Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119870 | AES80712.1 | 53.704 | 108 | 13 | 1 | 7 | 77 | 11 | 118 | 2.50e-23 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119870 | sp|F4KA51|LRL23_ARATH | 50.769 | 65 | 32 | 0 | 1 | 65 | 312 | 376 | 3.79e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119870 | G7KX88 | 53.704 | 108 | 13 | 1 | 7 | 77 | 11 | 118 | 1.20e-23 | 100 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119870 | MtrunA17_Chr7g0238401 | 60.000 | 65 | 26 | 0 | 1 | 65 | 345 | 409 | 7.89e-21 | 85.1 |
| Msa1119870 | MtrunA17_Chr7g0250931 | 60.000 | 65 | 26 | 0 | 1 | 65 | 547 | 611 | 9.43e-21 | 84.7 |
| Msa1119870 | MtrunA17_Chr7g0251071 | 60.000 | 65 | 26 | 0 | 1 | 65 | 351 | 415 | 1.33e-20 | 84.3 |
| Msa1119870 | MtrunA17_Chr7g0251001 | 58.462 | 65 | 27 | 0 | 1 | 65 | 57 | 121 | 2.24e-20 | 83.2 |
| Msa1119870 | MtrunA17_Chr7g0251051 | 58.462 | 65 | 27 | 0 | 1 | 65 | 311 | 375 | 3.96e-20 | 83.2 |
| Msa1119870 | MtrunA17_Chr7g0251061 | 58.462 | 65 | 27 | 0 | 1 | 65 | 346 | 410 | 9.24e-20 | 82.0 |
| Msa1119870 | MtrunA17_Chr1g0212821 | 58.730 | 63 | 26 | 0 | 1 | 63 | 80 | 142 | 2.11e-19 | 80.9 |
| Msa1119870 | MtrunA17_Chr7g0250741 | 57.812 | 64 | 27 | 0 | 2 | 65 | 533 | 596 | 2.60e-19 | 80.9 |
| Msa1119870 | MtrunA17_Chr7g0250901 | 52.308 | 65 | 31 | 0 | 1 | 65 | 1 | 65 | 4.86e-19 | 76.3 |
| Msa1119870 | MtrunA17_Chr7g0253461 | 64.815 | 54 | 19 | 0 | 1 | 54 | 202 | 255 | 1.19e-18 | 77.4 |
| Msa1119870 | MtrunA17_Chr4g0022331 | 54.688 | 64 | 29 | 0 | 2 | 65 | 531 | 594 | 2.17e-18 | 78.2 |
| Msa1119870 | MtrunA17_Chr7g0251081 | 53.846 | 65 | 30 | 0 | 1 | 65 | 123 | 187 | 2.23e-18 | 77.8 |
| Msa1119870 | MtrunA17_Chr7g0251101 | 55.556 | 63 | 28 | 0 | 1 | 63 | 357 | 419 | 4.04e-18 | 77.4 |
| Msa1119870 | MtrunA17_Chr7g0232421 | 52.308 | 65 | 31 | 0 | 1 | 65 | 61 | 125 | 6.04e-18 | 76.6 |
| Msa1119870 | MtrunA17_Chr1g0209401 | 53.846 | 65 | 30 | 0 | 1 | 65 | 52 | 116 | 1.16e-17 | 75.5 |
| Msa1119870 | MtrunA17_Chr7g0232441 | 52.308 | 65 | 31 | 0 | 1 | 65 | 321 | 385 | 4.04e-17 | 74.7 |
| Msa1119870 | MtrunA17_Chr6g0484021 | 53.846 | 65 | 30 | 0 | 1 | 65 | 305 | 369 | 1.32e-16 | 73.2 |
| Msa1119870 | MtrunA17_Chr1g0209471 | 50.769 | 65 | 32 | 0 | 1 | 65 | 61 | 125 | 1.88e-16 | 72.4 |
| Msa1119870 | MtrunA17_Chr1g0209481 | 50.769 | 65 | 32 | 0 | 1 | 65 | 206 | 270 | 2.07e-16 | 72.4 |
| Msa1119870 | MtrunA17_Chr6g0483821 | 53.846 | 65 | 30 | 0 | 1 | 65 | 358 | 422 | 3.73e-16 | 71.6 |
| Msa1119870 | MtrunA17_Chr6g0483981 | 50.769 | 65 | 32 | 0 | 1 | 65 | 266 | 330 | 4.90e-16 | 71.2 |
| Msa1119870 | MtrunA17_Chr6g0484051 | 53.846 | 65 | 30 | 0 | 1 | 65 | 347 | 411 | 5.04e-16 | 71.2 |
