA+AGG | - | chr7_3:68888523-68888542 | None:intergenic | 30.0% | |
| ! | GTCTTATCTATCTTTGTTGT+TGG | + | chr7_3:68888525-68888544 | Msa1119740:intron | 30.0% |
| AGAGTCAAAGAGATACTAAT+GGG | - | chr7_3:68888612-68888631 | None:intergenic | 30.0% | |
| ! | TCTATTACAAGTTGACTTTC+CGG | + | chr7_3:68888704-68888723 | Msa1119740:intron | 30.0% |
| GTTGTATGAGATTGTATACA+GGG | - | chr7_3:68888744-68888763 | None:intergenic | 30.0% | |
| TGTTGTATGAGATTGTATAC+AGG | - | chr7_3:68888745-68888764 | None:intergenic | 30.0% | |
| ACATTGCATATAATCTTGAG+TGG | + | chr7_3:68888762-68888781 | Msa1119740:intron | 30.0% | |
| !! | TTACACTTAAAGCATTGTTC+CGG | + | chr7_3:68888802-68888821 | Msa1119740:intron | 30.0% |
| CCTATCAAACAAAATAACAG+GGG | - | chr7_3:68888871-68888890 | None:intergenic | 30.0% | |
| GCCTATCAAACAAAATAACA+GGG | - | chr7_3:68888872-68888891 | None:intergenic | 30.0% | |
| TACTACATCTCTTAGTAAAC+TGG | + | chr7_3:68888958-68888977 | Msa1119740:intron | 30.0% | |
| AAAATAATTGCGGAACCAAT+TGG | + | chr7_3:68889073-68889092 | Msa1119740:intron | 30.0% | |
| AGTCATCGTATGAAAACATA+GGG | - | chr7_3:68889236-68889255 | None:intergenic | 30.0% | |
| CAAAAATGCTTGTGTAAACT+CGG | + | chr7_3:68889272-68889291 | Msa1119740:intron | 30.0% | |
| AAAAATGCTTGTGTAAACTC+GGG | + | chr7_3:68889273-68889292 | Msa1119740:intron | 30.0% | |
| CAAAACTACTACAGATTGAA+GGG | - | chr7_3:68889429-68889448 | None:intergenic | 30.0% | |
| TCAAAACTACTACAGATTGA+AGG | - | chr7_3:68889430-68889449 | None:intergenic | 30.0% | |
| AGATTCACAAATCACATGAT+CGG | - | chr7_3:68889524-68889543 | None:intergenic | 30.0% | |
| GCGAAATACTTCAATTATGT+CGG | + | chr7_3:68889635-68889654 | Msa1119740:intron | 30.0% | |
| AAATACTTCAATTATGTCGG+TGG | + | chr7_3:68889638-68889657 | Msa1119740:intron | 30.0% | |
| ATGTTTATGTCTAGTATGGT+AGG | + | chr7_3:68890105-68890124 | Msa1119740:three_prime_UTR | 30.0% | |
| GTAGCTGATGTATTCAATCT+CGG | - | chr7_3:68886853-68886872 | None:intergenic | 35.0% | |
| GAGATTGAATACATCAGCTA+CGG | + | chr7_3:68886852-68886871 | Msa1119740:CDS | 35.0% | |
| TAGATAGACGAAGTAACGAT+AGG | - | chr7_3:68886949-68886968 | None:intergenic | 35.0% | |
| ATCGTTACTTCGTCTATCTA+TGG | + | chr7_3:68886949-68886968 | Msa1119740:CDS | 35.0% | |
| ! | TTTTCACAAGGGTAAATGTG+TGG | + | chr7_3:68887106-68887125 | Msa1119740:CDS | 35.0% |
| TTTCACAAGGGTAAATGTGT+GGG | + | chr7_3:68887107-68887126 | Msa1119740:CDS | 35.0% | |
| TAGGTCTATCAAAGTGATGA+TGG | + | chr7_3:68887662-68887681 | Msa1119740:CDS | 35.0% | |
