AlfalfaGEDB | Msa1119770

M. sativa cultivar zhongmu-4 / Msa1119770

KEGG: K11420
GO: GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564
PFAM: PF02182.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119770	XP_003624506.2	90.897	758	12	6	1	702	1	757	0.0	1380

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119770	sp\|Q8GZB6\|SUVH4_ARATH	54.532	662	242	10	52	702	11	624	0.0	707

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119770	G7KXA0	90.897	758	12	6	1	702	1	757	0.0	1380

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1119770	TR	SET

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119770	MtrunA17_Chr7g0252211	90.897	758	12	6	1	702	1	757	0.0	1380
Msa1119770	MtrunA17_Chr6g0476111	85.036	695	58	7	53	702	1	694	0.0	1053
Msa1119770	MtrunA17_Chr6g0476121	85.366	615	46	7	131	702	30	643	0.0	1018
Msa1119770	MtrunA17_Chr5g0399801	43.750	480	235	11	233	702	635	1089	2.32e-120	385
Msa1119770	MtrunA17_Chr4g0003501	42.105	475	241	10	236	702	507	955	2.70e-118	377
Msa1119770	MtrunA17_Chr4g0003511	41.300	477	244	11	236	702	602	1052	7.04e-113	365
Msa1119770	MtrunA17_Chr7g0255181	38.277	499	262	13	214	698	235	701	1.55e-95	310
Msa1119770	MtrunA17_Chr8g0369301	34.343	594	324	17	111	672	177	736	1.34e-93	306
Msa1119770	MtrunA17_Chr8g0368901	37.996	479	253	14	219	674	301	758	2.09e-93	306
Msa1119770	MtrunA17_Chr8g0368911	32.357	649	352	21	50	672	162	749	7.33e-92	303

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119770	AT5G13960.1	54.532	662	242	10	52	702	11	624	0.0	707
Msa1119770	AT5G13960.2	65.988	491	155	2	223	702	1	490	0.0	701
Msa1119770	AT2G35160.5	39.792	480	227	11	236	702	328	758	2.99e-109	348
Msa1119770	AT2G35160.2	39.792	480	227	11	236	702	364	794	1.03e-108	348
Msa1119770	AT2G35160.3	39.792	480	227	11	236	702	364	794	1.03e-108	348
Msa1119770	AT2G35160.1	39.792	480	227	11	236	702	364	794	1.03e-108	348
Msa1119770	AT2G35160.4	39.792	480	227	11	236	702	364	794	1.03e-108	348
Msa1119770	AT2G22740.2	40.612	490	240	15	236	702	329	790	2.52e-105	339
Msa1119770	AT2G22740.1	40.612	490	240	15	236	702	329	790	2.52e-105	339
Msa1119770	AT1G73100.1	36.310	504	281	11	213	698	184	665	2.36e-92	301

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

Find 195 sgRNAs with CRISPR-Local

Find 732 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATTGGCAGCATTCC+AGG	0.338846	7_3:+68907383	Msa1119770:CDS
AAAATGTGTTACCTGTAAAG+GGG	0.612555	7_3:-68913344	None:intergenic
AAACAAATGGCGTGCTATTG+TGG	0.474553	7_3:+68914790	Msa1119770:CDS
AAAGACGTTGTGTTTGAATG+TGG	0.675624	7_3:+68912654	Msa1119770:CDS
AAATCAACCCAGGTATATCA+AGG	0.513823	7_3:-68914950	None:intergenic
AAATGTGTTACCTGTAAAGG+GGG	0.632493	7_3:-68913343	None:intergenic
AAATTGAGAAGAGAGGTGGC+GGG	0.671120	7_3:+68906437	Msa1119770:CDS
AACAACACATTCATTCGCAA+CGG	0.638739	7_3:-68905453	None:intergenic
AACCAAATTTGTAGCTGGAA+TGG	0.461157	7_3:-68911241	None:intergenic
AACGAGAGGCTAAAATTATA+TGG	0.268121	7_3:-68915193	None:intergenic