| Msa1119870 | MtrunA17_Chr6g0483791 | 53.846 | 65 | 30 | 0 | 1 | 65 | 368 | 432 | 7.68e-16 | 70.9 |
| Msa1119870 | MtrunA17_Chr6g0484041 | 50.769 | 65 | 32 | 0 | 1 | 65 | 321 | 385 | 8.10e-16 | 70.9 |
| Msa1119870 | MtrunA17_Chr6g0484071 | 53.846 | 65 | 30 | 0 | 1 | 65 | 57 | 121 | 1.19e-15 | 70.1 |
| Msa1119870 | MtrunA17_Chr6g0483811 | 50.769 | 65 | 32 | 0 | 1 | 65 | 57 | 121 | 2.70e-15 | 68.9 |
| Msa1119870 | MtrunA17_Chr1g0209511 | 50.794 | 63 | 31 | 0 | 2 | 64 | 316 | 378 | 2.74e-15 | 69.3 |
| Msa1119870 | MtrunA17_Chr1g0209501 | 44.186 | 86 | 41 | 2 | 1 | 86 | 307 | 385 | 2.90e-15 | 69.3 |
| Msa1119870 | MtrunA17_Chr6g0483851 | 50.769 | 65 | 32 | 0 | 1 | 65 | 409 | 473 | 4.67e-15 | 68.6 |
| Msa1119870 | MtrunA17_Chr8g0391231 | 49.231 | 65 | 33 | 0 | 1 | 65 | 333 | 397 | 6.80e-15 | 68.2 |
| Msa1119870 | MtrunA17_Chr1g0209411 | 47.692 | 65 | 34 | 0 | 1 | 65 | 292 | 356 | 1.36e-14 | 67.4 |
| Msa1119870 | MtrunA17_Chr1g0158131 | 46.875 | 64 | 34 | 0 | 1 | 64 | 202 | 265 | 4.42e-14 | 65.9 |
| Msa1119870 | MtrunA17_Chr6g0484091 | 47.692 | 65 | 34 | 0 | 1 | 65 | 1 | 65 | 7.64e-14 | 61.2 |
| Msa1119870 | MtrunA17_Chr1g0158091 | 46.875 | 64 | 34 | 0 | 1 | 64 | 70 | 133 | 1.89e-13 | 63.9 |
| Msa1119870 | MtrunA17_Chr3g0088321 | 46.154 | 65 | 35 | 0 | 1 | 65 | 51 | 115 | 2.15e-13 | 63.9 |
| Msa1119870 | MtrunA17_Chr1g0158041 | 46.154 | 65 | 35 | 0 | 1 | 65 | 389 | 453 | 2.30e-13 | 63.9 |
| Msa1119870 | MtrunA17_Chr1g0157951 | 46.154 | 65 | 35 | 0 | 1 | 65 | 179 | 243 | 3.19e-13 | 63.5 |
| Msa1119870 | MtrunA17_Chr1g0157811 | 45.312 | 64 | 35 | 0 | 1 | 64 | 198 | 261 | 5.16e-13 | 62.8 |
| Msa1119870 | MtrunA17_Chr1g0157791 | 45.312 | 64 | 35 | 0 | 1 | 64 | 385 | 448 | 5.32e-13 | 62.8 |
| Msa1119870 | MtrunA17_Chr1g0157991 | 44.615 | 65 | 36 | 0 | 1 | 65 | 392 | 456 | 7.64e-13 | 62.4 |
| Msa1119870 | MtrunA17_Chr6g0467661 | 45.455 | 66 | 36 | 0 | 1 | 66 | 262 | 327 | 1.02e-12 | 62.0 |
| Msa1119870 | MtrunA17_Chr1g0160531 | 43.077 | 65 | 37 | 0 | 1 | 65 | 122 | 186 | 2.06e-12 | 61.2 |
| Msa1119870 | MtrunA17_Chr1g0157931 | 46.970 | 66 | 33 | 1 | 1 | 64 | 269 | 334 | 2.16e-12 | 61.2 |
| Msa1119870 | MtrunA17_Chr1g0158391 | 44.615 | 65 | 36 | 0 | 1 | 65 | 255 | 319 | 2.64e-12 | 60.8 |
| Msa1119870 | MtrunA17_Chr1g0160561 | 41.538 | 65 | 38 | 0 | 1 | 65 | 344 | 408 | 4.02e-12 | 60.5 |
| Msa1119870 | MtrunA17_Chr1g0158411 | 46.154 | 65 | 35 | 0 | 1 | 65 | 403 | 467 | 4.29e-12 | 60.1 |
| Msa1119870 | MtrunA17_Chr1g0157911 | 44.776 | 67 | 35 | 1 | 1 | 65 | 395 | 461 | 4.59e-12 | 60.1 |
| Msa1119870 | MtrunA17_Chr1g0158441 | 44.615 | 65 | 36 | 0 | 1 | 65 | 27 | 91 | 5.86e-12 | 59.7 |
| Msa1119870 | MtrunA17_Chr1g0158341 | 44.615 | 65 | 36 | 0 | 1 | 65 | 27 | 91 | 8.22e-12 | 59.3 |