| !! | ATCAAAGTGATGATGGAATC+TGG | + | chr7_3:68887669-68887688 | Msa1119740:CDS | 35.0% |
| GATACAACTAGACATAGACA+TGG | - | chr7_3:68887904-68887923 | None:intergenic | 35.0% | |
| TGGAAGCTAGCACTTAAATA+AGG | - | chr7_3:68887993-68888012 | None:intergenic | 35.0% | |
| TACAAACTGACATGGAACTA+TGG | - | chr7_3:68888013-68888032 | None:intergenic | 35.0% | |
| !!! | ATTGAGAGTATTTTTCCACC+AGG | + | chr7_3:68888344-68888363 | Msa1119740:intron | 35.0% |
| AAATAGTTAGAGGTAGAGAG+AGG | - | chr7_3:68888487-68888506 | None:intergenic | 35.0% | |
| !! | TTTGTTGTTGGTGTTTCTGT+GGG | + | chr7_3:68888537-68888556 | Msa1119740:intron | 35.0% |
| GAGAGTCAAAGAGATACTAA+TGG | - | chr7_3:68888613-68888632 | None:intergenic | 35.0% | |
| !!! | CCCCTGTTATTTTGTTTGAT+AGG | + | chr7_3:68888868-68888887 | Msa1119740:intron | 35.0% |
| CGCCTATCAAACAAAATAAC+AGG | - | chr7_3:68888873-68888892 | None:intergenic | 35.0% | |
| !! | TATTTTGTTTGATAGGCGCA+AGG | + | chr7_3:68888875-68888894 | Msa1119740:intron | 35.0% |
| !!! | ACTGGCTTTTCATATAGTAC+CGG | + | chr7_3:68888976-68888995 | Msa1119740:intron | 35.0% |
| GATTATTGAGCAGATCCAAT+TGG | - | chr7_3:68889091-68889110 | None:intergenic | 35.0% | |
| ! | AAACCAGAGTGAAACTCTTT+TGG | - | chr7_3:68889118-68889137 | None:intergenic | 35.0% |
| CAGTCATCGTATGAAAACAT+AGG | - | chr7_3:68889237-68889256 | None:intergenic | 35.0% | |
| ATCTTTGCAATGAACTCAAC+AGG | + | chr7_3:68889312-68889331 | Msa1119740:intron | 35.0% | |
| TGCATCAACTTATCAGAGTT+GGG | - | chr7_3:68889355-68889374 | None:intergenic | 35.0% | |
| ATGCATCAACTTATCAGAGT+TGG | - | chr7_3:68889356-68889375 | None:intergenic | 35.0% | |
| TGAAGCTAGATTAAGCTTTG+TGG | - | chr7_3:68889383-68889402 | None:intergenic | 35.0% | |
| TACCATCACAACTCAAATGA+TGG | - | chr7_3:68889549-68889568 | None:intergenic | 35.0% | |
| ! | TTGAGTTGTGATGGTATGTT+TGG | + | chr7_3:68889553-68889572 | Msa1119740:intron | 35.0% |
| TGAGTTGTGATGGTATGTTT+GGG | + | chr7_3:68889554-68889573 | Msa1119740:intron | 35.0% | |
| GAAGCAGAAGTCACAAATAA+AGG | + | chr7_3:68889798-68889817 | Msa1119740:CDS | 35.0% | |
| AACACTTGTGGGTTTAAAAG+AGG | - | chr7_3:68890209-68890228 | None:intergenic | 35.0% | |
| ATTGAATACATCAGCTACGG+CGG | + | chr7_3:68886855-68886874 | Msa1119740:CDS | 40.0% | |
| GAAGTAACGATAGGTGAAGA+TGG | - | chr7_3:68886940-68886959 | None:intergenic | 40.0% | |
| ! | ATGGCCTCATCTTTCTTTTC+TGG | + | chr7_3:68886968-68886987 | Msa1119740:CDS | 40.0% |
| GGTACCAGAAAAGAAAGATG+AGG | - | chr7_3:68886975-68886994 | None:intergenic | 40.0% | |