Showing 1 to 10 of 195 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTGAAACCTTCAAAAGCTT+CGG	-	chr7_3:68905479-68905498	None:intergenic	30.0%
GTGAAGATTAAGGTGAAATA+CGG	+	chr7_3:68905509-68905528	Msa1119770:intron	30.0%
GAACATAAGAAAACAGCTTA+TGG	+	chr7_3:68906109-68906128	Msa1119770:intron	30.0%
AATTCACAGCTTATACACAA+TGG	-	chr7_3:68906296-68906315	None:intergenic	30.0%
AAATCTCCTAAAAAATCTCC+TGG	+	chr7_3:68906481-68906500	Msa1119770:CDS	30.0%
AATCTCCTAAAAAATCTCCT+GGG	+	chr7_3:68906482-68906501	Msa1119770:CDS	30.0%
GAATAACTTATAAGCTGTCT+TGG	-	chr7_3:68906698-68906717	None:intergenic	30.0%
CTAACAGATGATGCAAAATA+AGG	+	chr7_3:68907343-68907362	Msa1119770:intron	30.0%
AAAACGGTAATTCAACTTCT+TGG	+	chr7_3:68907691-68907710	Msa1119770:intron	30.0%
GCAACAAAAAAAGAGAAAAG+GGG	-	chr7_3:68907859-68907878	None:intergenic	30.0%

Showing 1 to 10 of 732 entries

Previous1 2 3 4 5…74Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	68905415	68915227	68905415	ID=Msa1119770;Name=Msa1119770
chr7_3	mRNA	68905415	68915227	68905415	ID=Msa1119770-mRNA-1;Parent=Msa1119770;Name=Msa1119770-mRNA-1;_AED=0.11;_eAED=0.12;_QI=7\|0.66\|0.68\|1\|0.6\|0.68\|16\|384\|702
chr7_3	exon	68905415	68905508	68905415	ID=Msa1119770-mRNA-1:exon:17305;Parent=Msa1119770-mRNA-1
chr7_3	exon	68905521	68905766	68905521	ID=Msa1119770-mRNA-1:exon:17306;Parent=Msa1119770-mRNA-1
chr7_3	exon	68905773	68905961	68905773	ID=Msa1119770-mRNA-1:exon:17307;Parent=Msa1119770-mRNA-1
chr7_3	exon	68906403	68906546	68906403	ID=Msa1119770-mRNA-1:exon:17308;Parent=Msa1119770-mRNA-1
chr7_3	exon	68907350	68907404	68907350	ID=Msa1119770-mRNA-1:exon:17309;Parent=Msa1119770-mRNA-1
chr7_3	exon	68907587	68907696	68907587	ID=Msa1119770-mRNA-1:exon:17310;Parent=Msa1119770-mRNA-1
chr7_3	exon	68907881	68908054	68907881	ID=Msa1119770-mRNA-1:exon:17311;Parent=Msa1119770-mRNA-1
chr7_3	exon	68909919	68910017	68909919	ID=Msa1119770-mRNA-1:exon:17312;Parent=Msa1119770-mRNA-1
chr7_3	exon	68910447	68910545	68910447	ID=Msa1119770-mRNA-1:exon:17313;Parent=Msa1119770-mRNA-1
chr7_3	exon	68911070	68911119	68911070	ID=Msa1119770-mRNA-1:exon:17314;Parent=Msa1119770-mRNA-1
chr7_3	exon	68911200	68911275	68911200	ID=Msa1119770-mRNA-1:exon:17315;Parent=Msa1119770-mRNA-1
chr7_3	exon	68912426	68912568	68912426	ID=Msa1119770-mRNA-1:exon:17316;Parent=Msa1119770-mRNA-1
chr7_3	exon	68912641	68912746	68912641	ID=Msa1119770-mRNA-1:exon:17317;Parent=Msa1119770-mRNA-1
chr7_3	exon	68912833	68913015	68912833	ID=Msa1119770-mRNA-1:exon:17318;Parent=Msa1119770-mRNA-1
chr7_3	exon	68913121	68913354	68913121	ID=Msa1119770-mRNA-1:exon:17319;Parent=Msa1119770-mRNA-1
chr7_3	exon	68914730	68915227	68914730	ID=Msa1119770-mRNA-1:exon:17320;Parent=Msa1119770-mRNA-1
chr7_3	five_prime_UTR	68905415	68905421	68905415	ID=Msa1119770-mRNA-1:five_prime_utr;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68905422	68905508	68905422	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68905521	68905766	68905521	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68905773	68905961	68905773	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68906403	68906546	68906403	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68907350	68907404	68907350	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68907587	68907696	68907587	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68907881	68908054	68907881	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68909919	68910017	68909919	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68910447	68910545	68910447	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68911070	68911119	68911070	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68911200	68911275	68911200	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68912426	68912568	68912426	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68912641	68912746	68912641	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68912833	68913015	68912833	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68913121	68913354	68913121	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	CDS	68914730	68914843	68914730	ID=Msa1119770-mRNA-1:cds;Parent=Msa1119770-mRNA-1
chr7_3	three_prime_UTR	68914844	68915227	68914844	ID=Msa1119770-mRNA-1:three_prime_utr;Parent=Msa1119770-mRNA-1