| Msa1119870 | MtrunA17_Chr4g0037001 | 38.462 | 65 | 40 | 0 | 1 | 65 | 306 | 370 | 8.74e-12 | 59.3 |
| Msa1119870 | MtrunA17_Chr1g0158151 | 43.077 | 65 | 37 | 0 | 1 | 65 | 384 | 448 | 1.01e-11 | 59.3 |
| Msa1119870 | MtrunA17_Chr1g0160681 | 43.077 | 65 | 37 | 0 | 1 | 65 | 63 | 127 | 1.07e-11 | 58.9 |
| Msa1119870 | MtrunA17_Chr6g0467681 | 44.615 | 65 | 36 | 0 | 1 | 65 | 262 | 326 | 1.10e-11 | 58.9 |
| Msa1119870 | MtrunA17_Chr6g0467641 | 44.615 | 65 | 36 | 0 | 1 | 65 | 191 | 255 | 1.26e-11 | 58.9 |
| Msa1119870 | MtrunA17_Chr1g0208841 | 54.688 | 64 | 29 | 0 | 1 | 64 | 61 | 124 | 1.58e-11 | 58.5 |
| Msa1119870 | MtrunA17_Chr6g0467701 | 44.615 | 65 | 36 | 0 | 1 | 65 | 32 | 96 | 1.61e-11 | 58.5 |
| Msa1119870 | MtrunA17_Chr6g0484031 | 50.820 | 61 | 28 | 1 | 1 | 61 | 221 | 279 | 1.91e-11 | 58.5 |
| Msa1119870 | MtrunA17_Chr1g0158491 | 47.273 | 55 | 29 | 0 | 1 | 55 | 100 | 154 | 2.14e-11 | 56.6 |
| Msa1119870 | MtrunA17_Chr6g0467711 | 44.615 | 65 | 36 | 0 | 1 | 65 | 399 | 463 | 2.21e-11 | 58.2 |
| Msa1119870 | MtrunA17_Chr1g0157881 | 43.939 | 66 | 35 | 1 | 1 | 64 | 462 | 527 | 3.09e-11 | 57.8 |
| Msa1119870 | MtrunA17_Chr4g0036991 | 40.625 | 64 | 38 | 0 | 1 | 64 | 312 | 375 | 3.45e-11 | 57.8 |
| Msa1119870 | MtrunA17_Chr1g0160661 | 41.538 | 65 | 38 | 0 | 1 | 65 | 350 | 414 | 3.74e-11 | 57.4 |
| Msa1119870 | MtrunA17_Chr1g0158761 | 42.424 | 66 | 37 | 1 | 1 | 65 | 332 | 397 | 3.79e-11 | 57.4 |
| Msa1119870 | MtrunA17_Chr1g0160761 | 40.000 | 65 | 39 | 0 | 1 | 65 | 333 | 397 | 3.82e-11 | 57.4 |
| Msa1119870 | MtrunA17_Chr1g0158511 | 44.615 | 65 | 36 | 0 | 1 | 65 | 276 | 340 | 4.10e-11 | 57.4 |
| Msa1119870 | MtrunA17_Chr1g0158711 | 40.000 | 70 | 42 | 0 | 1 | 70 | 259 | 328 | 4.14e-11 | 57.4 |
| Msa1119870 | MtrunA17_Chr1g0206291 | 43.478 | 92 | 45 | 4 | 2 | 87 | 351 | 441 | 4.67e-11 | 57.4 |
| Msa1119870 | MtrunA17_Chr1g0158191 | 40.625 | 64 | 38 | 0 | 1 | 64 | 389 | 452 | 4.81e-11 | 57.4 |
| Msa1119870 | MtrunA17_Chr1g0160721 | 40.000 | 65 | 39 | 0 | 1 | 65 | 349 | 413 | 5.77e-11 | 57.0 |
| Msa1119870 | MtrunA17_Chr1g0157941 | 38.571 | 70 | 43 | 0 | 1 | 70 | 257 | 326 | 6.54e-11 | 57.0 |
| Msa1119870 | MtrunA17_Chr1g0160711 | 40.000 | 65 | 39 | 0 | 1 | 65 | 326 | 390 | 7.48e-11 | 56.6 |
| Msa1119870 | MtrunA17_Chr3g0088341 | 43.077 | 65 | 37 | 0 | 1 | 65 | 276 | 340 | 7.82e-11 | 56.6 |
| Msa1119870 | MtrunA17_Chr1g0157861 | 43.939 | 66 | 35 | 1 | 1 | 64 | 431 | 496 | 8.75e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119870 | AT5G38250.1 | 50.769 | 65 | 32 | 0 | 1 | 65 | 312 | 376 | 3.85e-17 | 75.1 |
| Msa1119870 | AT1G66980.2 | 50.769 | 65 | 32 | 0 | 1 | 65 | 832 | 896 | 8.64e-17 | 73.9 |
| Msa1119870 | AT5G38240.1 | 52.308 | 65 | 31 | 0 | 1 | 65 | 333 | 397 | 8.74e-17 | 73.9 |