| ! | GAACATCGTAGCACTTTTAG+AGG | + | chr7_3:68887152-68887171 | Msa1119740:CDS | 40.0% |
| GTTGTTATCAAACCCTACAG+AGG | + | chr7_3:68887191-68887210 | Msa1119740:CDS | 40.0% | |
| AGACCTAGTAACAAGTTCTG+TGG | - | chr7_3:68887649-68887668 | None:intergenic | 40.0% | |
| AGTTGTATCCCAATGTCATG+TGG | + | chr7_3:68887915-68887934 | Msa1119740:intron | 40.0% | |
| TACCTAGACCACATGACATT+GGG | - | chr7_3:68887926-68887945 | None:intergenic | 40.0% | |
| ATACCTAGACCACATGACAT+TGG | - | chr7_3:68887927-68887946 | None:intergenic | 40.0% | |
| !!! | CTTTTAGTTTTGGTGTTGGG+TGG | + | chr7_3:68887957-68887976 | Msa1119740:intron | 40.0% |
| !! | AGAGTATTTTTCCACCAGGT+GGG | + | chr7_3:68888051-68888070 | Msa1119740:intron | 40.0% |
| CTAGGGCAAACATACACTTT+AGG | - | chr7_3:68888265-68888284 | None:intergenic | 40.0% | |
| CTAAAGTGTATGTTTGCCCT+AGG | + | chr7_3:68888263-68888282 | Msa1119740:intron | 40.0% | |
| !! | TATGAGATTTTGGTGGCCTA+GGG | - | chr7_3:68888282-68888301 | None:intergenic | 40.0% |
| !! | TTATGAGATTTTGGTGGCCT+AGG | - | chr7_3:68888283-68888302 | None:intergenic | 40.0% |
| GGCCACCAAAATCTCATAAA+CGG | + | chr7_3:68888284-68888303 | Msa1119740:intron | 40.0% | |
| GCCACCAAAATCTCATAAAC+GGG | + | chr7_3:68888285-68888304 | Msa1119740:intron | 40.0% | |
| GTACAAACTGACATTGAAGC+AGG | - | chr7_3:68888311-68888330 | None:intergenic | 40.0% | |
| !! | AGAGTATTTTTCCACCAGGT+GGG | + | chr7_3:68888051-68888070 | Msa1119740:intron | 40.0% |
| GGAACACTGCATGTTTGAAA+AGG | - | chr7_3:68888460-68888479 | None:intergenic | 40.0% | |
| !! | CTTTGTTGTTGGTGTTTCTG+TGG | + | chr7_3:68888536-68888555 | Msa1119740:intron | 40.0% |
| AGACAAGATAGGATCAAGGA+CGG | - | chr7_3:68888648-68888667 | None:intergenic | 40.0% | |
| CACAAGACAAGATAGGATCA+AGG | - | chr7_3:68888652-68888671 | None:intergenic | 40.0% | |
| GATTCATGCAGGTGATAAAC+CGG | - | chr7_3:68888824-68888843 | None:intergenic | 40.0% | |
| TTATCACCTGCATGAATCCT+AGG | + | chr7_3:68888826-68888845 | Msa1119740:intron | 40.0% | |
| TATCACCTGCATGAATCCTA+GGG | + | chr7_3:68888827-68888846 | Msa1119740:intron | 40.0% | |
| TAAAGAGTGATGCAAACCCT+AGG | - | chr7_3:68888846-68888865 | None:intergenic | 40.0% | |
| CTTCCAAAGTTTGTCTCTGT+TGG | + | chr7_3:68889028-68889047 | Msa1119740:intron | 40.0% | |
| AGACCAACAGAGACAAACTT+TGG | - | chr7_3:68889034-68889053 | None:intergenic | 40.0% | |
| CTTCCAAAAGAGTTTCACTC+TGG | + | chr7_3:68889112-68889131 | Msa1119740:intron | 40.0% | |