Gene Sequence

>Msa1119770

ATGGTTGCGCAATCGTTGGAGATTCGTGATTCCGTTGCGAATGAATGTGTTGTTCCGAAGCTTTTGAAGGTTTCAATGAATCCTAAGGTGAAATACGGTGGAAAGAAGCTGAAAGATGAATCGAAGGATGCGACGGTGACGACGGAGGTGACACCAATGTCGTCGCAGAGGAGATCGAGTTCGAGGATTCAAGCTAAGCAGAAAGAGGTTGAAGAGATTCAGCTTCGCCGGAAAGCTGAGGGGGTAGAAGCTGAAGAGAAATCCGACGAGGTTGAGGTTTCGCCGGTGAAGTCCAGGAAACGTGTGAGGAGAAGTCCTAGTAGGGAGAGTGTGGAGGTTGTTGAGGAGAAAGAGACAACAGAGAAGAAGAAGGAAGATGTTGTTGTTGAGGGGAAACCGACGAAGAAGAAGAAATCGGCGTCGGATGAGAAACGTGAGCTGATGGAGGTTTGGAATGAGAAAATGGCTGCTGAAACTGAAAATGCTGGTGGTGCATTGAGTGATAAGAGCTCAACGGCGAAGGAGGAGGAGGCGAGGGTTGCTAAAGATAATGCTGAAATTGAGAAGAGAGGTGGCGGGAAGAAATCTGCTGCTAAAAAGAAATCTCCTAAAAAATCTCCTGAGAAGAAATCTCCTAAAAAATCTCCTGGGAAGAAGTCTCTTAAGATGATGCAAAATAAGGAGATACTATACCCTGACAAAAGAATTGGCAGCATTCCAGGCATTGAGGTTGGATATCAGTTCTATTCTCGTGCTGAAATGGTTGCAGTTGGTTTTCATAGCCACTGGTTAAATGGCATTGATTTTATCGGCCAATCTTATTCCAAAACGTACCCCAAGCTCAAACTCCCAGTTGCTGTGGCAATTGTCATTTCAGGCATGTATGAAGATGATCTGGATAATGCTGAGGATGTTGTGTACACTGGTCAAGGTGGGCATAATCTGACCGGTAATAAGCGTCAAATTCAAGATCAAAAGTTGGAGCGGGGTAATTTAGCACTCAAGAACTGCTGGGATCAAAAGGTGCCAGTAAGGGTGATTCGAGGTCATGACTCACGTAGCAGTTACACTCGTAAAGTCTATACATATGATGGCTTGTACAAGGTTGACAGCTATTGGGCAGAGAAGGGAATATCTGGCTTCACAGTATACAAGTTTCGTCTCAGGAGGGTTGAAGGACAGCCTACATTAACAACAAATCAGGTTTATTTCACAATGGGACGTGTACCTCAGTCTACAGCAGAAATACGAGGGTTGATATGTGATGATATCACTAACGGTCAGGAAGCTGTGCCCATTCCAGCTACAAATTTGGTTGATGACCCACCTTCTCTGAAGGTTGCAAAAGGCGTTAAGCTTCCTGCGAGCGCCTCTGGATGCAAATGCAAAGACAAATGTACTGATCCAAACACGTGTGAATGTGCAAAGCGCAATGGCTCTGAATTTCCCTATGTATCTAAAGATGGTGGCAGATTAATTGAAGCTAAAGACGTTGTGTTTGAATGTGGTCCCAATTGTGGCTGTGGTCCTGAGTGTGTGAATAGGACTTCTCAAAGAGGACTTCAATATCGTCTGGAGGTTTTCCGTACTGCAAAGAAAGGATGGGCTGTTAGATCCTGGGATTTTATACCTTCTGGTGCACCAGTTTGTGAGTACACAGGAATACTTGGTAGGACTGAAGACGTGGACAGTCTATTGGAAAACAACTATATTTTTGAGATAGATTGCTTGCAAACAATCAAGGGGCTTGGTCAAAGGGAGAGGAGGTCAAAAAATGTAGCATATGCTTCAAGTTTGCTGGAAAAATACGATGACCAAGATTCTGAAAGTGCGCCAGAGTTTTGCATTGATGCAGGGTCTACTGGAAATGTTGCTAGATTTATAAACCATTGTTGTGAGCCTAATTTGTTTGTACAATGTGTTTTGAGCACACACCATGATTTGCGATTGGCTCGAGTAGTGCTGTTTGCTGCTGACAACATACCCCCTTTACAGGAGCTGACATATGACTATGGCTATGCACTTGATAGTGTCTTGGACTCTGATGGGAAGGTAAAACAAATGGCGTGCTATTGTGGAGCTACAGGCTGCAGGAAGCGATTATTCTAA