| Msa1119870 | AT5G38240.2 | 52.308 | 65 | 31 | 0 | 1 | 65 | 315 | 379 | 9.25e-17 | 73.9 |
| Msa1119870 | AT1G66980.3 | 50.769 | 65 | 32 | 0 | 1 | 65 | 830 | 894 | 9.25e-17 | 73.9 |
| Msa1119870 | AT1G66980.4 | 50.769 | 65 | 32 | 0 | 1 | 65 | 786 | 850 | 9.51e-17 | 73.9 |
| Msa1119870 | AT1G66980.1 | 50.769 | 65 | 32 | 0 | 1 | 65 | 803 | 867 | 9.61e-17 | 73.9 |
| Msa1119870 | AT5G38240.3 | 52.308 | 65 | 31 | 0 | 1 | 65 | 269 | 333 | 1.14e-16 | 73.6 |
| Msa1119870 | AT1G66910.1 | 50.000 | 64 | 32 | 0 | 1 | 64 | 346 | 409 | 1.78e-16 | 73.2 |
| Msa1119870 | AT1G66910.2 | 50.000 | 64 | 32 | 0 | 1 | 64 | 343 | 406 | 1.89e-16 | 73.2 |
| Msa1119870 | AT5G38260.1 | 51.562 | 64 | 31 | 0 | 1 | 64 | 319 | 382 | 1.35e-15 | 70.5 |
| Msa1119870 | AT1G66920.2 | 50.769 | 65 | 31 | 1 | 1 | 64 | 305 | 369 | 1.68e-15 | 70.5 |
| Msa1119870 | AT1G66920.1 | 50.769 | 65 | 31 | 1 | 1 | 64 | 297 | 361 | 1.84e-15 | 70.1 |
| Msa1119870 | AT1G67000.1 | 50.769 | 65 | 31 | 1 | 1 | 64 | 554 | 618 | 4.29e-15 | 69.3 |
| Msa1119870 | AT5G38280.2 | 53.030 | 66 | 30 | 1 | 1 | 65 | 329 | 394 | 5.19e-15 | 68.9 |
| Msa1119870 | AT5G38280.1 | 53.030 | 66 | 30 | 1 | 1 | 65 | 329 | 394 | 6.06e-15 | 68.6 |
| Msa1119870 | AT1G70250.1 | 52.308 | 65 | 30 | 1 | 1 | 64 | 457 | 521 | 8.86e-15 | 68.2 |
| Msa1119870 | AT5G39020.1 | 47.692 | 65 | 34 | 0 | 1 | 65 | 494 | 558 | 1.55e-14 | 67.8 |
| Msa1119870 | AT1G66930.2 | 48.485 | 66 | 33 | 1 | 1 | 65 | 553 | 618 | 1.58e-14 | 67.4 |
| Msa1119870 | AT1G66930.1 | 49.231 | 65 | 32 | 1 | 1 | 64 | 344 | 408 | 3.00e-14 | 66.6 |
| Msa1119870 | AT4G18250.1 | 46.970 | 66 | 33 | 1 | 1 | 64 | 353 | 418 | 4.70e-14 | 66.2 |
| Msa1119870 | AT5G39030.1 | 46.154 | 65 | 35 | 0 | 1 | 65 | 496 | 560 | 8.84e-14 | 65.5 |
| Msa1119870 | AT1G36005.1 | 46.032 | 63 | 34 | 0 | 1 | 63 | 16 | 78 | 9.45e-14 | 63.2 |
| Msa1119870 | AT5G39030.2 | 46.154 | 65 | 35 | 0 | 1 | 65 | 490 | 554 | 9.83e-14 | 65.5 |
| Msa1119870 | AT1G61430.8 | 44.186 | 86 | 42 | 3 | 2 | 81 | 486 | 571 | 8.48e-11 | 57.0 |
| Msa1119870 | AT1G61430.7 | 44.186 | 86 | 42 | 3 | 2 | 81 | 486 | 571 | 8.48e-11 | 57.0 |
| Msa1119870 | AT1G61430.10 | 44.186 | 86 | 42 | 3 | 2 | 81 | 463 | 548 | 8.63e-11 | 57.0 |
| Msa1119870 | AT1G61430.11 | 44.186 | 86 | 42 | 3 | 2 | 81 | 463 | 548 | 9.12e-11 | 57.0 |
| Msa1119870 | AT1G61430.12 | 44.186 | 86 | 42 | 3 | 2 | 81 | 463 | 548 | 9.12e-11 | 57.0 |
| Msa1119870 | AT1G61430.13 | 44.186 | 86 | 42 | 3 | 2 | 81 | 463 | 548 | 9.12e-11 | 57.0 |
| Msa1119870 | AT1G61430.3 | 44.186 | 86 | 42 | 3 | 2 | 81 | 495 | 580 | 9.41e-11 | 57.0 |
| Msa1119870 | AT1G61430.2 | 44.186 | 86 | 42 | 3 | 2 | 81 | 486 | 571 | 9.58e-11 | 56.6 |