| ATGAACTCAACAGGTCAATG+AGG | + | chr7_3:68889321-68889340 | Msa1119740:intron | 40.0% | |
| ! | AGCTTAATCTAGCTTCAACG+AGG | + | chr7_3:68889386-68889405 | Msa1119740:intron | 40.0% |
| ! | GCTTAATCTAGCTTCAACGA+GGG | + | chr7_3:68889387-68889406 | Msa1119740:intron | 40.0% |
| ! | CTTAATCTAGCTTCAACGAG+GGG | + | chr7_3:68889388-68889407 | Msa1119740:intron | 40.0% |
| ACTACAGATTGAAGGGTAGT+GGG | - | chr7_3:68889422-68889441 | None:intergenic | 40.0% | |
| TACTACAGATTGAAGGGTAG+TGG | - | chr7_3:68889423-68889442 | None:intergenic | 40.0% | |
| !! | GACCATCATTTGAGTTGTGA+TGG | + | chr7_3:68889544-68889563 | Msa1119740:intron | 40.0% |
| GGTATGTTTGGGTACTAGTT+TGG | + | chr7_3:68889565-68889584 | Msa1119740:intron | 40.0% | |
| ! | GGTACTAGTTTGGTTTAGTC+TGG | + | chr7_3:68889575-68889594 | Msa1119740:intron | 40.0% |
| !! | TTGGCTTTATTAGGGCTAAG+CGG | + | chr7_3:68889844-68889863 | Msa1119740:CDS | 40.0% |
| TATTTATCCGGTGAGTCTAG+AGG | - | chr7_3:68889945-68889964 | None:intergenic | 40.0% | |
| CTAGACTCACCGGATAAATA+CGG | + | chr7_3:68889945-68889964 | Msa1119740:CDS | 40.0% | |
| TAGACTCACCGGATAAATAC+GGG | + | chr7_3:68889946-68889965 | Msa1119740:CDS | 40.0% | |
| CGACAAGGTTCATGATGAGA+GGG | - | chr7_3:68886893-68886912 | None:intergenic | 45.0% | |
| TCGACAAGGTTCATGATGAG+AGG | - | chr7_3:68886894-68886913 | None:intergenic | 45.0% | |
| CGATAGGTGAAGATGGAGTA+AGG | - | chr7_3:68886933-68886952 | None:intergenic | 45.0% | |
| ! | GGCACGGTGGTTTGTAAAAT+GGG | + | chr7_3:68887128-68887147 | Msa1119740:CDS | 45.0% |
| ! | GCACGGTGGTTTGTAAAATG+GGG | + | chr7_3:68887129-68887148 | Msa1119740:CDS | 45.0% |
| ! | CACGGTGGTTTGTAAAATGG+GGG | + | chr7_3:68887130-68887149 | Msa1119740:CDS | 45.0% |
| ATCAAACCCTACAGAGGAAG+AGG | + | chr7_3:68887197-68887216 | Msa1119740:CDS | 45.0% | |
| !! | CAGCCACAGAACTTGTTACT+AGG | + | chr7_3:68887643-68887662 | Msa1119740:intron | 45.0% |
| ATCCCAATGTCATGTGGTCT+AGG | + | chr7_3:68887921-68887940 | Msa1119740:intron | 45.0% | |
| !!! | GGTGAGAGTATTTTTCCACC+AGG | + | chr7_3:68888047-68888066 | Msa1119740:intron | 45.0% |
| !!! | GAGAGTATTTTTCCACCAGG+TGG | + | chr7_3:68888050-68888069 | Msa1119740:intron | 45.0% |
| ! | GAGTATTTTTCCACCAGGTG+GGG | + | chr7_3:68888052-68888071 | Msa1119740:intron | 45.0% |
| ATCTCATAACTAACCCCACC+TGG | - | chr7_3:68888068-68888087 | None:intergenic | 45.0% | |
| ! | GCCCGTTTATGAGATTTTGG+TGG | - | chr7_3:68888289-68888308 | None:intergenic | 45.0% |
| ! | CAGGCCCGTTTATGAGATTT+TGG | - | chr7_3:68888292-68888311 | None:intergenic | 45.0% |