Protein sequence

>Msa1119770

MVAQSLEIRDSVANECVVPKLLKVSMNPKVKYGGKKLKDESKDATVTTEVTPMSSQRRSSSRIQAKQKEVEEIQLRRKAEGVEAEEKSDEVEVSPVKSRKRVRRSPSRESVEVVEEKETTEKKKEDVVVEGKPTKKKKSASDEKRELMEVWNEKMAAETENAGGALSDKSSTAKEEEARVAKDNAEIEKRGGGKKSAAKKKSPKKSPEKKSPKKSPGKKSLKMMQNKEILYPDKRIGSIPGIEVGYQFYSRAEMVAVGFHSHWLNGIDFIGQSYSKTYPKLKLPVAVAIVISGMYEDDLDNAEDVVYTGQGGHNLTGNKRQIQDQKLERGNLALKNCWDQKVPVRVIRGHDSRSSYTRKVYTYDGLYKVDSYWAEKGISGFTVYKFRLRRVEGQPTLTTNQVYFTMGRVPQSTAEIRGLICDDITNGQEAVPIPATNLVDDPPSLKVAKGVKLPASASGCKCKDKCTDPNTCECAKRNGSEFPYVSKDGGRLIEAKDVVFECGPNCGCGPECVNRTSQRGLQYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILGRTEDVDSLLENNYIFEIDCLQTIKGLGQRERRSKNVAYASSLLEKYDDQDSESAPEFCIDAGSTGNVARFINHCCEPNLFVQCVLSTHHDLRLARVVLFAADNIPPLQELTYDYGYALDSVLDSDGKVKQMACYCGATGCRKRLF*