| Msa1119870 | AT1G61430.6 | 44.186 | 86 | 42 | 3 | 2 | 81 | 486 | 571 | 9.58e-11 | 56.6 |
| Msa1119870 | AT1G61430.4 | 44.186 | 86 | 42 | 3 | 2 | 81 | 463 | 548 | 9.84e-11 | 56.6 |
Find 18 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAATTAAACTTCTTAAT+TGG | 0.211362 | 7_3:-69017374 | Msa1119870:CDS |
| AATACCTTTGAAGAGAAATT+AGG | 0.274194 | 7_3:-69018314 | Msa1119870:CDS |
| AAAGAGATGTTCTTCAAGTT+AGG | 0.311548 | 7_3:+69017323 | None:intergenic |
| TAACTTGAAGAACATCTCTT+TGG | 0.322662 | 7_3:-69017321 | Msa1119870:CDS |
| GTGAAACATTACATTGATAC+TGG | 0.400425 | 7_3:+69017278 | None:intergenic |
| AAGAGATGTTCTTCAAGTTA+GGG | 0.459290 | 7_3:+69017324 | None:intergenic |
| TTTACCTAATTTCTCTTCAA+AGG | 0.460863 | 7_3:+69018310 | None:intergenic |
| GAAGAGAAATTAGGTAAAGG+AGG | 0.467581 | 7_3:-69018305 | Msa1119870:CDS |
| GAAAATAATAAATGATTCAA+AGG | 0.476405 | 7_3:-69018231 | Msa1119870:CDS |
| ATAAATGATTCAAAGGGAGA+TGG | 0.530038 | 7_3:-69018224 | Msa1119870:CDS |
| TTTGAAGAGAAATTAGGTAA+AGG | 0.533222 | 7_3:-69018308 | Msa1119870:CDS |
| AAAATAATAAATGATTCAAA+GGG | 0.544205 | 7_3:-69018230 | Msa1119870:CDS |
| GGGAGAGTGAACAAAGAAGG+TGG | 0.546101 | 7_3:+69017344 | None:intergenic |
| TTAGGGAGAGTGAACAAAGA+AGG | 0.588407 | 7_3:+69017341 | None:intergenic |
| ACGTGATGGTCGTCAAGTAG+CGG | 0.612643 | 7_3:-69018255 | Msa1119870:CDS |
| TGAAGCGATGTTCACATGTG+AGG | 0.622079 | 7_3:+69018163 | None:intergenic |
| TACAATTCAAGCTTACGTGA+TGG | 0.643167 | 7_3:-69018269 | Msa1119870:CDS |
| CTGGTCCTTGAAGAAAATTG+TGG | 0.659973 | 7_3:+69017297 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATAAATGATTCAAA+GGG | - | chr7_3:69017376-69017395 | Msa1119870:CDS | 10.0% |
| !!! | TATTTTTAATCTTATTTAGT+TGG | - | chr7_3:69017800-69017819 | Msa1119870:intron | 10.0% |
| !! | AAAATAATAAATGATTCAAA+GGG | - | chr7_3:69017376-69017395 | Msa1119870:CDS | 10.0% |
| !!! | TATTTTTAATCTTATTTAGT+TGG | - | chr7_3:69017800-69017819 | Msa1119870:intron | 10.0% |
| !! | GAAAATAATAAATGATTCAA+AGG | - | chr7_3:69017375-69017394 | Msa1119870:CDS | 15.0% |
| !! | GAAAATAATAAATGATTCAA+AGG | - | chr7_3:69017375-69017394 | Msa1119870:CDS | 15.0% |
| !! | CATAGATTAACATAAAAATG+AGG | + | chr7_3:69017589-69017608 | None:intergenic | 20.0% |
| !!! | CTCATTTTTATGTTAATCTA+TGG | - | chr7_3:69017587-69017606 | Msa1119870:intron | 20.0% |
| !!! | TAGTTTATGTTTTGTAAGTT+AGG | - | chr7_3:69017704-69017723 | Msa1119870:intron | 20.0% |
| !! | ATAAGTCATTCAAATGAAAA+TGG | - | chr7_3:69018078-69018097 | Msa1119870:intron | 20.0% |
| !! | CTTCAATTAAACTTCTTAAT+TGG | - | chr7_3:69018232-69018251 | Msa1119870:CDS | 20.0% |
| !! | CATAGATTAACATAAAAATG+AGG | + | chr7_3:69017589-69017608 | None:intergenic | 20.0% |