| !!! | GAGAGTATTTTTCCACCAGG+TGG | + | chr7_3:68888050-68888069 | Msa1119740:intron | 45.0% |
| ! | GAGTATTTTTCCACCAGGTG+GGG | + | chr7_3:68888052-68888071 | Msa1119740:intron | 45.0% |
| ATCTCATAACTAACCCCACC+TGG | - | chr7_3:68888068-68888087 | None:intergenic | 45.0% | |
| TTAGAGGTAGAGAGAGGTCA+AGG | - | chr7_3:68888481-68888500 | None:intergenic | 45.0% | |
| GTGGTCACACAAGACAAGAT+AGG | - | chr7_3:68888659-68888678 | None:intergenic | 45.0% | |
| ! | TACAAGTTGACTTTCCGGTC+AGG | + | chr7_3:68888709-68888728 | Msa1119740:intron | 45.0% |
| TAAACTCGGGTAGAGTCACA+CGG | + | chr7_3:68889286-68889305 | Msa1119740:intron | 45.0% | |
| !! | GATTGAAGGGTAGTGGGATT+GGG | - | chr7_3:68889416-68889435 | None:intergenic | 45.0% |
| !! | AGATTGAAGGGTAGTGGGAT+TGG | - | chr7_3:68889417-68889436 | None:intergenic | 45.0% |
| !! | AAAGGAGCACTTGCTCTGTA+TGG | + | chr7_3:68889816-68889835 | Msa1119740:CDS | 45.0% |
| !! | ATGGTCGCCTTGGCTTTATT+AGG | + | chr7_3:68889835-68889854 | Msa1119740:CDS | 45.0% |
| !! | TGGTCGCCTTGGCTTTATTA+GGG | + | chr7_3:68889836-68889855 | Msa1119740:CDS | 45.0% |
| GCTTAGCCCTAATAAAGCCA+AGG | - | chr7_3:68889845-68889864 | None:intergenic | 45.0% | |
| ATGTGGCTCCCGTATTTATC+CGG | - | chr7_3:68889957-68889976 | None:intergenic | 45.0% | |
| AGCCACATGCATAGTGATCA+TGG | + | chr7_3:68889969-68889988 | Msa1119740:CDS | 45.0% | |
| TCGCTTCTCGTTAACGATAG+AGG | + | chr7_3:68890154-68890173 | Msa1119740:three_prime_UTR | 45.0% | |
| CTAGGGTTCACAACACTTGT+GGG | - | chr7_3:68890220-68890239 | None:intergenic | 45.0% | |
| ACTAGGGTTCACAACACTTG+TGG | - | chr7_3:68890221-68890240 | None:intergenic | 45.0% | |
| ! | CCTCGTGTGGTTCTGTTCTT+TGG | - | chr7_3:68886761-68886780 | None:intergenic | 50.0% |
| CCAAAGAACAGAACCACACG+AGG | + | chr7_3:68886758-68886777 | Msa1119740:five_prime_UTR | 50.0% | |
| TCGTCTTCTTCTTCCTCGTG+TGG | - | chr7_3:68886774-68886793 | None:intergenic | 50.0% | |
| CGAGGAAGAAGAAGACGACA+TGG | + | chr7_3:68886776-68886795 | Msa1119740:exon | 50.0% | |
| CAAGGTTCATGATGAGAGGG+AGG | - | chr7_3:68886890-68886909 | None:intergenic | 50.0% | |
| CAAGGGTAAATGTGTGGGCA+CGG | + | chr7_3:68887112-68887131 | Msa1119740:CDS | 50.0% | |
| ! | GGGCACGGTGGTTTGTAAAA+TGG | + | chr7_3:68887127-68887146 | Msa1119740:CDS | 50.0% |
| CCAATGCCTCTTCCTCTGTA+GGG | - | chr7_3:68887206-68887225 | None:intergenic | 50.0% | |
| ACCAATGCCTCTTCCTCTGT+AGG | - | chr7_3:68887207-68887226 | None:intergenic | 50.0% | |
| GATGGAATCTGGTTGTGACG+AGG | + | chr7_3:68887680-68887699 | Msa1119740:CDS | 50.0% | |