| !!! | CTCATTTTTATGTTAATCTA+TGG | - | chr7_3:69017587-69017606 | Msa1119870:intron | 20.0% |
| !!! | TAGTTTATGTTTTGTAAGTT+AGG | - | chr7_3:69017704-69017723 | Msa1119870:intron | 20.0% |
| !! | ATAAGTCATTCAAATGAAAA+TGG | - | chr7_3:69018078-69018097 | Msa1119870:intron | 20.0% |
| !! | CTTCAATTAAACTTCTTAAT+TGG | - | chr7_3:69018232-69018251 | Msa1119870:CDS | 20.0% |
| !! | AATACCTTTGAAGAGAAATT+AGG | - | chr7_3:69017292-69017311 | Msa1119870:CDS | 25.0% |
| ! | TTTACCTAATTTCTCTTCAA+AGG | + | chr7_3:69017299-69017318 | None:intergenic | 25.0% |
| ! | TTTGAAGAGAAATTAGGTAA+AGG | - | chr7_3:69017298-69017317 | Msa1119870:CDS | 25.0% |
| !! | TTTTAATCTTTGCTTAGCAT+TGG | - | chr7_3:69017842-69017861 | Msa1119870:intron | 25.0% |
| ! | CGTATACAAATAATCACAAT+AGG | + | chr7_3:69017878-69017897 | None:intergenic | 25.0% |
| ! | TGATTATTTGTATACGTAAG+AGG | - | chr7_3:69017882-69017901 | Msa1119870:intron | 25.0% |
| !! | AACTTGTTTCGAGATAAATT+AGG | - | chr7_3:69018001-69018020 | Msa1119870:intron | 25.0% |
| !! | AATACCTTTGAAGAGAAATT+AGG | - | chr7_3:69017292-69017311 | Msa1119870:CDS | 25.0% |
| ! | TTTACCTAATTTCTCTTCAA+AGG | + | chr7_3:69017299-69017318 | None:intergenic | 25.0% |
| ! | TTTGAAGAGAAATTAGGTAA+AGG | - | chr7_3:69017298-69017317 | Msa1119870:CDS | 25.0% |
| !! | TTTTAATCTTTGCTTAGCAT+TGG | - | chr7_3:69017842-69017861 | Msa1119870:intron | 25.0% |
| ! | CGTATACAAATAATCACAAT+AGG | + | chr7_3:69017878-69017897 | None:intergenic | 25.0% |
| ! | TGATTATTTGTATACGTAAG+AGG | - | chr7_3:69017882-69017901 | Msa1119870:intron | 25.0% |
| !! | AACTTGTTTCGAGATAAATT+AGG | - | chr7_3:69018001-69018020 | Msa1119870:intron | 25.0% |
| ATAAATGATTCAAAGGGAGA+TGG | - | chr7_3:69017382-69017401 | Msa1119870:intron | 30.0% | |
| TTCACTAATAGACCTTCTAA+GGG | - | chr7_3:69017549-69017568 | Msa1119870:intron | 30.0% | |
| ! | TATGTTTTGTAAGTTAGGAC+TGG | - | chr7_3:69017709-69017728 | Msa1119870:intron | 30.0% |
| !! | TCATCTATTTGTTAGTCTTG+TGG | - | chr7_3:69017733-69017752 | Msa1119870:intron | 30.0% |
| TTTCGAGATAAATTAGGTGA+AGG | - | chr7_3:69018007-69018026 | Msa1119870:intron | 30.0% | |
| ! | AAGAGATGTTCTTCAAGTTA+GGG | + | chr7_3:69018285-69018304 | None:intergenic | 30.0% |
| ! | AAAGAGATGTTCTTCAAGTT+AGG | + | chr7_3:69018286-69018305 | None:intergenic | 30.0% |
| TAACTTGAAGAACATCTCTT+TGG | - | chr7_3:69018285-69018304 | Msa1119870:CDS | 30.0% | |
| ATAAATGATTCAAAGGGAGA+TGG | - | chr7_3:69017382-69017401 | Msa1119870:intron | 30.0% | |
| TTCACTAATAGACCTTCTAA+GGG | - | chr7_3:69017549-69017568 | Msa1119870:intron | 30.0% | |
| ! | TATGTTTTGTAAGTTAGGAC+TGG | - | chr7_3:69017709-69017728 | Msa1119870:intron | 30.0% |
| !! | TCATCTATTTGTTAGTCTTG+TGG | - | chr7_3:69017733-69017752 | Msa1119870:intron | 30.0% |
| TTTCGAGATAAATTAGGTGA+AGG | - | chr7_3:69018007-69018026 | Msa1119870:intron | 30.0% | |
| ! | AAGAGATGTTCTTCAAGTTA+GGG | + | chr7_3:69018285-69018304 | None:intergenic | 30.0% |
| ! | AAAGAGATGTTCTTCAAGTT+AGG | + | chr7_3:69018286-69018305 | None:intergenic | 30.0% |
| TAACTTGAAGAACATCTCTT+TGG | - | chr7_3:69018285-69018304 | Msa1119870:CDS | 30.0% | |
| GAAGAGAAATTAGGTAAAGG+AGG | - | chr7_3:69017301-69017320 | Msa1119870:CDS | 35.0% | |
| TACAATTCAAGCTTACGTGA+TGG | - | chr7_3:69017337-69017356 | Msa1119870:CDS | 35.0% | |
| ATCTATGACTTCATGTCCAA+AGG | - | chr7_3:69017507-69017526 | Msa1119870:intron | 35.0% | |
| GAACTTATCCAATGATCCTT+TGG | + | chr7_3:69017526-69017545 | None:intergenic | 35.0% | |
| CTTCACTAATAGACCTTCTA+AGG | - | chr7_3:69017548-69017567 | Msa1119870:intron | 35.0% | |
| !! | TTGTTAGTCTTGTGGTTAGT+TGG | - | chr7_3:69017741-69017760 | Msa1119870:intron | 35.0% |
| AAATTAGGTGAAGGAGGATT+TGG | - | chr7_3:69018016-69018035 | Msa1119870:intron | 35.0% | |
| CATCCATGAAATTCTTCTCT+CGG | - | chr7_3:69018134-69018153 | Msa1119870:intron | 35.0% | |
| ! | TTGGACCACAATTTTCTTCA+AGG | - | chr7_3:69018304-69018323 | Msa1119870:CDS | 35.0% |
| GAAGAGAAATTAGGTAAAGG+AGG | - | chr7_3:69017301-69017320 | Msa1119870:CDS | 35.0% | |
| TACAATTCAAGCTTACGTGA+TGG | - | chr7_3:69017337-69017356 | Msa1119870:CDS | 35.0% | |
| ATCTATGACTTCATGTCCAA+AGG | - | chr7_3:69017507-69017526 | Msa1119870:intron | 35.0% | |
| GAACTTATCCAATGATCCTT+TGG | + | chr7_3:69017526-69017545 | None:intergenic | 35.0% | |
| CTTCACTAATAGACCTTCTA+AGG | - | chr7_3:69017548-69017567 | Msa1119870:intron | 35.0% | |
| !! | TTGTTAGTCTTGTGGTTAGT+TGG | - | chr7_3:69017741-69017760 | Msa1119870:intron | 35.0% |
| AAATTAGGTGAAGGAGGATT+TGG | - | chr7_3:69018016-69018035 | Msa1119870:intron | 35.0% | |
| CATCCATGAAATTCTTCTCT+CGG | - | chr7_3:69018134-69018153 | Msa1119870:intron | 35.0% | |
| ! | TTGGACCACAATTTTCTTCA+AGG | - | chr7_3:69018304-69018323 | Msa1119870:CDS | 35.0% |
| ! | TGTGAACATCGCTTCACTTT+TGG | - | chr7_3:69017450-69017469 | Msa1119870:intron | 40.0% |
| !! | GTGAACATCGCTTCACTTTT+GGG | - | chr7_3:69017451-69017470 | Msa1119870:intron | 40.0% |
| CTTCATGTCCAAAGGATCAT+TGG | - | chr7_3:69017515-69017534 | Msa1119870:intron | 40.0% | |
| TTGACACAGAAACCCTTAGA+AGG | + | chr7_3:69017564-69017583 | None:intergenic | 40.0% | |
| CGAGATAAATTAGGTGAAGG+AGG | - | chr7_3:69018010-69018029 | Msa1119870:intron | 40.0% | |
| TGACCGAGAGAAGAATTTCA+TGG | + | chr7_3:69018140-69018159 | None:intergenic | 40.0% | |
| TGAAATTCTTCTCTCGGTCA+TGG | - | chr7_3:69018140-69018159 | Msa1119870:intron | 40.0% | |
| TTAGGGAGAGTGAACAAAGA+AGG | + | chr7_3:69018268-69018287 | None:intergenic | 40.0% | |