| TCATAACTAACCCCACCTGG+TGG | - | chr7_3:68888065-68888084 | None:intergenic | 50.0% | |
| TCATAACTAACCCCACCTGG+TGG | - | chr7_3:68888065-68888084 | None:intergenic | 50.0% | |
| GCAAACCCTAGGATTCATGC+AGG | - | chr7_3:68888835-68888854 | None:intergenic | 50.0% | |
| CGCCATGATCACTATGCATG+TGG | - | chr7_3:68889974-68889993 | None:intergenic | 50.0% | |
| CGCTGAGTTCTTCGTCGACA+AGG | - | chr7_3:68886908-68886927 | None:intergenic | 55.0% | |
| ! | CCCTACAGAGGAAGAGGCAT+TGG | + | chr7_3:68887203-68887222 | Msa1119740:CDS | 55.0% |
| CAGGGCAGAAAAAGCCTGAC+CGG | - | chr7_3:68888726-68888745 | None:intergenic | 55.0% | |
| CTTGCTCTGTATGGTCGCCT+TGG | + | chr7_3:68889825-68889844 | Msa1119740:CDS | 55.0% | |
| ! | TCTAGAGGTGCGTGCAAGTC+TGG | - | chr7_3:68889930-68889949 | None:intergenic | 55.0% |
| GGGTAAATGTGTGGGCACGG+TGG | + | chr7_3:68887115-68887134 | Msa1119740:CDS | 60.0% | |
| GCACGCACCTCTAGACTCAC+CGG | + | chr7_3:68889935-68889954 | Msa1119740:CDS | 60.0% | |
| GGTGCGTGCAAGTCTGGACG+AGG | - | chr7_3:68889924-68889943 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 68886713 | 68890243 | 68886713 | ID=Msa1119740;Name=Msa1119740 |
| chr7_3 | mRNA | 68886713 | 68890243 | 68886713 | ID=Msa1119740-mRNA-1;Parent=Msa1119740;Name=Msa1119740-mRNA-1;_AED=0.08;_eAED=0.08;_QI=82|1|1|1|1|1|4|230|198 |
| chr7_3 | exon | 68886713 | 68886989 | 68886713 | ID=Msa1119740-mRNA-1:exon:17301;Parent=Msa1119740-mRNA-1 |
| chr7_3 | exon | 68887104 | 68887224 | 68887104 | ID=Msa1119740-mRNA-1:exon:17302;Parent=Msa1119740-mRNA-1 |
| chr7_3 | exon | 68887646 | 68887701 | 68887646 | ID=Msa1119740-mRNA-1:exon:17303;Parent=Msa1119740-mRNA-1 |
| chr7_3 | exon | 68889789 | 68890243 | 68889789 | ID=Msa1119740-mRNA-1:exon:17304;Parent=Msa1119740-mRNA-1 |
| chr7_3 | five_prime_UTR | 68886713 | 68886794 | 68886713 | ID=Msa1119740-mRNA-1:five_prime_utr;Parent=Msa1119740-mRNA-1 |
| chr7_3 | CDS | 68886795 | 68886989 | 68886795 | ID=Msa1119740-mRNA-1:cds;Parent=Msa1119740-mRNA-1 |
| chr7_3 | CDS | 68887104 | 68887224 | 68887104 | ID=Msa1119740-mRNA-1:cds;Parent=Msa1119740-mRNA-1 |
| chr7_3 | CDS | 68887646 | 68887701 | 68887646 | ID=Msa1119740-mRNA-1:cds;Parent=Msa1119740-mRNA-1 |
| chr7_3 | CDS | 68889789 | 68890013 | 68889789 | ID=Msa1119740-mRNA-1:cds;Parent=Msa1119740-mRNA-1 |
| chr7_3 | three_prime_UTR | 68890014 | 68890243 | 68890014 | ID=Msa1119740-mRNA-1:three_prime_utr;Parent=Msa1119740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