| CTGGTCCTTGAAGAAAATTG+TGG | + | chr7_3:69018312-69018331 | None:intergenic | 40.0% | |
| ! | TGTGAACATCGCTTCACTTT+TGG | - | chr7_3:69017450-69017469 | Msa1119870:intron | 40.0% |
| !! | GTGAACATCGCTTCACTTTT+GGG | - | chr7_3:69017451-69017470 | Msa1119870:intron | 40.0% |
| CTTCATGTCCAAAGGATCAT+TGG | - | chr7_3:69017515-69017534 | Msa1119870:intron | 40.0% | |
| TTGACACAGAAACCCTTAGA+AGG | + | chr7_3:69017564-69017583 | None:intergenic | 40.0% | |
| CGAGATAAATTAGGTGAAGG+AGG | - | chr7_3:69018010-69018029 | Msa1119870:intron | 40.0% | |
| TGACCGAGAGAAGAATTTCA+TGG | + | chr7_3:69018140-69018159 | None:intergenic | 40.0% | |
| TGAAATTCTTCTCTCGGTCA+TGG | - | chr7_3:69018140-69018159 | Msa1119870:intron | 40.0% | |
| TTAGGGAGAGTGAACAAAGA+AGG | + | chr7_3:69018268-69018287 | None:intergenic | 40.0% | |
| CTGGTCCTTGAAGAAAATTG+TGG | + | chr7_3:69018312-69018331 | None:intergenic | 40.0% | |
| TGAAGCGATGTTCACATGTG+AGG | + | chr7_3:69017446-69017465 | None:intergenic | 45.0% | |
| TACGTTCGCGAGTTCAATTC+AGG | - | chr7_3:69018174-69018193 | Msa1119870:intron | 45.0% | |
| TGAAGCGATGTTCACATGTG+AGG | + | chr7_3:69017446-69017465 | None:intergenic | 45.0% | |
| TACGTTCGCGAGTTCAATTC+AGG | - | chr7_3:69018174-69018193 | Msa1119870:intron | 45.0% | |
| ACGTGATGGTCGTCAAGTAG+CGG | - | chr7_3:69017351-69017370 | Msa1119870:CDS | 50.0% | |
| ! | GGTGTTGTGTGCTTGCATGA+TGG | - | chr7_3:69018037-69018056 | Msa1119870:intron | 50.0% |
| TGCATGATGGTCGTCAAGTG+CGG | - | chr7_3:69018050-69018069 | Msa1119870:intron | 50.0% | |
| GGGAGAGTGAACAAAGAAGG+TGG | + | chr7_3:69018265-69018284 | None:intergenic | 50.0% | |
| ACGTGATGGTCGTCAAGTAG+CGG | - | chr7_3:69017351-69017370 | Msa1119870:CDS | 50.0% | |
| ! | GGTGTTGTGTGCTTGCATGA+TGG | - | chr7_3:69018037-69018056 | Msa1119870:intron | 50.0% |
| TGCATGATGGTCGTCAAGTG+CGG | - | chr7_3:69018050-69018069 | Msa1119870:intron | 50.0% | |
| GGGAGAGTGAACAAAGAAGG+TGG | + | chr7_3:69018265-69018284 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 69017286 | 69018342 | 69017286 | ID=Msa1119870;Name=Msa1119870 |
| chr7_3 | mRNA | 69017286 | 69018342 | 69017286 | ID=Msa1119870-mRNA-1;Parent=Msa1119870;Name=Msa1119870-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|0|0.5|2|0|91 |
| chr7_3 | exon | 69018178 | 69018342 | 69018178 | ID=Msa1119870-mRNA-1:exon:17449;Parent=Msa1119870-mRNA-1 |
| chr7_3 | exon | 69017286 | 69017396 | 69017286 | ID=Msa1119870-mRNA-1:exon:17448;Parent=Msa1119870-mRNA-1 |
| chr7_3 | CDS | 69018178 | 69018342 | 69018178 | ID=Msa1119870-mRNA-1:cds;Parent=Msa1119870-mRNA-1 |
| chr7_3 | CDS | 69017286 | 69017396 | 69017286 | ID=Msa1119870-mRNA-1:cds;Parent=Msa1119870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
